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Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035302714", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302714" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GZG2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZG2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC103158534", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZG2", "locus": {} } ], "crossref": [ { "id": "A0A9J7GZG2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GZG2", "database": "AlphaFoldDB", "categories": [] }, { "id": "103158534", "url": "https://www.ncbi.nlm.nih.gov/gene/103158534", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR009434", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009434", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:103158534", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103158534", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GZG2", "url": "https://www.orthodb.org/?gene=A0A9J7GZG2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PF06390", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06390", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035302714", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302714", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GZG2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZG2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GZG2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZG2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDRRSRAQQWRRARHNYNDLCPPIGRRAATALLWLSCSIALLRALASSNARAQQRAAQRRSFLNAHHRSAAAAAAAAQVLPESPESESDQELEGARAELPPVLARPECLDYDDIESETESESETESETETETETETETESDIESETETETETESDTAPATEPETEPEDERGPRGATFNQSLTQRLHALKLQSADASPRRAQPTTQESESDSEGEEPQRGPLDQDPRDPEESDSDERQEEARQPRRCKTRRLARRRRDQSPESPPRKGPIPIRRH", "length": 274, "header": "tr|A0A9J7GZG2-1|A0A9J7GZG2_CRIGR Isoform 1 of Neuroendocrine secretory protein 55 OS=Cricetulus griseus OX=10029 GN=LOC103158534 PE=4 SV=1 CANONICAL=A0A9J7GZG2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GZG2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZG2/entry#A0A9J7GZG2-1", "sequence": { "sequence": "MDRRSRAQQWRRARHNYNDLCPPIGRRAATALLWLSCSIALLRALASSNARAQQRAAQRRSFLNAHHRSAAAAAAAAQVLPESPESESDQELEGARAELPPVLARPECLDYDDIESETESESETESETETETETETETESDIESETETETETESDTAPATEPETEPEDERGPRGATFNQSLTQRLHALKLQSADASPRRAQPTTQESESDSEGEEPQRGPLDQDPRDPEESDSDERQEEARQPRRCKTRRLARRRRDQSPESPPRKGPIPIRRH", "length": 274, "header": "tr|A0A9J7GZG2-1|A0A9J7GZG2_CRIGR Isoform 1 of Neuroendocrine secretory protein 55 OS=Cricetulus griseus OX=10029 GN=LOC103158534 PE=4 SV=1 CANONICAL=A0A9J7GZG2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GZG2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZG2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GZG2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZG2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:103158534", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103158534", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "response to parathyroid hormone", "id": "GO:0071107", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071107", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GZG2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZG2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 178, "end_pos": 180, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 178, "end_pos": 180 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7H0S3-1", "uniprot_ac": "A0A9J7H0S3", "uniprot_id": "A0A9J7H0S3_CRIGR", "mass": { "chemical_mass": 99881.0, "monoisotopic_mass": 99881.0 }, "refseq": { "ac": "XP_035302749", "name": "doublecortin domain-containing protein 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302749" }, "gene_names": [ { "name": "Dcdc1", "type": "recommended", "evidence": [ { "id": "A0A9J7H0S3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0S3" } ] }, { "name": "Dcdc1", "type": "synonym", "evidence": [ { "id": "XP_035302749", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302749" } ] } ], "protein_names": [ { "name": "Doublecortin domain-containing protein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7H0S3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0S3/entry#names_and_taxonomy" } ] }, { "name": "doublecortin domain-containing protein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_035302749", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302749" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035302749", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302749" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H0S3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0S3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Dcdc1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0S3", "locus": {} } ], "crossref": [ { "id": "A0A9J7H0S3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H0S3", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd17156", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17156", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd17158", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17158", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd17159", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17159", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100769357", "url": "https://www.ncbi.nlm.nih.gov/gene/100769357", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000772", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000772", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003533", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003533", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036572", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036572", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043188", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043188", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100769357", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769357", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H0S3", "url": "https://www.orthodb.org/?gene=A0A9J7H0S3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46302", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46302", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46302:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46302:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00652", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00652", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035302749", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302749", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GZI5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZI5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GZI5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZI5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H0S3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0S3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H0S3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0S3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKRPASKTPEQCAPMRLRILRNGDKKNSKSLVMGPDILPGWKSQTVNAERKEKSHAANYSETERNQIEFHHLLERCTEILNLPSAARRLFNEKGREIFSLNDLQRDEQVYVSCGEHWINPDLSIAQQRKQVFLRSLELDVSKIKTFCSMRKVEALVLEVQGDLVSGGKLAVNKPVVILEEEKQVKGPEGTQMQNAALIPGNASRDTLDSHARAHLRMEACCRMLKYAWQDPSYNLKDDGSLPKKMEIEPFENVQPQKKHSHFPKHSKLKKLCRQEFEYRDGQIISLGAPQLVLGVQGSKLRSGTEVVLMEKKSNDGHQHWTHKEESRTIHLVSNPNLVLAVSMTKAQNEAHGYPVIIQKYKPYGNGAANQKWHYMENTRTFIAFHSTALDKEVTAANSSGLCTSSVTKENIDQPGYCYLSPDGKKKMMLCLACGQSMRAGKGLKQLLPGVPFFCVSGSEQKSLARRPFKVISIAKADLSSYEAENTLKHYEERLSSLWMKTHACTTSHSGVVASYHTYQKAVKIIAYKNGDGYRNGKLIVAGTFHGLLAECTERLGLARAASKVYTRDGSNILTLHGLILWAVGETLSQRDPKEQESSPDSVGTEETAVQNAEENSRMKMENRLDCLEGIDKSLLAQILKSPIAIWVSCGEPFLPLNAPQKSEKLKKQNWLKRNQILADLDTMRHKMRQLKGRRVAACQPATMVPTQSPLQPVVVKGGWTEQTQEEMQLMELIRQTEAQLSEGQELQSRCSLIATPCKVTQQQQGLYQAPQVKRVWAYQNGGRPDDGTYAWASTISELLDDCTARLKMSHPAKALFTSNGELIQSWDTIERDMTVCVSSGHGFMTSKEKKQLMEVKANYARIRRQQGPEATDIVLSPSMKLLSLMQLHK", "length": 889, "header": "tr|A0A9J7H0S3-1|A0A9J7H0S3_CRIGR Isoform 1 of Doublecortin domain-containing protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Dcdc1 PE=4 SV=1 CANONICAL=A0A9J7H0S3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GZI5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0S3/entry#A0A9J7GZI5-1", "sequence": { "sequence": "MWPVLPSGQLNEAFDWPIEGLLVPNSPPMKRPASKTPEQCAPMRLRILRNGDKKNSKSLVMGPDILPGWKSQCTEILNLPSAARRLFNEKGREIFSLNDLQRDEQVYVSCGEHWINPDLSIAQQRKQVFLRSLELDVSKIKTFCSMRKVEALVLEVQGDLVSGGKLAVNKPVVILEEEKQVKGPEGTQMQNAALIPGNASRDTLDSHARAHLRMEACCRMLKYAWQDPSYNLKDDGSLPKKMEIEPFENVQPQKKHSHFPKHSKLKKLCRQEFEYRDGQIISLGAPQLVLGVQGSKLRSGTEVVLMEKKSNDGHQHWTHKEESRTIHLVSNPNLVLAVSMTKAQNEAHGYPVIIQKYKPYGNGAANQKWHYMENTRTFIAFHSTALDKEVTAANSSGLCTSSVTKENIDQPGYCYLSPDGKKKMMLCLACGQSMRAGKGLKQLLPGVPFFCVSGSEQKSLARRPFKVISIAKADLSSYEAENTLKHYEERLSSLWMKTHACTTSHSGVVASYHTYQKAVKIIAYKNGDGYRNGKLIVAGTFHGLLAECTERLGLARAASKVYTRDGSNILTLHGLILWAVGETLSQRDPKEQESSPDSVGTEETAVQNAEENSRMKMENRLDCLEGIDKSLLAQILKSPIAIWVSCGEPFLPLNAPQKSEKLKKQNWLKRNQILADLDTMRHKMRQLKGRRVAACQPATMVPTQSPLQPVVVKGGWTEQTQEEMQLMELIRQTEAQLSEGQELQSRCSLIATPCKVTQQQQGLYQAPQVKRVWAYQNGGRPDDGTYAWASTISELLDDCTARLKMSHPAKALFTSNGELIQSWDTIERDMTVCVSSGHGFMTSKEKKQLMEVKANYARIRRQQGPEATDIVLSPSMKLLSLMQLHK", "length": 886, "header": "tr|A0A9J7GZI5-1|A0A9J7H0S3_CRIGR Computationally mapped isoform of Doublecortin domain-containing protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Dcdc1 PE=4 SV=1 CANONICAL=A0A9J7H0S3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H0S3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0S3/entry#A0A9J7H0S3-1", "sequence": { "sequence": 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This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: incomplete on the amino end.", "evidence": [ { "database": "RefSeq", "id": "XP_035301749", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035301749" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GZL6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZL6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC118238938", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZL6", "locus": {} } ], "crossref": [ { "id": "A0A9J7GZL6", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GZL6", "database": "AlphaFoldDB", "categories": [] }, { "id": "118238938", "url": "https://www.ncbi.nlm.nih.gov/gene/118238938", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:118238938", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118238938", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GZL6", "url": "https://www.orthodb.org/?gene=A0A9J7GZL6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24381", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24381", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24381:SF427", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24381:SF427", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13912", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13912", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035301749", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035301749", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GZL6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZL6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GZL6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZL6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "TLSSSLFISYRCHLVEKLHDCKEDHECAEICNFSTEGTVNHKFYPGVHICKRNGFVNVVIGHLALSVRLKPRPGQKSNEVQEHGPELHNNKEFENTSSSPPSLQKLTSSDTATAEKSNRDKQTNEDLRLGQNHESTPAKEKRHECKQCGKTFSSLGSLKGHDKHYHAKKPFVCKQCGKAFPFPCSLQVHERIHTGEKPYTCKQCGKTFAHSSSLLRHEKIHTGTSSHKCQLCGKTFTRFNSLLRHKIIHTGEKPYACNQCGKSFSRSASLQRHTRIHTGEKPFVCKQCGKGFITSTYLQVHERTHTGEKPYVCKECGNAFMLWTQFQKHKVIHSGVNPYVCKQCGKNFTRFGSLQIHERIHTGEKPYVCKQCAKAFLSLNQLRRHEISHSGVKPYMCKQCGKGFICSTTFRSHEKIHSGEKPYVCSQCEKVLGSESALRKHKMIHTGEKPCVCKQCGKTFTHLSSLQYHALMHSGEKPHECKTCGKGFRSLSHLKKHERTQH", "length": 502, "header": "tr|A0A9J7GZL6-1|A0A9J7GZL6_CRIGR Isoform 1 of Zinc finger protein OZF-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC118238938 PE=4 SV=1 CANONICAL=A0A9J7GZL6-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GZL6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZL6/entry#A0A9J7GZL6-1", "sequence": { "sequence": "TLSSSLFISYRCHLVEKLHDCKEDHECAEICNFSTEGTVNHKFYPGVHICKRNGFVNVVIGHLALSVRLKPRPGQKSNEVQEHGPELHNNKEFENTSSSPPSLQKLTSSDTATAEKSNRDKQTNEDLRLGQNHESTPAKEKRHECKQCGKTFSSLGSLKGHDKHYHAKKPFVCKQCGKAFPFPCSLQVHERIHTGEKPYTCKQCGKTFAHSSSLLRHEKIHTGTSSHKCQLCGKTFTRFNSLLRHKIIHTGEKPYACNQCGKSFSRSASLQRHTRIHTGEKPFVCKQCGKGFITSTYLQVHERTHTGEKPYVCKECGNAFMLWTQFQKHKVIHSGVNPYVCKQCGKNFTRFGSLQIHERIHTGEKPYVCKQCAKAFLSLNQLRRHEISHSGVKPYMCKQCGKGFICSTTFRSHEKIHSGEKPYVCSQCEKVLGSESALRKHKMIHTGEKPCVCKQCGKTFTHLSSLQYHALMHSGEKPHECKTCGKGFRSLSHLKKHERTQH", "length": 502, "header": "tr|A0A9J7GZL6-1|A0A9J7GZL6_CRIGR Isoform 1 of Zinc finger protein OZF-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC118238938 PE=4 SV=1 CANONICAL=A0A9J7GZL6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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}, { "id": "100769175", "url": "https://www.ncbi.nlm.nih.gov/gene/100769175", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001374", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001374", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036867", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036867", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051937", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051937", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100769175", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769175", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GZM1", "url": "https://www.orthodb.org/?gene=A0A9J7GZM1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7GZX9", "url": "https://www.orthodb.org/?gene=A0A9J7GZX9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15672", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15672", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15672:SF14", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15672:SF14", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01424", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01424", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035300132", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300132", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GZM1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZM1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GZM1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZM1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GZX9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZX9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GZX9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZX9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSEQGELSPAIVEEGRTEPDSAPENGIIKSESLDEEEKLELQRRLAAQNQERRKSKSGAGKGKLTRSLAVCEESSARPGGDSHQDQESIHLQLSSFPSLQEEAKPRKDDSEKEKEKDKNRDKPSEKPKIRMLSKDCSQEYTDSTGIDLHEFLINTLKNNSRDRMILLKMEQEMIDFIGDSNNHYKKFPQMSSYQRMLVHRVAAYFGLDHNVDQTGKSVIINKTSSTRMGNRDSSGRTSGSRQSSSETELRWSDQQRAWSSTDSDSSNRNLKPTMTKTASFGGITVLTRGDSTSSTRSAGKLSKTGSESSSSAGSSGSLSRTHPPLQSTALTSSVASGSPGCMPYAENGMGGQVPPSSTSYILLPLETATGIPPGSILLNPHTGQPFVNPDGTPAIYNPPGSQQTLRGTVGGQPQQPPQQQPSPQPQQQVQPSQPQMAGPLVTQREEVAAQFSQLSMSRQSSGDTPEPPSYPASLMPQPAQPPSYVITSAGQQLSTGGFSDTGPPITQQVLQAPPSPQGFVQQPSPAQMPVYYYPSGQYPTSSTQQYRPLASVQYSTQRSQQIPQTAQQAGM", "length": 571, "header": "tr|A0A9J7GZM1-1|A0A9J7GZM1_CRIGR Isoform 1 of cAMP-regulated phosphoprotein 21 isoform X3 OS=Cricetulus griseus OX=10029 GN=Arpp21 PE=4 SV=1 CANONICAL=A0A9J7GZM1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GZM1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZM1/entry#A0A9J7GZM1-1", "sequence": { "sequence": "MSEQGELSPAIVEEGRTEPDSAPENGIIKSESLDEEEKLELQRRLAAQNQERRKSKSGAGKGKLTRSLAVCEESSARPGGDSHQDQESIHLQLSSFPSLQEEAKPRKDDSEKEKEKDKNRDKPSEKPKIRMLSKDCSQEYTDSTGIDLHEFLINTLKNNSRDRMILLKMEQEMIDFIGDSNNHYKKFPQMSSYQRMLVHRVAAYFGLDHNVDQTGKSVIINKTSSTRMGNRDSSGRTSGSRQSSSETELRWSDQQRAWSSTDSDSSNRNLKPTMTKTASFGGITVLTRGDSTSSTRSAGKLSKTGSESSSSAGSSGSLSRTHPPLQSTALTSSVASGSPGCMPYAENGMGGQVPPSSTSYILLPLETATGIPPGSILLNPHTGQPFVNPDGTPAIYNPPGSQQTLRGTVGGQPQQPPQQQPSPQPQQQVQPSQPQMAGPLVTQREEVAAQFSQLSMSRQSSGDTPEPPSYPASLMPQPAQPPSYVITSAGQQLSTGGFSDTGPPITQQVLQAPPSPQGFVQQPSPAQMPVYYYPSGQYPTSSTQQYRPLASVQYSTQRSQQIPQTAQQAGM", "length": 571, "header": "tr|A0A9J7GZM1-1|A0A9J7GZM1_CRIGR Isoform 1 of cAMP-regulated phosphoprotein 21 isoform X3 OS=Cricetulus griseus OX=10029 GN=Arpp21 PE=4 SV=1 CANONICAL=A0A9J7GZM1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GZX9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZM1/entry#A0A9J7GZX9-1", "sequence": { "sequence": "MGVQQSPHSQGVMSSQQGAPVQGVMVSYPTMSSFQVPMTQGSQAVPQQTYQPPIMLPNQAGQGSLPATGMPVYCNVTPPTPQNNLRLMGPHCPSSTVPVMSASCRTNCASMSNASWQVKF", "length": 120, "header": "tr|A0A9J7GZX9-1|A0A9J7GZX9_CRIGR Computationally mapped isoform of cAMP-regulated phosphoprotein 21 isoform X4 OS=Cricetulus griseus OX=10029 GN=Arpp21 PE=4 SV=1 CANONICAL=A0A9J7GZM1-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 392, "start_aa": "Thr", "end_pos": 392, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr392", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GZM1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZM1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GZM1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZM1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100769175", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769175", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GZM1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZM1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "nucleic acid binding", "id": "GO:0003676", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003676", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GZM1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZM1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 158, "end_pos": 160, "annotation": "n_glycosylation_sequon" }, { "start_pos": 221, "end_pos": 223, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7GZM1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZM1" }, { "id": "PS51061", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51061" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "R3H", "eco_id": "ECO_0000259", "start_pos": 163, "end_pos": 226, "start_aa": "Arg", "end_aa": "Thr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 392 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 158, "end_pos": 160 }, { "start_pos": 221, "end_pos": 223 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GZP1-1", "uniprot_ac": "A0A9J7GZP1", "uniprot_id": "A0A9J7GZP1_CRIGR", "mass": { "chemical_mass": 76513.0, "monoisotopic_mass": 76513.0 }, "refseq": { "ac": "XP_035301790", "name": "MLV-related proviral Env polyprotein-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035301790" }, "gene_names": [ { "name": "LOC118238982", "type": "recommended", "evidence": [ { "id": "A0A9J7GZP1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZP1" } ] }, { "name": "LOC118238982", "type": "synonym", "evidence": [ { "id": "XP_035301790", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035301790" } ] } ], "protein_names": [ { "name": "MLV-related proviral Env polyprotein-like", "type": "synonym", "evidence": [ { "id": "XP_035301790", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035301790" }, { "id": "A0A9J7GZP1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZP1/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 15% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035301790", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035301790" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GZP1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZP1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC118238982", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZP1", "locus": {} } ], "crossref": [ { "id": "A0A9J7GZP1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GZP1", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd09851", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09851", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "118238982", "url": "https://www.ncbi.nlm.nih.gov/gene/118238982", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008981", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008981", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018154", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018154", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:118238982", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118238982", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GZP1", "url": "https://www.orthodb.org/?gene=A0A9J7GZP1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10424", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10424", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10424:SF72", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10424:SF72", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00429", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00429", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035301790", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035301790", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GZP1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZP1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GZP1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZP1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035302865", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302865" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GZR4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZR4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100756472", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZR4", "locus": {} } ], "crossref": [ { "id": "A0A9J7GZR4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GZR4", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00190", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00190", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100756472", "url": "https://www.ncbi.nlm.nih.gov/gene/100756472", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001254", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001254", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001314", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001314", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009003", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009003", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018114", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018114", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033116", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033116", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043504", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043504", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100756472", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756472", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GZR4", "url": "https://www.orthodb.org/?gene=A0A9J7GZR4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24271", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24271", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24271:SF68", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24271:SF68", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00089", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00089", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035302865", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302865", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GZR4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZR4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GZR4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZR4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVILRFITLALVTGLVGGETRIIKGYECTPHSQPWQVALFQKTRLLCGATLIAPKWLLTAAHCRKPRYVILLGEHNLEKTDGYEQKRMATESFPHPGFNNSLPNKDHRNDIMLVKMSSPAILTRAVQPLTLSSHCVTAGTSCLISGWGTTSSPQLRLPHSLRCANVSIIEHKECENAYPGNITETMLCASVRKEGKDSCQGDSGGPLVCNGSLQGIISWGQDPCAVTRKPGVYTKVCKYTDWIYEIMKNN", "length": 250, "header": "tr|A0A9J7GZR4-1|A0A9J7GZR4_CRIGR Isoform 1 of Kallikrein-11 OS=Cricetulus griseus OX=10029 GN=LOC100756472 PE=3 SV=1 CANONICAL=A0A9J7GZR4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GZR4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZR4/entry#A0A9J7GZR4-1", "sequence": { "sequence": "MVILRFITLALVTGLVGGETRIIKGYECTPHSQPWQVALFQKTRLLCGATLIAPKWLLTAAHCRKPRYVILLGEHNLEKTDGYEQKRMATESFPHPGFNNSLPNKDHRNDIMLVKMSSPAILTRAVQPLTLSSHCVTAGTSCLISGWGTTSSPQLRLPHSLRCANVSIIEHKECENAYPGNITETMLCASVRKEGKDSCQGDSGGPLVCNGSLQGIISWGQDPCAVTRKPGVYTKVCKYTDWIYEIMKNN", "length": 250, "header": "tr|A0A9J7GZR4-1|A0A9J7GZR4_CRIGR Isoform 1 of Kallikrein-11 OS=Cricetulus griseus OX=10029 GN=LOC100756472 PE=3 SV=1 CANONICAL=A0A9J7GZR4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GZR4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZR4" } ], "pmid": "" }, { "name": "secretory granule", "id": "GO:0030141", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030141", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GZR4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZR4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GZR4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZR4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 165, "end_pos": 167, "annotation": "n_glycosylation_sequon" }, { "start_pos": 181, "end_pos": 183, "annotation": "n_glycosylation_sequon" }, { "start_pos": 210, "end_pos": 212, "annotation": 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"count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { 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This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035301862", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035301862" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H255", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H255" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100770072", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H255", "locus": {} } ], "crossref": [ { "id": "A0A9J7H255", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H255", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein 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"url": "https://www.uniprot.org/uniprotkb/A0A9J7H255", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H255-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H255-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H3T8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3T8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H3T8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3T8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MYSGIVGKPSASSMVIGIMKGLTLKRSLIHAGIVENPSVTPVVMRNMKECTLERNVCMLIGRSQSGTAILKGMNCPMRSTDIHSALPGNCILLLPCCVRIRRSCFGRLCVLLTAGILGRTARRRRSRNGFCIAESNSNVPMCRISIF", "length": 147, "header": "tr|A0A9J7H255-1|A0A9J7H255_CRIGR Isoform 1 of Uncharacterized protein LOC100770072 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100770072 PE=4 SV=1 CANONICAL=A0A9J7H255-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GZT1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H255/entry#A0A9J7GZT1-1", "sequence": { "sequence": "MYSGIVGKPSASSMVIGIMKGLTLKRSLIHAGIVENPSVTPVVMRNMKECTLERNVCMLIGRSQSGTAILKGMNCPMRSTDIHSALPGNCILLLPCCVRIRRSCFGRLCVLLTAGILGRTARRRRSRNGKSGL", "length": 133, "header": "tr|A0A9J7GZT1-1|A0A9J7H255_CRIGR Computationally mapped isoform of Uncharacterized protein LOC100770072 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100770072 PE=4 SV=1 CANONICAL=A0A9J7H255-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H0W4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H255/entry#A0A9J7H0W4-1", "sequence": { "sequence": "MSRIPMCPCAESPFSENRLRAIHADSLDSWRDQRSKDPDCASVSCSEKVAFEDVAVNFTSGEWALLDSFQKKLYRDVMKETFLNLISIEETVEENIGEDCKDLSRST", "length": 107, "header": "tr|A0A9J7H0W4-1|A0A9J7H0W4_CRIGR Computationally mapped isoform of Zinc finger protein 709 isoform X5 OS=Cricetulus griseus OX=10029 GN=LOC100770072 PE=4 SV=1 CANONICAL=A0A9J7H255-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H255-1", "url": 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035298281", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035298281" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GZV1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZV1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ankrd45", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZV1", "locus": {} } ], "crossref": [ { "id": "A0A9J7GZV1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GZV1", "database": "AlphaFoldDB", "categories": [] }, { "id": "100755441", "url": "https://www.ncbi.nlm.nih.gov/gene/100755441", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050776", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050776", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100755441", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755441", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GZV1", "url": "https://www.orthodb.org/?gene=A0A9J7GZV1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24201", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24201", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24201:SF15", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24201:SF15", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035298281", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035298281", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GZV1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZV1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GZV1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZV1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MELEGIPEPEGSEKSVVSSQEEYEESQEAEERGLENPLLQPALRGDVEGLQKIFEDPEHPHHEHAMQLLLEEDIVGRNLLYAACMAGKSDVIRALAKYGVNLNEKTARGYTLLHCAAAWGRLETLKALVELDVDIEALNFRGEKARDVADRYSQTECVHFLDWADARMILKKFITKSSLIITDPEKGPGKLLKEDKNAILNACRTKNEWLETHPEATISELFEQKQQLEDIVTPILIKMSTPRSTGKMQHKRCCCFPANIPGA", "length": 263, "header": "tr|A0A9J7GZV1-1|A0A9J7GZV1_CRIGR Isoform 1 of Ankyrin repeat domain-containing protein 45 OS=Cricetulus griseus OX=10029 GN=Ankrd45 PE=4 SV=1 CANONICAL=A0A9J7GZV1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GZV1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZV1/entry#A0A9J7GZV1-1", "sequence": { "sequence": "MELEGIPEPEGSEKSVVSSQEEYEESQEAEERGLENPLLQPALRGDVEGLQKIFEDPEHPHHEHAMQLLLEEDIVGRNLLYAACMAGKSDVIRALAKYGVNLNEKTARGYTLLHCAAAWGRLETLKALVELDVDIEALNFRGEKARDVADRYSQTECVHFLDWADARMILKKFITKSSLIITDPEKGPGKLLKEDKNAILNACRTKNEWLETHPEATISELFEQKQQLEDIVTPILIKMSTPRSTGKMQHKRCCCFPANIPGA", "length": 263, "header": "tr|A0A9J7GZV1-1|A0A9J7GZV1_CRIGR Isoform 1 of Ankyrin repeat domain-containing protein 45 OS=Cricetulus griseus OX=10029 GN=Ankrd45 PE=4 SV=1 CANONICAL=A0A9J7GZV1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GZV1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZV1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GZV1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZV1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100755441", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755441", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7GZW1-1", "uniprot_ac": "A0A9J7GZW1", "uniprot_id": "A0A9J7GZW1_CRIGR", "mass": { "chemical_mass": 99957.0, "monoisotopic_mass": 99957.0 }, "refseq": { "ac": "XP_035301727", "name": "inactive dipeptidyl peptidase 10 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035301727" }, "gene_names": [ { "name": "Dpp10", "type": "recommended", "evidence": [ { "id": "A0A9J7GZW1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZW1" } ] }, { "name": "Dpp10", "type": "synonym", "evidence": [ { "id": "XP_035301727", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035301727" } ] } ], "protein_names": [ { "name": "Inactive dipeptidyl peptidase 10 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7GZW1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZW1/entry#names_and_taxonomy" } ] }, { "name": "inactive dipeptidyl peptidase 10 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035301727", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035301727" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 19% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035301727", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035301727" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GZW1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZW1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Dpp10", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZW1", "locus": {} } ], "crossref": [ { "id": "A0A9J7GZW1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7GZW1", "database": "AlphaFoldDB", "categories": [] }, { "id": "100761750", "url": "https://www.ncbi.nlm.nih.gov/gene/100761750", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001375", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001375", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002469", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002469", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029058", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029058", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050278", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050278", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100761750", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761750", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GZW1", "url": "https://www.orthodb.org/?gene=A0A9J7GZW1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11731", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11731", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11731:SF21", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11731:SF21", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00326", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00326", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00930", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00930", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035301727", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035301727", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GZW1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GZW1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZW1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPAKSNINPQTAASNNSTPTPFLTDQPKITAIRKRLHQTIPPPPLKQWQSLRQGQELIWITIAALNSRGEGGVPTFEGPKRLFGYNFCSGGKLSNSEKNDIDFNSGSERYTKSKRKKGFAEASVKVLLQRKIQALLCAKWEKSGLPVENVPSTQYFIIMMYFPTGYVFVVADTDVVYKTDNGHVIKLNTETNATTLLLENTTFVTFKASRHSVSPDLKYVLLAYDVKQIFHYSFTASYLIYNIHTGEVWELNPPEVEDSVLQYAAWGVQGQQLIYIFENNIYYQPDIKSSSLRLTSSGKEGIVFNGIADWLYEEELLHSHIAHWWSPDGERLAFLMINDSLVPNMVIPRFTGALYPKARQYPYPKAGQVNPTVKLYVVNLYGPTHTLELMPPDIFKSREYYITMVKWVSNTRTVVRWLNRPQNISILTVCESTTGACSRKYEMTSDTWLSKQNEEPVFSRDGSKFFMTVPVKQGGRGEFHHIAMFLVQSKSEQITVRHLTSGNWEVIRILAYDETTQKIYFLSTEFSPRGRQLYSASTEGQLNRDCISCNFMKDDCTYFDASFSPMNQHFLLFCEGPRVPVVSLHSTDNPSKYFILESNSRMKEMIQKKKLAKSEIKILHIDDYELPLQLSFPKDFMEKNQYALLLIMDEEPGGQMVTDKFHVDWDSVLIDTDNVIVARFDGRGSGFQGLKVLQEIHRRIGSVEAKDQVAAVKYLLKLPYIDSKRLSIFGKGYGGYVASMILKSDEQLFKCGAVVAPISDMKLYASAFSERYLGMPSKEESTYQASSVLHNIHGLKEENILIIHGTADTKVHFQHSAELIKHLIKAGVNYTLQVYPDEGYHVSDKSKHHFYSTILRFFSDCLKEEISVLPPEPEEDE", "length": 877, "header": "tr|A0A9J7GZW1-1|A0A9J7GZW1_CRIGR Isoform 1 of Inactive dipeptidyl peptidase 10 isoform X2 OS=Cricetulus griseus OX=10029 GN=Dpp10 PE=4 SV=1 CANONICAL=A0A9J7GZW1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GZW1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZW1/entry#A0A9J7GZW1-1", "sequence": { "sequence": "MPAKSNINPQTAASNNSTPTPFLTDQPKITAIRKRLHQTIPPPPLKQWQSLRQGQELIWITIAALNSRGEGGVPTFEGPKRLFGYNFCSGGKLSNSEKNDIDFNSGSERYTKSKRKKGFAEASVKVLLQRKIQALLCAKWEKSGLPVENVPSTQYFIIMMYFPTGYVFVVADTDVVYKTDNGHVIKLNTETNATTLLLENTTFVTFKASRHSVSPDLKYVLLAYDVKQIFHYSFTASYLIYNIHTGEVWELNPPEVEDSVLQYAAWGVQGQQLIYIFENNIYYQPDIKSSSLRLTSSGKEGIVFNGIADWLYEEELLHSHIAHWWSPDGERLAFLMINDSLVPNMVIPRFTGALYPKARQYPYPKAGQVNPTVKLYVVNLYGPTHTLELMPPDIFKSREYYITMVKWVSNTRTVVRWLNRPQNISILTVCESTTGACSRKYEMTSDTWLSKQNEEPVFSRDGSKFFMTVPVKQGGRGEFHHIAMFLVQSKSEQITVRHLTSGNWEVIRILAYDETTQKIYFLSTEFSPRGRQLYSASTEGQLNRDCISCNFMKDDCTYFDASFSPMNQHFLLFCEGPRVPVVSLHSTDNPSKYFILESNSRMKEMIQKKKLAKSEIKILHIDDYELPLQLSFPKDFMEKNQYALLLIMDEEPGGQMVTDKFHVDWDSVLIDTDNVIVARFDGRGSGFQGLKVLQEIHRRIGSVEAKDQVAAVKYLLKLPYIDSKRLSIFGKGYGGYVASMILKSDEQLFKCGAVVAPISDMKLYASAFSERYLGMPSKEESTYQASSVLHNIHGLKEENILIIHGTADTKVHFQHSAELIKHLIKAGVNYTLQVYPDEGYHVSDKSKHHFYSTILRFFSDCLKEEISVLPPEPEEDE", "length": 877, "header": "tr|A0A9J7GZW1-1|A0A9J7GZW1_CRIGR Isoform 1 of Inactive dipeptidyl peptidase 10 isoform X2 OS=Cricetulus griseus OX=10029 GN=Dpp10 PE=4 SV=1 CANONICAL=A0A9J7GZW1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GZW1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZW1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035301989", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035301989" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H0B8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0B8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Zbtb46", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0B8", "locus": {} } ], "crossref": [ { "id": "A0A9J7H0B8", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H0B8", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd18230", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18230", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100762624", "url": "https://www.ncbi.nlm.nih.gov/gene/100762624", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000210", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000210", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050457", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050457", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100762624", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762624", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H0B8", "url": "https://www.orthodb.org/?gene=A0A9J7H0B8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46105", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46105", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46105:SF21", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46105:SF21", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00651", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00651", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035301989", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035301989", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H0B8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0B8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H0B8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0B8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNNRKEDMEITSHYRHLLRELNEQRQHGVLCDVCVVVEGKVFKAHKNVLLGSSRYFKTLYCQVQKTSDQATVTHLDIVTAQGFKAIIDFMYSAHLALTSRNVIEVMSAASFLQMTDIVQACHDFIKAALDISIKSDASDELSEFEIGTPASNSTEALISAVMAGRSISPWLARRTSPANSSGDSAIASCHEGGSSYGKEDQEPKADGPDDISSQALWPGDVGYGSLHIKEEQVSPSHYGGSELPSSKDTAIQNSLSEQGAGDGWQPTGRRKNRKNKETVRHITQQVEEDSRAGSPVPSFLPTSGWPFSSRDSNMDLTVTEASSSDSRGERAELYAHIDEGLLGGETSYLGPPLTPEKDEALHQATAVANLRAALMSKNSLLSLKADVLGDDGSLLFEYLPKGAHSLSRKCNLWCVTVSCFDF", "length": 422, "header": "tr|A0A9J7H0B8-1|A0A9J7H0B8_CRIGR Isoform 1 of Zinc finger and BTB domain-containing protein 46 OS=Cricetulus griseus OX=10029 GN=Zbtb46 PE=4 SV=1 CANONICAL=A0A9J7H0B8-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H0B8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0B8/entry#A0A9J7H0B8-1", "sequence": { "sequence": "MNNRKEDMEITSHYRHLLRELNEQRQHGVLCDVCVVVEGKVFKAHKNVLLGSSRYFKTLYCQVQKTSDQATVTHLDIVTAQGFKAIIDFMYSAHLALTSRNVIEVMSAASFLQMTDIVQACHDFIKAALDISIKSDASDELSEFEIGTPASNSTEALISAVMAGRSISPWLARRTSPANSSGDSAIASCHEGGSSYGKEDQEPKADGPDDISSQALWPGDVGYGSLHIKEEQVSPSHYGGSELPSSKDTAIQNSLSEQGAGDGWQPTGRRKNRKNKETVRHITQQVEEDSRAGSPVPSFLPTSGWPFSSRDSNMDLTVTEASSSDSRGERAELYAHIDEGLLGGETSYLGPPLTPEKDEALHQATAVANLRAALMSKNSLLSLKADVLGDDGSLLFEYLPKGAHSLSRKCNLWCVTVSCFDF", "length": 422, "header": "tr|A0A9J7H0B8-1|A0A9J7H0B8_CRIGR Isoform 1 of Zinc finger and BTB domain-containing protein 46 OS=Cricetulus griseus OX=10029 GN=Zbtb46 PE=4 SV=1 CANONICAL=A0A9J7H0B8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7H0D2-1", "uniprot_ac": "A0A9J7H0D2", "uniprot_id": "A0A9J7H0D2_CRIGR", "mass": { "chemical_mass": 40297.0, "monoisotopic_mass": 40297.0 }, "refseq": { "ac": "XP_035300034", "name": "uncharacterized protein LOC113835357 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300034" }, "gene_names": [ { "name": "LOC113835357", "type": "recommended", "evidence": [ { "id": "A0A9J7H0D2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0D2" } ] }, { "name": "LOC113835357", "type": "synonym", "evidence": [ { "id": "XP_035300034", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300034" } ] } ], "protein_names": [ { "name": "Uncharacterized protein LOC113835357 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7H0D2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0D2/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein LOC113835357 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035300034", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300034" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 48% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035300034", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300034" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H0D2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0D2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113835357", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0D2", "locus": {} } ], "crossref": [ { "id": "A0A9J7H0D2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H0D2", "database": "AlphaFoldDB", "categories": [] }, { "id": "113835357", "url": "https://www.ncbi.nlm.nih.gov/gene/113835357", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013106", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013106", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050150", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050150", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113835357", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113835357", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H0D2", "url": "https://www.orthodb.org/?gene=A0A9J7H0D2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23267", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23267", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07686", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07686", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035300034", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300034", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H0D2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0D2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H0D2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0D2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MISHKAEATLYSFKPKGYMRHSLFLAVKLITVTNFVTTTTYVSMFYFAEVLSKLSNLEKQTWTVSHGLGFSCDHSSGSLHRSGAFLSWSGYATVYISFCFATKHLIYHLFAGGISQAIVIQASSLTTSPGGTVTLTCGSSTGAVTTNNYANWVQEKPNQVHTDMIAATSRRATGVPAQFSGSLLGDKAALTITGAQPEDEGIYYCALWNVTISQAAVIQESSLTTSPGGTVTFTCASRTGAVTTSNYANWVQEKSHQVHTGLIGGTTYRAPDVPARFSGSLIGDKAALTITGAQPEDEAIYYCALWYSDQFHSDTHRWGSETQSPCCRLITAVFLPYGYISLGSEYMFSIIVEKVIRLLCEATNCLFQYIL", "length": 371, "header": "tr|A0A9J7H0D2-1|A0A9J7H0D2_CRIGR Isoform 1 of Uncharacterized protein LOC113835357 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC113835357 PE=4 SV=1 CANONICAL=A0A9J7H0D2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H0D2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0D2/entry#A0A9J7H0D2-1", "sequence": { "sequence": "MISHKAEATLYSFKPKGYMRHSLFLAVKLITVTNFVTTTTYVSMFYFAEVLSKLSNLEKQTWTVSHGLGFSCDHSSGSLHRSGAFLSWSGYATVYISFCFATKHLIYHLFAGGISQAIVIQASSLTTSPGGTVTLTCGSSTGAVTTNNYANWVQEKPNQVHTDMIAATSRRATGVPAQFSGSLLGDKAALTITGAQPEDEGIYYCALWNVTISQAAVIQESSLTTSPGGTVTFTCASRTGAVTTSNYANWVQEKSHQVHTGLIGGTTYRAPDVPARFSGSLIGDKAALTITGAQPEDEAIYYCALWYSDQFHSDTHRWGSETQSPCCRLITAVFLPYGYISLGSEYMFSIIVEKVIRLLCEATNCLFQYIL", "length": 371, "header": "tr|A0A9J7H0D2-1|A0A9J7H0D2_CRIGR Isoform 1 of Uncharacterized protein LOC113835357 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC113835357 PE=4 SV=1 CANONICAL=A0A9J7H0D2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7H0I8-1", "uniprot_ac": "A0A9J7H0I8", "uniprot_id": "A0A9J7H0I8_CRIGR", "mass": { "chemical_mass": 28493.0, "monoisotopic_mass": 28493.0 }, "refseq": { "ac": "XP_035300130", "name": "basic salivary proline-rich protein 2-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300130" }, "gene_names": [ { "name": "LOC118238748", "type": "recommended", "evidence": [ { "id": "A0A9J7H0I8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0I8" } ] }, { "name": "LOC118238748", "type": "synonym", "evidence": [ { "id": "XP_035300130", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300130" } ] } ], "protein_names": [ { "name": "Basic salivary proline-rich protein 2-like", "type": "synonym", "evidence": [ { "id": "A0A9J7H0I8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0I8/entry#names_and_taxonomy" } ] }, { "name": "basic salivary proline-rich protein 2-like", "type": "synonym", "evidence": [ { "id": "XP_035300130", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300130" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 5% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. 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"url": "https://www.uniprot.org/uniprotkb/A0A9J7H0R9" } ] }, { "name": "LOC113836230", "type": "synonym", "evidence": [ { "id": "XP_035301770", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035301770" } ] } ], "protein_names": [ { "name": "Histone deacetylase 9-like", "type": "synonym", "evidence": [ { "id": "A0A9J7H0R9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0R9/entry#names_and_taxonomy" } ] }, { "name": "histone deacetylase 9-like", "type": "synonym", "evidence": [ { "id": "XP_035301770", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035301770" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed 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This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035301770", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035301770" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H0R9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0R9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113836230", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0R9", "locus": {} } ], "crossref": [ { "id": "A0A9J7H0R9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H0R9", "database": "AlphaFoldDB", "categories": [] }, { "id": "113836230", "url": "https://www.ncbi.nlm.nih.gov/gene/113836230", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR023696", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023696", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037138", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037138", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113836230", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113836230", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H0R9", "url": "https://www.orthodb.org/?gene=A0A9J7H0R9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "XP_035301770", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035301770", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H0R9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0R9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H0R9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0R9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MHVRAGLGGSSADDALITSLVCYSALRVPTQAEIHIAIHQAKDETVETALLAAFTFCKMQCPPLLESSHSRGLSVHQARLAAVAIDGLENHGLISGSHSSPAASVSPHPTADCPHQPASTTGIAYDPLMLKHQCICGNSTTHPEHAGRIQSIWSRLQETGLLNKCEVFAVPCSSWLLSRDISKG", "length": 184, "header": "tr|A0A9J7H0R9-1|A0A9J7H0R9_CRIGR Isoform 1 of Histone deacetylase 9-like OS=Cricetulus griseus OX=10029 GN=LOC113836230 PE=4 SV=1 CANONICAL=A0A9J7H0R9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H0R9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0R9/entry#A0A9J7H0R9-1", "sequence": { "sequence": "MHVRAGLGGSSADDALITSLVCYSALRVPTQAEIHIAIHQAKDETVETALLAAFTFCKMQCPPLLESSHSRGLSVHQARLAAVAIDGLENHGLISGSHSSPAASVSPHPTADCPHQPASTTGIAYDPLMLKHQCICGNSTTHPEHAGRIQSIWSRLQETGLLNKCEVFAVPCSSWLLSRDISKG", "length": 184, "header": "tr|A0A9J7H0R9-1|A0A9J7H0R9_CRIGR Isoform 1 of Histone deacetylase 9-like OS=Cricetulus griseus OX=10029 GN=LOC113836230 PE=4 SV=1 CANONICAL=A0A9J7H0R9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H0R9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0R9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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domain-containing protein 9 isoform X3", "type": "synonym", "evidence": [ { "id": "A0A9J7H4T2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4T2/entry#names_and_taxonomy" } ] }, { "name": "caspase recruitment domain-containing protein 9 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_035302441", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302441" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035302441", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302441" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H4T2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4T2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Card9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4T2", "locus": {} } ], "crossref": [ { "id": "A0A9J7H4T2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H4T2", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd08809", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08809", "database": "CDD", "categories": [ "Protein Classification" ] }, 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"PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14559:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14559:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00619", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00619", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035302441", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302441", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H0S0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0S0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H0S0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0S0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H343", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H343", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H343-1", "url": 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This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035300258", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300258" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H0S1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0S1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100773244", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0S1", "locus": {} } ], "crossref": [ { "id": "A0A9J7H0S1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H0S1", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd03590", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03590", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100773244", "url": "https://www.ncbi.nlm.nih.gov/gene/100773244", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001304", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001304", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016186", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016186", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016187", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016187", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018378", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018378", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050111", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050111", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100773244", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773244", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H0S1", "url": "https://www.orthodb.org/?gene=A0A9J7H0S1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22803", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22803", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00059", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00059", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035300258", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300258", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H0S1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0S1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H0S1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0S1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSDTTEPRLQQLGTLVSKVPSSQVQDKIYQELMQLKIDVHDGLCQPCPRDWTFFHGNCYFFSKSQRNWHNSVTACQEVGAQLVIVETDEEQTFLQQTSKAKGPTWMGLSDMHNEATWHWVDGSTLSPSFEQYWNKGEPNNVGDEDCAEFSKDGWNDLKCDSLNFWICKKASTSSCTTK", "length": 178, "header": "tr|A0A9J7H0S1-1|A0A9J7H0S1_CRIGR Isoform 1 of CD209 antigen-like protein D OS=Cricetulus griseus OX=10029 GN=LOC100773244 PE=4 SV=1 CANONICAL=A0A9J7H0S1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H0S1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H0S1/entry#A0A9J7H0S1-1", "sequence": { "sequence": "MSDTTEPRLQQLGTLVSKVPSSQVQDKIYQELMQLKIDVHDGLCQPCPRDWTFFHGNCYFFSKSQRNWHNSVTACQEVGAQLVIVETDEEQTFLQQTSKAKGPTWMGLSDMHNEATWHWVDGSTLSPSFEQYWNKGEPNNVGDEDCAEFSKDGWNDLKCDSLNFWICKKASTSSCTTK", "length": 178, "header": "tr|A0A9J7H0S1-1|A0A9J7H0S1_CRIGR Isoform 1 of CD209 antigen-like protein D OS=Cricetulus griseus OX=10029 GN=LOC100773244 PE=4 SV=1 CANONICAL=A0A9J7H0S1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Isoform 1 of Maestro heat-like repeat-containing protein family member 9 OS=Cricetulus griseus OX=10029 GN=Mroh9 PE=4 SV=1 CANONICAL=A0A9J7H148-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035300557", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300557" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H191", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H191" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Elmod1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H191", "locus": {} } ], "crossref": [ { "id": "A0A9J7H191", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H191", "database": "AlphaFoldDB", "categories": [] }, { "id": "100769312", "url": "https://www.ncbi.nlm.nih.gov/gene/100769312", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006816", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006816", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050868", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050868", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100769312", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769312", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H191", "url": "https://www.orthodb.org/?gene=A0A9J7H191", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12771", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12771", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12771:SF18", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12771:SF18", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04727", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04727", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035300557", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300557", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H191", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H191", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H191-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H191-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLIQVCLYFYCKFLWRCMKFVMRKLTGRCELQRICYSTKPGASRTMKIETSLRDSKSKLLQTSVSVHPDAIEKTIDDIMELKQINPDINPQLGISLQACLLQIVGYRNLIADVEKLRREPYDSDNPQHEEMLLKLWEFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLGLYNLQYFAERDATVAQQVLSDSLHPKCRDITKEEISKFSKAEWEKKRMDKAIGYSFAIVGINITDLAYNLLVSGALKTHFYNIAPEAPTLSHFQQTFCYLMHEFHKFWIEEDPMDIMEFNRVREKFRKRIIKQLQNPDMALCPHFAASEGLINM", "length": 328, "header": "tr|A0A9J7H191-1|A0A9J7H191_CRIGR Isoform 1 of ELMO domain-containing protein 1 OS=Cricetulus griseus OX=10029 GN=Elmod1 PE=4 SV=1 CANONICAL=A0A9J7H191-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H191-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H191/entry#A0A9J7H191-1", "sequence": { "sequence": "MLIQVCLYFYCKFLWRCMKFVMRKLTGRCELQRICYSTKPGASRTMKIETSLRDSKSKLLQTSVSVHPDAIEKTIDDIMELKQINPDINPQLGISLQACLLQIVGYRNLIADVEKLRREPYDSDNPQHEEMLLKLWEFLKPNTPLESRISKQWCEIGFQGDDPKTDFRGMGLLGLYNLQYFAERDATVAQQVLSDSLHPKCRDITKEEISKFSKAEWEKKRMDKAIGYSFAIVGINITDLAYNLLVSGALKTHFYNIAPEAPTLSHFQQTFCYLMHEFHKFWIEEDPMDIMEFNRVREKFRKRIIKQLQNPDMALCPHFAASEGLINM", "length": 328, "header": "tr|A0A9J7H191-1|A0A9J7H191_CRIGR Isoform 1 of ELMO domain-containing protein 1 OS=Cricetulus griseus OX=10029 GN=Elmod1 PE=4 SV=1 CANONICAL=A0A9J7H191-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"MVGPEKEQSWIPKIFRKKVCTTFIEDLGDDSGGTLCQCGRPRNDHSSVAMEDAFGAAVVSEWNTDEHTTEKPTDAYGDLDFMYTGRRPSNFLRLSDRTDPATVYSLVTRSWGFRAPNLVVSVLGGSGGPVLQTWLQDLLRRGLVRAAQSTGAWIVTGGLHTGIGRHVGVAVRDHQMASTGGSKVVAMGVAPWGVVRNREMLINPKGLFPARYKWRGDPEDGVEFPLDYNYSAFFLVDDGTHGRLGGENRFRLQFESYVAQQKTGVGGTGIDIPVLLLLIDGDEKMLKRIEDATQAQLPCLLVAGSGGAADCLVETLEDTLAPGSGGLRRGEARDRIRRYFPKGDPEVLQAQVERIMTRKELLTVYSSEDGSEEFETIVLRALVNACGSSEASAYLDELRLAVAWNRVDIAQSELFRGDIQWRSFHLEASLMDALLNDRPEFVRLLISHGLSLGHFLTPQRLAQLYSAVSPNSLIRSLLDQASHCGGGKALPIKDGATELRPPNVGQVLRTLLGETCAPRYPARNIRDSQLGQDCRENAHLLLDWATMQSSMDTNFEQAPWSDLLIWALLLNRAQMAIYFWEKGSNSVASALGACLLLRVMARLEWEAEEASRRKDLAAKFEGMSVDLFGECYHNSEERAARLLLRRCPLWGEATCLQLAMQADARSFFAQDGVQSLLTQKWWGDMDSTTPIWALLLAFFCPPLIYTNLITFRKSEEESTQKNPDFDMDSSINGAGPIGPSEPSAKVALERRRRPVRARCFGGCAKRWSHFWGSPVTAFLGNVISYLLFLLLFARVLLVDFQPGTPGVFELLLYFWVFTLLCEELRQGLGGGWGSLASGGPGPGKVPLRHRLHLYLSDSWNQCDLLALTCFLLGVGCRLTPGLCDCLLRLTPGLYDLGHTVLCLDFMIFTLRLLHIFTVNKQLGPKIVIVSKMMKDVFFFLFFLCVWLVAYGVATEGILRPRDRNLPSILRRVFYRPYLQIFGQIPQEEMDGREGLSSQ", "length": 998, "header": "tr|A0A9J7H1I8-1|A0A9J7H4I9_CRIGR Computationally mapped isoform of Transient receptor potential cation channel subfamily M member 4 isoform X2 OS=Cricetulus griseus OX=10029 GN=Trpm4 PE=4 SV=1 CANONICAL=A0A9J7H4I9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H4I9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4I9/entry#A0A9J7H4I9-1", "sequence": { "sequence": "MVGPEKEQSWIPKIFRKKVCTTFIEDLGDDSGGTLCQCGRPRNDHSSVAMEDAFGAAVVSEWNTDEHTTEKPTDAYGDLDFMYTGRRPSNFLRLSDRTDPATVYSLVTRSWGFRAPNLVVSVLGGSGGPVLQTWLQDLLRRGLVRAAQSTGAWIVTGGLHTGIGRHVGVAVRDHQMASTGGSKVVAMGVAPWGVVRNREMLINPKGLFPARYKWRGDPEDGVEFPLDYNYSAFFLVDDGTHGRLGGENRFRLQFESYVAQQKTGVGGTGIDIPVLLLLIDGDEKMLKRIEDATQAQLPCLLVAGSGGAADCLVETLEDTLAPGSGGLRRGEARDRIRRYFPKGDPEVLQAQVERIMTRKELLTVYSSEDGSEEFETIVLRALVNACGSSEASAYLDELRLAVAWNRVDIAQSELFRGDIQWRSFHLEASLMDALLNDRPEFVRLLISHGLSLGHFLTPQRLAQLYSAVSPNSLIRSLLDQASHCGGGKALPIKDGATELRPPNVGQVLRTLLGETCAPRYPARNIRDSQLGQDCRENAHLLLDWATMQSSMDTNFEQAPWSDLLIWALLLNRAQMAIYFWEKGSNSVASALGACLLLRVMARLEWEAEEASRRKDLAAKFEGMSVDLFGECYHNSEERAARLLLRRCPLWGEATCLQLAMQADARSFFAQDGVQSLLTQKWWGDMDSTTPIWALLLAFFCPPLIYTNLITFRKSEEESTQKNPDFDMDSSINGAGPIGPSEPSAKVALERRRRPVRARCFGGCAKRWSHFWGSPVTAFLGNVISYLLFLLLFARVLLVDFQPGTPGVFELLLYFWVFTLLCEELRQGLGGGWGSLASGGPGPGKVPLRHRLHLYLSDSWNQCDLLALTCFLLGVGCRLTPGLCDCLLRLTPGLYDLGHTVLCLDFMIFTLRLLHIFTVNKQLGPKIVIVSKMMKDVFFFLFFLCVWLVAYGVATEGILRPRDRNLPSILRRVFYRPYLQIFGQIPQEEMDVTLMNPGNCSEEQGSWAYPEGRVSGFCVSQYANWLVVLLLVVFLLVANILLLNLLIAMFSYTFSKVQDNSDLYWKAQRYSLIREFHSRPALAPPLIIISHVRLLIRWLHRCRRAHLPASPAFEHFRVYLSKEAERKLLTWESVHKENFLLAQARDKRDSDSERLKRTSQKVDTALKQLGQIREYERRLKGLEREVQHCTQVLSWVAEALSSSALLPPGGPPPPSPPGSKD", "length": 1220, "header": "tr|A0A9J7H4I9-1|A0A9J7H4I9_CRIGR Isoform 1 of Transient receptor potential cation channel subfamily M member 4 isoform X2 OS=Cricetulus griseus OX=10029 GN=Trpm4 PE=4 SV=1 CANONICAL=A0A9J7H4I9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JUC8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4I9/entry#A0A9J7JUC8-1", "sequence": { "sequence": "MVGPEKEQSWIPKIFRKKVCTTFIEDLGDDSGGTLCQCGRPRNDHSSVAMEDAFGAAVVSEWNTDEHTTEKPTDAYGDLDFMYTGRRPSNFLRLSDRTDPATVYSLVTRSWGFRAPNLVVSVLGGSGGPVLQTWLQDLLRRGLVRAAQSTGAWIVTGGLHTGIGRHVGVAVRDHQMASTGGSKVVAMGVAPWGVVRNREMLINPKGLFPARYKWRGDPEDGVEFPLDYNYSAFFLVDDGTHGRLGGENRFRLQFESYVAQQKTGVGGTGIDIPVLLLLIDGDEKMLKRIEDATQAQLPCLLVAGSGGAADCLVETLEDTLAPGSGGLRRGEARDRIRRYFPKGDPEVLQAQVERIMTRKELLTVYSSEDGSEEFETIVLRALVNACGSSEASAYLDELRLAVAWNRVDIAQSELFRGDIQWRSFHLEASLMDALLNDRPEFVRLLISHGLSLGHFLTPQRLAQLYSAVSPNSLIRSLLDQASHCGGGKALPIKDGATELRPPNVGQVLRTLLGETCAPRYPARNIRDSQLGQDCRENAHLLLDWATMQSSMDTNFEQAPWSDLLIWALLLNRAQMAIYFWEKGSNSVASALGACLLLRVMARLEWEAEEASRRKDLAAKFEGMSVDLFGECYHNSEERAARLLLRRCPLWGEATCLQLAMQADARSFFAQDGVQSLLTQKWWGDMDSTTPIWALLLAFFCPPLIYTNLITFRKSEEESTQKNPDFDMDSSINGAGPIGPSEPSAKVALERRRRPVRARCFGGCAKRWSHFWGSPVTAFLGNVISYLLFLLLFARVLLVDFQPGTPGVFELLLYFWVFTLLCEELRQGLGGGWGSLASGGPGPGKVPLRHRLHLYLSDSWNQCDLLALTCFLLGVGCRLTPGLYDLGHTVLCLDFMIFTLRLLHIFTVNKQLGPKIVIVSKMMKDVFFFLFFLCVWLVAYGVATEGILRPRDRNLPSILRRVFYRPYLQIFGQIPQEEMDVTLMNPGNCSEEQGSWAYPEGRVSGFCVSQYANWLVVLLLVVFLLVANILLLNLLIAMFSYTFSKVQDNSDLYWKAQRYSLIREFHSRPALAPPLIIISHVRLLIRWLHRCRRAHLPASPAFEHFRVYLSKEAERKLLTWESVHKENFLLAQARDKRDSDSERLKRTSQKVDTALKQLGQIREYERRLKGLEREVQHCTQVLSWVAEALSSSALLPPGGPPPPSPPGSKD", "length": 1209, "header": "tr|A0A9J7JUC8-1|A0A9J7H4I9_CRIGR Computationally mapped isoform of Transient receptor potential cation channel subfamily M member 4 isoform X2 OS=Cricetulus griseus OX=10029 GN=Trpm4 PE=4 SV=1 CANONICAL=A0A9J7H4I9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K6X4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4I9/entry#A0A9J7K6X4-1", "sequence": { "sequence": "MASTGGSKVVAMGVAPWGVVRNREMLINPKGLFPARYKWRGDPEDGVEFPLDYNYSAFFLVDDGTHGRLGGENRFRLQFESYVAQQKTGVGGTGIDIPVLLLLIDGDEKMLKRIEDATQAQLPCLLVAGSGGAADCLVETLEDTLAPGSGGLRRGEARDRIRRYFPKGDPEVLQAQVERIMTRKELLTVYSSEDGSEEFETIVLRALVNACGSSEASAYLDELRLAVAWNRVDIAQSELFRGDIQWRSFHLEASLMDALLNDRPEFVRLLISHGLSLGHFLTPQRLAQLYSAVSPNSLIRSLLDQASHCGGGKALPIKDGATELRPPNVGQVLRTLLGETCAPRYPARNIRDSQLGQDCRENAHLLLDWATMQSSMDTNFEQAPWSDLLIWALLLNRAQMAIYFWEKGSNSVASALGACLLLRVMARLEWEAEEASRRKDLAAKFEGMSVDLFGECYHNSEERAARLLLRRCPLWGEATCLQLAMQADARSFFAQDGVQSLLTQKWWGDMDSTTPIWALLLAFFCPPLIYTNLITFRKSEEESTQKNPDFDMDSSINGAGPIGPSEPSAKVALERRRRPVRARCFGGCAKRWSHFWGSPVTAFLGNVISYLLFLLLFARVLLVDFQPGTPGVFELLLYFWVFTLLCEELRQGLGGGWGSLASGGPGPGKVPLRHRLHLYLSDSWNQCDLLALTCFLLGVGCRLTPGLCDCLLRLTPGLYDLGHTVLCLDFMIFTLRLLHIFTVNKQLGPKIVIVSKMMKDVFFFLFFLCVWLVAYGVATEGILRPRDRNLPSILRRVFYRPYLQIFGQIPQEEMDVTLMNPGNCSEEQGSWAYPEGRVSGFCVSQYANWLVVLLLVVFLLVANILLLNLLIAMFSYTFSKVQDNSDLYWKAQRYSLIREFHSRPALAPPLIIISHVRLLIRWLHRCRRAHLPASPAFEHFRVYLSKEAERKLLTWESVHKENFLLAQARDKRDSDSERLKRTSQKVDTALKQLGQIREYERRLKGLEREVQHCTQVLSWVAEALSSSALLPPGGPPPPSPPGSKD", "length": 1045, "header": "tr|A0A9J7K6X4-1|A0A9J7H4I9_CRIGR Computationally mapped isoform of Transient receptor potential cation channel subfamily M member 4 isoform X2 OS=Cricetulus griseus OX=10029 GN=Trpm4 PE=4 SV=1 CANONICAL=A0A9J7H4I9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JUC8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUC8" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JUC8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JUC8" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100754433", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754433", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H4I9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4I9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "calcium-activated cation channel activity", "id": "GO:0005227", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005227", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H4I9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4I9" } ], "pmid": "" }, { "name": "ligand-gated calcium channel activity", "id": "GO:0099604", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0099604", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H4I9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4I9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 229, "end_pos": 231, "annotation": "n_glycosylation_sequon" }, { "start_pos": 998, "end_pos": 1000, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7H4I9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4I9" }, { "id": "PF00520", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00520" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ion transport", "eco_id": "ECO_0000259", "start_pos": 784, "end_pos": 1060, "start_aa": "Ser", "end_aa": "Ser", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7H4I9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4I9" }, { "id": "PF18139", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18139" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TRPM SLOG", "eco_id": "ECO_0000259", "start_pos": 90, "end_pos": 313, "start_aa": "Asn", "end_aa": "Val", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7H4I9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4I9" }, { "id": "PF25508", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25508" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TRPM-like", "eco_id": "ECO_0000259", "start_pos": 413, "end_pos": 670, "start_aa": "Glu", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 229, "end_pos": 231 }, { "start_pos": 998, "end_pos": 1000 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7H1J4-1", "uniprot_ac": "A0A9J7H1J4", "uniprot_id": "A0A9J7H1J4_CRIGR", "mass": { "chemical_mass": 14074.0, "monoisotopic_mass": 14074.0 }, "refseq": { "ac": "XP_035300795", "name": "basic leucine zipper transcriptional factor ATF-like 3 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300795" }, "gene_names": [ { "name": "Batf3", "type": "recommended", "evidence": [ { "id": "A0A9J7H1J4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1J4" } ] }, { "name": "Batf3", "type": "synonym", "evidence": [ { "id": "XP_035300795", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300795" } ] } ], "protein_names": [ { "name": "Basic leucine zipper transcriptional factor ATF-like 3 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7H1J4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1J4/entry#names_and_taxonomy" } ] }, { "name": "basic leucine zipper transcriptional factor ATF-like 3 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035300795", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035300795" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. 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"https://www.ebi.ac.uk/interpro/entry/pfam/PF17057" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Poxin-Schlafen/Schlafen-like N-terminal", "eco_id": "ECO_0000259", "start_pos": 86, "end_pos": 207, "start_aa": "Ser", "end_aa": "Phe", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7H1L7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1L7" }, { "id": "PF04326", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04326" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Schlafen AlbA-2", "eco_id": "ECO_0000259", "start_pos": 209, "end_pos": 324, "start_aa": "Glu", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 7, 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"publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7H1M0-1", "uniprot_ac": "A0A9J7H1M0", "uniprot_id": "A0A9J7H1M0_CRIGR", "mass": { "chemical_mass": 775621.0, "monoisotopic_mass": 775621.0 }, "refseq": { "ac": "XP_035302956", "name": "fibrous sheath-interacting protein 2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302956" }, "gene_names": [ { "name": "Fsip2", "type": "recommended", "evidence": [ { "id": "A0A9J7H1M0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1M0" } ] }, { "name": "Fsip2", "type": "synonym", "evidence": [ { "id": "XP_035302956", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302956" } ] } ], "protein_names": [ { "name": "Fibrous sheath-interacting protein 2", "type": "synonym", "evidence": [ { "id": "A0A9J7H1M0", "database": "UniProtKB", "url": 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This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035302956", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302956" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H1M0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1M0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Fsip2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1M0", "locus": {} } ], "crossref": [ { "id": "100754113", "url": "https://www.ncbi.nlm.nih.gov/gene/100754113", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR031554", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031554", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038891", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038891", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100754113", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754113", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H1M0", "url": "https://www.orthodb.org/?gene=A0A9J7H1M0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21856", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21856", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21856:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21856:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15783", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15783", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035302956", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302956", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H1M0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1M0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H1M0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1M0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MELYLSACSKTANVAAKKAASSSVAEESQQCGDRAHKTPIPGVGAAQLLDLPLGVKLPMIPGTDTVYFTTNISEKLFRPSYGFNLNDPYCRLLETQYKSLHDPHLRTYYKRKDILRRLKKGGYITSNNKIVCSLRELNKYRQYLTSLKLDFERNYLREQQLITKQLHKLQETSQLPNCSDVTRFQQWLLQDTSQSVKDQERLLRHRYLDMISKELEQLERTAEEQRLLRMDREERRQREYARKKLSLRRKIEEEWKTKEMLLLTKIGEDVKREQRVEEQRRRSREESDRKKQAMLEKKMAYHLQKMQDAGIKDDTGRNAFEYKGENEAPYESPMKKKKKQFDDIKIVYPDGEEKIFKGTSGHVSTAVNQSQSNSKNVTKISVSSVAYQPDIQNSSSEQKRNGVTKKISDEKGTVNTSARNSIISTQNSPTRNARLSHASLGPQKDEKEIQGDWNGRPNKKPSYAGEPGYQGGAPPPGIFSSPVYSNMQQNLQNCLQDKITSEELNSIIQNIMTWVVATVTSILYPAITKYEERVQSNTYPVSDDSDLSSDSSSFCSTCSEGFTYRSYTPKTYQADPCIFAGETPVKKPPTPLKPPSAHVERTVIEKTYHMSEESISSQVNYNETSLEYPFPKIGSSKSDSHLMTSLETSTKISKDATTETDTLEIPLVFDQRAKALDQMKNLKNVFVNFKCHLKGETQLILESIFQEIMSDLSQAIPSLSSVTAEVFVDQCDTEREEMLSNVDICSVASEIVENMLEKLESAVEKQCVQMFSQEDLAVELKPSLSTSGDYLSSLDTKPSEDTLSYTLEPMCDIADDMVHAILEKLMTLASYKKSELPPEDTTNHFQQQINAEPTHKLQKKPDQKRSSPESDAANLIMKEEMQNLISSIFSQSSLVGHVEEAISTILGYVQTELNNERLIASEETVVLLQLLDDVLTQLHPEPAKASVKKHRQPRVRNLPDTEEKYRVTGSRSFNGPRTKRPFPPVNVPGMVLYSEDDDEEIDNLVKSVLDSSFSGEKTKPQEQITNHSATKRDTCFERKRSNKQPTETSQSKAGHHDWGLGLKLSLSGEDIVKTKHCLTNDASIFSQDQKHEIQKASENIVKHILTEMFKDMSSDSSHYSGNKIGEETSDFILEKSQGLQNQEWMEQMFSRSEICAFAHEITDSVINILHKASKYIPHTIKNAISSVHQSCLEHSDTPQTAKEIPTKTPFKVWFDSEKKMKYLSSLNVELEKTSQLRSGECEPKRVNDITDKIINTIFKSLTLFVCPKLQRGNKPSQIEKSLHSQLSTYTMKIVNIVLHAIQNELGLNNINPNTRDTDHIKCHASKGLFADPNEAVDSHICSVDEFMESPLLTCICEMISCTNEDQTNTSTSTDKTLSTLCGSDNVNKQNILSSKQDKTSFRKFMATPCIRHSTLNRKDLKDSPKLKVLDQIGETLHEMLSKLPEAHHDSQPSSSQQNTEKSHKDPLALSNVQLISKTILDYVLAKLCDIDQDKSIVNSELKTASESLDIDNLSFASIMEEMAKCTYMISNTISKMVMGKKEIPKNEAKNDLPVSSKTENSEEMCPDKLKAVASDILNVVFAKLELFAGGNEENVSVLNDENKKETMMDCECESRNSTDSHDKSLQSTLYNHAKKVSSAILKAIQTELNIDPSDCKENIKSSTQETQIFTKIVDLILDVVSSDMFTEPESENRGTENYGYRPIYGNFLPGGAEPESFLDSDDKQNKEFIGDRTSPREETSTFSTDQWILERTLNKIEVKLKEPHKSPIVPIIRNILNEIFQSALINQLNVVSLSHSHFTGRPHNIPVSTIQTSAQFRDPLMGPLVSDTDVTVVVNDVVRTVFHKLFSAAMTEKPVSENRCETIIFSTNVSFREHTYTGNRPVTMLSGNPCDIQSSWNVDKQTKINVVEDIVQAILQNLENFAASKVESLFHPQINFRVPVTLPVQQQEGSLSTALSGNDSYSDKQFPCSSVEHGTPGKMDSWCQLSLSRLNIYAKEVARKILQGIKYELDKEQESPLLTNNVVVSENIASQIVNTVLDIVSCKSKCDKNSSDQDNYSDQQDGIIERLVNKADYRKILEFQIQDTIEGILCDIYENIIHQNNLSFATPTLQYSIPGTHSEVNIQPVVRGTNIIPKVSVPKTDVILVSKDIVNIVLRSLTSLVMLAINAKDPASTRLAFCDMFPKSQCQQSLFITQRTEEKPGHFSHSEDKSLAYADVYQMPMKRKEDTRELTQDPCEENANFITETIFNRLQSFATERINSLISPALQSNKENVFISPKFENGKHDDSIFHEPGQVESGVNVLRLPTTEADPSHELVEPVFSSCGESLETTIHLSQTTLKDYADFIASAILKLIKNDLDLETQSMHTYSNSILFQKNIIVSEIVTSILRILHNKGSVKEFFLPSPENPSCSQLTIPNEVLLGFKEKENTGTLSNPPLEESQMILEKESQRVMLEEIFMRKGESKPKENSKVFSAVEEVLKKLSQNIMEIIGHLPPFNEIPYVVSKSKSKMSVITQKKLFQSHINNVSNDILENILGEMHSVIVTSLYKKTKSRREVEMHDNNDTSAKPPCFKETKLTRKISNTPRFGGPEMHPYADNLNALVLENMFFPYSPLQIGRYLVQIVLDKLSSFVSLHLEERFPFEGSYDDMYLLRLHNSKLSPKNSPRPGCKTSLKARSKVTSLSKFKTKPHLGISGTKSKSKTKLGAVEKTPRENRSQTAIGLPQTPSTEDAKVVLKTKLPTSELRVYAKNIITDILEIIMKELEKVVQNRTVLNTKTLPSGQILEASKIVNAVLQELYATNNHNMASPINVSNLGDHRLSKQNLGAGSPTEQQACFYLENVSSQLEQIFPKEGIFKKMFDKWQTETSDTENEKSKLLTIAENILTEISIKAKDLEYSLSLLNLPPLEDCENRFYDRFKCGATRAEDTKAQINMFGREIVEMLFEKLQLCFLSQMPTQDSKGILTSRKEHVAAKSKHGVPNKHILSGVQTCNKKMKDQVSISPSNQIVQEIVERVLNMLESFVDLKFKHISKYEFSEIVKMPIDNLFQVQQRQLSKKMLPKLQPFRKFGEEPKSSTIISKENVHNTLLQVHSFHSELLTYSVTTVSDMLSIIKNKLDKEISQMEPFPVSTLKENIAASEIIGTLIDQCTNFNESLITNLHNKNWFEGTENVYIVNQVEFASHMKMPASKMRNTSMRSNSPQRSVSGLGLNSEDDTKQKYEITSSSSSHVSSCVENKIKSSDPTGSYNSNAVPLCSRNKAQDQSQTNPNFGLFEGSTSSNNSLPEGSVLQKLFKKANDSTEESLKQAMSFIEMGKGENPRVFHYETTKPTEPNEIKTTASPLKICLAADNIVNTVLSSYGFPQQPHPDESLETVKPFLMSSQNSLSSVCEGQKNENNLLKMWYKRMDCMNEEESEGLEACQGDFSLLHKWENKNSKLTSETLEETDKITFVDHELGPNEMHLVARHVTTSVITYLKHFKDAVSTDGKLSHVSSLPKKNYDSNQPLKRIYSNSSIYQFCEHLSESVICYLISNFSDDTEEGNRDNAWKIQDVISNKNISIHSQVYQSRSISIGELALSIFEVIIEILSNGNIISADMAHQASIKTKYRFCPRVTSSDIDDIFQDLLKGVIFVLSKVLGINHHFENNVRNKTYPIFRNSMPIFNKINTMETQTGPRDWESSPHLIDHHAQRNKLNYLACRLNSLVGNLKSHESKEVVNEVFNIVLDLFLPDEFPDGDMSSGKLARTFLTSNNQQSNRILTNNLGLSPKSIFLLNIVCEKLIRTLLEKCTGATFLEDSSIFREVAEECQHGKLLGSVQGRDFDYLEAPMDCEQFQGDYMADLLENLADVDQDLLSSDCVLNVISHSLVKSLMDKLSHGFQQAPFENKCMSYATREIQPFFPKAKRQELIELGEKNAHVSFMSYDSNFLNRSLNNPNAAGFKMQTPFGKQRAVKPFSLSLPDREETRGMNTIAFRKLCQRGANGGVYSATFLEDIISQLFFKLTTSLWRKNISITETWLNEINTSLINNVVNELNNAQITVLRYPEERLYFPSAHKGCVTKIVDSIYYDVLQQYEFKVTCGDNLPYDDTSVAEQMSNSIFLEIVDYQLPSCFKGKLKSNLYHTLNAEIILHKLQNNLRKFISEPMSSKDYSTMLPHSFLEYVIRRLLAQLIPLPVKPSSLEKQCLMCSNFNEMTNSITNKVMSAISKHKIWFTIYDNQCLHTDKNLQKMVDSVYSNILQMSDSLDLIQKNIISRSPIMIDQIASFIIQEIIENHLRPFLCGEILPRPKTPLDEVSYMVKQVLSEVVESHKLQKPSPLDIYPDKFVGEIVTRVLSKIFSPKPNTNAELENMTQKIVNSVNNRLNRAKIPILCDKQSSFPFGDADIVDELVTSVYRNVLKQHGLDPDIEESENSDAFVENIAKLIIAAISDYLLHPLFSGDLSAASCSNSMADNIVFNVLDDVNNSSKPNQYLPPYNTLLPYTFLEDMIRVLLSKFFPLPKVASNTALKDKGVNFNEIASNLISDIRRKISQHEIRFSKDEDKAKSCYSEDDVRHLVDSVFTNILENSDSQESVEENITKSNDVLIDKIAGFIIKYVCEHHLQPFVEKRQLASSTCECFDDTQNFIYASAYSSTFLEDVVSGVVSKIFHRVVGIVQVESTRNSEDVLFDKAESLIYWITEEFSKAQVTTIENAEERLCFPPVEKDVLKNMIGTVYGKVLEEYEMEMMPDKDFLDDTKALAGQITKIILTEIFDFQIPPDLIENLPLSLHSKLSQNALVNRVHYDISKSRFRRQASTIYTTMLSHIHLEKIVTQLISQISPSHSSGEHSDTSQSDLSNTVMKLINEIMSIISKHAICIVKHGNEKQSMISEKDMQSMVDSIYADLSHSNLYQSLTKDKKGVSSIPVSKIASFIIKEIFNHHLESFLSGDKSFLSASVAQPCKKKATNPKQRELSASFVQPCKKKATNPKQRELSFIMNSAVFLEEVISDLLCRILQTFLQNSLADETPEKAIAKIMDIVTALVKSIVLEFTTSEILLAENLDESLWFSETYKEMVQKTVNSVYENILDQYKSLMQLHRAVQNDTTCFGGKIYHFLLEEIYDYQVQSLVSGELMPSSYSFPRAENIIKNVLNVILKDTNALPSCITVLPCSLIENMIYKLLVNIFPTDDTTSKLKEKEVGPDDDDEFMAAASKLTDEIIKEISEHEIRFAAEEENVESVQQGTTENFIDSVCNNILKNSEFQAEVQKDAHKKGSSFLSKMAGFIMKEIMNHHLRPFLYGEDSPSGNLPDYGRASVLAKSGKEKSQPSLFSAAFLEDVIVDLAHKFSSFATLTEDSRKKDMPEPEVESLALNFANSLVQEFRKSEIKVLPHAEEIFSFPPIGKETVNEISNSVYDQFIGKFGSDSIQKDNTGNIVIEMVSSLAQKAISSFKIQPLFSGDWCSTFFSFLDPENITQRVQLLPQKTSMQISRCLKQSQLALSKDTSMKKDDVQCPILNSIATLMKSNIINLMSGSTTGITDTKKDDENKLKSAPQKYENASKVMSPTISVKSKGTQVQHLSDKCKSNETEKENLVLINEQGQMIEIYTHFAVATVENSSEKEELVSDLVIDNESKMDNASKSIVKTDEKPKSKRKESIKEKTVKIAQQPVTEERTQSVSETDRYEEPYSETERVENVIENIYDNILISSQEQLDFFKPTYSKGVPSDKPLVIGQDSAQPVPTKGLSPSVNTDTTAKEKVIEETETKRKEKSEIKKEKDIKSLPSKPDHPQSSSESKPTIIPAMFLEDVLTELVNKLIFTPSPEPKKYDSTPKASEDQNQDELYDTAMKLIDSMLKQFSDAEVKVFRPEKGNEIFTKATKESEVHPVHTVPPVLKEAVTGEPASSMTIENVDKLPPTQKATEQPSFHKIPSLHRMPSIEKSVVNKIVHSCVCNVLKECTSQESVCKNINSNGENLAKRLTSTVISEIFQHQLNLMFSDEIPASACVPLESKDVEKKVQKAVETASKECQTSSPYTIKLPFKFLDDVISALLAKVFSKLSNVKTKISQQTPLTQLDFLQMKLVNTVAAEIAKNEDMIIQYVESLHPNDDEIIQLVVQTIYNNLLPQFGTQETIQNCIASGCRLLSKTIVDLVLREVAGNQLQNYFGGELTPYQCAEVDNVVENILTNVALTTSPQPPHPRKLSYHVIEAISVKFLSKLLSVFPTVHTVKTKSPETEMQKISSKILKSIQECMSKSKIKVVKPAKELEPEPLADDATIEKVANSVYANLLKHSGSPASVFEDLMGKNNVLPDIIGSLMVKEISNSEFQAQAEEELSSSEIALEAVKIMEKVVKIIDELKSKEKSSSIKDLILDSRVLEEALALFLAKLVKKPGPESKDTDNLTKPELNKIASQLTKSVTAEISRSNISLVDSDPEEQPLDPENIEKISQVIDSVYSNIIKQSGDDNELYDMKGTKKLFPKKVASLIVNGVSNVPSCRVITKSSDAGVFGDLDTNRIIEKAQKHAARMNSDSDKELDDVVEDELPVRIIPHIGNKPLKIDPNIIAEHLAVISMKTQPLETLKMDCLKRTGYSIAELRRASISGKGHSSTEVCEMGTRQKERRISLDRTGRLDVKPLEAVGRNSFQNVRRPDITRVELLKDIHNKKDLIVRLVAHDISKNDLEGSFREDMVSDEEEIVLGEVAGHQCLGEISGDHVGEVLKPSETQVVSPKTTTSTSSLRKFLALSKCCHPTSGEHIESIEATGNQTMEPSKTHVKRAVAELDMPSSKILAEGPSSSDKLQYKKEENLAIEPTHYLIHRIMSTSSYNQEDLISGEAEEFKPDLKAKALEGCSQEPQAGNSSSVQFVTIFEGSKHTTSSAGVSKEHISEICKNTISKQGSKVLAKVSSTLSKVFSRSSSSMPKSSSPPHQDKH", "length": 6892, "header": "tr|A0A9J7H1M0-1|A0A9J7H1M0_CRIGR Isoform 1 of Fibrous sheath-interacting protein 2 OS=Cricetulus griseus OX=10029 GN=Fsip2 PE=4 SV=1 CANONICAL=A0A9J7H1M0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H1M0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1M0/entry#A0A9J7H1M0-1", "sequence": { "sequence": "MELYLSACSKTANVAAKKAASSSVAEESQQCGDRAHKTPIPGVGAAQLLDLPLGVKLPMIPGTDTVYFTTNISEKLFRPSYGFNLNDPYCRLLETQYKSLHDPHLRTYYKRKDILRRLKKGGYITSNNKIVCSLRELNKYRQYLTSLKLDFERNYLREQQLITKQLHKLQETSQLPNCSDVTRFQQWLLQDTSQSVKDQERLLRHRYLDMISKELEQLERTAEEQRLLRMDREERRQREYARKKLSLRRKIEEEWKTKEMLLLTKIGEDVKREQRVEEQRRRSREESDRKKQAMLEKKMAYHLQKMQDAGIKDDTGRNAFEYKGENEAPYESPMKKKKKQFDDIKIVYPDGEEKIFKGTSGHVSTAVNQSQSNSKNVTKISVSSVAYQPDIQNSSSEQKRNGVTKKISDEKGTVNTSARNSIISTQNSPTRNARLSHASLGPQKDEKEIQGDWNGRPNKKPSYAGEPGYQGGAPPPGIFSSPVYSNMQQNLQNCLQDKITSEELNSIIQNIMTWVVATVTSILYPAITKYEERVQSNTYPVSDDSDLSSDSSSFCSTCSEGFTYRSYTPKTYQADPCIFAGETPVKKPPTPLKPPSAHVERTVIEKTYHMSEESISSQVNYNETSLEYPFPKIGSSKSDSHLMTSLETSTKISKDATTETDTLEIPLVFDQRAKALDQMKNLKNVFVNFKCHLKGETQLILESIFQEIMSDLSQAIPSLSSVTAEVFVDQCDTEREEMLSNVDICSVASEIVENMLEKLESAVEKQCVQMFSQEDLAVELKPSLSTSGDYLSSLDTKPSEDTLSYTLEPMCDIADDMVHAILEKLMTLASYKKSELPPEDTTNHFQQQINAEPTHKLQKKPDQKRSSPESDAANLIMKEEMQNLISSIFSQSSLVGHVEEAISTILGYVQTELNNERLIASEETVVLLQLLDDVLTQLHPEPAKASVKKHRQPRVRNLPDTEEKYRVTGSRSFNGPRTKRPFPPVNVPGMVLYSEDDDEEIDNLVKSVLDSSFSGEKTKPQEQITNHSATKRDTCFERKRSNKQPTETSQSKAGHHDWGLGLKLSLSGEDIVKTKHCLTNDASIFSQDQKHEIQKASENIVKHILTEMFKDMSSDSSHYSGNKIGEETSDFILEKSQGLQNQEWMEQMFSRSEICAFAHEITDSVINILHKASKYIPHTIKNAISSVHQSCLEHSDTPQTAKEIPTKTPFKVWFDSEKKMKYLSSLNVELEKTSQLRSGECEPKRVNDITDKIINTIFKSLTLFVCPKLQRGNKPSQIEKSLHSQLSTYTMKIVNIVLHAIQNELGLNNINPNTRDTDHIKCHASKGLFADPNEAVDSHICSVDEFMESPLLTCICEMISCTNEDQTNTSTSTDKTLSTLCGSDNVNKQNILSSKQDKTSFRKFMATPCIRHSTLNRKDLKDSPKLKVLDQIGETLHEMLSKLPEAHHDSQPSSSQQNTEKSHKDPLALSNVQLISKTILDYVLAKLCDIDQDKSIVNSELKTASESLDIDNLSFASIMEEMAKCTYMISNTISKMVMGKKEIPKNEAKNDLPVSSKTENSEEMCPDKLKAVASDILNVVFAKLELFAGGNEENVSVLNDENKKETMMDCECESRNSTDSHDKSLQSTLYNHAKKVSSAILKAIQTELNIDPSDCKENIKSSTQETQIFTKIVDLILDVVSSDMFTEPESENRGTENYGYRPIYGNFLPGGAEPESFLDSDDKQNKEFIGDRTSPREETSTFSTDQWILERTLNKIEVKLKEPHKSPIVPIIRNILNEIFQSALINQLNVVSLSHSHFTGRPHNIPVSTIQTSAQFRDPLMGPLVSDTDVTVVVNDVVRTVFHKLFSAAMTEKPVSENRCETIIFSTNVSFREHTYTGNRPVTMLSGNPCDIQSSWNVDKQTKINVVEDIVQAILQNLENFAASKVESLFHPQINFRVPVTLPVQQQEGSLSTALSGNDSYSDKQFPCSSVEHGTPGKMDSWCQLSLSRLNIYAKEVARKILQGIKYELDKEQESPLLTNNVVVSENIASQIVNTVLDIVSCKSKCDKNSSDQDNYSDQQDGIIERLVNKADYRKILEFQIQDTIEGILCDIYENIIHQNNLSFATPTLQYSIPGTHSEVNIQPVVRGTNIIPKVSVPKTDVILVSKDIVNIVLRSLTSLVMLAINAKDPASTRLAFCDMFPKSQCQQSLFITQRTEEKPGHFSHSEDKSLAYADVYQMPMKRKEDTRELTQDPCEENANFITETIFNRLQSFATERINSLISPALQSNKENVFISPKFENGKHDDSIFHEPGQVESGVNVLRLPTTEADPSHELVEPVFSSCGESLETTIHLSQTTLKDYADFIASAILKLIKNDLDLETQSMHTYSNSILFQKNIIVSEIVTSILRILHNKGSVKEFFLPSPENPSCSQLTIPNEVLLGFKEKENTGTLSNPPLEESQMILEKESQRVMLEEIFMRKGESKPKENSKVFSAVEEVLKKLSQNIMEIIGHLPPFNEIPYVVSKSKSKMSVITQKKLFQSHINNVSNDILENILGEMHSVIVTSLYKKTKSRREVEMHDNNDTSAKPPCFKETKLTRKISNTPRFGGPEMHPYADNLNALVLENMFFPYSPLQIGRYLVQIVLDKLSSFVSLHLEERFPFEGSYDDMYLLRLHNSKLSPKNSPRPGCKTSLKARSKVTSLSKFKTKPHLGISGTKSKSKTKLGAVEKTPRENRSQTAIGLPQTPSTEDAKVVLKTKLPTSELRVYAKNIITDILEIIMKELEKVVQNRTVLNTKTLPSGQILEASKIVNAVLQELYATNNHNMASPINVSNLGDHRLSKQNLGAGSPTEQQACFYLENVSSQLEQIFPKEGIFKKMFDKWQTETSDTENEKSKLLTIAENILTEISIKAKDLEYSLSLLNLPPLEDCENRFYDRFKCGATRAEDTKAQINMFGREIVEMLFEKLQLCFLSQMPTQDSKGILTSRKEHVAAKSKHGVPNKHILSGVQTCNKKMKDQVSISPSNQIVQEIVERVLNMLESFVDLKFKHISKYEFSEIVKMPIDNLFQVQQRQLSKKMLPKLQPFRKFGEEPKSSTIISKENVHNTLLQVHSFHSELLTYSVTTVSDMLSIIKNKLDKEISQMEPFPVSTLKENIAASEIIGTLIDQCTNFNESLITNLHNKNWFEGTENVYIVNQVEFASHMKMPASKMRNTSMRSNSPQRSVSGLGLNSEDDTKQKYEITSSSSSHVSSCVENKIKSSDPTGSYNSNAVPLCSRNKAQDQSQTNPNFGLFEGSTSSNNSLPEGSVLQKLFKKANDSTEESLKQAMSFIEMGKGENPRVFHYETTKPTEPNEIKTTASPLKICLAADNIVNTVLSSYGFPQQPHPDESLETVKPFLMSSQNSLSSVCEGQKNENNLLKMWYKRMDCMNEEESEGLEACQGDFSLLHKWENKNSKLTSETLEETDKITFVDHELGPNEMHLVARHVTTSVITYLKHFKDAVSTDGKLSHVSSLPKKNYDSNQPLKRIYSNSSIYQFCEHLSESVICYLISNFSDDTEEGNRDNAWKIQDVISNKNISIHSQVYQSRSISIGELALSIFEVIIEILSNGNIISADMAHQASIKTKYRFCPRVTSSDIDDIFQDLLKGVIFVLSKVLGINHHFENNVRNKTYPIFRNSMPIFNKINTMETQTGPRDWESSPHLIDHHAQRNKLNYLACRLNSLVGNLKSHESKEVVNEVFNIVLDLFLPDEFPDGDMSSGKLARTFLTSNNQQSNRILTNNLGLSPKSIFLLNIVCEKLIRTLLEKCTGATFLEDSSIFREVAEECQHGKLLGSVQGRDFDYLEAPMDCEQFQGDYMADLLENLADVDQDLLSSDCVLNVISHSLVKSLMDKLSHGFQQAPFENKCMSYATREIQPFFPKAKRQELIELGEKNAHVSFMSYDSNFLNRSLNNPNAAGFKMQTPFGKQRAVKPFSLSLPDREETRGMNTIAFRKLCQRGANGGVYSATFLEDIISQLFFKLTTSLWRKNISITETWLNEINTSLINNVVNELNNAQITVLRYPEERLYFPSAHKGCVTKIVDSIYYDVLQQYEFKVTCGDNLPYDDTSVAEQMSNSIFLEIVDYQLPSCFKGKLKSNLYHTLNAEIILHKLQNNLRKFISEPMSSKDYSTMLPHSFLEYVIRRLLAQLIPLPVKPSSLEKQCLMCSNFNEMTNSITNKVMSAISKHKIWFTIYDNQCLHTDKNLQKMVDSVYSNILQMSDSLDLIQKNIISRSPIMIDQIASFIIQEIIENHLRPFLCGEILPRPKTPLDEVSYMVKQVLSEVVESHKLQKPSPLDIYPDKFVGEIVTRVLSKIFSPKPNTNAELENMTQKIVNSVNNRLNRAKIPILCDKQSSFPFGDADIVDELVTSVYRNVLKQHGLDPDIEESENSDAFVENIAKLIIAAISDYLLHPLFSGDLSAASCSNSMADNIVFNVLDDVNNSSKPNQYLPPYNTLLPYTFLEDMIRVLLSKFFPLPKVASNTALKDKGVNFNEIASNLISDIRRKISQHEIRFSKDEDKAKSCYSEDDVRHLVDSVFTNILENSDSQESVEENITKSNDVLIDKIAGFIIKYVCEHHLQPFVEKRQLASSTCECFDDTQNFIYASAYSSTFLEDVVSGVVSKIFHRVVGIVQVESTRNSEDVLFDKAESLIYWITEEFSKAQVTTIENAEERLCFPPVEKDVLKNMIGTVYGKVLEEYEMEMMPDKDFLDDTKALAGQITKIILTEIFDFQIPPDLIENLPLSLHSKLSQNALVNRVHYDISKSRFRRQASTIYTTMLSHIHLEKIVTQLISQISPSHSSGEHSDTSQSDLSNTVMKLINEIMSIISKHAICIVKHGNEKQSMISEKDMQSMVDSIYADLSHSNLYQSLTKDKKGVSSIPVSKIASFIIKEIFNHHLESFLSGDKSFLSASVAQPCKKKATNPKQRELSASFVQPCKKKATNPKQRELSFIMNSAVFLEEVISDLLCRILQTFLQNSLADETPEKAIAKIMDIVTALVKSIVLEFTTSEILLAENLDESLWFSETYKEMVQKTVNSVYENILDQYKSLMQLHRAVQNDTTCFGGKIYHFLLEEIYDYQVQSLVSGELMPSSYSFPRAENIIKNVLNVILKDTNALPSCITVLPCSLIENMIYKLLVNIFPTDDTTSKLKEKEVGPDDDDEFMAAASKLTDEIIKEISEHEIRFAAEEENVESVQQGTTENFIDSVCNNILKNSEFQAEVQKDAHKKGSSFLSKMAGFIMKEIMNHHLRPFLYGEDSPSGNLPDYGRASVLAKSGKEKSQPSLFSAAFLEDVIVDLAHKFSSFATLTEDSRKKDMPEPEVESLALNFANSLVQEFRKSEIKVLPHAEEIFSFPPIGKETVNEISNSVYDQFIGKFGSDSIQKDNTGNIVIEMVSSLAQKAISSFKIQPLFSGDWCSTFFSFLDPENITQRVQLLPQKTSMQISRCLKQSQLALSKDTSMKKDDVQCPILNSIATLMKSNIINLMSGSTTGITDTKKDDENKLKSAPQKYENASKVMSPTISVKSKGTQVQHLSDKCKSNETEKENLVLINEQGQMIEIYTHFAVATVENSSEKEELVSDLVIDNESKMDNASKSIVKTDEKPKSKRKESIKEKTVKIAQQPVTEERTQSVSETDRYEEPYSETERVENVIENIYDNILISSQEQLDFFKPTYSKGVPSDKPLVIGQDSAQPVPTKGLSPSVNTDTTAKEKVIEETETKRKEKSEIKKEKDIKSLPSKPDHPQSSSESKPTIIPAMFLEDVLTELVNKLIFTPSPEPKKYDSTPKASEDQNQDELYDTAMKLIDSMLKQFSDAEVKVFRPEKGNEIFTKATKESEVHPVHTVPPVLKEAVTGEPASSMTIENVDKLPPTQKATEQPSFHKIPSLHRMPSIEKSVVNKIVHSCVCNVLKECTSQESVCKNINSNGENLAKRLTSTVISEIFQHQLNLMFSDEIPASACVPLESKDVEKKVQKAVETASKECQTSSPYTIKLPFKFLDDVISALLAKVFSKLSNVKTKISQQTPLTQLDFLQMKLVNTVAAEIAKNEDMIIQYVESLHPNDDEIIQLVVQTIYNNLLPQFGTQETIQNCIASGCRLLSKTIVDLVLREVAGNQLQNYFGGELTPYQCAEVDNVVENILTNVALTTSPQPPHPRKLSYHVIEAISVKFLSKLLSVFPTVHTVKTKSPETEMQKISSKILKSIQECMSKSKIKVVKPAKELEPEPLADDATIEKVANSVYANLLKHSGSPASVFEDLMGKNNVLPDIIGSLMVKEISNSEFQAQAEEELSSSEIALEAVKIMEKVVKIIDELKSKEKSSSIKDLILDSRVLEEALALFLAKLVKKPGPESKDTDNLTKPELNKIASQLTKSVTAEISRSNISLVDSDPEEQPLDPENIEKISQVIDSVYSNIIKQSGDDNELYDMKGTKKLFPKKVASLIVNGVSNVPSCRVITKSSDAGVFGDLDTNRIIEKAQKHAARMNSDSDKELDDVVEDELPVRIIPHIGNKPLKIDPNIIAEHLAVISMKTQPLETLKMDCLKRTGYSIAELRRASISGKGHSSTEVCEMGTRQKERRISLDRTGRLDVKPLEAVGRNSFQNVRRPDITRVELLKDIHNKKDLIVRLVAHDISKNDLEGSFREDMVSDEEEIVLGEVAGHQCLGEISGDHVGEVLKPSETQVVSPKTTTSTSSLRKFLALSKCCHPTSGEHIESIEATGNQTMEPSKTHVKRAVAELDMPSSKILAEGPSSSDKLQYKKEENLAIEPTHYLIHRIMSTSSYNQEDLISGEAEEFKPDLKAKALEGCSQEPQAGNSSSVQFVTIFEGSKHTTSSAGVSKEHISEICKNTISKQGSKVLAKVSSTLSKVFSRSSSSMPKSSSPPHQDKH", "length": 6892, "header": "tr|A0A9J7H1M0-1|A0A9J7H1M0_CRIGR Isoform 1 of Fibrous sheath-interacting protein 2 OS=Cricetulus griseus OX=10029 GN=Fsip2 PE=4 SV=1 CANONICAL=A0A9J7H1M0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H1M0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1M0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H1M0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1M0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100754113", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754113", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H1M0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1M0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1026, "end_pos": 1028, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1368, "end_pos": 1370, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1512, "end_pos": 1514, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1594, "end_pos": 1596, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1616, "end_pos": 1618, "annotation": "n_glycosylation_sequon" }, { "start_pos": 177, "end_pos": 179, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1868, "end_pos": 1870, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1958, "end_pos": 1960, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2049, "end_pos": 2051, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2055, "end_pos": 2057, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2101, "end_pos": 2103, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2524, "end_pos": 2526, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2561, "end_pos": 2563, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2712, "end_pos": 2714, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2767, "end_pos": 2769, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2808, "end_pos": 2810, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2838, "end_pos": 2840, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3149, "end_pos": 3151, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3189, "end_pos": 3191, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3276, "end_pos": 3278, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3293, "end_pos": 3295, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3507, "end_pos": 3509, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3528, "end_pos": 3530, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3552, "end_pos": 3554, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3644, "end_pos": 3646, "annotation": "n_glycosylation_sequon" }, { "start_pos": 368, "end_pos": 370, "annotation": "n_glycosylation_sequon" }, { "start_pos": 376, "end_pos": 378, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3922, "end_pos": 3924, "annotation": "n_glycosylation_sequon" }, { "start_pos": 393, "end_pos": 395, "annotation": "n_glycosylation_sequon" }, { "start_pos": 4003, "end_pos": 4005, "annotation": "n_glycosylation_sequon" }, { "start_pos": 4015, "end_pos": 4017, "annotation": "n_glycosylation_sequon" }, { "start_pos": 415, "end_pos": 417, "annotation": "n_glycosylation_sequon" }, { "start_pos": 4341, "end_pos": 4343, "annotation": "n_glycosylation_sequon" }, { "start_pos": 4454, "end_pos": 4456, "annotation": "n_glycosylation_sequon" }, { "start_pos": 4455, "end_pos": 4457, "annotation": "n_glycosylation_sequon" }, { "start_pos": 4567, "end_pos": 4569, "annotation": "n_glycosylation_sequon" }, { "start_pos": 5071, "end_pos": 5073, "annotation": "n_glycosylation_sequon" }, { "start_pos": 5439, "end_pos": 5441, "annotation": "n_glycosylation_sequon" }, { "start_pos": 5524, "end_pos": 5526, "annotation": "n_glycosylation_sequon" }, { 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"id": "A0A9J7H1M0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1M0" }, { "id": "PF15783", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15783" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Fibrous sheath-interacting protein 2 C-terminal", "eco_id": "ECO_0000259", "start_pos": 4043, "end_pos": 4600, "start_aa": "Phe", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1026, "end_pos": 1028 }, { "start_pos": 1368, "end_pos": 1370 }, { "start_pos": 1512, "end_pos": 1514 }, { "start_pos": 1594, "end_pos": 1596 }, { "start_pos": 1616, "end_pos": 1618 }, { "start_pos": 177, "end_pos": 179 }, { "start_pos": 1868, "end_pos": 1870 }, { "start_pos": 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Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 39% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035302987", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302987" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H1P3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1P3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC118239114", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1P3", "locus": {} } ], "crossref": [ { "id": "A0A9J7H1P3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H1P3", "database": "AlphaFoldDB", "categories": [] }, { "id": "118239114", "url": "https://www.ncbi.nlm.nih.gov/gene/118239114", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:118239114", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118239114", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H1P3", "url": "https://www.orthodb.org/?gene=A0A9J7H1P3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "XP_035302987", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302987", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H1P3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1P3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H1P3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1P3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQRLWTPGSSGQVHPSISTGLHLAKRLVEKGTSREEASLDVTRSPTHGEGSPDPDPLSFRTRRGPGAHVLALCRFRKHCPCQKPEQGGSQDRQPTLGSLGSPLATPGAAGRGRRARSTAHAPAGRAGGRPRSPAPSRSPWQRARGGRGRAAAAAISAASCSSRPRRHGNRVTQLGRLPARLARVTPAARAPSSPSRTLPGARGRQGGRLMGDAY", "length": 214, "header": "tr|A0A9J7H1P3-1|A0A9J7H1P3_CRIGR Isoform 1 of Uncharacterized protein LOC118239114 OS=Cricetulus griseus OX=10029 GN=LOC118239114 PE=4 SV=1 CANONICAL=A0A9J7H1P3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H1P3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1P3/entry#A0A9J7H1P3-1", "sequence": { "sequence": "MQRLWTPGSSGQVHPSISTGLHLAKRLVEKGTSREEASLDVTRSPTHGEGSPDPDPLSFRTRRGPGAHVLALCRFRKHCPCQKPEQGGSQDRQPTLGSLGSPLATPGAAGRGRRARSTAHAPAGRAGGRPRSPAPSRSPWQRARGGRGRAAAAAISAASCSSRPRRHGNRVTQLGRLPARLARVTPAARAPSSPSRTLPGARGRQGGRLMGDAY", "length": 214, "header": "tr|A0A9J7H1P3-1|A0A9J7H1P3_CRIGR Isoform 1 of Uncharacterized protein LOC118239114 OS=Cricetulus griseus OX=10029 GN=LOC118239114 PE=4 SV=1 CANONICAL=A0A9J7H1P3-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 105, "start_aa": "Thr", "end_pos": 105, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr105", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 185, "start_aa": "Thr", "end_pos": 185, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr185", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H1P3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1P3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H1P3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1P3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:118239114", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118239114", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 105, 185 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { 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"o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7H1P5-1", "uniprot_ac": "A0A9J7H1P5", "uniprot_id": "A0A9J7H1P5_CRIGR", "mass": { "chemical_mass": 45323.0, "monoisotopic_mass": 45323.0 }, "refseq": { "ac": "XP_007653105", "name": "ribosomal protein S6 kinase-related protein isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007653105" }, "gene_names": [ { "name": "Rskr", "type": "recommended", "evidence": [ { "id": "A0A9J7H1P5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1P5" } ] }, { "name": "Rskr", "type": "synonym", "evidence": [ { "id": "XP_007653105", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007653105" } ] } ], "protein_names": [ { "name": "Ribosomal protein S6 kinase-related protein isoform X3", "type": "synonym", "evidence": [ { "id": "A0A9J7H1P5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1P5/entry#names_and_taxonomy" } ] }, { "name": "ribosomal protein S6 kinase-related protein isoform X3", "type": "synonym", "evidence": [ { "id": "XP_007653105", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007653105" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003617063.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007653105", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007653105" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H1P5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1P5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Rskr", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1P5", "locus": {} } ], "crossref": [ { "id": "A0A9J7H1P5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H1P5", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd05123", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05123", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100760452", "url": "https://www.ncbi.nlm.nih.gov/gene/100760452", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000719", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000719", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008271", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008271", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011009", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011009", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045270", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045270", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100760452", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760452", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H1P5", "url": "https://www.orthodb.org/?gene=A0A9J7H1P5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24355", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24355", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24355:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24355:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00069", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00069", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007653105", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007653105", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H1P5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1P5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H1P5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1P5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H2F3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2F3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H2F3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2F3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K9Q1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9Q1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K9Q1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9Q1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGAVSCRQGQHTRVSAPQKGGNIQGPWAKGWKSFWCGMGTIRSGLEELWVLQRHQEPLQPVPLPLEKPLSEWPVPQFISLFLPEFPMRPVRGQQELKILGLVAKGSFGTVLKVLDCAQKAVFAVKVMPKIKVLQRDTLRQCKEEVSIQRQMNHPFVHSLGDSWQGRRHLFIMCNYCCMDLYSLWSAVGGFPEASIRLFAAELVLVLCYLHDLGIIHRDVKMENILLDERGHLKLTDFGLSRRLSQGARAYTICGTLQYMAPEVLSGGPYNHTADWWSLGVLLFSLTTGKFPVAAERDHVTMLASVTHCKSEMPASITQELSLLLHELLCQNPLHRLRYLHHFQVHPFFRGVPFDPELLKKQPVNLVMDTQYTSGLESVPFKDFDCDLESWVHSISADSLL", "length": 400, "header": "tr|A0A9J7H1P5-1|A0A9J7H1P5_CRIGR Isoform 1 of Ribosomal protein S6 kinase-related protein isoform X3 OS=Cricetulus griseus OX=10029 GN=Rskr PE=4 SV=1 CANONICAL=A0A9J7H1P5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H1P5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1P5/entry#A0A9J7H1P5-1", "sequence": { "sequence": "MGAVSCRQGQHTRVSAPQKGGNIQGPWAKGWKSFWCGMGTIRSGLEELWVLQRHQEPLQPVPLPLEKPLSEWPVPQFISLFLPEFPMRPVRGQQELKILGLVAKGSFGTVLKVLDCAQKAVFAVKVMPKIKVLQRDTLRQCKEEVSIQRQMNHPFVHSLGDSWQGRRHLFIMCNYCCMDLYSLWSAVGGFPEASIRLFAAELVLVLCYLHDLGIIHRDVKMENILLDERGHLKLTDFGLSRRLSQGARAYTICGTLQYMAPEVLSGGPYNHTADWWSLGVLLFSLTTGKFPVAAERDHVTMLASVTHCKSEMPASITQELSLLLHELLCQNPLHRLRYLHHFQVHPFFRGVPFDPELLKKQPVNLVMDTQYTSGLESVPFKDFDCDLESWVHSISADSLL", "length": 400, "header": "tr|A0A9J7H1P5-1|A0A9J7H1P5_CRIGR Isoform 1 of Ribosomal protein S6 kinase-related protein isoform X3 OS=Cricetulus griseus OX=10029 GN=Rskr PE=4 SV=1 CANONICAL=A0A9J7H1P5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H2F3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1P5/entry#A0A9J7H2F3-1", "sequence": { "sequence": "MGTIRSGLEELWVLQRHQEPLQPVPLPLEKPLSEWPVPQFISLFLPEFPMRPVRGQQELKILGLVAKGSFGTVLKVLDCAQKAVFAVKVMPKIKVLQRDTLRQCKEEVSIQRQMNHPFVHSLGDSWQGRRHLFISYLHDLGIIHRDVKMENILLDERGHLKLTDFGLSRRLSQGARAYTICGTLQYMAPEVLSGGPYNHTADWWSLGVLLFSLTTGKFPVAAERDHVTMLASVTHCKSEMPASITQELSLLLHELLCQNPLHRLRYLHHFQVHPFFRGVPFDPELLKKQPVNLVMDTQYTSGLESVPFKDFDCDLESWVHSISADSLL", "length": 328, "header": "tr|A0A9J7H2F3-1|A0A9J7H2F3_CRIGR Computationally mapped isoform of Ribosomal protein S6 kinase-related protein isoform X2 OS=Cricetulus griseus OX=10029 GN=Rskr PE=4 SV=1 CANONICAL=A0A9J7H1P5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K9Q1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1P5/entry#A0A9J7K9Q1-1", "sequence": { "sequence": "MGTIRSGLEELWVLQRHQEPLQPVPLPLEKPLSEWPVPQFISLFLPEFPMRPVRGQQELKILGLVAKGSFGTVLKVLDCAQKAVFAVKVMPKIKVLQRDTLRQCKEEVSIQRQMNHPFVHSLGDSWQGRRHLFINFWCFAVCNYCCMDLYSLWSAVGGFPEASIRLFAAELVLVLCYLHDLGIIHRDVKMENILLDERGHLKLTDFGLSRRLSQGARAYTICGTLQYMAPEVLSGGPYNHTADWWSLGVLLFSLTTGKFPVAAERDHVTMLASVTHCKSEMPASITQELSLLLHELLCQNPLHRLRYLHHFQVHPFFRGVPFDPELLKKQPVNLVMDTQYTSGLESVPFKDFDCDLESWVHSISADSLL", "length": 369, "header": "tr|A0A9J7K9Q1-1|A0A9J7H1P5_CRIGR Computationally mapped isoform of Ribosomal protein S6 kinase-related protein isoform X3 OS=Cricetulus griseus OX=10029 GN=Rskr PE=4 SV=1 CANONICAL=A0A9J7H1P5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 9% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035304032", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304032" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H1X9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1X9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC118239197", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1X9", "locus": {} } ], "crossref": [ { "id": "A0A9J7H1X9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H1X9", "database": "AlphaFoldDB", "categories": [] }, { "id": "118239197", "url": "https://www.ncbi.nlm.nih.gov/gene/118239197", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:118239197", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118239197", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_035304032", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304032", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H1X9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1X9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H1X9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1X9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTGKRAPRPLPLAWPPPRRPRGPLPGARGRGRPGPRALGKDPKPHAGPKCKALTRSREERGRPFPPAPGGPAALACAPAWPPTPLPVTAPGPCTSEGGCGHWKARPVGGQVRRLGRPRSRSRTQVAGAGWDSTNRSSPPSSSHPEDLPQTLLRFFIDPPQSNFCLEYPWIIGNWRWGGPSSLSSGALRLAAPPPPYSRLGLPTPHSPSQEQAPLGESPRAECACLFKRPRGAPRGPPGAGGGGHRRGRLAPGGRGSTTKLRPLSLRIGRDRQTGGGRALSSPSLSQAVLGGGVGRALVPGPFRVVRTLSFPQQPNQAPAAWPG", "length": 323, "header": "tr|A0A9J7H1X9-1|A0A9J7H1X9_CRIGR Isoform 1 of Translation initiation factor IF-2-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC118239197 PE=4 SV=1 CANONICAL=A0A9J7H1X9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H1X9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1X9/entry#A0A9J7H1X9-1", "sequence": { "sequence": "MTGKRAPRPLPLAWPPPRRPRGPLPGARGRGRPGPRALGKDPKPHAGPKCKALTRSREERGRPFPPAPGGPAALACAPAWPPTPLPVTAPGPCTSEGGCGHWKARPVGGQVRRLGRPRSRSRTQVAGAGWDSTNRSSPPSSSHPEDLPQTLLRFFIDPPQSNFCLEYPWIIGNWRWGGPSSLSSGALRLAAPPPPYSRLGLPTPHSPSQEQAPLGESPRAECACLFKRPRGAPRGPPGAGGGGHRRGRLAPGGRGSTTKLRPLSLRIGRDRQTGGGRALSSPSLSQAVLGGGVGRALVPGPFRVVRTLSFPQQPNQAPAAWPG", "length": 323, "header": "tr|A0A9J7H1X9-1|A0A9J7H1X9_CRIGR Isoform 1 of Translation initiation factor IF-2-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC118239197 PE=4 SV=1 CANONICAL=A0A9J7H1X9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H1X9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1X9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H1X9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1X9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:118239197", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118239197", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 134, "end_pos": 136, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 134, "end_pos": 136 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7H1Z0-1", "uniprot_ac": "A0A9J7H1Z0", "uniprot_id": "A0A9J7H1Z0_CRIGR", "mass": { "chemical_mass": 390492.0, "monoisotopic_mass": 390492.0 }, "refseq": { "ac": "XP_035304048", "name": "uncharacterized protein LOC107977695 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304048" }, "gene_names": [ { "name": "LOC107977695", "type": "recommended", "evidence": [ { "id": "A0A9J7H1Z0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1Z0" } ] }, { "name": "LOC107977695", "type": "synonym", "evidence": [ { "id": "XP_035304048", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304048" } ] } ], "protein_names": [ { "name": "Uncharacterized protein LOC107977695 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7H1Z0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1Z0/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein LOC107977695 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035304048", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304048" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 10% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035304048", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304048" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H1Z0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1Z0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC107977695", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1Z0", "locus": {} } ], "crossref": [ { "id": "107977695", "url": "https://www.ncbi.nlm.nih.gov/gene/107977695", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003591", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003591", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015753", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015753", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029423", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029423", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032754", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032754", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:107977695", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:107977695", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H1Z0", "url": "https://www.orthodb.org/?gene=A0A9J7H1Z0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23045", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23045", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23045:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23045:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13855", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13855", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14914", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14914", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF15779", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15779", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035304048", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304048", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H1Z0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1Z0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H1Z0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1Z0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSLLHFGARRLVFTWQLLWLLALAVPIPEFTGNPVQLTSEPWVPTKLWSWHPSDHPPKSPHTPAPRTDTAGTEYLGSSTSTEMLAPLEELTDSLLPFQDLSTSRGPNSEPGKLAVSHQDLTNKMIPAEKQPGNILMLNGDQIQAPILPSRFKSTVSLAEAADNQLYEMLVPPLNSQSSKATKFIVSPQELKKDLARHRKLAKVVVGNPQLQNQIKDDYYEDLNMNEAYSYNLPPQPQGNSGEAPELLGQVEPDQSETLIENPQNSQEPDQLETQVENPQNLQEAQDYYPQPSEENEPLIQKEDSAHHQHYYTLPTITGKPADTEFKITSQSRMEIESSPYEEETPAQTPSPLVGAEPFPSQQQQPAEPPEYPEEIESSGTDLGSPLQPQEEAEDVGPTGPILEDESSPSELEQPVQLTESPDEVGSGSKNQPEASVEPSEVLPIEQEAPLQAAESAIENIVETPQVTAQPTQNEEHHYHLPYVTVRPVGSNTTSELTKEMEPSLAQQEFPVHPLESTDEMEPVLNEEEPPAQASEPPGESQFQSQLEVPTQALEYAEEFKPSSTEQEQAVQFSEPHEATVLPPGQQSSLSYVTGQPPDTEITVTEKPLAEMGTSPVYHEPTASSEEVELSNQQGVLSQSPEPILYNKPLSQQEDTAGVLQIPEEGEPLPAQEETPEQILELPNEEVSQPPGHDGVTVPSLSHGQVHPPVSHYAHTMHPTIPKEETLLEEPSASQQGSSPWPSMTNKFSLADLEEILRTAHPKSHKTTVKHVDLELTITPEISLEDGSVLFPEEDLLRPIDSTEQGNFSQIQTNALSQPPYFSETESPAFQEAIDHTTHHSKKVHLSSTQQEASELPPAHSIGVRPSLHQQMTLSHPTDLHENLKPFLMLKSTAAHDLKPHRKGEISLTHKVIPHNPPKPLKNIVTHGQTHKMTALRSDQDQVEYTLSLNGSYKPLDLEVTVMSELAEAKHILPKRTVNPHFQGKDPHPYHIESHHPNPTTTTVQPLDLELAIDLQTSFKEKLSENMQETTNQMMEPLEEVVAQGPEYHEMTIPISTLDQTDYPTSATRQPLDPELTITSEPTRQPYHPTTSPQTEITHPPKHKVEIHSDHVHTQHPNPTEATVQPLDLELAITPEPTAVGELSHNMHEITTQITEPPEEVVAPAQLYQEVTVPTPGQDQTEYPTTHVSSQPLDLELIITSESTREPHHPTIPEHPPKHEVEIHPEHVHTQHPNPAEATVQSLDQELTITPHLTTEGEHSQSMHEITTQITEPPEEVVAPAPEYQEVTVPTPGQDQAEYPTTHVASSQPLDLELTITSEPTRETHQPAIPTQTVIVHPPTHPVVIHPEHVHAQHPSSTKSTIQSLDMELTRTHHPTTGEFSQTIPETTTQIIEPPKKVVTQAPDHQLVTVPAPTQDQAVASSRPLDLELTITSEPTREPHHPTIPEHPPKHKVEIHTEHVHTQHPNPTEATVQPLDLELTITPQLTAEGELSQTVQEATTQITEPPEEVVAPAQLYQEVTVRTPGQDQTEYPTTHVASSQPFDLELTITSEPTREPHHPTIPEHPLVIHSEHGNTVPPNPTEATVQPLDLELTITPQLTIGEKLSHNMQESTTQSTQPPEEVVAPAQLYQEVTVPTPRQDQTEYPTTHVASSQPLDLELTITSEPTREPHHPTIPEHPLVINSEHGNTVSPNPTEATVQPLDLELSITPQLTAEGEHSQSMQESTTQITEPPEEVVVPAQLYQEVTVPTPRQDQTEYPTTHVASSQPLDLELTITSEPTREPHHPTIPEHPLVINSEHGNTVPPNPTEATVQPLDLELTITPQLTAEGELSQTVQEATTQITEPPEEVVAPAQLYQEVTVPTPGQDQTEYPTTHVASSQPLDLELTITSEPTREPHHPTIPEHPLVINSEHGNTVPPNPTEATVQPLDLELSITPQLTKLSHNMQESTTQITQPPEEVVAPAPEYQEVTVPTPGQDQAEYPTTHVASSQPLDLELTITSEPTREPHHPTIPRHPLVIHAEHAHTVPPNPTEATVQPLDLELSITPQLTAEGEHSQSMQESTTQITEPPEEVVVPAQLHQEVTVPAPTQDKAGYPTLSHVSFQPLDLELTINSEPTRETQHPITHKKTEKHPPVIHPEQVHTQHTNPTEVTVHPLDLELTVAPQLTAEGEFSQNMQETTTQTIEPPKEVEALAPVYQELTVPTPGQDRAEYPVSPSVTSQPLDLELTITSESTPESHHRTIPEETIVPTPEYPLAIYPEPVDNKHAHMTEVTIQRLHQELTVTYQNINDGELSQSMKLSTTHIIKPPKEDVAQAPEFREVTVPIPVRGQTEYPTLPRISFQSLDEELTVSSQPPTGTLYFPIPEQTTAHSSGHNVPLSPDEFRKSPKKVVAQTLEYEKGMVPAPIQRQDEYLTTRYQPLDVELTITSEPTREAYHPTTLSETTVRLPMHSQVTQVTTQYLHSEFSITRRPNTMAKRSAHMMDSPVLTSEIPMETVRHSLEHHEITVVSSVNIDTQYSSSSAIETEHSEVPEATSYPESAQSEAPITIAASLEAAHCGVFVPPEVAGSEVPATIAPAPDCPEMTLPHPDLVENQYPSPAEVTVQLLKTELTITPYSENSNTEKDLTTEQNAYMYTNICDFCLCENETLLCIHLSPMRRLHQVPVPRPDTYNDTFAILNFQGNDISYIDKNVWKAYRWTEKLILSENQLTELHKDSFEGLLSLQILDLSCNKIRYIERGTFESLPFLKYMNLGCNLLTELSYGTFQAWHGMQFLQKLILSRNPLTIVEDPYFFKLPALKYLDLGTTQVQLTTLENILMMTLELELLILPRHMACCLCKYKSDIEVVCKSVKLHCHTGCLSNTTHCLEEASIGNPEGAFMKVLQTRKENTSTELIIEPERGYSEKENDNYSSSMEEEIDFSDENDVMNALNYILPYFSEGNLEDVISTMLPYIKLLFAHDQDSDNSLDSFHNDTESLLLTNESQSGNFTYKNKLNKLYFLENLLDAEIDEVKKEGKTVVHTAKPNNLGKKFKREIFEKRWEPARAEANSLAEIEKAETGLHRMDRVLQGTGSIQKRHFKEMSDKHLWSKQSIQTPVENIAKDGQLGSPPTKELQQLSLLQKPRKLVGNSFHSEQVLPKEAREAVSSSPERSLMDKAPTTNSLPEFIDRRKDLSYTIFVLERANANVKRQSEKRYGNLRKKKSHFQVIAKSPASSALMSLVNSTSQGGFSSAGDPSFIENPFSEPYSALEAPTEKPLEEIQDITDNSDENILEPAIIAPGEISSENIPSENPAVEAPSKVITTVQKIKGPHVDIVLGPDSRVHFKEIHEPVMISPGERFEFELDQQLQPLIPNNDVRKLISHVIKTLKMDCSDPSVQLSCAKLISRTGLLMKLLSEQQEFRFSGIDWDTDQWKTEDYINESAEAHSEHKSLEPNELAKEVPGYSYNDKVILAVSITAVVTVLIIIFCLVVVYSHRAKKGDEEKCSREDKEGTMKTSATEAEESEAAEDAEGSE", "length": 3507, "header": "tr|A0A9J7H1Z0-1|A0A9J7H1Z0_CRIGR Isoform 1 of Uncharacterized protein LOC107977695 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC107977695 PE=4 SV=1 CANONICAL=A0A9J7H1Z0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H1Z0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1Z0/entry#A0A9J7H1Z0-1", "sequence": { "sequence": "MSLLHFGARRLVFTWQLLWLLALAVPIPEFTGNPVQLTSEPWVPTKLWSWHPSDHPPKSPHTPAPRTDTAGTEYLGSSTSTEMLAPLEELTDSLLPFQDLSTSRGPNSEPGKLAVSHQDLTNKMIPAEKQPGNILMLNGDQIQAPILPSRFKSTVSLAEAADNQLYEMLVPPLNSQSSKATKFIVSPQELKKDLARHRKLAKVVVGNPQLQNQIKDDYYEDLNMNEAYSYNLPPQPQGNSGEAPELLGQVEPDQSETLIENPQNSQEPDQLETQVENPQNLQEAQDYYPQPSEENEPLIQKEDSAHHQHYYTLPTITGKPADTEFKITSQSRMEIESSPYEEETPAQTPSPLVGAEPFPSQQQQPAEPPEYPEEIESSGTDLGSPLQPQEEAEDVGPTGPILEDESSPSELEQPVQLTESPDEVGSGSKNQPEASVEPSEVLPIEQEAPLQAAESAIENIVETPQVTAQPTQNEEHHYHLPYVTVRPVGSNTTSELTKEMEPSLAQQEFPVHPLESTDEMEPVLNEEEPPAQASEPPGESQFQSQLEVPTQALEYAEEFKPSSTEQEQAVQFSEPHEATVLPPGQQSSLSYVTGQPPDTEITVTEKPLAEMGTSPVYHEPTASSEEVELSNQQGVLSQSPEPILYNKPLSQQEDTAGVLQIPEEGEPLPAQEETPEQILELPNEEVSQPPGHDGVTVPSLSHGQVHPPVSHYAHTMHPTIPKEETLLEEPSASQQGSSPWPSMTNKFSLADLEEILRTAHPKSHKTTVKHVDLELTITPEISLEDGSVLFPEEDLLRPIDSTEQGNFSQIQTNALSQPPYFSETESPAFQEAIDHTTHHSKKVHLSSTQQEASELPPAHSIGVRPSLHQQMTLSHPTDLHENLKPFLMLKSTAAHDLKPHRKGEISLTHKVIPHNPPKPLKNIVTHGQTHKMTALRSDQDQVEYTLSLNGSYKPLDLEVTVMSELAEAKHILPKRTVNPHFQGKDPHPYHIESHHPNPTTTTVQPLDLELAIDLQTSFKEKLSENMQETTNQMMEPLEEVVAQGPEYHEMTIPISTLDQTDYPTSATRQPLDPELTITSEPTRQPYHPTTSPQTEITHPPKHKVEIHSDHVHTQHPNPTEATVQPLDLELAITPEPTAVGELSHNMHEITTQITEPPEEVVAPAQLYQEVTVPTPGQDQTEYPTTHVSSQPLDLELIITSESTREPHHPTIPEHPPKHEVEIHPEHVHTQHPNPAEATVQSLDQELTITPHLTTEGEHSQSMHEITTQITEPPEEVVAPAPEYQEVTVPTPGQDQAEYPTTHVASSQPLDLELTITSEPTRETHQPAIPTQTVIVHPPTHPVVIHPEHVHAQHPSSTKSTIQSLDMELTRTHHPTTGEFSQTIPETTTQIIEPPKKVVTQAPDHQLVTVPAPTQDQAVASSRPLDLELTITSEPTREPHHPTIPEHPPKHKVEIHTEHVHTQHPNPTEATVQPLDLELTITPQLTAEGELSQTVQEATTQITEPPEEVVAPAQLYQEVTVRTPGQDQTEYPTTHVASSQPFDLELTITSEPTREPHHPTIPEHPLVIHSEHGNTVPPNPTEATVQPLDLELTITPQLTIGEKLSHNMQESTTQSTQPPEEVVAPAQLYQEVTVPTPRQDQTEYPTTHVASSQPLDLELTITSEPTREPHHPTIPEHPLVINSEHGNTVSPNPTEATVQPLDLELSITPQLTAEGEHSQSMQESTTQITEPPEEVVVPAQLYQEVTVPTPRQDQTEYPTTHVASSQPLDLELTITSEPTREPHHPTIPEHPLVINSEHGNTVPPNPTEATVQPLDLELTITPQLTAEGELSQTVQEATTQITEPPEEVVAPAQLYQEVTVPTPGQDQTEYPTTHVASSQPLDLELTITSEPTREPHHPTIPEHPLVINSEHGNTVPPNPTEATVQPLDLELSITPQLTKLSHNMQESTTQITQPPEEVVAPAPEYQEVTVPTPGQDQAEYPTTHVASSQPLDLELTITSEPTREPHHPTIPRHPLVIHAEHAHTVPPNPTEATVQPLDLELSITPQLTAEGEHSQSMQESTTQITEPPEEVVVPAQLHQEVTVPAPTQDKAGYPTLSHVSFQPLDLELTINSEPTRETQHPITHKKTEKHPPVIHPEQVHTQHTNPTEVTVHPLDLELTVAPQLTAEGEFSQNMQETTTQTIEPPKEVEALAPVYQELTVPTPGQDRAEYPVSPSVTSQPLDLELTITSESTPESHHRTIPEETIVPTPEYPLAIYPEPVDNKHAHMTEVTIQRLHQELTVTYQNINDGELSQSMKLSTTHIIKPPKEDVAQAPEFREVTVPIPVRGQTEYPTLPRISFQSLDEELTVSSQPPTGTLYFPIPEQTTAHSSGHNVPLSPDEFRKSPKKVVAQTLEYEKGMVPAPIQRQDEYLTTRYQPLDVELTITSEPTREAYHPTTLSETTVRLPMHSQVTQVTTQYLHSEFSITRRPNTMAKRSAHMMDSPVLTSEIPMETVRHSLEHHEITVVSSVNIDTQYSSSSAIETEHSEVPEATSYPESAQSEAPITIAASLEAAHCGVFVPPEVAGSEVPATIAPAPDCPEMTLPHPDLVENQYPSPAEVTVQLLKTELTITPYSENSNTEKDLTTEQNAYMYTNICDFCLCENETLLCIHLSPMRRLHQVPVPRPDTYNDTFAILNFQGNDISYIDKNVWKAYRWTEKLILSENQLTELHKDSFEGLLSLQILDLSCNKIRYIERGTFESLPFLKYMNLGCNLLTELSYGTFQAWHGMQFLQKLILSRNPLTIVEDPYFFKLPALKYLDLGTTQVQLTTLENILMMTLELELLILPRHMACCLCKYKSDIEVVCKSVKLHCHTGCLSNTTHCLEEASIGNPEGAFMKVLQTRKENTSTELIIEPERGYSEKENDNYSSSMEEEIDFSDENDVMNALNYILPYFSEGNLEDVISTMLPYIKLLFAHDQDSDNSLDSFHNDTESLLLTNESQSGNFTYKNKLNKLYFLENLLDAEIDEVKKEGKTVVHTAKPNNLGKKFKREIFEKRWEPARAEANSLAEIEKAETGLHRMDRVLQGTGSIQKRHFKEMSDKHLWSKQSIQTPVENIAKDGQLGSPPTKELQQLSLLQKPRKLVGNSFHSEQVLPKEAREAVSSSPERSLMDKAPTTNSLPEFIDRRKDLSYTIFVLERANANVKRQSEKRYGNLRKKKSHFQVIAKSPASSALMSLVNSTSQGGFSSAGDPSFIENPFSEPYSALEAPTEKPLEEIQDITDNSDENILEPAIIAPGEISSENIPSENPAVEAPSKVITTVQKIKGPHVDIVLGPDSRVHFKEIHEPVMISPGERFEFELDQQLQPLIPNNDVRKLISHVIKTLKMDCSDPSVQLSCAKLISRTGLLMKLLSEQQEFRFSGIDWDTDQWKTEDYINESAEAHSEHKSLEPNELAKEVPGYSYNDKVILAVSITAVVTVLIIIFCLVVVYSHRAKKGDEEKCSREDKEGTMKTSATEAEESEAAEDAEGSE", "length": 3507, "header": "tr|A0A9J7H1Z0-1|A0A9J7H1Z0_CRIGR Isoform 1 of Uncharacterized protein LOC107977695 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC107977695 PE=4 SV=1 CANONICAL=A0A9J7H1Z0-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1174, "start_aa": "Thr", "end_pos": 1174, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1174", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1290, "start_aa": "Thr", "end_pos": 1290, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1290", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1861, "start_aa": "Thr", "end_pos": 1861, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1861", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1971, "start_aa": "Thr", "end_pos": 1971, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1971", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 2201, "start_aa": "Thr", "end_pos": 2201, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr2201", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 2247, "start_aa": "Thr", "end_pos": 2247, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr2247", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 398, "start_aa": "Thr", "end_pos": 398, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr398", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H1Z0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1Z0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H1Z0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1Z0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:107977695", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:107977695", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 2642, "end_pos": 2644, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2668, "end_pos": 2670, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2857, "end_pos": 2859, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2884, "end_pos": 2886, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2904, "end_pos": 2906, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2967, "end_pos": 2969, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2976, "end_pos": 2978, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2982, "end_pos": 2984, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3216, "end_pos": 3218, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3413, "end_pos": 3415, "annotation": "n_glycosylation_sequon" }, { "start_pos": 491, "end_pos": 493, "annotation": "n_glycosylation_sequon" }, { "start_pos": 806, "end_pos": 808, "annotation": "n_glycosylation_sequon" }, { "start_pos": 949, "end_pos": 951, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7H1Z0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1Z0" }, { "id": "PF14914", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14914" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "LRRC37A/B like protein 1 C-terminal", "eco_id": "ECO_0000259", "start_pos": 3328, "end_pos": 3473, "start_aa": "Ser", "end_aa": "Gly", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7H1Z0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1Z0" }, { "id": "PF15779", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15779" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Leucine-rich repeat-containing protein 37 N-terminal", "eco_id": "ECO_0000259", "start_pos": 440, "end_pos": 503, "start_aa": "Glu", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 398, 1174, 1290, 1861, 1971, 2201, 2247 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { 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This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035302995", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302995" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H208", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H208" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Aspdh", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H208", "locus": {} } ], "crossref": [ { "id": "A0A9J7H208", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H208", "database": "AlphaFoldDB", "categories": [] }, { "id": "100755598", "url": "https://www.ncbi.nlm.nih.gov/gene/100755598", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002811", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002811", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005106", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005106", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036291", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036291", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100755598", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755598", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H208", "url": "https://www.orthodb.org/?gene=A0A9J7H208", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31873", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31873", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31873:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31873:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01958", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01958", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03447", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03447", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035302995", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302995", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H208", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H208", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H208-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H208-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATSVVPQVPQKVGVVGYGRLGQSLVSRLLAQGPELGLELVFVWNRDPGRMAGSVPPALQLQDLTTLKERHPDLVVEVAHPNIIHESGVQILRHANLLVGSPSALADQTTEQQLMEASNCWGHTVFVARGALWGTEDIRRLDASGGLQSLRVTMATHPDGFRLEGSLAAAHISGPRTVLYEGPVRGLCPLAPRNSNTMAAAALAAPSLGFDRVIGVLVADLSLKDMHVVDVELKGPPGPTGHSFAVHTHRENPAQPGAVTGSATVTAFWGSLLGASRPLQESLDFCALQNSHAAASSPPDLGFTSADKSPPLPLLSPRPLSALQSVPGGLPYRASYLGASEAFGNCSQECSGGREL", "length": 356, "header": "tr|A0A9J7H208-1|A0A9J7H208_CRIGR Isoform 1 of Aspartate dehydrogenase domain-containing protein OS=Cricetulus griseus OX=10029 GN=Aspdh PE=3 SV=1 CANONICAL=A0A9J7H208-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H208-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H208/entry#A0A9J7H208-1", "sequence": { "sequence": "MATSVVPQVPQKVGVVGYGRLGQSLVSRLLAQGPELGLELVFVWNRDPGRMAGSVPPALQLQDLTTLKERHPDLVVEVAHPNIIHESGVQILRHANLLVGSPSALADQTTEQQLMEASNCWGHTVFVARGALWGTEDIRRLDASGGLQSLRVTMATHPDGFRLEGSLAAAHISGPRTVLYEGPVRGLCPLAPRNSNTMAAAALAAPSLGFDRVIGVLVADLSLKDMHVVDVELKGPPGPTGHSFAVHTHRENPAQPGAVTGSATVTAFWGSLLGASRPLQESLDFCALQNSHAAASSPPDLGFTSADKSPPLPLLSPRPLSALQSVPGGLPYRASYLGASEAFGNCSQECSGGREL", "length": 356, "header": "tr|A0A9J7H208-1|A0A9J7H208_CRIGR Isoform 1 of Aspartate dehydrogenase domain-containing protein OS=Cricetulus griseus OX=10029 GN=Aspdh PE=3 SV=1 CANONICAL=A0A9J7H208-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 240, "start_aa": "Thr", "end_pos": 240, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr240", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H208", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H208" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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"https://www.ebi.ac.uk/QuickGO/term/GO:0033735", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H208", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H208" } ], "pmid": "" }, { "name": "NADP binding", "id": "GO:0050661", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050661", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H208", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H208" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 345, "end_pos": 347, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7H208", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H208" }, { "id": "PF01958", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01958" } ], "ann_type": "Domain_Extent_Annotation", 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Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035303441", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303441" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H210", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H210" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100761566", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H210", "locus": {} } ], "crossref": [ { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100761566", "url": "https://www.ncbi.nlm.nih.gov/gene/100761566", "database": "GeneID", "categories": [ 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"MSQRVRTMDTSEGLVTFEDVCVDFTWDEWQDLDDAQRKLYRDVMLETYSSLLSLNQCDPKPELILKLEQEAGPWKAEDALNQSLPDMQHVNDPNEISQDNRQIHGCNLVIAKSSTSAEERAKAGKTLTSSNCVLRLAVKSNMSSGMRPRALNMWDNALLPSEPSEMQAVEELDLPNVTRMSPRFPEPLSLYHSTKCEEQHFQYCGHGKAFHTKTMWLQNAFPIRDPSSKLKNYKKGLEKLAFPTQGGIEVQEQTFECKVCGKLFYKNCHLTQHLKTHKEKKCYKGNDCEPIFSIQSNVPKHQHLNVGEESYTCNEDEKYTCQKPEKSVQQRIMGDGKNVYRKTICSKLNHSVQQSPHKNEKSHECSISGKTISKSDLQLQTPHRYENAYECNTCGKTFNHTPHVYSHSRANTAEKPYECRDCQQSKLIVNQQTHTQEKRYVCNVCGKGFYKRAHLNAHQRTHTGEKPYDCKECGKTFRLKSFLVVHQRIHTGEKPFVCNTCGKSFKQRTSLYTHIRIHTGEKPYECKECRKSFILKSYLTVHQRTHSGEKPYECDVCGKAFKQNSHLHAHKRTHTSEKPYECIVCGKSYKQSPSLYTHKKIHTSEKPYECRQCRKSFSLKFHLTRHQRTHSGGKDYQ", "length": 637, "header": "tr|A0A9J7H210-1|A0A9J7H210_CRIGR Isoform 1 of Zinc finger protein 39 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100761566 PE=3 SV=1 CANONICAL=A0A9J7H210-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H210-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H210/entry#A0A9J7H210-1", "sequence": { "sequence": 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"MIQSRKYLTDMQHVNDPNEISQDNRQIHGCNLVIAKSSTSAEERAKAGKTLTSSNCVLRLAVKSNMSSGMRPRALNMWDNALLPSEPSEMQAVEELDLPNVTRMSPRFPEPLSLYHSTKCEEQHFQYCGHGKAFHTKTMWLQNAFPIRDPSSKLKNYKKGLEKLAFPTQGGIEVQEQTFECKVCGKLFYKNCHLTQHLKTHKEKKCYKGNDCEPIFSIQSNVPKHQHLNVGEESYTCNEDEKYTCQKPEKSVQQRIMGDGKNVYRKTICSKLNHSVQQSPHKNEKSHECSISGKTISKSDLQLQTPHRYENAYECNTCGKTFNHTPHVYSHSRANTAEKPYECRDCQQSKLIVNQQTHTQEKRYVCNVCGKGFYKRAHLNAHQRTHTGEKPYDCKECGKTFRLKSFLVVHQRIHTGEKPFVCNTCGKSFKQRTSLYTHIRIHTGEKPYECKECRKSFILKSYLTVHQRTHSGEKPYECDVCGKAFKQNSHLHAHKRTHTSEKPYECIVCGKSYKQSPSLYTHKKIHTSEKPYECRQCRKSFSLKFHLTRHQRTHSGGKDYQ", "length": 561, "header": "tr|A0A9J7H5F5-1|A0A9J7H5F5_CRIGR Computationally mapped isoform of Zinc finger protein OZF isoform X4 OS=Cricetulus griseus OX=10029 GN=LOC100761566 PE=3 SV=1 CANONICAL=A0A9J7H210-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H5S3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H210/entry#A0A9J7H5S3-1", "sequence": { "sequence": "MLETYSSLLSLNQCDPKPELILKLEQEAGPWKAEDALNQSLPDMQHVNDPNEISQDNRQIHGCNLVIAKSSTSAEERAKAGKTLTSSNCVLRLAVKSNMSSGMRPRALNMWDNALLPSEPSEMQAVEELDLPNVTRMSPRFPEPLSLYHSTKCEEQHFQYCGHGKAFHTKTMWLQNAFPIRDPSSKLKNYKKGLEKLAFPTQGGIEVQEQTFECKVCGKLFYKNCHLTQHLKTHKEKKCYKGNDCEPIFSIQSNVPKHQHLNVGEESYTCNEDEKYTCQKPEKSVQQRIMGDGKNVYRKTICSKLNHSVQQSPHKNEKSHECSISGKTISKSDLQLQTPHRYENAYECNTCGKTFNHTPHVYSHSRANTAEKPYECRDCQQSKLIVNQQTHTQEKRYVCNVCGKGFYKRAHLNAHQRTHTGEKPYDCKECGKTFRLKSFLVVHQRIHTGEKPFVCNTCGKSFKQRTSLYTHIRIHTGEKPYECKECRKSFILKSYLTVHQRTHSGEKPYECDVCGKAFKQNSHLHAHKRTHTSEKPYECIVCGKSYKQSPSLYTHKKIHTSEKPYECRQCRKSFSLKFHLTRHQRTHSGGKDYQ", "length": 594, "header": "tr|A0A9J7H5S3-1|A0A9J7H5S3_CRIGR Computationally mapped isoform of Zinc finger protein 73 isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100761566 PE=3 SV=1 CANONICAL=A0A9J7H210-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H210", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H210" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H210", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H210" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100761566", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761566", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H210", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H210" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H210", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H210" } ], "pmid": "" }, { "name": "RNA polymerase II transcription regulatory region sequence-specific DNA binding", "id": "GO:0000977", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000977", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H210", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H210" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H210", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H210" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity", "id": "GO:0003700", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003700", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H210", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H210" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H210", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H210" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H210", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H210" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 141, "end_pos": 143, "annotation": "n_glycosylation_sequon" }, { "start_pos": 176, "end_pos": 178, "annotation": "n_glycosylation_sequon" }, { "start_pos": 349, "end_pos": 351, "annotation": "n_glycosylation_sequon" }, { "start_pos": 399, "end_pos": 401, "annotation": "n_glycosylation_sequon" }, { "start_pos": 81, "end_pos": 83, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7H210", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H210" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 255, "end_pos": 282, "start_aa": "Phe", "end_aa": "Cys", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7H210", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H210" }, { "id": "PS50805", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50805" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KRAB", "eco_id": "ECO_0000259", "start_pos": 15, "end_pos": 86, "start_aa": "Val", "end_aa": "Asp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 141, "end_pos": 143 }, { "start_pos": 176, "end_pos": 178 }, { "start_pos": 349, "end_pos": 351 }, { "start_pos": 399, "end_pos": 401 }, { "start_pos": 81, "end_pos": 83 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7H215-1", "uniprot_ac": "A0A9J7H215", "uniprot_id": "A0A9J7H215_CRIGR", "mass": { "chemical_mass": 30307.0, "monoisotopic_mass": 30307.0 }, "refseq": { "ac": "XP_035301789", "name": "uncharacterized protein LOC113831730", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035301789" }, "gene_names": [ { "name": "LOC113831730", "type": "recommended", "evidence": [ { "id": "A0A9J7H215", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H215" } ] }, { "name": "LOC113831730", "type": "synonym", "evidence": [ { "id": "XP_035301789", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035301789" } ] } ], "protein_names": [ { "name": "Uncharacterized protein LOC113831730", "type": "synonym", "evidence": [ { "id": "A0A9J7H215", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H215/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein LOC113831730", "type": "synonym", "evidence": [ { "id": "XP_035301789", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035301789" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 24% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035304145", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304145" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H259", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H259" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Pik3r6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H259", "locus": {} } ], "crossref": [ { "id": "A0A9J7H259", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H259", "database": "AlphaFoldDB", "categories": [] }, { "id": "100751518", "url": "https://www.ncbi.nlm.nih.gov/gene/100751518", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019522", 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"https://www.ncbi.nlm.nih.gov/protein/XP_035303380" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: rho GTPase-activating protein 23", "type": "synonym", "evidence": [ { "id": "XP_035303380", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303380" }, { "id": "A0A9J7H2C2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2C2/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035303380", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303380" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H2C2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2C2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Arhgap23", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2C2", "locus": {} } ], "crossref": [ { "id": "cd01253", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01253", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd04395", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04395", "database": "CDD", 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[ "Protein Classification" ] }, { "id": "PTHR23175:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23175:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00620", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00620", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF15410", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15410", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17820", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17820", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035303380", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303380", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H2C2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2C2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H2C2-1", "url": 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"length": 1490, "header": "tr|A0A9J7H2C2-1|A0A9J7H2C2_CRIGR Isoform 1 of LOW QUALITY PROTEIN: rho GTPase-activating protein 23 OS=Cricetulus griseus OX=10029 GN=Arhgap23 PE=4 SV=1 CANONICAL=A0A9J7H2C2-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1436, "start_aa": "Thr", "end_pos": 1436, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1436", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H2C2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2C2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H2C2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2C2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100755359", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755359", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "GTPase activator activity", "id": "GO:0005096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005096", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H2C2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2C2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H2C2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2C2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1073, "end_pos": 1075, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7H2C2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2C2" }, { "id": "PS50106", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50106" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PDZ", "eco_id": "ECO_0000259", "start_pos": 71, "end_pos": 160, "start_aa": "His", "end_aa": "Asp", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7H2C2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2C2" }, { "id": "PS50003", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50003" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PH", "eco_id": "ECO_0000259", "start_pos": 691, "end_pos": 810, "start_aa": "Asp", "end_aa": "Arg", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7H2C2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2C2" }, { "id": "PS50238", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50238" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Rho-GAP", "eco_id": "ECO_0000259", "start_pos": 907, "end_pos": 1099, "start_aa": "Ile", "end_aa": "Phe", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 1436 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], 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Binds to G(i)-alpha and G(o)-alpha, but not to G(s)-alpha.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H2F0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2F0#function" }, { "database": "UniProtKB", "id": "ARBA00025071", "url": "https://www.uniprot.org/uniprotkb/ARBA00025071#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H2F0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2F0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Rgs5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2F0", "locus": {} } ], "crossref": [ { "id": "A0A9J7H2F0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H2F0", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd08717", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08717", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100770163", "url": "https://www.ncbi.nlm.nih.gov/gene/100770163", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR016137", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016137", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024066", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024066", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034956", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034956", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036305", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036305", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044926", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044926", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100770163", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770163", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H2F0", "url": "https://www.orthodb.org/?gene=A0A9J7H2F0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10845", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10845", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10845:SF42", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10845:SF42", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00615", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00615", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035301702", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035301702", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H2F0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2F0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H2F0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2F0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVEHNQSLKDGSSMELGKQAQINNHNAVWAKEIKIKLGILLQKPDSAVDLVIPYNEKPEKPAKSHKPSLDEALQWRHSLDKLLHNNYGRATFKSFLKSEFSEENLEFWVACEDYKKIKSPVKMAEKAKQIYEEFIQTEAPKEVNIDHFTKGITMKNLVDPSPRSFDLAQKRIHALMEKDSLPRFVRSEFYKELIK", "length": 195, "header": "tr|A0A9J7H2F0-1|A0A9J7H2F0_CRIGR Isoform 1 of Regulator of G-protein signaling 5 OS=Cricetulus griseus OX=10029 GN=Rgs5 PE=4 SV=1 CANONICAL=A0A9J7H2F0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H2F0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2F0/entry#A0A9J7H2F0-1", "sequence": { "sequence": "MVEHNQSLKDGSSMELGKQAQINNHNAVWAKEIKIKLGILLQKPDSAVDLVIPYNEKPEKPAKSHKPSLDEALQWRHSLDKLLHNNYGRATFKSFLKSEFSEENLEFWVACEDYKKIKSPVKMAEKAKQIYEEFIQTEAPKEVNIDHFTKGITMKNLVDPSPRSFDLAQKRIHALMEKDSLPRFVRSEFYKELIK", "length": 195, "header": "tr|A0A9J7H2F0-1|A0A9J7H2F0_CRIGR Isoform 1 of Regulator of G-protein signaling 5 OS=Cricetulus griseus OX=10029 GN=Rgs5 PE=4 SV=1 CANONICAL=A0A9J7H2F0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H2F0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2F0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035302427", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302427" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H2F2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2F2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Slc13a3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2F2", "locus": {} } ], "crossref": [ { "id": "A0A9J7H2F2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H2F2", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd01115", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01115", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100750672", "url": "https://www.ncbi.nlm.nih.gov/gene/100750672", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001898", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001898", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100750672", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100750672", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H2F2", "url": "https://www.orthodb.org/?gene=A0A9J7H2F2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10283", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10283", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10283:SF62", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10283:SF62", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00939", "url": 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Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 44% of CDS bases frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035301788", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035301788" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H2K6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2K6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113838442", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2K6", "locus": {} } ], "crossref": [ { "id": "113838442", "url": "https://www.ncbi.nlm.nih.gov/gene/113838442", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013106", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013106", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050199", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050199", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113838442", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113838442", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H2K6", "url": "https://www.orthodb.org/?gene=A0A9J7H2K6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23266", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23266", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07686", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07686", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035301788", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035301788", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H2K6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2K6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H2K6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2K6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQKESEDKSDSLWSPRSAAGEAQETQMDFSLIVRKGLHDVREWRIKVCRKFAVTGKPHSVSVDRFKNQFSLKLSSAPTEDTALPYTAADTVSRFPVCPETTSICPVPGYPEESGPGLLQPSQTLSLTCSFSGFSLSTSGMGVGWIHQPSGKGLEWLAIIWWDDDKYYNPSLKSRLTISKDTSNNRVTLKIASVDTADTATYYCVHCEVKLVESGGGLVKPAGSLKLSCTASGFTFTXLNMHWVHQAPWKGLEWVAYVRTESNNYATSYADSVKGRFTISRDDSRSMADLQMNNLRTDDTANYYCTSNTLRSLQCEPRQKPPWQLPMTSRGRSASIKPRFRHNGLFSVL", "length": 348, "header": "tr|A0A9J7H2K6-1|A0A9J7H2K6_CRIGR Isoform 1 of LOW QUALITY PROTEIN: uncharacterized protein LOC113838442 OS=Cricetulus griseus OX=10029 GN=LOC113838442 PE=4 SV=1 CANONICAL=A0A9J7H2K6-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H2K6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2K6/entry#A0A9J7H2K6-1", "sequence": { "sequence": "MQKESEDKSDSLWSPRSAAGEAQETQMDFSLIVRKGLHDVREWRIKVCRKFAVTGKPHSVSVDRFKNQFSLKLSSAPTEDTALPYTAADTVSRFPVCPETTSICPVPGYPEESGPGLLQPSQTLSLTCSFSGFSLSTSGMGVGWIHQPSGKGLEWLAIIWWDDDKYYNPSLKSRLTISKDTSNNRVTLKIASVDTADTATYYCVHCEVKLVESGGGLVKPAGSLKLSCTASGFTFTXLNMHWVHQAPWKGLEWVAYVRTESNNYATSYADSVKGRFTISRDDSRSMADLQMNNLRTDDTANYYCTSNTLRSLQCEPRQKPPWQLPMTSRGRSASIKPRFRHNGLFSVL", "length": 348, "header": "tr|A0A9J7H2K6-1|A0A9J7H2K6_CRIGR Isoform 1 of LOW QUALITY PROTEIN: uncharacterized protein LOC113838442 OS=Cricetulus griseus OX=10029 GN=LOC113838442 PE=4 SV=1 CANONICAL=A0A9J7H2K6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048598.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035301586", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035301586" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H2R6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2R6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Lemd1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2R6", "locus": {} } ], "crossref": [ { "id": "A0A9J7H2R6", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H2R6", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd12940", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12940", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100760186", "url": "https://www.ncbi.nlm.nih.gov/gene/100760186", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003887", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003887", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011015", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011015", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051656", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051656", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100760186", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760186", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H2R6", "url": "https://www.orthodb.org/?gene=A0A9J7H2R6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12019", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12019", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12019:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12019:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03020", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03020", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035301586", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035301586", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H2R6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2R6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H2R6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2R6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVDVQCLSDNELRKQLKKLGFSPGPIIPSTRKMYEKKLVQLLVSPPCEPVMKRLKKLHEFEDSDESEDPAVNIILKGNIKFSKDKVKECKKKPDNEMKCLQADMGKPNSDSKSWKMVIKRPESPTSKRRIFDIYYLSQKPSKGGRYAARSIPRVSHGCATKEDYCRENQSLESSFLIQNLGNSFPWGLKLAILGIFIIVVFVYITVEKKPLLP", "length": 213, "header": "tr|A0A9J7H2R6-1|A0A9J7H2R6_CRIGR Isoform 1 of LEM domain-containing protein 1 OS=Cricetulus griseus OX=10029 GN=Lemd1 PE=4 SV=1 CANONICAL=A0A9J7H2R6-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H2R6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2R6/entry#A0A9J7H2R6-1", "sequence": { "sequence": "MVDVQCLSDNELRKQLKKLGFSPGPIIPSTRKMYEKKLVQLLVSPPCEPVMKRLKKLHEFEDSDESEDPAVNIILKGNIKFSKDKVKECKKKPDNEMKCLQADMGKPNSDSKSWKMVIKRPESPTSKRRIFDIYYLSQKPSKGGRYAARSIPRVSHGCATKEDYCRENQSLESSFLIQNLGNSFPWGLKLAILGIFIIVVFVYITVEKKPLLP", "length": 213, "header": "tr|A0A9J7H2R6-1|A0A9J7H2R6_CRIGR Isoform 1 of LEM domain-containing protein 1 OS=Cricetulus griseus OX=10029 GN=Lemd1 PE=4 SV=1 CANONICAL=A0A9J7H2R6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. 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This record is derived from a genomic sequence (NW_003614609.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_016834433", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016834433" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H2T7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2T7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Hnf4a", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2T7", "locus": {} } ], "crossref": [ { "id": "cd06931", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06931", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd06960", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06960", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100770083", "url": "https://www.ncbi.nlm.nih.gov/gene/100770083", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000536", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000536", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001628", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001628", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001723", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001723", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013088", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013088", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035500", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035500", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049635", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049635", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049636", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049636", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050274", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050274", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100770083", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770083", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H2T7", "url": "https://www.orthodb.org/?gene=A0A9J7H2T7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24083", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24083", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00104", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00104", "database": "Pfam", "categories": [ 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035303985", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303985" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H2Z3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2Z3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Rpl3l", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2Z3", "locus": {} } ], "crossref": [ { "id": "A0A9J7H2Z3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H2Z3", "database": "AlphaFoldDB", "categories": [] }, { "id": "100754394", "url": "https://www.ncbi.nlm.nih.gov/gene/100754394", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000597", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000597", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009000", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009000", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019926", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019926", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044892", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044892", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045077", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045077", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100754394", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754394", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H2Z3", "url": "https://www.orthodb.org/?gene=A0A9J7H2Z3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11363", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11363", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11363:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11363:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00297", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00297", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035303985", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303985", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H2Z3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2Z3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H2Z3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2Z3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAVAIAPCRPPIRSRPDQLGLLRTRRPYAYEERRHCACASHRKFSAPRHGHLGFLPHKRSRRHRGKVKSWPRDDPKQPVHLTAFLGYKAGMTHTLREVHRPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYRDWHKSKKKAFTKACKRWRDPSGKKQLQKDFAAMKKYCKVIRVIVHTQMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQAQLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRIGRGLHMEDGKMVKNNASTSYDMTDKSITPLGGFPHYGEVNNDFIMLKGCIAGTKKRVITLRKSLLVHHSRRALENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQKKHLEKEKPETSGNI", "length": 445, "header": "tr|A0A9J7H2Z3-1|A0A9J7H2Z3_CRIGR Isoform 1 of 60S ribosomal protein L3-like OS=Cricetulus griseus OX=10029 GN=Rpl3l PE=3 SV=1 CANONICAL=A0A9J7H2Z3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H2Z3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2Z3/entry#A0A9J7H2Z3-1", "sequence": { "sequence": "MAVAIAPCRPPIRSRPDQLGLLRTRRPYAYEERRHCACASHRKFSAPRHGHLGFLPHKRSRRHRGKVKSWPRDDPKQPVHLTAFLGYKAGMTHTLREVHRPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYRDWHKSKKKAFTKACKRWRDPSGKKQLQKDFAAMKKYCKVIRVIVHTQMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQAQLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRIGRGLHMEDGKMVKNNASTSYDMTDKSITPLGGFPHYGEVNNDFIMLKGCIAGTKKRVITLRKSLLVHHSRRALENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQKKHLEKEKPETSGNI", "length": 445, "header": "tr|A0A9J7H2Z3-1|A0A9J7H2Z3_CRIGR Isoform 1 of 60S ribosomal protein L3-like OS=Cricetulus griseus OX=10029 GN=Rpl3l PE=3 SV=1 CANONICAL=A0A9J7H2Z3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"A0A9J7H2Z3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2Z3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "translation", "id": "GO:0006412", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006412", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H2Z3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2Z3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytosolic large ribosomal subunit", "id": "GO:0022625", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022625", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H2Z3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H2Z3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 340, "end_pos": 342, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], 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{ "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7H311-1", "uniprot_ac": "A0A9J7H311", "uniprot_id": "A0A9J7H311_CRIGR", "mass": { "chemical_mass": 37466.0, "monoisotopic_mass": 37466.0 }, "refseq": { "ac": "XP_035304015", "name": "Y-box-binding protein 2 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304015" }, "gene_names": [ { "name": "Ybx2", "type": "recommended", "evidence": [ { "id": "A0A9J7H311", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H311" } ] }, { "name": "Ybx2", "type": "synonym", "evidence": [ { 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record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035304015", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304015" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H311", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H311" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ybx2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H311", "locus": {} } ], "crossref": [ { "id": "A0A9J7H311", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H311", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd04458", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04458", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100761419", "url": "https://www.ncbi.nlm.nih.gov/gene/100761419", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002059", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002059", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011129", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011129", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012340", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012340", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019844", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019844", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050181", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050181", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100761419", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761419", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H311", "url": "https://www.orthodb.org/?gene=A0A9J7H311", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11544", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11544", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00313", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00313", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035304015", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304015", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H311", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H311", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H311-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H311-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSEAEAAVVATAAPARTARQRGGTRARAAEAGGGAGGGGAASGPAAGTPSAPGPRTPGNPATAASGTPAPPARSQADKPVLAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVKGSRYAPNRRRFRRFFPRPRPAAPPPMVAEAPSGGTEPGSEGERAEDSGQRPRRRRPPPFFYRRRFVRGPRPPNQQQPIEGSDGVEPKETAPLEGDQQQGDERVPPPRFRPRYRRPFRPRPPQQPTTEGGDGETKPNQGPTDGSRPEPQRPRNRPYFQRRRQQPPGPRQPIAAETSAPINSGDPPTTILE", "length": 349, "header": "tr|A0A9J7H311-1|A0A9J7H311_CRIGR Isoform 1 of Y-box-binding protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Ybx2 PE=4 SV=1 CANONICAL=A0A9J7H311-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H311-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H311/entry#A0A9J7H311-1", "sequence": { "sequence": "MSEAEAAVVATAAPARTARQRGGTRARAAEAGGGAGGGGAASGPAAGTPSAPGPRTPGNPATAASGTPAPPARSQADKPVLAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVKGSRYAPNRRRFRRFFPRPRPAAPPPMVAEAPSGGTEPGSEGERAEDSGQRPRRRRPPPFFYRRRFVRGPRPPNQQQPIEGSDGVEPKETAPLEGDQQQGDERVPPPRFRPRYRRPFRPRPPQQPTTEGGDGETKPNQGPTDGSRPEPQRPRNRPYFQRRRQQPPGPRQPIAAETSAPINSGDPPTTILE", "length": 349, "header": "tr|A0A9J7H311-1|A0A9J7H311_CRIGR Isoform 1 of Y-box-binding protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Ybx2 PE=4 SV=1 CANONICAL=A0A9J7H311-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 300, "start_aa": "Thr", "end_pos": 300, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr300", "evidence": [ { 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"url": "https://www.ncbi.nlm.nih.gov/protein/XP_003504557" }, { "id": "A0A9J7H366", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H366/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614071.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003504557", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003504557" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H366", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H366" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Fam187a", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H366", "locus": {} } ], "crossref": [ { "id": "A0A9J7H366", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H366", "database": "AlphaFoldDB", "categories": [] }, { "id": "100758476", "url": "https://www.ncbi.nlm.nih.gov/gene/100758476", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013106", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013106", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039311", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039311", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100758476", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758476", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "AWDKDST", "url": "https://omabrowser.org/oma/group/AWDKDST/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7H366", "url": "https://www.orthodb.org/?gene=A0A9J7H366", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR32178", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32178", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR32178:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32178:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07686", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07686", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003504557", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003504557", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H366", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H366", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H366-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H366-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSLAHTTVLLWAWGSLQAFEIVEKENIFQKTPCPAFLMFDNAAYLADMSFELPCHCKPEDVSAVVWYYQKHLGSSHTTVLTDFDGRLLTEAAHVRAGSSMLVRFSIRMFSLLVFRAQPEDSGLYFCGTRKGDYFYAYDVDIQSSEGMVATFKDRGQEPLPDEYFGSLHVFTTFWEWTPCDRCGVHGEQWRLGLCYLQNPDLSPRYLKTLPDVVSCGSRAVPRKLWIRTRYHTPELLIQSCLVSCEKRNQIRKGMLTIYNYVSKMGSRPWLPQVPIQFHQQRLGHGLIISCPGARPEHAVAWDKDRQPLYRTQYLKGVNRSMRVFIDHGNHLHIRFTQLSDRGIYYCWRQGLRIAGFRLGVTSRGRYPASLSDPETRSAVELTLIGYLLITAIFVTIHVCRCCCYSFRCCPNFSTHALLQL", "length": 420, "header": "tr|A0A9J7H366-1|A0A9J7H366_CRIGR Isoform 1 of Ig-like V-type domain-containing protein FAM187A OS=Cricetulus griseus OX=10029 GN=Fam187a PE=3 SV=1 CANONICAL=A0A9J7H366-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H366-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H366/entry#A0A9J7H366-1", "sequence": { "sequence": "MSLAHTTVLLWAWGSLQAFEIVEKENIFQKTPCPAFLMFDNAAYLADMSFELPCHCKPEDVSAVVWYYQKHLGSSHTTVLTDFDGRLLTEAAHVRAGSSMLVRFSIRMFSLLVFRAQPEDSGLYFCGTRKGDYFYAYDVDIQSSEGMVATFKDRGQEPLPDEYFGSLHVFTTFWEWTPCDRCGVHGEQWRLGLCYLQNPDLSPRYLKTLPDVVSCGSRAVPRKLWIRTRYHTPELLIQSCLVSCEKRNQIRKGMLTIYNYVSKMGSRPWLPQVPIQFHQQRLGHGLIISCPGARPEHAVAWDKDRQPLYRTQYLKGVNRSMRVFIDHGNHLHIRFTQLSDRGIYYCWRQGLRIAGFRLGVTSRGRYPASLSDPETRSAVELTLIGYLLITAIFVTIHVCRCCCYSFRCCPNFSTHALLQL", "length": 420, "header": "tr|A0A9J7H366-1|A0A9J7H366_CRIGR Isoform 1 of Ig-like V-type domain-containing protein FAM187A OS=Cricetulus griseus OX=10029 GN=Fam187a PE=3 SV=1 CANONICAL=A0A9J7H366-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H366", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H366" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H366", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H366" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100758476", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758476", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1AB13-1", "protein_name": "Family with sequence similarity 187 member A", "gene_name": "FAM187A", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEMGLLGAVLLLCMADVLHSFAIEEKEDIFRRMVCPAFLMFDNAAYLADMTFELPCNCKPEEVSNVVWYFQKNMGGHETTVLTDFSGNMVLDSGHIHVGSDVLKRFTIRMFSLIIFRAQVSDSGHYMCGTKKGDFFYGYDVDVQPTKHITVAFLDIGQHVQDDYTGKAFSLFTTFWDWTKCDRCGVRGEQRRIGLCYVQSARLHPRYRTVLPNVTSCGSRAVPARLQRSGRRWKPEVAVRSCMAPCPQENNPQEGVQAISNVIYKLGQKPWLPRVPTQFYRHPLGRDLVIACPGARPEHAVAWDKGSVRLYRSRYLVGVNKTMRVFIDHGNHLHIRRVRFSDRGTYFCWREGKLAAGLRLRVSYEAQRRRSLDDPETIYIIKAIGVSYVLVGAIFIGVHLCRCCSRVLRYSVRV", "length": 414 }, "evidence": [ { "id": "A0A9J7H366", "url": "https://omabrowser.org/oma/group/A0A9J7H366/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A7E3C4-1", "protein_name": "Ig-like V-type domain-containing protein FAM187A", "gene_name": "FAM187A", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MNLAHTTVLLWAWGSLQAFEIVEKENIFQRTPCPAFLMFDNAAYLTDMSFELPCPCKPEEVSAVVWYYQKHLGSSHTKVLTDFDGRVLTEAAQVRVGSDMLVRFSIRMFSLLVFRAQPEDSGLYFCGTRKGDYFYAYDVDIQSSEGMVATFKDQGQEPLEDEYHGSLRVFTTFWEWTPCDRCGVRGEQWRIGLCYLQSPDLSPRYRKILPNVVSCGSRAVPRQLRAKASDHNPELLVRSCLMPCEKKKKVQEGVMAIFNYVSKVGSRPWLPQVPIQFHQQRLGHGLIISCPGARPEHAVAWDKDHQYLYRTQYLKGVNGSMRVFIDHGNHLHIRFTQLEDRGIYYCWRQGERIAGFRLGVTSPGRYPVSFSDPETRAALGLILIGYMLITVIFISIHLCRCCCYLFRFCPNFSPRLSRPQL", "length": 421 }, "evidence": [ { "id": "A0A9J7H366", "url": "https://omabrowser.org/oma/group/A0A9J7H366/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F1RR01-1", "protein_name": "Family with sequence similarity 187 member A", "gene_name": "FAM187A", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MNPAHTTVLLWVWGSLQAFEIVEKENIFQRTPCPAFLMFDNAAYLADMSFELPCHCKPEEVAAVVWYYQKHLGSSHTKVLTDFDGRVLTEAAQVRVGSDMLVRFSIRMFSLLVFRAQPEDSGLYFCGTRKGDYFYAYDVDIQSGEGMVATFKDQGQEPFADEYHGSLRVFTTFWEWTPCDRCGVRGEQWRIGLCYLQSPDLSPRYRRTLPDVVSCGSRAVPRPLRAKVSDHTPELLVRSCLVPCETTKIQKGVMAIFNYVSKVGSRPWLPQVPIQFHQQRLGHGLIISCPGARPEHAVAWDKDRQYLYRTQYLRGVNRSMRVFIDHGNHLHIRFTQLEDRGIYYCWRQGERIAGFRLGVTQRGRYPASFSDPETRAALRLTLIGYLLITAVFVTVHLCRCCCHLFRCWPDLSP", "length": 413 }, "evidence": [ { "id": "A0A9J7H366", "url": "https://omabrowser.org/oma/group/A0A9J7H366/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q6AXV7-1", "protein_name": "Ig-like V-type domain-containing protein FAM187A", "gene_name": "Fam187a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRLAPTTVLLWAWGSLQAFEIVEKENIFQRTPCPAFLVFDNTAYLADMSFELPCHCKPEDVSAVVWYYQKYLGSSHTTVLTDFDGRLLTEAAHVRVGSSMLARFSIRMFSLLVFRAQPEDSGLYFCGTRNGDYFYAYDVDIQSHKGMVASFRDKGQEPLPDEYYGSLHVFTTFWEWTPCDRCGVRGEQWRFGLCYLQNPNLSPRYIKTLPDVVSCGSRAVPWKLHLKTKYHTPELLIQSCLVSCKKNKMGEGILAIYNYVSKLGGRPWVPQVPIQFHQQRLGHGLIISCPGARPEHAVAWDKDSQPLYRTQYLKGVNRSMRVFIDHGNHLHIRFTQLSDRGIYYCWRQGLKIAGFRLGVTSRGRYPASLSDPETRTAVELTLIGYLLIAVVFVTIHLCRCCCQSRCCPNFSAQTLLQL", "length": 418 }, "evidence": [ { "id": "A0A9J7H366", "url": "https://omabrowser.org/oma/group/A0A9J7H366/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9D3R5-1", "protein_name": "Ig-like V-type domain-containing protein FAM187A", "gene_name": "Fam187a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSLAHTTVLLWAWGSLQAFEIVEKESVFQRTPCPAFLVFDNAAYLADMSFELPCHCKPEDVSAVVWYYQKHLGSKRTTVLTDFDGRLLTEAAHVRVGSSMLVRFSIRMFSLLVFRAQPEDTGLYFCGTREGDYFYAYDVDIQSNKEIVASFKDMAQEPLPDEYYGALHVFTTFWEWTPCDRCGVRGEQWRFGLCYLQYPDLSPRYIKTRSAVVSCGSGAVPWKLHLQTKYHTPELQFQSCLVSCQKRNKTRKGVLAIYSYVSKLGSRPWVPQVPIQFHQQRLGHGLIISCPGARPEHAVAWDKDNQPLYRAQYLKGVNRSMRVFIDHGNHLHIRFTQLSDRGIYYCWLQGLKIAGFRLGVITRGRYPASLSDPETRTAIELTLMGYLLITIFFITIHLCRCCCQSRCCPNFSAQTLL", "length": 417 }, "evidence": [ { "id": "A0A9J7H366", "url": "https://omabrowser.org/oma/group/A0A9J7H366/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H366", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H366" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 318, "end_pos": 320, "annotation": "n_glycosylation_sequon" }, { "start_pos": 411, "end_pos": 413, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7H366", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H366" }, { "id": "PS50835", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50835" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ig-like", "eco_id": "ECO_0000259", "start_pos": 268, "end_pos": 346, "start_aa": "Pro", "end_aa": "Cys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 318, "end_pos": 320 }, { "start_pos": 411, "end_pos": 413 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", 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"length": 1887, "header": "tr|A0A9J7H3B9-1|A0A9J7H3B9_CRIGR Isoform 1 of Coiled-coil domain-containing protein 187 isoform X2 OS=Cricetulus griseus OX=10029 GN=Ccdc187 PE=4 SV=1 CANONICAL=A0A9J7H3B9-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1640, "start_aa": "Thr", "end_pos": 1640, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1640", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 853, "start_aa": "Thr", "end_pos": 853, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr853", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H3B9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3B9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H3B9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3B9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:113836471", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113836471", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H3B9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3B9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "microtubule binding", "id": "GO:0008017", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008017", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H3B9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3B9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "microtubule anchoring", "id": "GO:0034453", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034453", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H3B9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3B9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1235, "end_pos": 1237, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1457, "end_pos": 1459, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1648, "end_pos": 1650, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1837, "end_pos": 1839, "annotation": "n_glycosylation_sequon" }, { "start_pos": 418, "end_pos": 420, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": 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"id": "A0A9J7H3C8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3C8/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 709-like isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035302991", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302991" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 51% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035302991", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302991" } ] }, { "annotation": "May be involved in transcriptional regulation.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H3C8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3C8#function" }, { "database": "UniProtKB", "id": "ARBA00003767", "url": "https://www.uniprot.org/uniprotkb/ARBA00003767#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H3C8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3C8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113836523", "url": 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griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 49% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035304006", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304006" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H3D6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3D6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC103160130", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3D6", "locus": {} } ], "crossref": [ { "id": "A0A9J7H3D6", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H3D6", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd23572", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd23572", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "103160130", "url": "https://www.ncbi.nlm.nih.gov/gene/103160130", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR016054", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016054", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045860", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045860", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050918", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050918", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:103160130", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103160130", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H3D6", "url": "https://www.orthodb.org/?gene=A0A9J7H3D6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR20914", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20914", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR20914:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20914:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00021", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00021", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035304006", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304006", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H3D6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3D6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H3D6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3D6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGLTMSWPSVLKGLLAVCIFTHLFVSSVVPTISLRSLKKGCSKDGCTELAFSVTLGNHRTFRYDHQCCNTEKCNKQSKPVSLPSHEYNGVECLACYSYDAARCDTVSLKCTGVETKCLEVAGTEVTDAVSHSMIQGMGCATETACNLKNMTVMENVQINTHCFSGSPPLRPISSVLTSLFLMEALLCPLGTVTSMILLHI", "length": 200, "header": "tr|A0A9J7H3D6-1|A0A9J7H3D6_CRIGR Isoform 1 of Protein RoBo-1-like OS=Cricetulus griseus OX=10029 GN=LOC103160130 PE=4 SV=1 CANONICAL=A0A9J7H3D6-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H3D6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3D6/entry#A0A9J7H3D6-1", "sequence": { "sequence": "MGLTMSWPSVLKGLLAVCIFTHLFVSSVVPTISLRSLKKGCSKDGCTELAFSVTLGNHRTFRYDHQCCNTEKCNKQSKPVSLPSHEYNGVECLACYSYDAARCDTVSLKCTGVETKCLEVAGTEVTDAVSHSMIQGMGCATETACNLKNMTVMENVQINTHCFSGSPPLRPISSVLTSLFLMEALLCPLGTVTSMILLHI", "length": 200, "header": "tr|A0A9J7H3D6-1|A0A9J7H3D6_CRIGR Isoform 1 of Protein RoBo-1-like OS=Cricetulus griseus OX=10029 GN=LOC103160130 PE=4 SV=1 CANONICAL=A0A9J7H3D6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"A0A9J7H3E4-1", "uniprot_ac": "A0A9J7H3E4", "uniprot_id": "A0A9J7H3E4_CRIGR", "mass": { "chemical_mass": 112891.0, "monoisotopic_mass": 112891.0 }, "refseq": { "ac": "XP_035303435", "name": "RAD51-associated protein 2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303435" }, "gene_names": [ { "name": "Rad51ap2", "type": "recommended", "evidence": [ { "id": "A0A9J7H3E4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3E4" } ] }, { "name": "Rad51ap2", "type": "synonym", "evidence": [ { "id": "XP_035303435", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303435" } ] } ], "protein_names": [ { "name": "RAD51-associated protein 2", "type": "synonym", "evidence": [ { "id": "XP_035303435", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303435" }, { "id": "A0A9J7H3E4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3E4/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035303435", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303435" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H3E4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3E4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Rad51ap2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3E4", "locus": {} } ], "crossref": [ { "id": "A0A9J7H3E4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H3E4", "database": "AlphaFoldDB", "categories": [] }, { "id": "100757413", "url": "https://www.ncbi.nlm.nih.gov/gene/100757413", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR031419", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031419", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053355", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053355", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100757413", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757413", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H3E4", "url": "https://www.orthodb.org/?gene=A0A9J7H3E4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR39229", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR39229", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR39229:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR39229:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15696", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15696", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035303435", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303435", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H3E4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3E4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H3E4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3E4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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983, "header": "tr|A0A9J7H3E4-1|A0A9J7H3E4_CRIGR Isoform 1 of RAD51-associated protein 2 OS=Cricetulus griseus OX=10029 GN=Rad51ap2 PE=4 SV=1 CANONICAL=A0A9J7H3E4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H3E4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3E4/entry#A0A9J7H3E4-1", "sequence": { "sequence": 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"https://www.ncbi.nlm.nih.gov/protein/XP_035303450", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H3F3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3F3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H3F3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3F3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K7X5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7X5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K7X5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7X5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KBA9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBA9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KBA9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBA9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRVGLALILVGHVNLLVGAVLHGTVLRHVANPRGAVTPEYTTANVISVGSGLLSVSVGLVALLASRNLLRPRLHWALLTLALVNLLLSAACSMGLLLAVSLTIANGGRRLIADCHPGLLDPSIPLDQGPGHTDCSFDPTRIYVSLFLLFTKRCPVCPGPIPRPSPLCYFLVLGYSLGSLDPLFLHVCSRGYSFWLLLCGCTNPTGNWALQEGRVAGTGKEEEQEGFIPYPGYVGRSWSAI", "length": 240, "header": "tr|A0A9J7H3F3-1|A0A9J7H3F3_CRIGR Isoform 1 of Keratinocyte-associated protein 3 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100773669 PE=3 SV=1 CANONICAL=A0A9J7H3F3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H3F3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3F3/entry#A0A9J7H3F3-1", "sequence": { "sequence": "MRVGLALILVGHVNLLVGAVLHGTVLRHVANPRGAVTPEYTTANVISVGSGLLSVSVGLVALLASRNLLRPRLHWALLTLALVNLLLSAACSMGLLLAVSLTIANGGRRLIADCHPGLLDPSIPLDQGPGHTDCSFDPTRIYVSLFLLFTKRCPVCPGPIPRPSPLCYFLVLGYSLGSLDPLFLHVCSRGYSFWLLLCGCTNPTGNWALQEGRVAGTGKEEEQEGFIPYPGYVGRSWSAI", "length": 240, "header": "tr|A0A9J7H3F3-1|A0A9J7H3F3_CRIGR Isoform 1 of Keratinocyte-associated protein 3 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100773669 PE=3 SV=1 CANONICAL=A0A9J7H3F3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K7X5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3F3/entry#A0A9J7K7X5-1", "sequence": { "sequence": "MRVGLALILVGHVNLLVGAVLHGTVLRHVANPRGAVTPEYTTANVISVGSGLLSVSVGLVALLASRNLLRPRLHWALLTLALVNLLLSAACSMGLLLAVSLTIANGGRRLIADCHPGLLDPSIPLDQGPGHTDCSFDPTRIYDTALALWIPSFFMSAAEATLSGYCCVAALTLRGIGPCRKEGLQGQVRRRNRKGSFHTLVMLEGAGLPFKAPLLNPPSPAAGGADRT", "length": 228, "header": "tr|A0A9J7K7X5-1|A0A9J7H3F3_CRIGR Computationally mapped isoform of Keratinocyte-associated protein 3 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100773669 PE=3 SV=1 CANONICAL=A0A9J7H3F3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KBA9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3F3/entry#A0A9J7KBA9-1", "sequence": { "sequence": "MRVGLALILVGHVNLLVGAVLHGTVLRHVANPRGAVTPEYTTANVISVGSGLLSVSVGLVALLASRNLLRPRLHWALLTLALVNLLLSAACSMGLLLAVSLTIANGGRRLIADCHPGLLDPSIPLDQGPGHTDCSFDPTRIYDTALALWIPSFFMSAAEATLSGYCCVAALTLRGIGPCRKEGLQGQLEELTELEPPKCKRQENVQLLRYHQDFQTSQRTWV", "length": 222, "header": "tr|A0A9J7KBA9-1|A0A9J7H3F3_CRIGR Computationally mapped isoform of Keratinocyte-associated protein 3 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100773669 PE=3 SV=1 CANONICAL=A0A9J7H3F3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K7X5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7X5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K7X5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7X5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100773669", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773669", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H3F3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3F3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7H3G7-1", "uniprot_ac": "A0A9J7H3G7", "uniprot_id": "A0A9J7H3G7_CRIGR", "mass": { "chemical_mass": 84862.0, "monoisotopic_mass": 84862.0 }, "refseq": { "ac": "XP_003496513", "name": "double zinc ribbon and ankyrin repeat-containing protein 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003496513" }, "gene_names": [ { "name": "Dzank1", "type": "recommended", "evidence": [ { "id": "A0A9J7H3G7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3G7" } ] }, { "name": "Dzank1", "type": "synonym", "evidence": [ { "id": "XP_003496513", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003496513" } ] } ], "protein_names": [ { "name": "Double zinc ribbon and ankyrin repeat-containing protein 1", "type": "recommended", "evidence": [ { "id": "A0A9J7H3G7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3G7/entry#names_and_taxonomy" } ] }, { "name": "double zinc ribbon and ankyrin repeat-containing protein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003496513", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003496513" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613623.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003496513", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003496513" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H3G7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3G7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Dzank1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3G7", "locus": {} } ], "crossref": [ { "id": "100767139", "url": "https://www.ncbi.nlm.nih.gov/gene/100767139", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025874", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025874", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR026876", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026876", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052481", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052481", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100767139", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767139", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GFAHIRS", "url": "https://omabrowser.org/oma/group/GFAHIRS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7H3G7", "url": "https://www.orthodb.org/?gene=A0A9J7H3G7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JVB6", "url": "https://www.orthodb.org/?gene=A0A9J7JVB6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16058", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16058", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16058:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16058:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12773", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12773", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13287", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13287", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003496513", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003496513", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H3G7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3G7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H3G7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3G7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JVB6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVB6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JVB6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVB6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTAGSVCAPQIIPLRVPQPGKANHEIDTNTLLEMKSDTPDVNIYYTLDGSKPDFLKKVGSGENNTFKYIKPITLPDGKIQVKAVAVSKDCRQSGIVTKVFQVDYEPPKMVSPEDSVDDALKGFSKQELKNGFVGPKLRKKYKNAENKSTWNVNIRRLADLKVSERADSKTLKDLRFSESPMEIPAYHEGSGSRIAAHPSQSPGFAHITGQRSLTSTEVTRIQRDTDYLKCTHCLASRPSDPFARFCHECGAPVPPLYSYRLPPPEGAQMGVCAECGSMVPMNTPICVVCEAPLAPQLRPQASLHLKEKVICRTCGTGNPVHLRYCVTCEGTLPSTQEQWLCNGNEVPHPPSRNGETISCSRCGCQNHWEASFCDWCGAPLGISGSHSVCPKCGANNHLSARFCGTCGIYVKSITRFRMNSLALAVGGPRPFSEPRSAWQSLSVPLPSSALGSKDMGTQTSGLFYPSGKLLAKKELEAACHRQRQEKMSDHRPVLTAVSPGRGYWRKQLDHISAHLRSYAQNNPDFRALIAEPRMGKLISATVHEDGYEVSIRLNYVQVSNKNLYINKSMNLSDHFLSSVTEGGNGLYDSRSSLVSAYSQSTSDTPEGIKKMKSLKAKNFHRNPELPTPENRLLLEEVGPTGKGRLSVLEQLLDEGADPNCCDSQGRPAVTVAVVNKHHEAIPVLAQRGADIDQQWGPFRNTALHEATLLGLEGRESITTLLGCNANIQKKNARGQTAYDMALEIGDDLTTSLFATKFSQGLEDQLSPSGNPILGDN", "length": 776, "header": "tr|A0A9J7H3G7-1|A0A9J7H3G7_CRIGR Isoform 1 of Double zinc ribbon and ankyrin repeat-containing protein 1 OS=Cricetulus griseus OX=10029 GN=Dzank1 PE=4 SV=1 CANONICAL=A0A9J7H3G7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H3G7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3G7/entry#A0A9J7H3G7-1", "sequence": { "sequence": "MTAGSVCAPQIIPLRVPQPGKANHEIDTNTLLEMKSDTPDVNIYYTLDGSKPDFLKKVGSGENNTFKYIKPITLPDGKIQVKAVAVSKDCRQSGIVTKVFQVDYEPPKMVSPEDSVDDALKGFSKQELKNGFVGPKLRKKYKNAENKSTWNVNIRRLADLKVSERADSKTLKDLRFSESPMEIPAYHEGSGSRIAAHPSQSPGFAHITGQRSLTSTEVTRIQRDTDYLKCTHCLASRPSDPFARFCHECGAPVPPLYSYRLPPPEGAQMGVCAECGSMVPMNTPICVVCEAPLAPQLRPQASLHLKEKVICRTCGTGNPVHLRYCVTCEGTLPSTQEQWLCNGNEVPHPPSRNGETISCSRCGCQNHWEASFCDWCGAPLGISGSHSVCPKCGANNHLSARFCGTCGIYVKSITRFRMNSLALAVGGPRPFSEPRSAWQSLSVPLPSSALGSKDMGTQTSGLFYPSGKLLAKKELEAACHRQRQEKMSDHRPVLTAVSPGRGYWRKQLDHISAHLRSYAQNNPDFRALIAEPRMGKLISATVHEDGYEVSIRLNYVQVSNKNLYINKSMNLSDHFLSSVTEGGNGLYDSRSSLVSAYSQSTSDTPEGIKKMKSLKAKNFHRNPELPTPENRLLLEEVGPTGKGRLSVLEQLLDEGADPNCCDSQGRPAVTVAVVNKHHEAIPVLAQRGADIDQQWGPFRNTALHEATLLGLEGRESITTLLGCNANIQKKNARGQTAYDMALEIGDDLTTSLFATKFSQGLEDQLSPSGNPILGDN", "length": 776, "header": "tr|A0A9J7H3G7-1|A0A9J7H3G7_CRIGR Isoform 1 of Double zinc ribbon and ankyrin repeat-containing protein 1 OS=Cricetulus griseus OX=10029 GN=Dzank1 PE=4 SV=1 CANONICAL=A0A9J7H3G7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JVB6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3G7/entry#A0A9J7JVB6-1", "sequence": { "sequence": "MTAGSVCAPQIIPLRVPQPGKANHEIDTNTLLEMKSDTPDVNIYYTLDGSKPDFLKKVGSGENNTFKYIKPITLPDGKIQVKAVAVSKDCRQSGIVTKVFQVDYEPPKMVSPEDSVDDALKGFSKQELKNGFVGPKLRKKYKNAENKSTWNVNIRRLAESPMEIPAYHEGSGSRIAAHPSQSPGFAHITGQRSLTSTEVTRIQRDTDYLKCTHCLASRPSDPFARFCHECGAPVPPLYSYRLPPPEGAQMGVCAECGSMVPMNTPICVVCEAPLAPQLRPQASLHLKEKVICRTCGTGNPVHLRYCVTCEGTLPSTQEQWLCNGNEVPHPPSRNGETISCSRCGCQNHWEASFCDWCGAPLGISGSHSVCPKCGANNHLSARFCGTCGIYVKSITRFRMNSLALAVGGPRPFSEPRSAWQSLSVPLPSSALGSKDMGTQTSGLFYPSGKLLAKKELEAACHRQRQEKMSDHRPVLTAVSPGRGYWRKQLDHISAHLRSYAQNNPDFRALIAEPRMGKLISATVHEDGYEVSIRLNYVQVSNKNLYINKSMNLSDHFLSSVTEGGNGLYDSRSSLVSAYSQSTSDTPEGIKKMKSLKAKNFHRNPELPTPENRLLLEEVGPTGKGRLSVLEQLLDEGADPNCCDSQGRPAVTVAVVNKHHEAIPVLAQRGADIDQQWGPFRNTALHEATLLGLEGRESITTLLGCNANIQKKNARGQTAYDMALEIGDDLTTSLFATKFSQGLEDQLSPSGNPILGDN", "length": 757, "header": "tr|A0A9J7JVB6-1|A0A9J7H3G7_CRIGR Computationally mapped isoform of Double zinc ribbon and ankyrin repeat-containing protein 1 OS=Cricetulus griseus OX=10029 GN=Dzank1 PE=4 SV=1 CANONICAL=A0A9J7H3G7-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 670, "start_aa": "Thr", "end_pos": 670, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr670", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JVB6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVB6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JVB6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JVB6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100767139", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767139", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D4A039-1", "protein_name": "Double zinc ribbon and ankyrin repeat-containing protein 1", "gene_name": "Dzank1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTAGSVCAPQIIPLRVPQPGKANHEIDTNTLLEMKSDTPDVNIYYTLDGSKPDFLKKVGSGENNTFKYIKPIALPDGKIQVKAVAVSKDCRQSGIVTKVFQVDYEPPKMVSSEDHGEDALKGFSKQELKNGFVGPKLRKKYKNAENKSTWNVNLRRLADLKVGERADPKTLKDLRFSESPLEIPAYHEGASARLPTHQAQSPGFAHITGQKSLTSTEVMRIQRETDFLKCAHCLASRPSDPFARFCQECGAPVPPIFGYRLPPPEGAQMGLCAECGSMVPMNTPICVVCEAPLAPQLRPQASLYLKERVICRTCGTGNPAHLRYCVTCEGTLPPTQEQWLCNGDEVPRLPTRNGETISCSRCGCQNLWEASFCDWCGAMLGISASHSVCPKCGASNHLTARFCGSCGIYVKSITRFRMNNSLAIVAGGPRPFPEPRSAWQSLNVPLPTPATGSKKDMGTQTSGLFYPSGKLLAKKELEAASHRQRQEKMSDHRPVLTAVSPGRGYWRKQLDHISAHLRSYAQNNPEFRALIAEPRMGKLISATVHEDGYEVSIRLNYIQVSNKNLYLNKSMNLSDHFLSSVTEGGNGLYGSRSSLVSAYSQSISDTPESIKKMKNPKAKSFLANPEPLTPENRLLLEEVGSTGKGRLSVLEQLLDEGADPNCCDSQGRPAVIVAVVNKHFEAIPVLAQRGADIDQQWGPFGNTALHEATLLGLEGRESVATLLGCNANTQKKNTRGQTAYDIALEMGDDLTSALFAD", "length": 757 }, "evidence": [ { "id": "A0A9J7H3G7", "url": "https://omabrowser.org/oma/group/A0A9J7H3G7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1SBH5-1", "protein_name": "Double zinc ribbon and ankyrin repeat domains 1", "gene_name": "DZANK1", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MTAGSVCVPQIIPLRVPQPGKANHEIDNNTLLEMKSDTPDVNIYYTLDGSKPEFLKKIGYGENNTFKYTKPITLPDGKIQVKAIAVSKDCRQSAVVTKVFQVDFVPPDAASSEDTVENALKDSSKQDLKNGFVEPKVRKKYKNAENKLGWNVNLGKFPDMGERNDPKTLKDLRFSESPRETPAFREESASRPATQQTQFPGFAHITGQKSLTSTEIMRIQRETDFLKCAHCLVRRPSDPFARYCLECGSSVPPIFGCRLPPPEGAQMGLCVECENLVPMNAPICVVCEAPLAPQLQPQASLRLKDKVICRTCGTGNPAHLRYCVTCDGPLPSSQEPGTPTCYSVCSKCGASNHPSAQFCGSCGIYVKSLARPSMENSLAPAAGEPGLFAEPRSAWQSLSVTLPRADAGTKKDTGTQTTGLFYPSGTLLAKKELEVASQKQRQEKMSDHKPLLTAVSPGRGYWRKQVDHIAAHLRSYAQNNPEFRALIAEPRMGKLISATVHEDGYEVSIRLNYIQVSNKNLYLNKAVNFSDHFLSSVTEGANGLYGSRSSLVSDYSQSSSDGAEKVTRSKNFKTKAFQEKQQLTPENMLLLKEVGPAGEGRASVMEQLLDEGADPNCSDSEDRPVLSTAVMNKHHEAIPVLVQRGADVDQQWGPCNASVQKKNARGQTAYDLALEAADEPVTSLFAAQLGLDDREP", "length": 696 }, "evidence": [ { "id": "A0A9J7H3G7", "url": "https://omabrowser.org/oma/group/A0A9J7H3G7/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q1LXR6-1", "protein_name": "Double zinc ribbon and ankyrin repeat-containing protein 1", "gene_name": "dzank1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MTAGSVAAPQIIPIRIPPPGKAKHEIDSSTPVEIKSESPDVRVLYTLDGSKPELTKRPGFADSTLKYTEPVRLPVGKVYVKAMAISIDGRQSAVVTKVFVVEPSASDERELNAHDEDDSVKNDTAIDGKDVVENGTGVSSVKYLDISSNEAHRALKGPRFLSQRLGPGSSARLTAQNSQNQSADVVESPLKNLTNTQISRIQRETDFLRCPKCLSHRPSDPFARFCLHCGAPVPPIPGQRLPPTEGGQMGLCMHCKTMVPLNTAICVVCESPLDQQLQPQATLRLQDKFICHSCGTGNPAHITHCVTCESQLLRQARPVLSGQRAAPVPSSQGKMVSCSKCNRVNHSDARFCDWCGAKPGHKASSVKCSQCGASSHPYANHCGGCGVFLDGPPRMPLQVNQRQDAEEMQQTASAAELATAPPSVGLRMCADAQTQTVGLFFPSNTELKKRSQQREAELSRQEQMRDRKPLLTAISPGRGFWRKQLDHICAHLRSYTQNNTEFRALIGEPRLGRMISAVIQEDSYEVSLRINFISAPPEESRSSSAGQRSRSVTSESQNLSSVTEGRNSASPENNINTTGSEVKKKKKKKIGTSDVTENQPESKDSLLLKEVGPEGRGRIPAVQQLLDEGADPACLGKDGRPALVAAVLNGHHDVIPVLVQREADVNQASGPLKNTALHEAAALGDEGLKSVEILLGCNASIRKQNDRGQTPYDIAVAAGSSSVLSLMAAHLGQGLLLRHTKARSLSGLDTFS", "length": 752 }, "evidence": [ { "id": "A0A9J7H3G7", "url": "https://omabrowser.org/oma/group/A0A9J7H3G7/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q8C008-1", "protein_name": "Double zinc ribbon and ankyrin repeat-containing protein 1", "gene_name": "Dzank1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MTAGSVCAPQIIPLRVPQPGKANHEIDTNTLLEMKSDTPDVNIYYTLDGSKPDFLKKVGSGENNTFKYVKPITLPDGKIQVKAVAVSKDCRQSGIVTKVFQVDYEPPKMVSSEDNVEDALKGFSKQELKNGFVGPKLRKKYKNAENKSTWNVNLRRLADLKVGERADPKTLKDLRFAESPLEIPAYHEGASARLPTHQAQSPGFAHITGQKSLTSTEIMRIQRETDFLKCAHCLASRPSDPFARFCHECGAPVPPIFGYRLPPPEGAQMGLCAECGSMVPMNTPICVVCEAPLAPQLRPQASLYLKERVICRTCGTGNPAHLRYCVTCEGPLPPTQEQWLCNGDEVPHPPARNGETISCSRCGCQNLWEASFCDWCGAMLGISASHSVCPKCGASNHLTARFCGSCGIYVKSITRFRMHNSLAIVAGAPRPFPEPRSAWQSLNVPLPTSASGSKKDTGTQTSGLFYPSGKLLAKKELEAASHRQRQEKMSDHRPVLTAVSPGRGYWRKQLDHISAHLRSYAQNNPEFRALIAEPRMGKLISATVHEDGYEVSIRLNYIQVSNKSLYFNKSVNLSDHFLSSVTEGGNGLYDSRSSLVSAYSQSVSDTPESIKKMKNLKAKSFLVNPEPLTPENKLLLEEVGSSGKGRLSVLEQLLDEGADPNCCDSQGRPAVIVAVVNKHYEAIPVLAQRGADIDQQWGPFRNTALHEATLLGLEGRESIATLLGCNANAQKKNTRGQTAYDIALEMGDDLTSSLFAAKFTQGLEDQLSPPGNRILGDS", "length": 778 }, "evidence": [ { "id": "A0A9J7H3G7", "url": "https://omabrowser.org/oma/group/A0A9J7H3G7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NVP4-1", "protein_name": "Double zinc ribbon and ankyrin repeat-containing protein 1", "gene_name": "DZANK1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTAGSVCVPQIIPLRVPQPGKANHEIDNNTLLEMKSDTPDVNIYYTLDGSKPEFLKRIGYGENNTFKYIKPITLPDGKIQVKAIAVSKDCRQSGIVTKVFHVDYEPPNIVSPEDNVENVLKDSSRQEFKNGFVGSKLKKKYKNSENQRSWNVNLRKFPESPLEIPAYGGGSGSRPPTRQSQSPGFAHVSGQKCLTSTEIMRIQRETDFLKCAHCLAPRPSDPFARFCQECGSPVPPIFGCRLPPPEGAQMGLCAECRSLVPMNTPICVVCEAPLALQLQPQASLHLKEKVICRACGTGNPAHLRYCVTCEGALPSSQESMCSGDKAPPPPTQKGGTISCYRCGRWNLWEASFCGWCGAMLGIPAGCSVCPKCGASNHLSARFCGSCGICVKSLVKLSLDRSLALAAEEPRPFSESLNIPLPRSDVGTKRDIGTQTVGLFYPSGKLLAKKEQELASQKQRQEKMSDHKPLLTAISPGRGYWRRQLDHISAHLRCYAQNNPEFRALIAEPRMGKLISATVHEDGCEVSIRLNYSQVSNKNLYLNKAVNFSDHLLSSAAEGDGGLCGSRSSWVSDYSQSTSDTIEKIKRIKNFKTKTFQEKKEQLIPENRLLLKEVGPTGEGRVSVIEQLLDEGADPNCCDEDNRPVITVAVMNKHHEAIPVLVQRGADIDQQWGPLRNTALHEATLLGLAGRESTATLLGCNASIQKKNAGGQTAYDLALNTGDDLVTSLFAAKFGQGLEDQLAQTRSLSLDDC", "length": 752 }, "evidence": [ { "id": "A0A9J7H3G7", "url": "https://omabrowser.org/oma/group/A0A9J7H3G7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cilium", "id": "GO:0005929", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005929", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H3G7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3G7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H3G7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3G7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "eye photoreceptor cell development", "id": "GO:0042462", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042462", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H3G7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3G7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 146, "end_pos": 148, "annotation": "n_glycosylation_sequon" }, { "start_pos": 566, "end_pos": 568, "annotation": "n_glycosylation_sequon" }, { "start_pos": 570, "end_pos": 572, "annotation": "n_glycosylation_sequon" }, { "start_pos": 63, "end_pos": 65, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7H3G7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3G7" }, { "id": "PF12773", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12773" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DZANK-type", "eco_id": "ECO_0000259", "start_pos": 230, "end_pos": 289, "start_aa": "Cys", "end_aa": "Cys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 670 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 146, "end_pos": 148 }, { "start_pos": 566, "end_pos": 568 }, { "start_pos": 570, "end_pos": 572 }, { "start_pos": 63, "end_pos": 65 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7H3H0-1", "uniprot_ac": "A0A9J7H3H0", "uniprot_id": "A0A9J7H3H0_CRIGR", "mass": { "chemical_mass": 22805.0, "monoisotopic_mass": 22805.0 }, "refseq": { "ac": "XP_035303490", "name": "uncharacterized protein LOC118239146 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303490" }, "gene_names": [ { "name": "LOC118239146", "type": "recommended", "evidence": [ { "id": "A0A9J7H3H0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3H0" } ] }, { "name": "LOC118239146", "type": "synonym", "evidence": [ { "id": "XP_035303490", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303490" } ] } ], "protein_names": [ { "name": "Uncharacterized protein LOC118239146 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7H3H0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3H0/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein LOC118239146 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035303490", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303490" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 48% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. 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"database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H460", "url": "https://www.orthodb.org/?gene=A0A9J7H460", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11039", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11039", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11039:SF37", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11039:SF37", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00880", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00880", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14604", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14604", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035302717", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302717", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H3K4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3K4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H3K4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3K4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H460", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H460", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H460-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H460-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MADEEEYEEVIEYYTEETVYEEVPGETITEVYETTTTRTSDYGQSESSTPALVQPQPAKPMERKKVIRKKVDSSKFMTPYIQHSQKMQDLFSPNKYKENYEKAKGQPYAITSDTPELRRIKKVQDQLSEVKYRMDGDVAKTICHVDEKAKDIEHAKKVSQQVSKVLYKQNWEDTKDKYLLPPDAPELVQAIKNTAMFSKKLYTEDWEADKGLFYPYNDSPELRRVAQAQKALSDIAYKKGLTEQQTQFTSLPDPPDVEFAKKVTNQVSKQKYKEDYEKKVKGKWSETPCFEIATARMNADNLSTRKYQEDFENLKDQIYFMQTETPEYKMNKQAGIAASKVKYKEDYEKNKGKADYNVLPASENPLLRQLKAAGNVLSDKLYKENYEKTKAKSINYCETPKFQLDTILHNFSSDTKYKDSYLKNILGHYVGSFEDPYHTHCMKVTAQNSDKNYRAEYEEDRGKGFFPQTITQEYEAIKKLDQCKDHTYKVHPDKTKFTQVTDSPVLLQAQVNSKQLSDLNYKAKHESEKFKCHLPPDAPAFIQHRVNAYNLSDNVYKQDWEKSKAKKFDIKVDAIPLLAAKANSKNASDVMYKKDYEKSKGKMIGALSINDDPKMLHSLKTAKNQSDRLYRENYEKTKAKSMNYCETPKYQLDTLLKNFSEAKYKDSYVKNILGHYVGSFEDPYHTHCMKVSAQNSDKSYKAEYEEDKGRCYFPQTITQEYEAIKKLDQCKDHTYKVHPDKTKFTAVTDTPVLLQAQLNTKQLSDLNYKAKHEGEKFKCNVPADAPEFIQHRVNAYNLSDNVYKQDWEKSKAKKFDIKMDAIPLLAAKANSKNASDVMYKKDYEKSKGKMIGALSINDDPKMLHSLKTAKNQSDREYRKDYEKSKTIYTAPLDMLQVTQAKKSQEIASDVDYKHVLHNYSYPPDSINLDLAKKAYALQSDVEYKADYNSWMKGCGWVPFGSLEMEKAKRASDILNEKKYRQHPDTLKFTSIEDAPITVQSKINQAQRSDIAYKAKGEEILHKYNLPADLPQFIQAKVNAYNISENMYKADLKDLSKKGYDLRIDAIPIKAAKAARQAASDIHYKKDYEKAKGKMVGFQSLQDDPKLVHYMNVAKIQSDREYKKDYEKTKTKYNTPHDMFDVVAAKKAQDVISNTNYKHSLHHYTYLPDAMDLELSKNMMHIQSDNAYKEDYNTWMKGIGWIPIGSLDQEKVKKAGDALSEKKYRQHPDTLKFTSIVDSPVMVQAKQNTQQVSDILYKAKGEDVKHKYTLNPDLPQFLQAKCNAYNISDVCYKRDWHDLIAKGNNVLADAIPITAAKSSRNIASDYKYKEAYEKSKGKHVGFRSLQDDPKLVHYMNVAKLQSDREYKKNYENTKTSYHTPGDMVSITAAKMAQDVATNVNYKQPLHHYTYLPDALSLEHTRNANQIQSDNVYKDEYNSFFKGIGWIPIGSLEVEKAKKAGDALNERKYRQHPDTIKFTSVPDSMGMVLAQQNTKQLSDLNYKVEGEKLKHKYTMDPELPQFIQAKVNAINMSDAHYKADWKKTLAKGYDLRPDAIPIVAAKSSRNIASDFKYKEAYEKARGKQIGFLSLQDDPKLVHYMNVAKIQSDREYKKGYEASKTRYHTPLDMFSVTAAKKSQEVATNTNYRQPYHNYTLLPDALNVEHSRNAMQIQSDNLYKSDFTNWMKGIGWVPIDSLEVEKAKKAGEILSERKYRQHPEKLKFTYSMDTMEQALNKSNKLTMDKRLYTEKWNKDKTTIHVMPDTPDILLSRVNQITMSDKLYKAGWEEEKKKGYDLKPDAISIQAAKASRDIASDYKYKQAYEQAKGKHIGFRSLEDDPKLVHFMQVAKMQSDREYKKGYEKSKTSFHTPVDMFSVVAAKKSQEVATNANYRNIIHTYNMLPDAMSFELAKNMMQIQSDNQYKADYADFMKGIGWLPLGSLEAEKNKKAMEIISEKKYRQHPDTLKYSTLMDSMNMVLAQNNAKIMNEHLYKQAWEADKTKVHIMPDIPEIVLAKANAINMSDKLYKLSLEESKKKGYDLRTDAIPIQAAKASRDIASDYKYKHNYEKEKGKMVGFRSLEDDPKLVHSMQVAKMQSDREYKKNYEKTKTSYHTPADMLSVTAAKDAQANITNTNYKRLIHKYILLPDAMNIELTRNMNHIQSDNQYKQDYNEWYKGLGWSPAGSLEVEKAKKATEYASDQKYRQHPSSFQFKKLTDSMDMVLAKQNAHTMNKHLYTVDWNKDKTKIHVMPDTPDILQAKQNQTLYSQKFYRLGWEEALKKGYDLPVDAISVQLAKTSRDIASDFKYKQGYRKQLGHHIGFLSVQDDPKLVLSMNVAKMQSEREYKKDFEKWKTKYTSPVDMLGVVLAKKCQALVSDVDYRNYLHQWTCLPDQNDVIQAKKVYELQSENMYKSDLEWLRGIGWSPLGSLEAEKNKRASEIISEKKYRQPPDRNKFTSIPDAMDIVLAKTNAKNRSDRLYREAWDKDKTQIHIMPDTPDIVLAKANLINTSDKIYRMGYEELKKKGYDLPVDAIPIKAAKASREIASEYKYKEGFRKQLGHHIGARNIKDDPKMMWSMHVAKIQSDREYKKDFEKWKTKYSSPVDMLGVVLAKKCQTLVSDADYRNYLHQWTCLPDQNDVIHARQAYDLQSDNLYKADLQWLKGIGWIPSGSLEDEKNKRATQILSEHVYRQHPDKFKFSSLMDSMPMVLAKNNAITMNHHLYTEAWNKDKTSIHIMPDTPEVILAKQNKINYSEKLYKLGLEEAKRKGYDMRLDAIPIKTAKASRDIASDFKYKEGYRKQLGHHIGARAIHDDPKMMWSMHVAKIQSDREYKKDFEKWKTKYSSPVDMLGVVLAKKCQTLVSDVDYRNYLHQWTCLPDQNDVIHARQAYDLQSDNMYKSDLQWLRGIGWVPIGSLDVEKCKRATEILSDKIYRQPPDKFKFTSVTDSLEQVLAKNNAITMNKRLYTEAWDKDKTQIHIMPDTPEIMLARMNKVNYSESLYKLANEEAKKKGYDLRSDAIPIVAAKASRDIASDYKYKDGYRKQLGHHIGARNIEDDPKMVWSMHVAKIQSDREYKKDFEKWKTKYSSPVDMLGVVLAKKCQTLVSDVDYRNYLHQWTCLPDQNDVIHARQAYDLQSDNVYKSDLQWMRGIGWVPIGSLDVVKCKRAAEILSDNIYRQPPDKFKFTSVTDSLEQVLAKSNALNMNKRLYTEAWDKDKTQIHVMPDTPEIMLARQNRVNYSESLYKLANEEAKKKGYDLRVDAIPIVAAKASRDIASDYKYKDGYRKQLGHHIGARNIEDDPKMMWSMHVAKIQSDREYKKDFEKWKTKYSSPVDMLGVVLAKKCQTLVSDVDYRNYLHQWTCLPDQNDVIHARQAYDLQSDNVYKSDLQWLRGIGWVPIGSLDVVKCKRAAEILSDNIYRQPPDKFKFTSVTDSLEQVLAKNNALNMNKRLYTEAWEKDKTQIHIMPDTPEIMLARQNKINYSESLYRQAMEEAKKEGYDLRSDAIPIVAAKASRDIASDYKYKEAYRKQLGHHIGARAIHDDPKMMWSLHIAKVQSDREYKKEFEKYKTRYSSPVDMLGIVLAKKCQTLVSDVDYKHPLHEWTCLPDQNDVIQARKAYDLQSDNLYKADLEWMKGIGWVPIGSLEVVKAKRATEILSDNIYRQRPDTLKFTSITDSLEQVLAKNNAINMNKRLYTEAWDNDKKTIHVMPDTPEIMLAKLNRINYSDKLYKVALEEAKKQGYDLRLDAIPIRAAKASREIASDYKYKEGYRKQLGHHIGARNIKDDPKMMWSIHVAKIQSDREYKKDFEKWKTKYSSPVDMLGVVLAKKCQILVSDIDYKHPLHEWTCLPDQNDVIQARKAYDLQSDAVYKADLEWLRGIGWVPIGSVEVEKVKRAGEILSDRKYRQPADQLKFTCITDTPEIVLAKNNAITMSKHLYTEAWDADKASIHVMPDTPEILLAKSNSANISQKLYTKGWDESKMKDYDLREDAISIKSAKASRDIASDYKYKEAYEKQKGHHIGAQSVEDDPRIMCAMHAGKIHSDREYKKEFQKWKTKFSSPVDMLGLVLAKKCQTLVSDVDYRNYLHNWTCLPDQNDIIQAKKAYELQSDSVYKADLEWLRGIGWMPDGSVEMTRVKGAQDLVNERLYRTRPEALKFTSIVDTPEVVLAKNNSLQMSERLYQEAWNKDKTNISIPLDTPAMLQAQINALQISNKLYQKDWDEAKQKGYDLRADAIEIKHAKASREIASEYKYKEGYRKQLGHHVGFRSLQDDPKLVWSIHAAKIQSDREYKKAYEKSKGIYNTPLDMMSIVQAKKCQVLVSDIDYRNYLHQWTCLPDQNDVIQAKKAYELQSDAIYKADLEWLRGIGWMPEGSPEVLRVKNAQEILCDSVYRTPVVKLKYTSIVDTPEVVLAKSNAENISIPKYREVWDKDKTSIHIMPDTPEINLARANALNVSNKLYREGWDEVKMSCDVRLDAIPIQAAKASREIASDYKYKLDHEKQKGHYVGTLTARDDNKIRWALIAGKIQNEREYRLQWAKWKTKFQSPVDMLSILHSKKCQTLVSDIDYRNYLHEWTCMPDQNDVIQAKKAYELQSDAVYKADLEWLRGIGWMPNDSVSVNHAKHAADIFSEKKYRTKIESLNFTPVDDRVDYVTAKQSTEIRDDIKYRKDWNAIKSKYTLTETPLLHTAQEAARILDQYLYKEGWEKQKATGYILPPDAVPFVHAHHSSDVQSELKYKAEHVKQKGHYVGVPTMRDDPKLVWFEHAGQIQNDRLYKENYHKSKAKINIPADMVSVVAAKEGQNLVSDIDYRHYLHQWTCHPDQNDVIQAKIAYDLQSDNVYKADLEWLRGIGWIPLDSVDHVRVTKNQEMVNQIKYKKDALANYPNFTSVEDPPEIVLAKINSVNQSDVKYKETFNKAKGKYIFSPDTPYISHSKDMGKLYSTILYKGAWEGTKAYGYTLDERYIPIVGAKHADLVNSELKYKETYEKQKGHYLAGKEISEFPGVVHCLDFQQMRSALNYRRDYEDTKANVHIPNDMMNHVLAKRCQYILSDLEYRHYFHQWTSLPEEPNVIRARNAQEILSDNVYKDDLNWLKGIGCYVWDTPQILHAKKSYDLQSQLQYTAASKDNLQNYNLVTDTPVYVTALQSGINASEVKYKENYHQIKDKYTTVLETADYDRTKNLKSLYSSNIYKEAWDKVKATSYNLPTSTLSLTHAKNQKHLASHIKYREEYEKFKALYTLPKSVEDDPNTARCLRVGKLNIDRLYRSVYEKNKMKIHIVPDMVEMVTAKDSQKKVSEIDYRLHLHEWICHPDLQVNSHVRKVTDQISDIVYKDDLTWLKGIGCYVWDTPEILHAKHAYDLRNDIKYKAHVQKTRNDYKLVTDTPVYVQAVKSGKQLSDAVYHYDYVHSVRGKVAPTTKTVDLDRALHAYKLQSENLYKKGLRFLPTGYRLPVDTPHFNHTKDTRYMSSYFKYKEAYEHIKANGYTLGPKDVPFVHVRRVNNVTSERLYRELYHKLKDKIHTTPDTPEIRQVKKTQEAVSELIYKSDFFKMQGHMISLPYTPQVLHCRYVGDITSDIKYKEDLQILKGLGCFLYDTPDMVRSRHLRKLWSNYLYTDNARKMRDKYKVVLDTPEYRKVQELKTHLSELVYRAAGKKQKSIFTSVPDTPDLLRAKQGQKLQSQYLYVELATKERPHHHAGNQTTALQHAKDVKDMVSEKKYKIQYEKMKDKYTPVADTPILIRAKRAYWNASDLRYKETFQKTKGKYHTVKDALDIVYHRKVTDDISKVKYKENYMSQLGIWSSIPDRPEHFHHRAVTDAISDVKYKEDLTWLKGIGCYAYDTPDLTLAEQNKTLYSKYKYKEVFERTKSNFKYVADCPINRHFKYATQLMNEKKYRADYEQRKDKYHLVVDEPRHLVAKTAGDQISQIKYRKKYEKSKDKFTSVVDTPEHLRTTKVNKQISDILYKLEYNKARPRGYTTIHDTPMLLHVRKVKDEVSDLKYKEVYQRNKSNCTIKPDAVHIKAAKDAYKVNTNLDYKKQYEANKAYWKWTPDRPDFIQAAKSSLQQSDFEYKLDREFLKGCKLSVTDDKDMVLALRNSLIESDLKYKEKHVKERGTCHAVPDTPQILLAKTVSNLVSENKYKDHVKKHLAQGSYTTLPETRDTVHVKAVTKHVSDTNYKKKFVKEKGKSNYSIMQEPPEVKHAMEVAKKQSDVAYKKDAKENLHYTTVADRPDIKKATQAAKQASEVEYRAKHRKEGSHGLSMLGRPDIEMAKKAAKLSSQVKYRENFDKEKGKTPKYNPKDSQLYKTMKDANNLASEVKYKADLKKLHKPVTDMKESLIMHHVLNTSQLASSYQYKKNYEKSKGHYHTIPDNLEQLHLKEATELQSIVKYKEKYEKERGKPMLDFETPTYITAKESQQMQSGKEYRKDYEESIKGRNLTGLEVTPALLHVRHATKIASEKEYRKDLEESIRGRGLTEMEDTPDMLRAKNATQILNEKEYKRDLELEVKGRGLNAMANETPDFMRAKNATDIASQIKYKQSAEMEKANFTSVVDTPEIIHAQQVKNLSSQKKYKEDAEKSMSYYETVLDTPEMQRVRENQKNFSLLQYQCDLKNSKGKITVVQDTPEILRVKENQKNFSSVLYKEDVSPGTAIGKTPEMLRVKQTQDHISSVKYKEAIGQGTPIPDLPEVKRVKETQKHISSVMYKENLGTGIPTTVTPEIERVKRNQENFSSVLYKESLGKGTPTAITPEMERVKRNQENFSSVLYKENMGKGTPLPITPEMERVKHNQENISSVLYKESVGKATPTPVTPEMQRVKRNQENISSVLYKENMGKATPTPFTPEMERVKRNQENFSSVLYKENMRKATPTPVTPEMERAKRNQENISSVLYSDSFRKQIQGKAAYVLDTPEMRRVRETQRHISTVKYHEDFEKHKGCFTPVVTDPITERVKKNTQDFSDINYRGIQRKVVEMEQKRNDQDQDTITGLRVWRTNPGSVFDYDPAEDNIQSRSLHMINVQAQRRSREQSRSASALSISGGEDKSEHSADQRFSTYSDGGAFFSATSTGYKHVKTTELPQQRSSSVATQQTTLSSIPSHPSTAGKIFRAMYDYMAADADEVSFKDGDAIVNAQAIDEGWMYGTVQRTGRTGMLPANYVEAV", "length": 7150, "header": "tr|A0A9J7H460-1|A0A9J7H460_CRIGR Isoform 1 of Nebulin isoform X4 OS=Cricetulus griseus OX=10029 GN=Neb PE=4 SV=1 CANONICAL=A0A9J7H460-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H3K4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H460/entry#A0A9J7H3K4-1", "sequence": { "sequence": "MADEEEYEEVIEYYTEETVYEEVPGETITEVYETTTTRTSDYGQSESSTPALVQPQPAKPMERKKVIRKKVDSSKFMTPYIQHSQKMQDLFSPNKYKENYEKAKGQPYAITSDTPELRRIKKVQDQLSEVKYRMDGDVAKTICHVDEKAKDIEHAKKVSQQVSKVLYKQNWEDTKDKYLLPPDAPELVQAIKNTAMFSKKLYTEDWEADKGLFYPYNDSPELRRVAQAQKALSDIAYKKGLTEQQTQFTSLPDPPDVEFAKKVTNQVSKQKYKEDYEKKVKGKWSETPCFEIATARMNADNLSTRKYQEDFENLKDQIYFMQTETPEYKMNKQAGIAASKVKYKEDYEKNKGKADYNVLPASENPLLRQLKAAGNVLSDKLYKENYEKTKAKSINYCETPKFQLDTILHNFSSDTKYKDSYLKNILGHYVGSFEDPYHTHCMKVTAQNSDKNYRAEYEEDRGKGFFPQTITQEYEAIKKLDQCKDHTYKVHPDKTKFTQVTDSPVLLQAQVNSKQLSDLNYKAKHESEKFKCHLPPDAPAFIQHRVNAYNLSDNVYKQDWEKSKAKKFDIKVDAIPLLAAKANSKNASDVMYKKDYEKSKGKMIGALSINDDPKMLHSLKTAKNQSDRLYRENYEKTKAKSMNYCETPKYQLDTLLKNFSEAKYKDSYVKNILGHYVGSFEDPYHTHCMKVSAQNSDKSYKAEYEEDKGRCYFPQTITQEYEAIKKLDQCKDHTYKVHPDKTKFTAVTDTPVLLQAQLNTKQLSDLNYKAKHEGEKFKCNVPADAPEFIQHRVNAYNLSDNVYKQDWEKSKAKKFDIKMDAIPLLAAKANSKNASDVMYKKDYEKSKGKMIGALSINDDPKMLHSLKTAKNQSDREYRKDYEKSKTIYTAPLDMLQVTQAKKSQEIASDVDYKHVLHNYSYPPDSINLDLAKKAYALQSDVEYKADYNSWMKGCGWVPFGSLEMEKAKRASDILNEKKYRQHPDTLKFTSIEDAPITVQSKINQAQRSDIAYKAKGEEILHKYNLPADLPQFIQAKVNAYNISENMYKADLKDLSKKGYDLRIDAIPIKAAKAARQAASDIHYKKDYEKAKGKMVGFQSLQDDPKLVHYMNVAKIQSDREYKKDYEKTKTKYNTPHDMFDVVAAKKAQDVISNTNYKHSLHHYTYLPDAMDLELSKNMMHIQSDNAYKEDYNTWMKGIGWIPIGSLDQEKVKKAGDALSEKKYRQHPDTLKFTSIVDSPVMVQAKQNTQQVSDILYKAKGEDVKHKYTLNPDLPQFLQAKCNAYNISDVCYKRDWHDLIAKGNNVLADAIPITAAKSSRNIASDYKYKEAYEKSKGKHVGFRSLQDDPKLVHYMNVAKLQSDREYKKNYENTKTSYHTPGDMVSITAAKMAQDVATNVNYKQPLHHYTYLPDALSLEHTRNANQIQSDNVYKDEYNSFFKGIGWIPIGSLEVEKAKKAGDALNERKYRQHPDTIKFTSVPDSMGMVLAQQNTKQLSDLNYKVEGEKLKHKYTMDPELPQFIQAKVNAINMSDAHYKADWKKTLAKGYDLRPDAIPIVAAKSSRNIASDFKYKEAYEKARGKQIGFLSLQDDPKLVHYMNVAKIQSDREYKKGYEASKTRYHTPLDMFSVTAAKKSQEVATNTNYRQPYHNYTLLPDALNVEHSRNAMQIQSDNLYKSDFTNWMKGIGWVPIDSLEVEKAKKAGEILSERKYRQHPEKLKFTYSMDTMEQALNKSNKLTMDKRLYTEKWNKDKTTIHVMPDTPDILLSRVNQITMSDKLYKAGWEEEKKKGYDLKPDAISIQAAKASRDIASDYKYKQAYEQAKGKHIGFRSLEDDPKLVHFMQVAKMQSDREYKKGYEKSKTSFHTPVDMFSVVAAKKSQEVATNANYRNIIHTYNMLPDAMSFELAKNMMQIQSDNQYKADYADFMKGIGWLPLGSLEAEKNKKAMEIISEKKYRQHPDTLKYSTLMDSMNMVLAQNNAKIMNEHLYKQAWEADKTKVHIMPDIPEIVLAKANAINMSDKLYKLSLEESKKKGYDLRTDAIPIQAAKASRDIASDYKYKHNYEKEKGKMVGFRSLEDDPKLVHSMQVAKMQSDREYKKNYEKTKTSYHTPADMLSVTAAKDAQANITNTNYKRLIHKYILLPDAMNIELTRNMNHIQSDNQYKQDYNEWYKGLGWSPAGSLEVEKAKKATEYASDQKYRQHPSSFQFKKLTDSMDMVLAKQNAHTMNKHLYTVDWNKDKTKIHVMPDTPDILQAKQNQTLYSQKFYRLGWEEALKKGYDLPVDAISVQLAKTSRDIASDFKYKQGYRKQLGHHIGFLSVQDDPKLVLSMNVAKMQSEREYKKDFEKWKTKYTSPVDMLGVVLAKKCQALVSDVDYRNYLHQWTCLPDQNDVIQAKKVYELQSENMYKSDLEWLRGIGWSPLGSLEAEKNKRASEIISEKKYRQPPDRNKFTSIPDAMDIVLAKTNAKNRSDRLYREAWDKDKTQIHIMPDTPDIVLAKANLINTSDKIYRMGYEELKKKGYDLPVDAIPIKAAKASREIASEYKYKEGFRKQLGHHIGARNIKDDPKMMWSMHVAKIQSDREYKKDFEKWKTKYSSPVDMLGVVLAKKCQTLVSDADYRNYLHQWTCLPDQNDVIHARQAYDLQSDNLYKADLQWLKGIGWIPSGSLEDEKNKRATQILSEHVYRQHPDKFKFSSLMDSMPMVLAKNNAITMNHHLYTEAWNKDKTSIHIMPDTPEVILAKQNKINYSEKLYKLGLEEAKRKGYDMRLDAIPIKTAKASRDIASDFKYKEGYRKQLGHHIGARAIHDDPKMMWSMHVAKIQSDREYKKDFEKWKTKYSSPVDMLGVVLAKKCQTLVSDVDYRNYLHQWTCLPDQNDVIHARQAYDLQSDNMYKSDLQWLRGIGWVPIGSLDVEKCKRATEILSDKIYRQPPDKFKFTSVTDSLEQVLAKNNAITMNKRLYTEAWDKDKTQIHIMPDTPEIMLARMNKVNYSESLYKLANEEAKKKGYDLRSDAIPIVAAKASRDIASDYKYKDGYRKQLGHHIGARNIEDDPKMMWSMHVAKIQSDREYKKDFEKWKTKYSSPVDMLGVVLAKKCQTLVSDVDYRNYLHQWTCLPDQNDVIHARQAYDLQSDNVYKSDLQWLRGIGWVPIGSLDVVKCKRAAEILSDNIYRQPPDKFKFTSVTDSLEQVLAKNNALNMNKRLYTEAWEKDKTQIHIMPDTPEIMLARQNKINYSESLYRQAMEEAKKEGYDLRSDAIPIVAAKASRDIASDYKYKEAYRKQLGHHIGARAIHDDPKMMWSLHIAKVQSDREYKKEFEKYKTRYSSPVDMLGIVLAKKCQTLVSDVDYKHPLHEWTCLPDQNDVIQARKAYDLQSDNLYKADLEWMKGIGWVPIGSLEVVKAKRATEILSDNIYRQRPDTLKFTSITDSLEQVLAKNNAINMNKRLYTEAWDNDKKTIHVMPDTPEIMLAKLNRINYSDKLYKVALEEAKKQGYDLRLDAIPIRAAKASREIASDYKYKEGYRKQLGHHIGARNIKDDPKMMWSIHVAKIQSDREYKKDFEKWKTKYSSPVDMLGVVLAKKCQILVSDIDYKHPLHEWTCLPDQNDVIQARKAYDLQSDAVYKADLEWLRGIGWVPIGSVEVEKVKRAGEILSDRKYRQPADQLKFTCITDTPEIVLAKNNAITMSKHLYTEAWDADKASIHVMPDTPEILLAKSNSANISQKLYTKGWDESKMKDYDLREDAISIKSAKASRDIASDYKYKEAYEKQKGHHIGAQSVEDDPRIMCAMHAGKIHSDREYKKEFQKWKTKFSSPVDMLGLVLAKKCQTLVSDVDYRNYLHNWTCLPDQNDIIQAKKAYELQSDAIYKADLEWLRGIGWMPEGSPEVLRVKNAQEILCDSVYRTPVVKLKYTSIVDTPEVVLAKSNAENISIPKYREVWDKDKTSIHIMPDTPEINLARANALNVSNKLYREGWDEVKMSCDVRLDAIPIQAAKASREIASDYKYKLDHEKQKGHYVGTLTARDDNKIRWALIAGKIQNEREYRLQWAKWKTKFQSPVDMLSILHSKKCQTLVSDIDYRNYLHEWTCMPDQNDVIQAKKAYELQSDAVYKADLEWLRGIGWMPNDSVSVNHAKHAADIFSEKKYRTKIESLNFTPVDDRVDYVTAKQSTEIRDDIKYRKDWNAIKSKYTLTETPLLHTAQEAARILDQYLYKEGWEKQKATGYILPPDAVPFVHAHHSSDVQSELKYKAEHVKQKGHYVGVPTMRDDPKLVWFEHAGQIQNDRLYKENYHKSKAKINIPADMVSVVAAKEGQNLVSDIDYRHYLHQWTCHPDQNDVIQAKIAYDLQSDNVYKADLEWLRGIGWIPLDSVDHVRVTKNQEMVNQIKYKKDALANYPNFTSVEDPPEIVLAKINSVNQSDVKYKETFNKAKGKYIFSPDTPYISHSKDMGKLYSTILYKGAWEGTKAYGYTLDERYIPIVGAKHADLVNSELKYKETYEKQKGHYLAGKEISEFPGVVHCLDFQQMRSALNYRRDYEDTKANVHIPNDMMNHVLAKRCQYILSDLEYRHYFHQWTSLPEEPNVIRARNAQEILSDNVYKDDLNWLKGIGCYVWDTPQILHAKKSYDLQSQLQYTAASKDNLQNYNLVTDTPVYVTALQSGINASEVKYKENYHQIKDKYTTVLETADYDRTKNLKSLYSSNIYKEAWDKVKATSYNLPTSTLSLTHAKNQKHLASHIKYREEYEKFKALYTLPKSVEDDPNTARCLRVGKLNIDRLYRSVYEKNKMKIHIVPDMVEMVTAKDSQKKVSEIDYRLHLHEWICHPDLQVNSHVRKVTDQISDIVYKDDLTWLKGIGCYVWDTPEILHAKHAYDLRNDIKYKAHVQKTRNDYKLVTDTPVYVQAVKSGKQLSDAVYHYDYVHSVRGKVAPTTKTVDLDRALHAYKLQSENLYKKGLRFLPTGYRLPVDTPHFNHTKDTRYMSSYFKYKEAYEHIKANGYTLGPKDVPFVHVRRVNNVTSERLYRELYHKLKDKIHTTPDTPEIRQVKKTQEAVSELIYKSDFFKMQGHMISLPYTPQVLHCRYVGDITSDIKYKEDLQILKGLGCFLYDTPDMVRSRHLRKLWSNYLYTDNARKMRDKYKVVLDTPEYRKVQELKTHLSELVYRAAGKKQKSIFTSVPDTPDLLRAKQGQKLQSQYLYVELATKERPHHHAGNQTTALQHAKDVKDMVSEKKYKIQYEKMKDKYTPVADTPILIRAKRAYWNASDLRYKETFQKTKGKYHTVKDALDIVYHRKVTDDISKVKYKENYMSQLGIWSSIPDRPEHFHHRAVTDAISDVKYKEDLTWLKGIGCYAYDTPDLTLAEQNKTLYSKYKYKEVFERTKSNFKYVADCPINRHFKYATQLMNEKKYRADYEQRKDKYHLVVDEPRHLVAKTAGDQISQIKYRKKYEKSKDKFTSVVDTPEHLRTTKVNKQISDILYKLEYNKARPRGYTTIHDTPMLLHVRKVKDEVSDLKYKEVYQRNKSNCTIKPDAVHIKAAKDAYKVNTNLDYKKQYEANKAYWKWTPDRPDFIQAAKSSLQQSDFEYKLDREFLKGCKLSVTDDKDMVLALRNSLIESDLKYKEKHVKERGTCHAVPDTPQILLAKTVSNLVSENKYKDHVKKHLAQGSYTTLPETRDTVHVKAVTKHVSDTNYKKKFVKEKGKSNYSIMQEPPEVKHAMEVAKKQSDVAYKKDAKENLHYTTVADRPDIKKATQAAKQASEVEYRAKHRKEGSHGLSMLGRPDIEMAKKAAKLSSQVKYRENFDKEKGKTPKYNPKDSQLYKTMKDANNLASEVKYKADLKKLHKPVTDMKESLIMHHVLNTSQLASSYQYKKNYEKSKGHYHTIPDNLEQLHLKEATELQSIVKYKEKYEKERGKPMLDFETPTYITAKESQQMQSGKEYRKDYEESIKGRNLTGLEVTPALLHVRHATKIASEKEYRKDLEESIRGRGLTEMEDTPDMLRAKNATQILNEKEYKRDLELEVKGRGLNAMANETPDFMRAKNATDIASQIKYKQSAEMEKANFTSVVDTPEIIHAQQVKNLSSQKKYKEDAEKSMSYYETVLDTPEMQRVRENQKNFSLLQYQCDLKNSKGKITVVQDTPEILRVKENQKNFSSVLYKEDVSPGTAIGKTPEMLRVKQTQDHISSVKYKEAIGQGTPIPDLPEVKRVKETQKHISSVMYKENLGTGIPTTVTPEIERVKRNQENFSSVLYKENLGKGIPIPITPEMERVKHNQENFSSVLYKENMGKGTPLPITPEMERVKHNQENISSVLYKESVGKATPTPVTPEMQRVKRNQENISSVLYKENMGKATPTPFTPEMERVKRNQENFSSVLYKENMRKATPTPVTPEMERAKRNQENISSVLYSDSFRKQIQGKAAYVLDTPEMRRVRETQRHISTVKYHEDFEKHKGCFTPVVTDPITERVKKNTQDFSDINYRGIQRKVVEMEQKRNDQDQDTITGLRVWRTNPGSVFDYDPAEDNIQSRSLHMINVQAQRRSREQSRSASALSISGGEDKSEHSADQRFSTYSDGGAFFSATSTGYKHVKTTELPQQRSSSVATQQTTLSSIPSHPSTAGKIFRAMYDYMAADADEVSFKDGDAIVNAQAIDEGWMYGTVQRTGRTGMLPANYVEAV", "length": 6664, "header": "tr|A0A9J7H3K4-1|A0A9J7H460_CRIGR Computationally mapped isoform of Nebulin isoform X4 OS=Cricetulus griseus OX=10029 GN=Neb PE=4 SV=1 CANONICAL=A0A9J7H460-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H460-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H460/entry#A0A9J7H460-1", "sequence": { "sequence": "MADEEEYEEVIEYYTEETVYEEVPGETITEVYETTTTRTSDYGQSESSTPALVQPQPAKPMERKKVIRKKVDSSKFMTPYIQHSQKMQDLFSPNKYKENYEKAKGQPYAITSDTPELRRIKKVQDQLSEVKYRMDGDVAKTICHVDEKAKDIEHAKKVSQQVSKVLYKQNWEDTKDKYLLPPDAPELVQAIKNTAMFSKKLYTEDWEADKGLFYPYNDSPELRRVAQAQKALSDIAYKKGLTEQQTQFTSLPDPPDVEFAKKVTNQVSKQKYKEDYEKKVKGKWSETPCFEIATARMNADNLSTRKYQEDFENLKDQIYFMQTETPEYKMNKQAGIAASKVKYKEDYEKNKGKADYNVLPASENPLLRQLKAAGNVLSDKLYKENYEKTKAKSINYCETPKFQLDTILHNFSSDTKYKDSYLKNILGHYVGSFEDPYHTHCMKVTAQNSDKNYRAEYEEDRGKGFFPQTITQEYEAIKKLDQCKDHTYKVHPDKTKFTQVTDSPVLLQAQVNSKQLSDLNYKAKHESEKFKCHLPPDAPAFIQHRVNAYNLSDNVYKQDWEKSKAKKFDIKVDAIPLLAAKANSKNASDVMYKKDYEKSKGKMIGALSINDDPKMLHSLKTAKNQSDRLYRENYEKTKAKSMNYCETPKYQLDTLLKNFSEAKYKDSYVKNILGHYVGSFEDPYHTHCMKVSAQNSDKSYKAEYEEDKGRCYFPQTITQEYEAIKKLDQCKDHTYKVHPDKTKFTAVTDTPVLLQAQLNTKQLSDLNYKAKHEGEKFKCNVPADAPEFIQHRVNAYNLSDNVYKQDWEKSKAKKFDIKMDAIPLLAAKANSKNASDVMYKKDYEKSKGKMIGALSINDDPKMLHSLKTAKNQSDREYRKDYEKSKTIYTAPLDMLQVTQAKKSQEIASDVDYKHVLHNYSYPPDSINLDLAKKAYALQSDVEYKADYNSWMKGCGWVPFGSLEMEKAKRASDILNEKKYRQHPDTLKFTSIEDAPITVQSKINQAQRSDIAYKAKGEEILHKYNLPADLPQFIQAKVNAYNISENMYKADLKDLSKKGYDLRIDAIPIKAAKAARQAASDIHYKKDYEKAKGKMVGFQSLQDDPKLVHYMNVAKIQSDREYKKDYEKTKTKYNTPHDMFDVVAAKKAQDVISNTNYKHSLHHYTYLPDAMDLELSKNMMHIQSDNAYKEDYNTWMKGIGWIPIGSLDQEKVKKAGDALSEKKYRQHPDTLKFTSIVDSPVMVQAKQNTQQVSDILYKAKGEDVKHKYTLNPDLPQFLQAKCNAYNISDVCYKRDWHDLIAKGNNVLADAIPITAAKSSRNIASDYKYKEAYEKSKGKHVGFRSLQDDPKLVHYMNVAKLQSDREYKKNYENTKTSYHTPGDMVSITAAKMAQDVATNVNYKQPLHHYTYLPDALSLEHTRNANQIQSDNVYKDEYNSFFKGIGWIPIGSLEVEKAKKAGDALNERKYRQHPDTIKFTSVPDSMGMVLAQQNTKQLSDLNYKVEGEKLKHKYTMDPELPQFIQAKVNAINMSDAHYKADWKKTLAKGYDLRPDAIPIVAAKSSRNIASDFKYKEAYEKARGKQIGFLSLQDDPKLVHYMNVAKIQSDREYKKGYEASKTRYHTPLDMFSVTAAKKSQEVATNTNYRQPYHNYTLLPDALNVEHSRNAMQIQSDNLYKSDFTNWMKGIGWVPIDSLEVEKAKKAGEILSERKYRQHPEKLKFTYSMDTMEQALNKSNKLTMDKRLYTEKWNKDKTTIHVMPDTPDILLSRVNQITMSDKLYKAGWEEEKKKGYDLKPDAISIQAAKASRDIASDYKYKQAYEQAKGKHIGFRSLEDDPKLVHFMQVAKMQSDREYKKGYEKSKTSFHTPVDMFSVVAAKKSQEVATNANYRNIIHTYNMLPDAMSFELAKNMMQIQSDNQYKADYADFMKGIGWLPLGSLEAEKNKKAMEIISEKKYRQHPDTLKYSTLMDSMNMVLAQNNAKIMNEHLYKQAWEADKTKVHIMPDIPEIVLAKANAINMSDKLYKLSLEESKKKGYDLRTDAIPIQAAKASRDIASDYKYKHNYEKEKGKMVGFRSLEDDPKLVHSMQVAKMQSDREYKKNYEKTKTSYHTPADMLSVTAAKDAQANITNTNYKRLIHKYILLPDAMNIELTRNMNHIQSDNQYKQDYNEWYKGLGWSPAGSLEVEKAKKATEYASDQKYRQHPSSFQFKKLTDSMDMVLAKQNAHTMNKHLYTVDWNKDKTKIHVMPDTPDILQAKQNQTLYSQKFYRLGWEEALKKGYDLPVDAISVQLAKTSRDIASDFKYKQGYRKQLGHHIGFLSVQDDPKLVLSMNVAKMQSEREYKKDFEKWKTKYTSPVDMLGVVLAKKCQALVSDVDYRNYLHQWTCLPDQNDVIQAKKVYELQSENMYKSDLEWLRGIGWSPLGSLEAEKNKRASEIISEKKYRQPPDRNKFTSIPDAMDIVLAKTNAKNRSDRLYREAWDKDKTQIHIMPDTPDIVLAKANLINTSDKIYRMGYEELKKKGYDLPVDAIPIKAAKASREIASEYKYKEGFRKQLGHHIGARNIKDDPKMMWSMHVAKIQSDREYKKDFEKWKTKYSSPVDMLGVVLAKKCQTLVSDADYRNYLHQWTCLPDQNDVIHARQAYDLQSDNLYKADLQWLKGIGWIPSGSLEDEKNKRATQILSEHVYRQHPDKFKFSSLMDSMPMVLAKNNAITMNHHLYTEAWNKDKTSIHIMPDTPEVILAKQNKINYSEKLYKLGLEEAKRKGYDMRLDAIPIKTAKASRDIASDFKYKEGYRKQLGHHIGARAIHDDPKMMWSMHVAKIQSDREYKKDFEKWKTKYSSPVDMLGVVLAKKCQTLVSDVDYRNYLHQWTCLPDQNDVIHARQAYDLQSDNMYKSDLQWLRGIGWVPIGSLDVEKCKRATEILSDKIYRQPPDKFKFTSVTDSLEQVLAKNNAITMNKRLYTEAWDKDKTQIHIMPDTPEIMLARMNKVNYSESLYKLANEEAKKKGYDLRSDAIPIVAAKASRDIASDYKYKDGYRKQLGHHIGARNIEDDPKMVWSMHVAKIQSDREYKKDFEKWKTKYSSPVDMLGVVLAKKCQTLVSDVDYRNYLHQWTCLPDQNDVIHARQAYDLQSDNVYKSDLQWMRGIGWVPIGSLDVVKCKRAAEILSDNIYRQPPDKFKFTSVTDSLEQVLAKSNALNMNKRLYTEAWDKDKTQIHVMPDTPEIMLARQNRVNYSESLYKLANEEAKKKGYDLRVDAIPIVAAKASRDIASDYKYKDGYRKQLGHHIGARNIEDDPKMMWSMHVAKIQSDREYKKDFEKWKTKYSSPVDMLGVVLAKKCQTLVSDVDYRNYLHQWTCLPDQNDVIHARQAYDLQSDNVYKSDLQWLRGIGWVPIGSLDVVKCKRAAEILSDNIYRQPPDKFKFTSVTDSLEQVLAKNNALNMNKRLYTEAWEKDKTQIHIMPDTPEIMLARQNKINYSESLYRQAMEEAKKEGYDLRSDAIPIVAAKASRDIASDYKYKEAYRKQLGHHIGARAIHDDPKMMWSLHIAKVQSDREYKKEFEKYKTRYSSPVDMLGIVLAKKCQTLVSDVDYKHPLHEWTCLPDQNDVIQARKAYDLQSDNLYKADLEWMKGIGWVPIGSLEVVKAKRATEILSDNIYRQRPDTLKFTSITDSLEQVLAKNNAINMNKRLYTEAWDNDKKTIHVMPDTPEIMLAKLNRINYSDKLYKVALEEAKKQGYDLRLDAIPIRAAKASREIASDYKYKEGYRKQLGHHIGARNIKDDPKMMWSIHVAKIQSDREYKKDFEKWKTKYSSPVDMLGVVLAKKCQILVSDIDYKHPLHEWTCLPDQNDVIQARKAYDLQSDAVYKADLEWLRGIGWVPIGSVEVEKVKRAGEILSDRKYRQPADQLKFTCITDTPEIVLAKNNAITMSKHLYTEAWDADKASIHVMPDTPEILLAKSNSANISQKLYTKGWDESKMKDYDLREDAISIKSAKASRDIASDYKYKEAYEKQKGHHIGAQSVEDDPRIMCAMHAGKIHSDREYKKEFQKWKTKFSSPVDMLGLVLAKKCQTLVSDVDYRNYLHNWTCLPDQNDIIQAKKAYELQSDSVYKADLEWLRGIGWMPDGSVEMTRVKGAQDLVNERLYRTRPEALKFTSIVDTPEVVLAKNNSLQMSERLYQEAWNKDKTNISIPLDTPAMLQAQINALQISNKLYQKDWDEAKQKGYDLRADAIEIKHAKASREIASEYKYKEGYRKQLGHHVGFRSLQDDPKLVWSIHAAKIQSDREYKKAYEKSKGIYNTPLDMMSIVQAKKCQVLVSDIDYRNYLHQWTCLPDQNDVIQAKKAYELQSDAIYKADLEWLRGIGWMPEGSPEVLRVKNAQEILCDSVYRTPVVKLKYTSIVDTPEVVLAKSNAENISIPKYREVWDKDKTSIHIMPDTPEINLARANALNVSNKLYREGWDEVKMSCDVRLDAIPIQAAKASREIASDYKYKLDHEKQKGHYVGTLTARDDNKIRWALIAGKIQNEREYRLQWAKWKTKFQSPVDMLSILHSKKCQTLVSDIDYRNYLHEWTCMPDQNDVIQAKKAYELQSDAVYKADLEWLRGIGWMPNDSVSVNHAKHAADIFSEKKYRTKIESLNFTPVDDRVDYVTAKQSTEIRDDIKYRKDWNAIKSKYTLTETPLLHTAQEAARILDQYLYKEGWEKQKATGYILPPDAVPFVHAHHSSDVQSELKYKAEHVKQKGHYVGVPTMRDDPKLVWFEHAGQIQNDRLYKENYHKSKAKINIPADMVSVVAAKEGQNLVSDIDYRHYLHQWTCHPDQNDVIQAKIAYDLQSDNVYKADLEWLRGIGWIPLDSVDHVRVTKNQEMVNQIKYKKDALANYPNFTSVEDPPEIVLAKINSVNQSDVKYKETFNKAKGKYIFSPDTPYISHSKDMGKLYSTILYKGAWEGTKAYGYTLDERYIPIVGAKHADLVNSELKYKETYEKQKGHYLAGKEISEFPGV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"length": 7150, "header": "tr|A0A9J7H460-1|A0A9J7H460_CRIGR Isoform 1 of Nebulin isoform X4 OS=Cricetulus griseus OX=10029 GN=Neb PE=4 SV=1 CANONICAL=A0A9J7H460-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 49, "start_aa": "Thr", "end_pos": 49, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr49", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H3K4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3K4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H3K4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3K4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100754575", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754575", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "actin filament binding", "id": "GO:0051015", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051015", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H460", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H460" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "Z disc", "id": "GO:0030018", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030018", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H460", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H460" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "cardiac muscle thin filament assembly", "id": "GO:0071691", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071691", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H460", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H460" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1041, "end_pos": 1043, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1285, "end_pos": 1287, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1529, "end_pos": 1531, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1650, "end_pos": 1652, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1732, "end_pos": 1734, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2017, "end_pos": 2019, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2126, "end_pos": 2128, "annotation": "n_glycosylation_sequon" }, { "start_pos": 217, "end_pos": 219, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2258, "end_pos": 2260, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2469, "end_pos": 2471, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2504, "end_pos": 2506, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2747, "end_pos": 2749, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2990, "end_pos": 2992, "annotation": "n_glycosylation_sequon" }, { "start_pos": 301, "end_pos": 303, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3233, "end_pos": 3235, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3476, "end_pos": 3478, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3719, "end_pos": 3721, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3962, "end_pos": 3964, "annotation": "n_glycosylation_sequon" }, { "start_pos": 4083, "end_pos": 4085, "annotation": "n_glycosylation_sequon" }, { "start_pos": 410, "end_pos": 412, "annotation": "n_glycosylation_sequon" }, { "start_pos": 4166, "end_pos": 4168, "annotation": "n_glycosylation_sequon" }, { "start_pos": 4186, "end_pos": 4188, "annotation": "n_glycosylation_sequon" }, { "start_pos": 4413, "end_pos": 4415, "annotation": "n_glycosylation_sequon" }, { "start_pos": 4448, "end_pos": 4450, "annotation": "n_glycosylation_sequon" }, { "start_pos": 4608, "end_pos": 4610, "annotation": "n_glycosylation_sequon" }, { "start_pos": 4636, "end_pos": 4638, "annotation": "n_glycosylation_sequon" }, { "start_pos": 4880, "end_pos": 4882, "annotation": "n_glycosylation_sequon" }, { "start_pos": 4899, "end_pos": 4901, "annotation": "n_glycosylation_sequon" }, { "start_pos": 5144, "end_pos": 5146, "annotation": "n_glycosylation_sequon" }, { "start_pos": 5452, "end_pos": 5454, "annotation": "n_glycosylation_sequon" }, { "start_pos": 5495, "end_pos": 5497, "annotation": "n_glycosylation_sequon" }, { "start_pos": 550, "end_pos": 552, "annotation": "n_glycosylation_sequon" }, { "start_pos": 5692, "end_pos": 5694, "annotation": "n_glycosylation_sequon" }, { "start_pos": 5741, "end_pos": 5743, "annotation": "n_glycosylation_sequon" }, { "start_pos": 5843, "end_pos": 5845, "annotation": "n_glycosylation_sequon" }, { "start_pos": 586, "end_pos": 588, "annotation": "n_glycosylation_sequon" }, { "start_pos": 6000, "end_pos": 6002, "annotation": "n_glycosylation_sequon" }, { "start_pos": 6003, "end_pos": 6005, "annotation": "n_glycosylation_sequon" }, { "start_pos": 6182, "end_pos": 6184, "annotation": "n_glycosylation_sequon" }, { "start_pos": 624, "end_pos": 626, "annotation": "n_glycosylation_sequon" }, { "start_pos": 6338, "end_pos": 6340, "annotation": "n_glycosylation_sequon" }, { "start_pos": 6430, "end_pos": 6432, "annotation": "n_glycosylation_sequon" }, { "start_pos": 6482, "end_pos": 6484, "annotation": "n_glycosylation_sequon" }, { "start_pos": 6510, "end_pos": 6512, "annotation": "n_glycosylation_sequon" }, { "start_pos": 6520, "end_pos": 6522, "annotation": "n_glycosylation_sequon" }, { "start_pos": 6540, "end_pos": 6542, "annotation": "n_glycosylation_sequon" }, { "start_pos": 6558, "end_pos": 6560, "annotation": "n_glycosylation_sequon" }, { "start_pos": 658, "end_pos": 660, "annotation": "n_glycosylation_sequon" }, { "start_pos": 6594, "end_pos": 6596, "annotation": "n_glycosylation_sequon" }, { "start_pos": 6629, "end_pos": 6631, "annotation": "n_glycosylation_sequon" }, { "start_pos": 6722, "end_pos": 6724, "annotation": "n_glycosylation_sequon" }, { "start_pos": 6753, "end_pos": 6755, "annotation": "n_glycosylation_sequon" }, { "start_pos": 6784, "end_pos": 6786, "annotation": "n_glycosylation_sequon" }, { "start_pos": 6815, "end_pos": 6817, "annotation": "n_glycosylation_sequon" }, { "start_pos": 6846, "end_pos": 6848, "annotation": "n_glycosylation_sequon" }, { "start_pos": 6877, "end_pos": 6879, "annotation": "n_glycosylation_sequon" }, 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This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035303999", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303999" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H3L4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3L4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Scgb3a1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3L4", "locus": {} } ], "crossref": [ { "id": "A0A9J7H3L4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H3L4", "database": "AlphaFoldDB", "categories": [] }, { "id": "100766899", "url": "https://www.ncbi.nlm.nih.gov/gene/100766899", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR040301", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040301", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100766899", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766899", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H3L4", "url": "https://www.orthodb.org/?gene=A0A9J7H3L4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR34829", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34829", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34829:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34829:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF20490", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20490", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035303999", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303999", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H3L4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3L4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H3L4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3L4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKLTAIFLVFCVALLSDSGFAFFMNSVAKSVVEPVADLAPAAEAVAGAVPSLPLSRFSILRFILASLGIPVDPLIDGSRKCVTELGPEAVGAVKTLLVLSSAILGSNKGTLKLGFSFPGGPDSIRLRYPNVFDFLYSTKETMMV", "length": 144, "header": "tr|A0A9J7H3L4-1|A0A9J7H3L4_CRIGR Isoform 1 of Secretoglobin family 3A member 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Scgb3a1 PE=4 SV=1 CANONICAL=A0A9J7H3L4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H3L4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3L4/entry#A0A9J7H3L4-1", "sequence": { "sequence": "MKLTAIFLVFCVALLSDSGFAFFMNSVAKSVVEPVADLAPAAEAVAGAVPSLPLSRFSILRFILASLGIPVDPLIDGSRKCVTELGPEAVGAVKTLLVLSSAILGSNKGTLKLGFSFPGGPDSIRLRYPNVFDFLYSTKETMMV", "length": 144, "header": "tr|A0A9J7H3L4-1|A0A9J7H3L4_CRIGR Isoform 1 of Secretoglobin family 3A member 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Scgb3a1 PE=4 SV=1 CANONICAL=A0A9J7H3L4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. 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"https://www.uniprot.org/uniprotkb/A0A9J7H3T9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H3T9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3T9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H3T9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3T9" } ], "pmid": "" }, { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H3T9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3T9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { 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"sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7H3U5-1", "uniprot_ac": "A0A9J7H3U5", "uniprot_id": "A0A9J7H3U5_CRIGR", "mass": { "chemical_mass": 50731.0, "monoisotopic_mass": 50731.0 }, "refseq": { "ac": "XP_035302248", "name": "uncharacterized protein LOC118239058 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302248" }, "gene_names": [ { "name": "LOC118239058", "type": "recommended", "evidence": [ { "id": "A0A9J7H3U5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3U5" } ] }, { "name": "LOC118239058", "type": "synonym", "evidence": [ { "id": "XP_035302248", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302248" } ] } ], "protein_names": [ { "name": "Uncharacterized protein LOC118239058 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7H3U5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3U5/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein LOC118239058 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_035302248", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302248" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035302248", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302248" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H3U5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3U5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC118239058", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3U5", "locus": {} } ], "crossref": [ { "id": "A0A9J7H3U5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H3U5", "database": "AlphaFoldDB", "categories": [] }, { "id": "118239058", "url": "https://www.ncbi.nlm.nih.gov/gene/118239058", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004031", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004031", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:118239058", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118239058", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H3U5", "url": "https://www.orthodb.org/?gene=A0A9J7H3U5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PF00822", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00822", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035302248", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302248", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H3U5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3U5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H3U5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3U5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KAG0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAG0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KAG0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAG0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDQNSSGLQSKRTAAPHSRQNKTQDSLKETSNLPDDTQGHQANMQARMPISHPQEHNSRDLSTSTPMTRRVSIQEPPATLFIPRKFSTPASFPYTIPPQRSSTQETQSQSPQLETQDIQSVAYNRWLRSREGSSHYHYHELDILNSQTLCSVQSEISSLHIDTGSHLSLIQPHKPNRKQTRPNVDVPPSITCSPEASVRSFESFVWDSKESLTGLSYYSMSSQSNLGSFFKLSNSSPTTGSSRAQSKRWSLLPMGWKLLLEAKKISRYLSLVLTVAGMLMLNLIALWQPWIHFQVPLVPSWDPTGPKSIPIDTIFFMRCPDISCMNEYDKNAYLLDLAWACLLVSGVMSFCVCMGLISTIFFPSTNMPLMDFSLFICSLMTGISIILAVLFYLMQARKFLQEDMTYTLGSSFYLAWINVFFFFMIGLFSYLNYMNFWSILAVQALWS", "length": 447, "header": "tr|A0A9J7H3U5-1|A0A9J7H3U5_CRIGR Isoform 1 of Uncharacterized protein LOC118239058 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC118239058 PE=4 SV=1 CANONICAL=A0A9J7H3U5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H3U5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3U5/entry#A0A9J7H3U5-1", "sequence": { "sequence": "MDQNSSGLQSKRTAAPHSRQNKTQDSLKETSNLPDDTQGHQANMQARMPISHPQEHNSRDLSTSTPMTRRVSIQEPPATLFIPRKFSTPASFPYTIPPQRSSTQETQSQSPQLETQDIQSVAYNRWLRSREGSSHYHYHELDILNSQTLCSVQSEISSLHIDTGSHLSLIQPHKPNRKQTRPNVDVPPSITCSPEASVRSFESFVWDSKESLTGLSYYSMSSQSNLGSFFKLSNSSPTTGSSRAQSKRWSLLPMGWKLLLEAKKISRYLSLVLTVAGMLMLNLIALWQPWIHFQVPLVPSWDPTGPKSIPIDTIFFMRCPDISCMNEYDKNAYLLDLAWACLLVSGVMSFCVCMGLISTIFFPSTNMPLMDFSLFICSLMTGISIILAVLFYLMQARKFLQEDMTYTLGSSFYLAWINVFFFFMIGLFSYLNYMNFWSILAVQALWS", "length": 447, "header": "tr|A0A9J7H3U5-1|A0A9J7H3U5_CRIGR Isoform 1 of Uncharacterized protein LOC118239058 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC118239058 PE=4 SV=1 CANONICAL=A0A9J7H3U5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KAG0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3U5/entry#A0A9J7KAG0-1", "sequence": { "sequence": "MDQNSSGLQSKRTAAPHSRQNKTQDSLKETSNLPDDTQGHQANMQARMPISHPQEHNSRDLSTSTPMTRRVSIQEPPATLFIPRKFSTPASFPYTIPPQRSSTQETQSQSPQLETQDIQSVAYNRWLRSREGSSHYHYHELDILNSQTLCSVQSEISSLHIDTGSHLSLIQPHKPNRKQTRPNVDVPPSITCSPEASVRSFESFVWDSKESLTGLSYYSMSSQSNLGSFFKLSNSSPTTGSSRAQSKRWSLLPMGWKLLLEAKKISRYLSLVLTVAGMLMLNLIALWQPWIHFQVPLVPSWDPTGPKSIPIDTIFFMRCPDISCMNEYDKNAYLLDLAWACLLVSGVMSFCVCMGLISTIFFPSTNMPLMDFSLFICSLMTGLFSYLNYMNFWSILAVQALWS", "length": 403, "header": "tr|A0A9J7KAG0-1|A0A9J7H3U5_CRIGR Computationally mapped isoform of Uncharacterized protein LOC118239058 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC118239058 PE=4 SV=1 CANONICAL=A0A9J7H3U5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035302918", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302918" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H3W9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3W9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC118239109", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3W9", "locus": {} } ], "crossref": [ { "id": "A0A9J7H3W9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H3W9", "database": "AlphaFoldDB", "categories": [] }, { "id": "118239109", "url": "https://www.ncbi.nlm.nih.gov/gene/118239109", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:118239109", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118239109", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_035302918", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302918", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H3W9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3W9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H3W9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3W9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPSEPPPETSRARVQRPGLTHTPRAHTPTVARAGTTPPPPPRRPKKLSKLSARSNPRPQPSGRPALTFPGGFPAHAASIPSPPIAPAAPSPTAPRQKQTLRRAWPATPTPRGRARGAGGLRPAHAPEGAGPRPLLSAPTHLRNATWPGPGAERWDRDSRSQLGGRKWPSPPFEERFRSAYCVRLAGGWALPGHQACQSQDLRWPQTPKLNDILLQTHKQHCVHELPCLMVLSDRSADPDRWGPELGT", "length": 247, "header": "tr|A0A9J7H3W9-1|A0A9J7H3W9_CRIGR Isoform 1 of Translation initiation factor IF-2-like OS=Cricetulus griseus OX=10029 GN=LOC118239109 PE=4 SV=1 CANONICAL=A0A9J7H3W9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H3W9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3W9/entry#A0A9J7H3W9-1", "sequence": { "sequence": "MPSEPPPETSRARVQRPGLTHTPRAHTPTVARAGTTPPPPPRRPKKLSKLSARSNPRPQPSGRPALTFPGGFPAHAASIPSPPIAPAAPSPTAPRQKQTLRRAWPATPTPRGRARGAGGLRPAHAPEGAGPRPLLSAPTHLRNATWPGPGAERWDRDSRSQLGGRKWPSPPFEERFRSAYCVRLAGGWALPGHQACQSQDLRWPQTPKLNDILLQTHKQHCVHELPCLMVLSDRSADPDRWGPELGT", "length": 247, "header": "tr|A0A9J7H3W9-1|A0A9J7H3W9_CRIGR Isoform 1 of Translation initiation factor IF-2-like OS=Cricetulus griseus OX=10029 GN=LOC118239109 PE=4 SV=1 CANONICAL=A0A9J7H3W9-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 109, "start_aa": "Thr", "end_pos": 109, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr109", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 92, "start_aa": "Thr", "end_pos": 92, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr92", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035304222", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304222" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H3Z3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3Z3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tns4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3Z3", "locus": {} } ], "crossref": [ { "id": "A0A9J7H3Z3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H3Z3", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd01213", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01213", "database": "CDD", "categories": [ "Protein Classification" ] }, 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H409", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H409" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:113836465", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113836465", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H409", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H409" } ], "pmid": "" }, { "name": "nucleic acid binding", "id": "GO:0003676", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003676", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H409", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H409" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "virion assembly", "id": "GO:0019068", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019068", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H409", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H409" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7H409", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H409" }, { "id": "PF02093", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02093" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Core shell protein Gag P30", "eco_id": "ECO_0000259", "start_pos": 113, "end_pos": 299, "start_aa": "Gln", "end_aa": "Asn", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7H414-1", "uniprot_ac": "A0A9J7H414", "uniprot_id": "A0A9J7H414_CRIGR", "mass": { "chemical_mass": 26694.0, "monoisotopic_mass": 26694.0 }, "refseq": { "ac": "XP_035304593", "name": "C-type lectin domain family 2 member D11-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304593" }, "gene_names": [ { "name": "LOC118239257", "type": "recommended", "evidence": [ { "id": "A0A9J7H414", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H414" } ] }, { "name": "LOC118239257", "type": "synonym", "evidence": [ { "id": "XP_035304593", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304593" } ] } ], "protein_names": [ { "name": "C-type lectin domain family 2 member D11-like", "type": "synonym", "evidence": [ { "id": "XP_035304593", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304593" }, { "id": "A0A9J7H414", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H414/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048601.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: incomplete on the amino end.", "evidence": [ { "database": "RefSeq", "id": "XP_035304593", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304593" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H414", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H414" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC118239257", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H414", "locus": {} } ], "crossref": [ { "id": "A0A9J7H414", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H414", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd03593", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03593", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "118239257", "url": "https://www.ncbi.nlm.nih.gov/gene/118239257", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001304", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001304", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016186", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016186", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016187", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016187", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050828", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050828", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:118239257", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118239257", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H414", "url": "https://www.orthodb.org/?gene=A0A9J7H414", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45710", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45710", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45710:SF35", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45710:SF35", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00059", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00059", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035304593", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304593", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H414", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H414", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H414-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H414-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "VQTTTAWLGRSFSNRRPLAEVPFPASLVFFPPGHPVWSRAFFERDISALSVKNRQGKYLRIISAESPVKLHCCYGVIAFLSVAVIALFVALLLPRAGKPEEVSIKCVCAFCPRDWIGVGSKCFNFSEKVENWTSSQTFCVAQGAQLARFDIPEELEFLKRYKGEHDHWIGLHRKSSEHHWMWTDGTEYNNLTSPRGEGECAYLSGSDISSGRNYTHRRWICSKPNSFTACDVPKQS", "length": 236, "header": "tr|A0A9J7H414-1|A0A9J7H414_CRIGR Isoform 1 of C-type lectin domain family 2 member D11-like OS=Cricetulus griseus OX=10029 GN=LOC118239257 PE=4 SV=1 CANONICAL=A0A9J7H414-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H414-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H414/entry#A0A9J7H414-1", "sequence": { "sequence": "VQTTTAWLGRSFSNRRPLAEVPFPASLVFFPPGHPVWSRAFFERDISALSVKNRQGKYLRIISAESPVKLHCCYGVIAFLSVAVIALFVALLLPRAGKPEEVSIKCVCAFCPRDWIGVGSKCFNFSEKVENWTSSQTFCVAQGAQLARFDIPEELEFLKRYKGEHDHWIGLHRKSSEHHWMWTDGTEYNNLTSPRGEGECAYLSGSDISSGRNYTHRRWICSKPNSFTACDVPKQS", "length": 236, "header": "tr|A0A9J7H414-1|A0A9J7H414_CRIGR Isoform 1 of C-type lectin domain family 2 member D11-like OS=Cricetulus griseus OX=10029 GN=LOC118239257 PE=4 SV=1 CANONICAL=A0A9J7H414-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035304626", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304626" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H433", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H433" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113837107", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H433", "locus": {} } ], "crossref": [ { "id": "cd03593", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03593", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "113837107", "url": "https://www.ncbi.nlm.nih.gov/gene/113837107", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001304", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001304", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016186", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016186", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016187", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016187", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050828", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050828", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113837107", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113837107", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H433", "url": "https://www.orthodb.org/?gene=A0A9J7H433", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45710", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45710", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45710:SF35", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45710:SF35", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00059", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00059", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035304626", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304626", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H433", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H433", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H433-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H433-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNAEEAPTASMCMLQTEPTRADLLQEGEMGKKLQEKCLRIISVESPVKLYCCYGAIAVFTAAVLSLSVALSLSGRPVSENHGSCYATCPKDWIEFRSKCFYFSEDMRNWTFSQTSCVALEAHLAQFQSLEELNFLKRHKGPSNHWIGLHRESSEHPWMXTDNTEYNNLVPTRGEGQCGYLSDMGISSARDYTHRKWICSKPNK", "length": 203, "header": "tr|A0A9J7H433-1|A0A9J7H433_CRIGR Isoform 1 of LOW QUALITY PROTEIN: C-type lectin domain family 2 member H-like OS=Cricetulus griseus OX=10029 GN=LOC113837107 PE=4 SV=1 CANONICAL=A0A9J7H433-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H433-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H433/entry#A0A9J7H433-1", "sequence": { "sequence": "MNAEEAPTASMCMLQTEPTRADLLQEGEMGKKLQEKCLRIISVESPVKLYCCYGAIAVFTAAVLSLSVALSLSGRPVSENHGSCYATCPKDWIEFRSKCFYFSEDMRNWTFSQTSCVALEAHLAQFQSLEELNFLKRHKGPSNHWIGLHRESSEHPWMXTDNTEYNNLVPTRGEGQCGYLSDMGISSARDYTHRKWICSKPNK", "length": 203, "header": "tr|A0A9J7H433-1|A0A9J7H433_CRIGR Isoform 1 of LOW QUALITY PROTEIN: C-type lectin domain family 2 member H-like OS=Cricetulus griseus OX=10029 GN=LOC113837107 PE=4 SV=1 CANONICAL=A0A9J7H433-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H433", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H433" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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"UniProtKB", "id": "A0A9J7H433", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H433" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "external side of plasma membrane", "id": "GO:0009897", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009897", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H433", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H433" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 108, "end_pos": 110, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7H433", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H433" }, { "id": "PS50041", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50041" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C-type lectin", "eco_id": "ECO_0000259", "start_pos": 95, "end_pos": 199, "start_aa": "Phe", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 108, "end_pos": 110 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", 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{ "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7H465-1", "uniprot_ac": "A0A9J7H465", "uniprot_id": "A0A9J7H465_CRIGR", "mass": { "chemical_mass": 121673.0, "monoisotopic_mass": 121673.0 }, "refseq": { "ac": "XP_035302472", "name": "LOW QUALITY PROTEIN: teashirt homolog 2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302472" }, "gene_names": [ { "name": "Tshz2", "type": "recommended", "evidence": [ { "id": "A0A9J7H465", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H465" } ] }, { "name": "Tshz2", "type": "synonym", "evidence": [ { "id": "XP_035302472", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302472" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: teashirt homolog 2", "type": "synonym", "evidence": [ { "id": "XP_035302472", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302472" }, { "id": "A0A9J7H465", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H465/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases frameshifts :: corrected 2 indels internal stop codons :: corrected 1 genomic stop codons ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035302472", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302472" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H465", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H465" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tshz2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H465", "locus": {} } ], "crossref": [ { "id": "cd00086", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00086", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100759966", "url": "https://www.ncbi.nlm.nih.gov/gene/100759966", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001356", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001356", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027008", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058631", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058631", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100759966", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759966", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H465", "url": "https://www.orthodb.org/?gene=A0A9J7H465", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12487", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12487", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12487:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12487:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF26094", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26094", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035302472", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302472", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H465", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H465", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H465-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H465-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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"length": 1103, "header": "tr|A0A9J7H465-1|A0A9J7H465_CRIGR Isoform 1 of LOW QUALITY PROTEIN: teashirt homolog 2 OS=Cricetulus griseus OX=10029 GN=Tshz2 PE=3 SV=1 CANONICAL=A0A9J7H465-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H465-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H465/entry#A0A9J7H465-1", "sequence": { "sequence": 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"sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7H495-1", "uniprot_ac": "A0A9J7H495", "uniprot_id": "A0A9J7H495_CRIGR", "mass": { "chemical_mass": 94144.0, "monoisotopic_mass": 94144.0 }, "refseq": { "ac": "XP_035298402", "name": "kelch-like protein 29", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035298402" }, "gene_names": [ { "name": "Klhl29", "type": "recommended", "evidence": [ { "id": "A0A9J7H495", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H495" } ] }, { "name": "Klhl29", "type": "synonym", "evidence": [ { "id": "XP_035298402", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035298402" } ] } ], "protein_names": [ { "name": "Kelch-like protein 29", "type": "synonym", "evidence": [ { "id": "A0A9J7H495", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H495/entry#names_and_taxonomy" } ] }, { "name": "kelch-like protein 29", "type": "synonym", "evidence": [ { "id": "XP_035298402", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035298402" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613660.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035298402", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035298402" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H495", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H495" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Klhl29", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H495", "locus": {} } ], "crossref": [ { "id": "A0A9J7H495", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H495", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd18468", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18468", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100761820", "url": "https://www.ncbi.nlm.nih.gov/gene/100761820", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000210", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000210", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006652", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006652", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011705", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011705", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015915", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015915", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056737", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056737", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100761820", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761820", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SHSYGMN", "url": "https://omabrowser.org/oma/group/SHSYGMN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7H495", "url": "https://www.orthodb.org/?gene=A0A9J7H495", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45632", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45632", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45632:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45632:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00651", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00651", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01344", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01344", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07707", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07707", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24981", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24981", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035298402", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035298402", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H495", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H495", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H495-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H495-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSRHHSRFERDYRVGWDRREWSVNGTHGATSVCSVTSGAGGGTASSLSARPGLLPLPVVPSRLPTPATAPAPCTTGSNDAITSLVASSASAVTTKAPGISKADNQSQGLTTSIRWGQTPINQSTPWDTDEPPSKQMRESDNPGTGPWVTTVAAGNQPSLIAHSYGVAQPPTFSPAVNVQAPVIGVTPSLPPHVGPQLPLMPGHYSLPQPPSQPLSSVVVNMPAQALYASPQPLAVSTLPGVGQVARPGPTAVGNGHMAGPLMPPPPPAQPSAALPSSAPATNGPPTTDSAHGLQMLRTIGVGKYEFTDPGHPKEMLKELNQQRRAKAFTDLKIVVEGREFEVHQNVLASCSLYFKDLIQRSVQDGSQGSREKLELVLSNLQADVLELLLEFVYTGSLVIDSANAKTLLEAASKFQFHTFCKVCVSFLEKQLTASNCLGVLAMAEAMQCSELYHMAKAFALQIFPEVAAQEEILSISKDDFIAYVSNDSLNTKAEELVYETVIKWIKKDPAARAQYAAELLAAVRLPFIHPSYLLNVVDNEELIKSSEACRDLVNEAKRYHMLPHARQEMQTPRTRPRLSAGVAEVIVLVGGRQMVGMTQRSLVAVTCWNPQNNKWYPLASLPFYDREFFSVVSAGDNIYLSGGMESGVTLADVWCYMSLLDNWNLVSRMTVPRCRHNSLVYDGKIYTLGGLGVAGNVDHVERYDTITNQWEAVAPLPKAVHSAAATVCGGKVYVFGGVNEAGRAAGVLQSYVPQTNTWSFIESPMIDNKYAPAVTLNGFVFILGGAYARATTIYDPEKGNIKAGPNMNHSRQFCSAVVLDGKIYATGGIVSSEGPALGNMEAYEPTTNTWTLLPHMPCPVFRHGCVVIKKYIQSG", "length": 875, "header": "tr|A0A9J7H495-1|A0A9J7H495_CRIGR Isoform 1 of Kelch-like protein 29 OS=Cricetulus griseus OX=10029 GN=Klhl29 PE=4 SV=1 CANONICAL=A0A9J7H495-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H495-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H495/entry#A0A9J7H495-1", "sequence": { "sequence": "MSRHHSRFERDYRVGWDRREWSVNGTHGATSVCSVTSGAGGGTASSLSARPGLLPLPVVPSRLPTPATAPAPCTTGSNDAITSLVASSASAVTTKAPGISKADNQSQGLTTSIRWGQTPINQSTPWDTDEPPSKQMRESDNPGTGPWVTTVAAGNQPSLIAHSYGVAQPPTFSPAVNVQAPVIGVTPSLPPHVGPQLPLMPGHYSLPQPPSQPLSSVVVNMPAQALYASPQPLAVSTLPGVGQVARPGPTAVGNGHMAGPLMPPPPPAQPSAALPSSAPATNGPPTTDSAHGLQMLRTIGVGKYEFTDPGHPKEMLKELNQQRRAKAFTDLKIVVEGREFEVHQNVLASCSLYFKDLIQRSVQDGSQGSREKLELVLSNLQADVLELLLEFVYTGSLVIDSANAKTLLEAASKFQFHTFCKVCVSFLEKQLTASNCLGVLAMAEAMQCSELYHMAKAFALQIFPEVAAQEEILSISKDDFIAYVSNDSLNTKAEELVYETVIKWIKKDPAARAQYAAELLAAVRLPFIHPSYLLNVVDNEELIKSSEACRDLVNEAKRYHMLPHARQEMQTPRTRPRLSAGVAEVIVLVGGRQMVGMTQRSLVAVTCWNPQNNKWYPLASLPFYDREFFSVVSAGDNIYLSGGMESGVTLADVWCYMSLLDNWNLVSRMTVPRCRHNSLVYDGKIYTLGGLGVAGNVDHVERYDTITNQWEAVAPLPKAVHSAAATVCGGKVYVFGGVNEAGRAAGVLQSYVPQTNTWSFIESPMIDNKYAPAVTLNGFVFILGGAYARATTIYDPEKGNIKAGPNMNHSRQFCSAVVLDGKIYATGGIVSSEGPALGNMEAYEPTTNTWTLLPHMPCPVFRHGCVVIKKYIQSG", "length": 875, "header": "tr|A0A9J7H495-1|A0A9J7H495_CRIGR Isoform 1 of Kelch-like protein 29 OS=Cricetulus griseus OX=10029 GN=Klhl29 PE=4 SV=1 CANONICAL=A0A9J7H495-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 186, "start_aa": "Thr", "end_pos": 186, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr186", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 250, "start_aa": "Thr", "end_pos": 250, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr250", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 65, "start_aa": "Thr", "end_pos": 65, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr65", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H495", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H495" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H495", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H495" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100761820", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761820", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A286ZJB6-1", "protein_name": "Kelch like family member 29", "gene_name": "KLHL29", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSRHHSRFERDYRVGWDRREWSANGTHGTTSICSATAGAGGSTASSLSARPGLLPLPVVPSRLPTPATAPAPCTTGSGEAITSLVASSASAVTTKAPGISKADNQSQGLTTSIRWGQTPINQSTPWDTDEPPSKQMRESDNPGTGPWGTTVAAGSQPALIAHSYGVAQPPTFSPAVNVQAPVIGVTPSLPPHVGPQLPLMPGHYSLPQPPSQPLSSVVVNMPAQALYASPQPLAVSTLPGVGQVARPGPTAVGNGHMAGPLLPPPPPAQPSATLPSGAPATNGPPTSDSAHGLQMLRTIGVGKYEFTDPGHPKEMLKELNQQRRAKAFTDLKIVVEGREFEVHQNVLASCSLYFKDLIQRSVQDGSQCGREKLELVLSNLQADVLELLLEFVYTGSLVIDSANAKTLLEAASKFQFHTFCKVCVSFLEKQLTASNCLGVLAMAEAMQCSELYHMAKAFALQIFPEVAAQEEILSISKDDFIAYISNDSLNTKAEELVYETVIKWIKKDPGSRAQYAAELLAVVRLPFIHPSYLLNVVDNEELIKSSEACRDLVNEAKRYHMLPHARQEMQTPRTRPRLSAGVAEVIVLVGGRQMVGMTQRSLVAVTCWNPQNNKWYPLASLPFYDREFFSVVSAGDNIYLSGGMESGVTLADVWCYMSLLDNWNLVSRMTVPRCRHNSLVYDGKIYTLGGLGVAGNVDHVERYDTITNQWEAVAPLPKAVHSAAATVCGGKIYVFGGVNEAGRAAGVLQSYVPQTNTWSFIESPMIDNKYAPAVTLNGFVFILGGAYARATTIYDPDKGNIKAGPNMNHSRQFCSAVVLDGKIYATGGIVSSEGPALGNMEAYEPATNTWTLLPTCPAPCSDTAAW", "length": 866 }, "evidence": [ { "id": "A0A9J7H495", "url": "https://omabrowser.org/oma/group/A0A9J7H495/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8V0Y2Y7-1", "protein_name": "Kelch like family member 29", "gene_name": "KLHL29", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSWLRTLSQCVASCNLASQKPPAKCKDLLSCLLTITPEADFDTHSGYHRARSRVPCEQKLPCIEMSRHHSRFERDYRAGWDRRDWSSNGNHVSSTNCSSAASTNSNNRPGLLPLPIVPSRLPTPATATCTTVSSDVITSLVANSSPASTTKTPCISKTENQPQGLATSVRWGQTPINQSTPWDTDEPPSKQMRENENPGAAPWVTTVAAGSQPALITHSYGMTQPPTFSPAANVQAPVIGVTPSLPPHVTPQLPLMPAHYQLQPQPSQPLSNMVVNLQSQPLYTNSQPLSMSSMSGVGPVAHPSPGVVGNGHLACPMLPPPPPALPSAALPSNAPTTNGQVAAPLPPNAAVGPDNTNGVQMLRTIGVGKYEFTDPWHPKEMLKELNQQRRAKEFTDLKIIVEGKEFEVHQNVLASCSLYFKDLIKRSPRDSSRSGEKLELAMSNLTADVLELLLEFVYTGSLIIDSANAKTLLEAASKFQFHTFCKVCVSFLEKQLTASNCLGILAMAEAMQCTELYNMAKAYALQIFPEVANQEEILNISKDDFISYMSNDSLNTKAEELVYETVIKWIKKDAAIRAQYAAELLAVVRLPFIHPSYLLNVVDNEELIKSSEACRDLVNEAKRYHMLPHARQEMQTPRTRPRLSAGVAEVIVLVGGRQMIGMNQRALTAVTCLNPQNNKWYPLASLPFYDREFFSVVSAGDNIYLSGGMESGVTLADVWCYMSLLDNWNLVSRMTVPRCRHNSLVYDGKIYTIGGVGVAGNVDHVERYDTITNQWETIAPLPKAVHSAAATVCGGKIYVFGGVNEAGRAAGVLQSYIPQTNSWSFIESPMIDNKYAPAVTLNGFIFILGGAYARATTIYDPEKGNIKAGPNMNHSRQFCSAVVLDGKIYATGGIVSSEGPALGNMEAYDPKTNTWTLLPNMPCPVFRHGCVVIKKYIQSG", "length": 940 }, "evidence": [ { "id": "A0A9J7H495", "url": "https://omabrowser.org/oma/group/A0A9J7H495/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "D4AEF4-1", "protein_name": "Kelch-like family member 29", "gene_name": "Klhl29", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSRHHSRFERDYRVGWDRREWSVNGTHGATSVCSVTSGAGGGTASSLSARPGLLPLPVVPSRLPTPATAPAPCTTGNSEAITSLVASSASAVTTKAPGISKADNQSQGLTTSIRWGQTPVNQSTPWDTDEPPSKQMREGDNPGTGPWVTTVAAGNQPSLIAHSYGVAQPPTFSPAVNVQAPVIGVTPSLPPHVGPQLPLMPGHYSLPQPPSQPLSSVVVNMPAQALYASPQPLAVSTLPGVGQVARPGPTAVGNGHMAGPLLPPPPPAQPSAALPSSVPATNGPPTTDSAHGLQMLRTIGVGKYEFTDPGHPKEMLKELNQQRRAKAFTDLKIVVEGREFEVHQNVLASCSLYFKDLIQRSVQDGSQGSREKLELVLSNLQADVLELLLEFVYTGSLVIDSANAKTLLEAASKFQFHTFCKVCVSFLEKQLTASNCLGVLAMAEAMQCSELYHMAKAFALQIFPEVAAQEEILSISKDDFIAYVSNDSLNTKAEELVYETVIKWIKKDPATRAQYAAELLAAVRLPFIHPSYLLNVVDNEELIKSSEACRDLVNEAKRYHMLPHARQEMQTPRTRPRLSAGVAEVIVLVGGRQMVGMTQRSLVAVTCWNPQNNKWYPLASLPFYDREFFSVVSAGDNIYLSGGMESGVTLADVWCYMSLLDNWNLVSRMTVPRCRHNSLVYDGKIYTLGGLGVAGNVDHVERYDTITNQWEAVAPLPKAVHSAAATVCGGKIYVFGGVNEAGRAAGVLQSYVPQTNTWSFIESPMIDNKYAPAVTLNGFVFILGGAYARATTIYDPEKGNIKAGPNMNHSRQFCSAVVLDGKIYATGGIVSSEGPALGNMEAYEPTTNTWTLLPHMPCPVFRHGCVVIKKYIQSG", "length": 875 }, "evidence": [ { "id": "A0A9J7H495", "url": "https://omabrowser.org/oma/group/A0A9J7H495/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1MN31-1", "protein_name": "Kelch like family member 29", "gene_name": "KLHL29", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSRHHSRFERDYRVGWDRREWSANGTHGTTSICSATAGAGGSSASSLSARPGLLPLPVVPSRLPTPATAPTPCTTGSGEAITSLVASSAPATTTKAPGISKADNQSQGLTTSIRWGQTPINQSTPWDTDEPPSKQMRESDNPGTGPWVTTVAAGSQPALISHSYGVAQPPTFSPAVNVQAPVIGVTPSLPPHVGPQLPLMPGHYSLPQPPSQPLSSVVVNMPAQALYASPQPLAVSTLPGVGQVARPGPTAVGNGHMAGPLLPPPLPAQPSATLPSVAPATNGPPTSESAHGLQMLRTIGVGKYEFTDPGHPKEMLKELNQQRRVKAFTDLKIVVEGREFEVHQNVLASCSLYFKDLIQRSVQDGSQCGREKLELVLSNLQADVLELLLEFVYTGSLVIDSANAKTLLEAASKFQFHTFCKVCVSFLEKQLTASNCLGVLAMAEAMQCSELYHMAKAFALQIFPEVAAQEEILSISKDDFIAYISNDSLNTKAEELVYETVIKWIKKDPVSRAQYAAELLAVVRLPFIHPSYLLNVVDNEELIKSSEACRDLVNEAKRYHMLPHARQEMQTPRTRPRLSAGVAEVIVLVGGRQMVGMTQRSLVAVTCWNPQNNKWYPLASLPFYDREFFSVVSAGDNIYLSGGMESGVTLADVWCYMSLLDNWNLVSRMTVPRCRHNSLVYDGKIYTLGGLGVAGNVDHVERYDTITNQWEAVAPLPKAVHSAAATVCGGKIYVFGGVNEAGRAAGVLQSYVPQTNTWSFIESPMIDNKYAPAVTLNGFVFILGGAYARATTIYDPDKGNIKAGPNMNHSRQFCSAVVLDGKIYATGGIVSSEGPALGNMEAYEPATNTWTLLPHMPCPVFRHGCVVIKKYIQSG", "length": 875 }, "evidence": [ { "id": "A0A9J7H495", "url": "https://omabrowser.org/oma/group/A0A9J7H495/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q80T74-1", "protein_name": "Kelch-like protein 29", "gene_name": "Klhl29", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSRHHSRFERDYRIGWDRREWSVNGTHGATSVCSVTSGAGGSTASSLSARPGLLPLPVVPSRLPTPATAPAPCTTGSSEAITSLVVSSASAATTKAPGISKADNQSQGLTTSIRWGQTPVNQSTPWDTDEPPSKQMRESDNPGTGPWVTTVAAGNQPSLITHSYGVTQPPTFSPAVNVQAPVIGVTPSLPPHVGPQLPLIPGHYSLPQPPSQPLSSVVVNMPAQALYASPQPLAVSTLPGVGQVSRPGPTPVGNGHMAGPLLPPPPPAQPSAALPSSVPATNGPPTTDSAHGLQMLRTIGVGKYEFTDPGHPKEMLKELNQQRRAKAFTDLKIVVEGREFEVHQNVLASCSLYFKDLIQRSVQDSSQSSREKLELVLSNLQADVLELLLEFVYTGSLVIDSANAKTLLEAASKFQFHTFCKVCVSFLEKQLTASNCLGVLAMAEAMQCSELYHMAKAFALQIFPEVAAQEEILSISKDDFIAYVSNDSLNTKAEELVYETVIKWIKKDPATRAQYAAELLAAVRLPFIHPSYLLNVVDNEELIKSSEACRDLVNEAKRYHMLPHARQEMQTPRTRPRLSAGVAEVIVLVGGRQMVGMTQRSLVAVTCWNPQNNKWYPLASLPFYDREFFSVVSAGDNIYLSGGMESGVTLADVWCYMSLLDNWNLVSRMTVPRCRHNSLVYDGKIYTLGGLGVAGNVDHVERYDTITNQWEAVAPLPKAVHSAAATVCGGKIYVFGGVNEAGRAAGVLQSYVPQTNTWSFIESPMIDNKYAPAVTLNGFVFILGGAYARATTIYDPEKGNIKAGPNMNHSRQFCSAVVLDGKIYATGGIVSSEGPALGNMEAYEPTTNTWTLLPHMPCPVFRHGCVVIKKYIQSG", "length": 875 }, "evidence": [ { "id": "A0A9J7H495", "url": "https://omabrowser.org/oma/group/A0A9J7H495/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q96CT2-1", "protein_name": "Kelch-like protein 29", "gene_name": "KLHL29", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSRHHSRFERDYRVGWDRREWSVNGTHGTTSICSVTSGAGGGTASSLSVRPGLLPLPVVPSRLPTPATAPAPCTTGSSEAITSLVASSASAVTTKAPGISKGDSQSQGLATSIRWGQTPINQSTPWDTDEPPSKQMRESDNPGTGPWVTTVAAGNQPTLIAHSYGVAQPPTFSPAVNVQAPVIGVTPSLPPHVGPQLPLMPGHYSLPQPPSQPLSSVVVNMPAQALYASPQPLAVSTLPGVGQVARPGPTAVGNGHMAGPLLPPPPPAQPSATLPSGAPATNGPPTTDSAHGLQMLRTIGVGKYEFTDPGHPREMLKELNQQRRAKAFTDLKIVVEGREFEVHQNVLASCSLYFKDLIQRSVQDSGQGGREKLELVLSNLQADVLELLLEFVYTGSLVIDSANAKTLLEAASKFQFHTFCKVCVSFLEKQLTASNCLGVLAMAEAMQCSELYHMAKAFALQIFPEVAAQEEILSISKDDFIAYVSNDSLNTKAEELVYETVIKWIKKDPATRTQYAAELLAVVRLPFIHPSYLLNVVDNEELIKSSEACRDLVNEAKRYHMLPHARQEMQTPRTRPRLSAGVAEVIVLVGGRQMVGMTQRSLVAVTCWNPQNNKWYPLASLPFYDREFFSVVSAGDNIYLSGGMESGVTLADVWCYMSLLDNWNLVSRMTVPRCRHNSLVYDGKIYTLGGLGVAGNVDHVERYDTITNQWEAVAPLPKAVHSAAATVCGGKIYVFGGVNEAGRAAGVLQSYVPQTNTWSFIESPMIDNKYAPAVTLNGFVFILGGAYARATTIYDPEKGNIKAGPNMNHSRQFCSAVVLDGKIYATGGIVSSEGPALGNMEAYEPTTNTWTLLPHMPCPVFRHGCVVIKKYIQSG", "length": 875 }, "evidence": [ { "id": "A0A9J7H495", "url": "https://omabrowser.org/oma/group/A0A9J7H495/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 104, "end_pos": 106, "annotation": "n_glycosylation_sequon" }, { "start_pos": 121, "end_pos": 123, "annotation": "n_glycosylation_sequon" }, { "start_pos": 24, "end_pos": 26, "annotation": "n_glycosylation_sequon" }, { "start_pos": 486, "end_pos": 488, "annotation": "n_glycosylation_sequon" }, { "start_pos": 808, "end_pos": 810, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7H495", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H495" }, { "id": "PS50097", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50097" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BTB", "eco_id": "ECO_0000259", "start_pos": 329, "end_pos": 401, "start_aa": "Thr", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 65, 186, 250 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 104, "end_pos": 106 }, { "start_pos": 121, "end_pos": 123 }, { "start_pos": 24, "end_pos": 26 }, { "start_pos": 486, "end_pos": 488 }, { "start_pos": 808, "end_pos": 810 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_o_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_o_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7H499-1", "uniprot_ac": "A0A9J7H499", "uniprot_id": "A0A9J7H499_CRIGR", "mass": { "chemical_mass": 62226.0, "monoisotopic_mass": 62226.0 }, "refseq": { "ac": "XP_035303940", "name": "schlafen family member 12-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303940" }, "gene_names": [ { "name": "LOC118237615", "type": "recommended", "evidence": [ { "id": "A0A9J7H499", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H499" } ] }, { "name": "LOC118237615", "type": "synonym", "evidence": [ { "id": "XP_035303940", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303940" } ] } ], "protein_names": [ { "name": "Schlafen family member 12-like", "type": "synonym", "evidence": [ { "id": "A0A9J7H499", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H499/entry#names_and_taxonomy" } ] }, { "name": "schlafen family member 12-like", "type": "synonym", "evidence": [ { "id": "XP_035303940", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303940" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035303940", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303940" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H499", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H499" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC118237615", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H499", "locus": {} } ], "crossref": [ { "id": "A0A9J7H499", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H499", "database": "AlphaFoldDB", "categories": [] }, { "id": "118237615", "url": "https://www.ncbi.nlm.nih.gov/gene/118237615", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007421", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007421", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029684", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029684", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031450", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031450", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038461", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038461", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048729", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048729", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:118237615", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118237615", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H499", "url": "https://www.orthodb.org/?gene=A0A9J7H499", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12155", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12155", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12155:SF40", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12155:SF40", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04326", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04326", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17057", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17057", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF21026", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21026", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035303940", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303940", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H499", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H499", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H499-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H499-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSISLDQETDYAELVLSVGEITLGEMNRKLMKDTQLRKRQAKIISQAVCTLLNSGGGVVKAHIKNSNYIFTRDGIGLENSFNDILLLPQKYLDYMQNKDYFLIFVKPWNQNFSGLRVITLKTNFYLRSLSSSHELKAPDAVKFLKERKDTKGRSRQSRPGSFDSDELQPESLVMFFNMEKLTYEETFCFTKSKHAEVKMPPKEKILEILPQTVSAFANTEGGYLFIGLDGEKQQIIGFKADESDLVELKSEIEKCIGQLPVTHFCEEQEKIKYTCKFIPVHRQGTVCSYVCALRVERFCCAVFAAEPDSWHVEGSCVKRFTTEEWVKLQMDTTPGSSKENDKQTLQSSIPPLWAFSCFAHDIPEAQQQRAHLPVVFRKVTCSPEALFMEQFSEYERYEQLLWTELGSLCQGMLFISKTWILDPGSQEKQEVILDMLHISQDRLLTLHSFVLGDGELEDDSTVLRELGAKLKNYCKQTALTLKQMLVNHAGYTGKIGVVIKITYLGHRAVSLYDSSSIIHYPRDYYLTTKTVRNLEKALDEVLGTV", "length": 545, "header": "tr|A0A9J7H499-1|A0A9J7H499_CRIGR Isoform 1 of Schlafen family member 12-like OS=Cricetulus griseus OX=10029 GN=LOC118237615 PE=4 SV=1 CANONICAL=A0A9J7H499-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H499-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H499/entry#A0A9J7H499-1", "sequence": { "sequence": "MSISLDQETDYAELVLSVGEITLGEMNRKLMKDTQLRKRQAKIISQAVCTLLNSGGGVVKAHIKNSNYIFTRDGIGLENSFNDILLLPQKYLDYMQNKDYFLIFVKPWNQNFSGLRVITLKTNFYLRSLSSSHELKAPDAVKFLKERKDTKGRSRQSRPGSFDSDELQPESLVMFFNMEKLTYEETFCFTKSKHAEVKMPPKEKILEILPQTVSAFANTEGGYLFIGLDGEKQQIIGFKADESDLVELKSEIEKCIGQLPVTHFCEEQEKIKYTCKFIPVHRQGTVCSYVCALRVERFCCAVFAAEPDSWHVEGSCVKRFTTEEWVKLQMDTTPGSSKENDKQTLQSSIPPLWAFSCFAHDIPEAQQQRAHLPVVFRKVTCSPEALFMEQFSEYERYEQLLWTELGSLCQGMLFISKTWILDPGSQEKQEVILDMLHISQDRLLTLHSFVLGDGELEDDSTVLRELGAKLKNYCKQTALTLKQMLVNHAGYTGKIGVVIKITYLGHRAVSLYDSSSIIHYPRDYYLTTKTVRNLEKALDEVLGTV", "length": 545, "header": "tr|A0A9J7H499-1|A0A9J7H499_CRIGR Isoform 1 of Schlafen family member 12-like OS=Cricetulus griseus OX=10029 GN=LOC118237615 PE=4 SV=1 CANONICAL=A0A9J7H499-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035305325", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305325" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H4E0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4E0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113837380", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4E0", "locus": {} } ], "crossref": [ { "id": "A0A9J7H4E0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H4E0", "database": "AlphaFoldDB", "categories": [] }, { "id": "113837380", "url": "https://www.ncbi.nlm.nih.gov/gene/113837380", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026526", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026526", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113837380", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113837380", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H4E0", "url": "https://www.orthodb.org/?gene=A0A9J7H4E0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47741", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47741", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47741:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47741:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_035305325", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305325", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H4E0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4E0", 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"count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7H4H5-1", "uniprot_ac": "A0A9J7H4H5", "uniprot_id": "A0A9J7H4H5_CRIGR", "mass": { "chemical_mass": 64857.0, "monoisotopic_mass": 64857.0 }, "refseq": { "ac": "XP_035304070", "name": "mucin-1-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304070" }, "gene_names": [ { "name": "LOC118239206", "type": "recommended", "evidence": [ { "id": "A0A9J7H4H5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4H5" } ] }, { "name": "LOC118239206", "type": "synonym", "evidence": [ { "id": "XP_035304070", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304070" } ] } ], "protein_names": [ { "name": "Mucin-1-like", "type": "synonym", "evidence": [ { "id": "A0A9J7H4H5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4H5/entry#names_and_taxonomy" } ] }, { "name": "mucin-1-like", "type": "synonym", "evidence": [ { "id": "XP_035304070", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304070" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 100% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035304070", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304070" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H4H5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4H5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC118239206", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4H5", "locus": {} } ], "crossref": [ { "id": "A0A9J7H4H5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H4H5", "database": "AlphaFoldDB", "categories": [] }, { "id": "118239206", "url": "https://www.ncbi.nlm.nih.gov/gene/118239206", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:118239206", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118239206", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_035304070", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304070", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H4H5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4H5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H4H5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4H5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MADKCPEFWVTTLPLKTALASPSVAAPGLQARGRQALQPGSQRGGAANFRSSRDGRDLTLGEASHCPAAKQDHPSAHTQRLAPSLHPAHGVRGPAAPPRGPRGGPRPAPLRSAEGLRRAPAGTAAPLSRGPMGRPRASGCGRSAHGSKSPNMAARRAAPSPRTPEPHLARAAPGGQGAPAGGLTEPSLRAAPRAHGHTKAPYREPGFGLGHHIVGPAHPTRGRPRGSGWPPRPWCSPRARGRWCTPGTAALATPVRPGQWRARRPRLQPGDQVPAGTGLGDRGEPRQAAWPAGVTRGAELAGLGAHQGAAPGGEWDLAPFRRLQLVALRPWSSRPPVPNATLNNPRSSHTEPRERPRRAGTASLPKSGAGLQVLPCLSFPGTPSDTGTTRCPHAPPRWTRVVSVTEAGPRVRRASRCPLPRDREAVAAARTPGGPRRPRSVLKLPGCAGRGIHGGRGPRDSPQLGARPAWGLAVSGRSPGPPCGSTGAGQGLSPARRSPRPRGPGPRRVSSTRGGAGGAIAIYGHVLGPRAPPPARAPRSRLNSGGGGRGRSHTPPACAACLPAAPPPRPSPVSGPAARPAPSAPSLRARPGSLARAGPGAPGPAAGGRAGPAAVRSPAAAERVGGAGCRRLGGPRG", "length": 637, "header": "tr|A0A9J7H4H5-1|A0A9J7H4H5_CRIGR Isoform 1 of Mucin-1-like OS=Cricetulus griseus OX=10029 GN=LOC118239206 PE=4 SV=1 CANONICAL=A0A9J7H4H5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H4H5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4H5/entry#A0A9J7H4H5-1", "sequence": { "sequence": "MADKCPEFWVTTLPLKTALASPSVAAPGLQARGRQALQPGSQRGGAANFRSSRDGRDLTLGEASHCPAAKQDHPSAHTQRLAPSLHPAHGVRGPAAPPRGPRGGPRPAPLRSAEGLRRAPAGTAAPLSRGPMGRPRASGCGRSAHGSKSPNMAARRAAPSPRTPEPHLARAAPGGQGAPAGGLTEPSLRAAPRAHGHTKAPYREPGFGLGHHIVGPAHPTRGRPRGSGWPPRPWCSPRARGRWCTPGTAALATPVRPGQWRARRPRLQPGDQVPAGTGLGDRGEPRQAAWPAGVTRGAELAGLGAHQGAAPGGEWDLAPFRRLQLVALRPWSSRPPVPNATLNNPRSSHTEPRERPRRAGTASLPKSGAGLQVLPCLSFPGTPSDTGTTRCPHAPPRWTRVVSVTEAGPRVRRASRCPLPRDREAVAAARTPGGPRRPRSVLKLPGCAGRGIHGGRGPRDSPQLGARPAWGLAVSGRSPGPPCGSTGAGQGLSPARRSPRPRGPGPRRVSSTRGGAGGAIAIYGHVLGPRAPPPARAPRSRLNSGGGGRGRSHTPPACAACLPAAPPPRPSPVSGPAARPAPSAPSLRARPGSLARAGPGAPGPAAGGRAGPAAVRSPAAAERVGGAGCRRLGGPRG", "length": 637, "header": "tr|A0A9J7H4H5-1|A0A9J7H4H5_CRIGR Isoform 1 of Mucin-1-like OS=Cricetulus griseus OX=10029 GN=LOC118239206 PE=4 SV=1 CANONICAL=A0A9J7H4H5-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 382, "start_aa": "Thr", "end_pos": 382, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr382", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H4H5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4H5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H4H5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4H5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:118239206", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118239206", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 339, "end_pos": 341, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 382 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 339, "end_pos": 341 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", 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"field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], 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"summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302917" }, "gene_names": [ { "name": "Kiaa1755", "type": "recommended", "evidence": [ { "id": "A0A9J7H4I7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4I7" } ] }, { "name": "Kiaa1755", "type": "synonym", "evidence": [ { "id": "XP_035302917", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302917" } ] } ], "protein_names": [ { "name": "Uncharacterized protein KIAA1755 homolog", "type": "synonym", "evidence": [ { "id": "A0A9J7H4I7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4I7/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein KIAA1755 homolog", "type": "synonym", "evidence": [ { "id": "XP_035302917", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302917" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035302917", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302917" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H4I7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4I7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Kiaa1755", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4I7", "locus": {} } ], "crossref": [ { "id": "A0A9J7H4I7", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H4I7", "database": "AlphaFoldDB", "categories": [] }, { "id": "100764914", "url": "https://www.ncbi.nlm.nih.gov/gene/100764914", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR052231", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052231", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR060650", "url": "https://www.ebi.ac.uk/interpro/entry/IPR060650", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR060651", "url": "https://www.ebi.ac.uk/interpro/entry/IPR060651", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100764914", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764914", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H4I7", "url": "https://www.orthodb.org/?gene=A0A9J7H4I7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45845", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45845", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45845:SF2", "url": 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is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: incomplete on the amino end.", "evidence": [ { "database": "RefSeq", "id": "XP_035305408", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305408" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H4J2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4J2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100772906", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4J2", "locus": {} } ], "crossref": [ { "id": "A0A9J7H4J2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H4J2", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100772906", "url": "https://www.ncbi.nlm.nih.gov/gene/100772906", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050169", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050169", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100772906", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772906", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H4J2", "url": "https://www.orthodb.org/?gene=A0A9J7H4J2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23232", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23232", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23232:SF158", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23232:SF158", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035305408", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305408", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H4J2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4J2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H4J2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4J2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "VQWAGPGGAAPRNWLKGPEISPFPVGLGEPRAADPGAEDTAGPRGPETSGSAVSALAGRPGKVSSQQRSGGNRSRAALKAPRFTDHPDLLTCAAEQRGLEGERRQKLKMQGLVTFSDVTVTFSKEEWECMDSAQWNLYTDVMLANYNNLVFVVASTQSQSGVSVQSGPENNPMRKVKNTAVYGAQTVEDRNKQ", "length": 193, "header": "tr|A0A9J7H4J2-1|A0A9J7H4J2_CRIGR Isoform 1 of Zinc finger protein 28 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100772906 PE=4 SV=1 CANONICAL=A0A9J7H4J2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H4J2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4J2/entry#A0A9J7H4J2-1", "sequence": { "sequence": "VQWAGPGGAAPRNWLKGPEISPFPVGLGEPRAADPGAEDTAGPRGPETSGSAVSALAGRPGKVSSQQRSGGNRSRAALKAPRFTDHPDLLTCAAEQRGLEGERRQKLKMQGLVTFSDVTVTFSKEEWECMDSAQWNLYTDVMLANYNNLVFVVASTQSQSGVSVQSGPENNPMRKVKNTAVYGAQTVEDRNKQ", "length": 193, "header": "tr|A0A9J7H4J2-1|A0A9J7H4J2_CRIGR Isoform 1 of Zinc finger protein 28 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100772906 PE=4 SV=1 CANONICAL=A0A9J7H4J2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035302985", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302985" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H4M9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4M9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC118239113", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4M9", "locus": {} } ], "crossref": [ { "id": "A0A9J7H4M9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H4M9", "database": "AlphaFoldDB", "categories": [] }, { "id": "118239113", "url": "https://www.ncbi.nlm.nih.gov/gene/118239113", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001584", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001584", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012337", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012337", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036397", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036397", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040643", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040643", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:118239113", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118239113", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H4M9", "url": "https://www.orthodb.org/?gene=A0A9J7H4M9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR41694", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR41694", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR41694:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR41694:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00665", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00665", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF18697", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18697", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035302985", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035302985", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H4M9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4M9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H4M9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4M9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDPPRAQKAKNPSTTGRTNLLYPQPQCSHPTDHQHLCPCAKVNTGRLKLPEGTRVRGERPGTNWEVDFTESRPGSFGNRYLLVFIDTFSGWTEAFPTKHETAQVVVKKILEEIFPRFGLPKVIGSDNGPAFVSQARLCALQIIQNQIWKPLAAVYQAGNPAVPHPFQIGDSVYIRRHQSKTLEPCWKGPYTVLLTTPTALKVDGIEAWVHASHAKKANTIENWPASPPAAALPPPFPVRARRAGPSAPPPPAPLTEQTFGIAAARARRRAPQGAPLHRARARGDPPGARGEAGAAPAPPAQPCPRGSRSGTGTINMQSGGSAQHCPRAARPGC", "length": 333, "header": "tr|A0A9J7H4M9-1|A0A9J7H4M9_CRIGR Isoform 1 of Translation initiation factor IF-2-like OS=Cricetulus griseus OX=10029 GN=LOC118239113 PE=4 SV=1 CANONICAL=A0A9J7H4M9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H4M9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4M9/entry#A0A9J7H4M9-1", "sequence": { "sequence": "MDPPRAQKAKNPSTTGRTNLLYPQPQCSHPTDHQHLCPCAKVNTGRLKLPEGTRVRGERPGTNWEVDFTESRPGSFGNRYLLVFIDTFSGWTEAFPTKHETAQVVVKKILEEIFPRFGLPKVIGSDNGPAFVSQARLCALQIIQNQIWKPLAAVYQAGNPAVPHPFQIGDSVYIRRHQSKTLEPCWKGPYTVLLTTPTALKVDGIEAWVHASHAKKANTIENWPASPPAAALPPPFPVRARRAGPSAPPPPAPLTEQTFGIAAARARRRAPQGAPLHRARARGDPPGARGEAGAAPAPPAQPCPRGSRSGTGTINMQSGGSAQHCPRAARPGC", "length": 333, "header": "tr|A0A9J7H4M9-1|A0A9J7H4M9_CRIGR Isoform 1 of Translation initiation factor IF-2-like OS=Cricetulus griseus OX=10029 GN=LOC118239113 PE=4 SV=1 CANONICAL=A0A9J7H4M9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H4M9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4M9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H4M9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4M9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:118239113", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118239113", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "RNA-directed DNA polymerase activity", "id": "GO:0003964", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003964", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H4M9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4M9" } ], "pmid": "" }, { "name": "hydrolase activity", "id": "GO:0016787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016787", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H4M9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4M9" } ], "pmid": "" }, { "name": "nucleic acid binding", "id": "GO:0003676", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003676", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H4M9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4M9" } ], "pmid": "" }, { "name": "endonuclease activity", "id": "GO:0004519", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004519", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H4M9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4M9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "DNA integration", "id": "GO:0015074", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015074", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H4M9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4M9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7H4M9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4M9" }, { "id": "PS50994", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50994" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Integrase catalytic", "eco_id": "ECO_0000259", "start_pos": 56, "end_pos": 135, "start_aa": "Arg", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", 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"field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7H4Q7-1", "uniprot_ac": "A0A9J7H4Q7", "uniprot_id": "A0A9J7H4Q7_CRIGR", "mass": { "chemical_mass": 115201.0, "monoisotopic_mass": 115201.0 }, "refseq": { "ac": "XP_035304986", "name": "granule associated Rac and RHOG effector protein 1 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304986" }, "gene_names": [ { "name": "Garre1", "type": "recommended", "evidence": [ { "id": "A0A9J7H4Q7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4Q7" } ] }, { "name": "Garre1", "type": "synonym", "evidence": [ { "id": "XP_035304986", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304986" } ] } ], "protein_names": [ { "name": "Granule associated Rac and RHOG effector protein 1 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7H4Q7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4Q7/entry#names_and_taxonomy" } ] }, { "name": "granule associated Rac and RHOG effector protein 1 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035304986", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304986" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035304986", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304986" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H4Q7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4Q7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Garre1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4Q7", "locus": {} } ], "crossref": [ { "id": "A0A9J7H4Q7", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H4Q7", "database": "AlphaFoldDB", "categories": [] }, { "id": "100764974", "url": "https://www.ncbi.nlm.nih.gov/gene/100764974", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR031813", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031813", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043385", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043385", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100764974", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764974", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H4Q7", "url": "https://www.orthodb.org/?gene=A0A9J7H4Q7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15703", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15703", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15703:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15703:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15923", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15923", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035304986", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304986", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H4Q7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4Q7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H4Q7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4Q7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035305035", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305035" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H4U0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4U0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC118238028", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4U0", "locus": {} } ], "crossref": [ { "id": "A0A9J7H4U0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H4U0", "database": "AlphaFoldDB", "categories": [] }, { "id": "118238028", "url": "https://www.ncbi.nlm.nih.gov/gene/118238028", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:118238028", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118238028", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H4U0", "url": "https://www.orthodb.org/?gene=A0A9J7H4U0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23226", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23226", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23226:SF416", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23226:SF416", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035305035", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305035", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H4U0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4U0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H4U0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4U0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MHQGTRHFIHDHENIQEKYYTFNESAKEIHESCQCTHYGTSNAAENYKNYRFGNHRDASNEALNLDTPKIGNTGKEPYKYKDCGNFLYMCSKISQNQKPHTGKQDYKNTEYETSFESNTETKVKDTDCRKHPHQCMECGKHFKTHSSLTMHQRSHTREKPYKCTKCNESFLQFSQFNVHYRICCRKNPYKCTECGKCFYYLSTFQTHFRIHTGEKPYKCSKCGKSLTTKHNLIIHQRIHTGEKPYKCSECGKSLTTKHNLRNHQRIHTGEKPYKCNECDISLITKHSLIIHQRIHTGEKPYKCSECDRSLTTKRNLRNHQRIHTGEKPYKCSECEKSFSNKDNLRIHQRIHTGEKPYKCSECDKSFYKKDHLRSHQRIHTGEKPYKCGECDKSLTSKRNLRNHQRIHTGEKPYKCSEYDKSFSNKDNLTAHQRIHTGEKP", "length": 440, "header": "tr|A0A9J7H4U0-1|A0A9J7H4U0_CRIGR Isoform 1 of Zinc finger protein 501-like OS=Cricetulus griseus OX=10029 GN=LOC118238028 PE=3 SV=1 CANONICAL=A0A9J7H4U0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H4U0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4U0/entry#A0A9J7H4U0-1", "sequence": { "sequence": "MHQGTRHFIHDHENIQEKYYTFNESAKEIHESCQCTHYGTSNAAENYKNYRFGNHRDASNEALNLDTPKIGNTGKEPYKYKDCGNFLYMCSKISQNQKPHTGKQDYKNTEYETSFESNTETKVKDTDCRKHPHQCMECGKHFKTHSSLTMHQRSHTREKPYKCTKCNESFLQFSQFNVHYRICCRKNPYKCTECGKCFYYLSTFQTHFRIHTGEKPYKCSKCGKSLTTKHNLIIHQRIHTGEKPYKCSECGKSLTTKHNLRNHQRIHTGEKPYKCNECDISLITKHSLIIHQRIHTGEKPYKCSECDRSLTTKRNLRNHQRIHTGEKPYKCSECEKSFSNKDNLRIHQRIHTGEKPYKCSECDKSFYKKDHLRSHQRIHTGEKPYKCGECDKSLTSKRNLRNHQRIHTGEKPYKCSEYDKSFSNKDNLTAHQRIHTGEKP", "length": 440, "header": "tr|A0A9J7H4U0-1|A0A9J7H4U0_CRIGR Isoform 1 of Zinc finger protein 501-like OS=Cricetulus griseus OX=10029 GN=LOC118238028 PE=3 SV=1 CANONICAL=A0A9J7H4U0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"evidence": [ { "database": "UniProtKB", "id": "A0A9J7H4U0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4U0" } ], "pmid": "" }, { "name": "developmental process", "id": "GO:0032502", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032502", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H4U0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4U0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H4U0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4U0" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H4U0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4U0" } ], "pmid": "" }, { "name": "DNA-binding 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104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035305051", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305051" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H4U8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4U8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100755740", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4U8", "locus": {} } ], "crossref": [ { "id": "cd16843", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16843", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100755740", "url": "https://www.ncbi.nlm.nih.gov/gene/100755740", "database": "GeneID", "categories": [ 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"MTVSFTALLCLGLTLGHGTPVLAGTLPKPILRVQPESVVSVQTTVTFLCEGTKGAQXIRLYNNTNQYLTYRETIPNTKNRAEFSISKIAPLDAGRYHCQYWTRDGRSEHSDTLELVVTGAYSKPSLSAHPSPVVTEGGSVTLKCVSRQPYHKFFQTKAGPQKVFWTRNSEFNYSTWQYQAQLRVDALTSSQRWTFRCYSCDSNRPLVWSEPSDPLELLFSGTLHKPTIKAEPGPVIALESAVTIWCQGTLDAEMYVLHKEGSQKPWGTQSPEEPGKRAKFSIPYVTQKHAGQYRCYCYSSAGWTERSDTLEIVVTGMYNSKPSLSALPSPVVTSGGNMTLQCVSRVRYDKLILTKEDEKFSSSLDSQYINNRGHYKATFSMGPVTPVHRGTFRCYGYLKDTPQLWSAPSEPLKIYISGLSKKPSLLTHQGHILDPGKSLTLQCCSDYDRFALYKVGGADFTQHYGQRTQGNFSSATFTLGYVSSSTAGQYRCYGAHNQSSEWSSSSDPLDIMISGQLPDSPSLSVKPNSTVQSGDNVTLLCQSTYTTDTFILSKEGAAHQPQRMKSKSQDGEFQAEFSMTAVTSALSGTYRCYSSRGSYPYLLSHASGPVELSVSASEIKDYTVENLIRMGLAVLVLKVLGILVLESWRSQKQSHHVAET", "length": 660, "header": "tr|A0A9J7H4U8-1|A0A9J7H4U8_CRIGR Isoform 1 of LOW QUALITY PROTEIN: leukocyte immunoglobulin-like receptor subfamily B member 3 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100755740 PE=4 SV=1 CANONICAL=A0A9J7H4U8-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H4U8-1", "url": 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This record is derived from a genomic sequence (NW_003613637.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035293697", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035293697" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H4X2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4X2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Fancd2os", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4X2", "locus": {} } ], "crossref": [ { "id": "A0A9J7H4X2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H4X2", "database": "AlphaFoldDB", "categories": [] }, { "id": "100758053", "url": "https://www.ncbi.nlm.nih.gov/gene/100758053", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR027966", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027966", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100758053", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758053", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H4X2", "url": "https://www.orthodb.org/?gene=A0A9J7H4X2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31036", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31036", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31036:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31036:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15124", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15124", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035293697", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035293697", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H4X2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4X2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H4X2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4X2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSDSFPLGLSMAGYQLWSPWTPLDESFQWLRHTTPTPCSKHPFRASPCFPHTPSDLEVQLCFQEVTLVLDSPLVAPGESPKLPCHTSELRAVNNKKGLVRKPQPVRLNGVDSVFGRVITAQPPKWTGTFRVSDKSAFCKIISREHQWPTGLKEPQIQMTVTMCKQMLRSILLLYATYKKCTFALQHSK", "length": 188, "header": "tr|A0A9J7H4X2-1|A0A9J7H4X2_CRIGR Isoform 1 of FANCD2 opposite strand protein OS=Cricetulus griseus OX=10029 GN=Fancd2os PE=4 SV=1 CANONICAL=A0A9J7H4X2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H4X2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4X2/entry#A0A9J7H4X2-1", "sequence": { "sequence": "MSDSFPLGLSMAGYQLWSPWTPLDESFQWLRHTTPTPCSKHPFRASPCFPHTPSDLEVQLCFQEVTLVLDSPLVAPGESPKLPCHTSELRAVNNKKGLVRKPQPVRLNGVDSVFGRVITAQPPKWTGTFRVSDKSAFCKIISREHQWPTGLKEPQIQMTVTMCKQMLRSILLLYATYKKCTFALQHSK", "length": 188, "header": "tr|A0A9J7H4X2-1|A0A9J7H4X2_CRIGR Isoform 1 of FANCD2 opposite strand protein OS=Cricetulus griseus OX=10029 GN=Fancd2os PE=4 SV=1 CANONICAL=A0A9J7H4X2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"https://www.ncbi.nlm.nih.gov/protein/XP_035304916", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H4Z2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4Z2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H4Z2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4Z2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAVLPSMRLLVSPLPAPSPACWARSPASAPASPVPAVRSAPRLPSRTPHPEPPRLRSPSPAAPVRIPLPPEPGASCSSWEEAARLARFPRPPRQPEVGGERAAGQQPREPLRGQCTGAGPPRALSSAPPLPPPPAARCSPFFLRGGSSRGRRGSGDSSTSTSXQRGGGGGRRXGGGGSPSSSTGXEREDDDESISISKPLVPAAATPGPPAQGGAPAAPAAAAAAPATAPHVTATSSSCXMTAATSAPAAAGAVGGPRARRGAGGGSGSGGGASAARAAAAAAAAAAGRPGRRGRRRHGCSSSSPGCHWGYQALSVVLLLAQGGLLDLYLIAVTDLYWCSWIATDLVVVVGWAIFFAKNSRGRRGGPASSAHSHHQLHHSAPPPPPPPPPPPPPPPLHLPAGASAGRGQGSRGRGGSGSSGAGPGTAGAAGEFAFAYLAWLIYSIAFTPKVVLILGTSILDLIELRAPFGTTGFRLTMALSVPLLYSLVRAISEAGSPPGSAGPLLLQPQQHRAAGCFLGTCLDLLDSFTLVELMLDGRVPLPAHLRYLLIAVYFLTLASPVLWLYELNTTAAAAPSWGQASGPGSCSRLLRLLGGCLVDVPLLALRSLLVVSYQQPLSIFMLKNLFFLGCRGLEALEGCWDRGSWVSPSRARNSYGAPPSAPPPPPPQPPQGGSQRGHLENEGGPHGYVNTLAVASQN", "length": 699, "header": "tr|A0A9J7H4Z2-1|A0A9J7H4Z2_CRIGR Isoform 1 of LOW QUALITY PROTEIN: transmembrane protein 121B-like OS=Cricetulus griseus OX=10029 GN=LOC113837055 PE=3 SV=1 CANONICAL=A0A9J7H4Z2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H4Z2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4Z2/entry#A0A9J7H4Z2-1", "sequence": { "sequence": "MAVLPSMRLLVSPLPAPSPACWARSPASAPASPVPAVRSAPRLPSRTPHPEPPRLRSPSPAAPVRIPLPPEPGASCSSWEEAARLARFPRPPRQPEVGGERAAGQQPREPLRGQCTGAGPPRALSSAPPLPPPPAARCSPFFLRGGSSRGRRGSGDSSTSTSXQRGGGGGRRXGGGGSPSSSTGXEREDDDESISISKPLVPAAATPGPPAQGGAPAAPAAAAAAPATAPHVTATSSSCXMTAATSAPAAAGAVGGPRARRGAGGGSGSGGGASAARAAAAAAAAAAGRPGRRGRRRHGCSSSSPGCHWGYQALSVVLLLAQGGLLDLYLIAVTDLYWCSWIATDLVVVVGWAIFFAKNSRGRRGGPASSAHSHHQLHHSAPPPPPPPPPPPPPPPLHLPAGASAGRGQGSRGRGGSGSSGAGPGTAGAAGEFAFAYLAWLIYSIAFTPKVVLILGTSILDLIELRAPFGTTGFRLTMALSVPLLYSLVRAISEAGSPPGSAGPLLLQPQQHRAAGCFLGTCLDLLDSFTLVELMLDGRVPLPAHLRYLLIAVYFLTLASPVLWLYELNTTAAAAPSWGQASGPGSCSRLLRLLGGCLVDVPLLALRSLLVVSYQQPLSIFMLKNLFFLGCRGLEALEGCWDRGSWVSPSRARNSYGAPPSAPPPPPPQPPQGGSQRGHLENEGGPHGYVNTLAVASQN", "length": 699, "header": "tr|A0A9J7H4Z2-1|A0A9J7H4Z2_CRIGR Isoform 1 of LOW QUALITY PROTEIN: transmembrane protein 121B-like OS=Cricetulus griseus OX=10029 GN=LOC113837055 PE=3 SV=1 CANONICAL=A0A9J7H4Z2-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 206, "start_aa": "Thr", "end_pos": 206, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr206", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H4Z2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4Z2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:113837055", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113837055", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 569, "end_pos": 571, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 206 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 569, "end_pos": 571 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7H4Z4-1", "uniprot_ac": "A0A9J7H4Z4", "uniprot_id": "A0A9J7H4Z4_CRIGR", "mass": { "chemical_mass": 36515.0, "monoisotopic_mass": 36515.0 }, "refseq": { "ac": "XP_035305623", "name": "uncharacterized protein LOC113837508", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305623" }, "gene_names": [ { "name": "LOC113837508", "type": "recommended", "evidence": [ { "id": "A0A9J7H4Z4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4Z4" } ] }, { "name": "LOC113837508", "type": "synonym", "evidence": [ { "id": "XP_035305623", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305623" } ] } ], "protein_names": [ { "name": "Uncharacterized protein LOC113837508", "type": "synonym", "evidence": [ { "id": "A0A9J7H4Z4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4Z4/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein LOC113837508", "type": "synonym", "evidence": [ { "id": "XP_035305623", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305623" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 30% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048604.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035305623", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305623" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H4Z4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4Z4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113837508", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4Z4", "locus": {} } ], "crossref": [ { "id": "A0A9J7H4Z4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H4Z4", "database": "AlphaFoldDB", "categories": [] }, { "id": "113837508", "url": "https://www.ncbi.nlm.nih.gov/gene/113837508", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003036", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003036", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008919", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008919", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040643", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040643", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050462", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050462", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113837508", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113837508", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H4Z4", "url": "https://www.orthodb.org/?gene=A0A9J7H4Z4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR33166", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33166", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02093", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02093", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF18697", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18697", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035305623", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305623", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H4Z4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4Z4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H4Z4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4Z4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDLSGVKSISPWLPSQLIPANQRTESGSGSGSSRNAKQRLLKGTEAKFLVRPRRESEGHLEEGEETKSHFSGEAAAPDFASLPLCTGLAPPVYRATNYPPFSQDPQALTGLIESILITHQPTWDDCQQLLQTLLTTEERQRVLLEAWKNVPGPDGRPTQLPNEIDEVFPLTRPTDWDINTAASRERHRLYRQTLLAGLKGAGRRPTNLAKARLRALQIIQNQIWKPLAAVYQAGNPAVPHPFQIGDSVYIRRHQSKTLETRWKGPYTVLLTTPTALKVDGIAAWVHASHAKKANTSENWVTNETPKWKLQRTQNPLKDSRTHLSISC", "length": 327, "header": "tr|A0A9J7H4Z4-1|A0A9J7H4Z4_CRIGR Isoform 1 of Uncharacterized protein LOC113837508 OS=Cricetulus griseus OX=10029 GN=LOC113837508 PE=4 SV=1 CANONICAL=A0A9J7H4Z4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H4Z4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4Z4/entry#A0A9J7H4Z4-1", "sequence": { "sequence": "MDLSGVKSISPWLPSQLIPANQRTESGSGSGSSRNAKQRLLKGTEAKFLVRPRRESEGHLEEGEETKSHFSGEAAAPDFASLPLCTGLAPPVYRATNYPPFSQDPQALTGLIESILITHQPTWDDCQQLLQTLLTTEERQRVLLEAWKNVPGPDGRPTQLPNEIDEVFPLTRPTDWDINTAASRERHRLYRQTLLAGLKGAGRRPTNLAKARLRALQIIQNQIWKPLAAVYQAGNPAVPHPFQIGDSVYIRRHQSKTLETRWKGPYTVLLTTPTALKVDGIAAWVHASHAKKANTSENWVTNETPKWKLQRTQNPLKDSRTHLSISC", "length": 327, "header": "tr|A0A9J7H4Z4-1|A0A9J7H4Z4_CRIGR Isoform 1 of Uncharacterized protein LOC113837508 OS=Cricetulus griseus OX=10029 GN=LOC113837508 PE=4 SV=1 CANONICAL=A0A9J7H4Z4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H4Z4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4Z4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035308763", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308763" } ] }, { "annotation": "Component of SEC61 channel-forming translocon complex that mediates transport of signal peptide-containing precursor polypeptides across the endoplasmic reticulum (ER). Forms a ribosome receptor and a gated pore in the ER membrane, both functions required for cotranslational translocation of nascent polypeptides. The SEC61 channel is also involved in ER membrane insertion of transmembrane proteins: it mediates membrane insertion of the first few transmembrane segments of proteins, while insertion of subsequent transmembrane regions of multi-pass membrane proteins is mediated by the multi-pass translocon (MPT) complex. The SEC61 channel cooperates with the translocating protein TRAM1 to import nascent proteins into the ER.", "evidence": [ { "database": "UniProtKB", "id": "G3HEF5", "url": "https://www.uniprot.org/uniprotkb/G3HEF5#function" }, { "database": "UniProtKB", "id": "ARBA00056173", "url": "https://www.uniprot.org/uniprotkb/ARBA00056173#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HB11", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HB11" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Sec61g", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HB11", "locus": {} } ], "crossref": [ { "id": "A0A9J7HB11", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HB11", "database": "AlphaFoldDB", "categories": [] }, { "id": "100772250", "url": "https://www.ncbi.nlm.nih.gov/gene/100772250", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001901", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001901", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008158", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008158", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023391", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023391", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100772250", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772250", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KPDQKEY", "url": "https://omabrowser.org/oma/group/KPDQKEY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7HB11", "url": "https://www.orthodb.org/?gene=A0A9J7HB11", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3HEF5", "url": "https://www.orthodb.org/?gene=G3HEF5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12309", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12309", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00584", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00584", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035308763", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308763", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HB11", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HB11", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HB11-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HB11-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HEF5", "url": "https://www.uniprot.org/uniprotkb/G3HEF5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HEF5-1", "url": "https://www.uniprot.org/uniprotkb/G3HEF5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSGPGNDGNEGWGEGATVLTGCRDEGEGAIDEPGGHELRPGSCRIRTSPLGWIADGQVDRDQIQAQDLPVWPQVEVSSQTCLEELSTMDQVMQFVEPSRQFVKDSIRLVKRCTKPDRKGLGTNSVIKCC", "length": 129, "header": "tr|A0A9J7HB11-1|A0A9J7HB11_CRIGR Isoform 1 of Protein transport protein Sec61 subunit gamma isoform X2 OS=Cricetulus griseus OX=10029 GN=Sec61g PE=4 SV=1 CANONICAL=A0A9J7HB11-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HB11-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HB11/entry#A0A9J7HB11-1", "sequence": { "sequence": "MSGPGNDGNEGWGEGATVLTGCRDEGEGAIDEPGGHELRPGSCRIRTSPLGWIADGQVDRDQIQAQDLPVWPQVEVSSQTCLEELSTMDQVMQFVEPSRQFVKDSIRLVKRCTKPDRKGLGTNSVIKCC", "length": 129, "header": "tr|A0A9J7HB11-1|A0A9J7HB11_CRIGR Isoform 1 of Protein transport protein Sec61 subunit gamma isoform X2 OS=Cricetulus griseus OX=10029 GN=Sec61g PE=4 SV=1 CANONICAL=A0A9J7HB11-1" }, "locus": {} }, { "isoform_ac": "G3HEF5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HB11/entry#G3HEF5-1", "sequence": { "sequence": "MDQVMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIPINNIIVGG", "length": 68, "header": "tr|G3HEF5-1|A0A9J7HB11_CRIGR Computationally mapped isoform of Protein transport protein Sec61 subunit gamma isoform X2 OS=Cricetulus griseus OX=10029 GN=Sec61g PE=4 SV=1 CANONICAL=A0A9J7HB11-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HEF5", "url": "https://www.uniprot.org/uniprotkb/G3HEF5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HEF5", "url": "https://www.uniprot.org/uniprotkb/G3HEF5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100772250", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772250", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8J8XD56-1", "protein_name": "Protein transport protein Sec61 subunit gamma", "gene_name": "Sec61gl4", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "VGGLLTGFRFRWAQFSPRLRVSALSNRHPTNMDQVMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIPINNIIVGG", "length": 99 }, "evidence": [ { "id": "A0A9J7HB11", "url": "https://omabrowser.org/oma/group/A0A9J7HB11/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A8V0XUS1-1", "protein_name": "Protein transport protein Sec61 subunit gamma", "gene_name": "SEC61G", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MDQVMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIPINNIIV", "length": 66 }, "evidence": [ { "id": "A0A9J7HB11", "url": "https://omabrowser.org/oma/group/A0A9J7HB11/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "F2Z4R1-1", "protein_name": "Protein transport protein Sec61 subunit gamma", "gene_name": "sec61g", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MDQVMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIPINNIIVGG", "length": 68 }, "evidence": [ { "id": "A0A9J7HB11", "url": "https://omabrowser.org/oma/group/A0A9J7HB11/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "P0DI74-1", "protein_name": "Protein transport protein Sec61 subunit gamma-1", "gene_name": "SEC61G1", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGAT", "length": 69 }, "evidence": [ { "id": "A0A9J7HB11", "url": "https://omabrowser.org/oma/group/A0A9J7HB11/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P0DI75-1", "protein_name": "Protein transport protein Sec61 subunit gamma-2", "gene_name": "SEC61G2", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGAT", "length": 69 }, "evidence": [ { "id": "A0A9J7HB11", "url": "https://omabrowser.org/oma/group/A0A9J7HB11/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" }, { "uniprot_canonical_ac": "P35179-1", "protein_name": "Protein transport protein SSS1", "gene_name": "SSS1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MARASEKGEEKKQSNNQVEKLVEAPVEFVREGTQFLAKCKKPDLKEYTKIVKAVGIGFIAVGIIGYAIKLIHIPIRYVIV", "length": 80 }, "evidence": [ { "id": "A0A9J7HB11", "url": "https://omabrowser.org/oma/group/A0A9J7HB11/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "P60059-1", "protein_name": "Protein transport protein Sec61 subunit gamma", "gene_name": "SEC61G", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDQVMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIPINNIIVGG", "length": 68 }, "evidence": [ { "id": "A0A9J7HB11", "url": "https://omabrowser.org/oma/group/A0A9J7HB11/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P60060-1", "protein_name": "Protein transport protein Sec61 subunit gamma", "gene_name": "Sec61g", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDQVMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIPINNIIVGG", "length": 68 }, "evidence": [ { "id": "A0A9J7HB11", "url": "https://omabrowser.org/oma/group/A0A9J7HB11/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q3T104-1", "protein_name": "Protein transport protein Sec61 subunit gamma", "gene_name": "SEC61G", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MDQVMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVKLIHIPINNIIVGG", "length": 68 }, "evidence": [ { "id": "A0A9J7HB11", "url": "https://omabrowser.org/oma/group/A0A9J7HB11/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q54JV6-1", "protein_name": "Protein transport protein Sec61 subunit gamma", "gene_name": "sec61g", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MDILEETAAPLKDFAKNSIRLFKKCTKPDAQEFQKIALATLIGFAIMGFIGFFVKLIHIPINNILVGGV", "length": 69 }, "evidence": [ { "id": "A0A9J7HB11", "url": "https://omabrowser.org/oma/group/A0A9J7HB11/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q9V668-1", "protein_name": "Protein transport protein Sec61 gamma-1 subunit", "gene_name": "SEC61G1", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MDKVVKFAEPGRAFAKDSIRLVKRCTKPDRKEFQKIAIATAVGFAIMGFIGFFVKLIHIPINNIIVGS", "length": 68 }, "evidence": [ { "id": "A0A9J7HB11", "url": "https://omabrowser.org/oma/group/A0A9J7HB11/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "intracellular protein transport", "id": "GO:0006886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HB11", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HB11" } ], "pmid": 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8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614095.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003504899", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003504899" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H9D2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9D2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Abhd18", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9D2", "locus": {} } ], "crossref": [ { "id": "100772269", "url": "https://www.ncbi.nlm.nih.gov/gene/100772269", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019149", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019149", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029058", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029058", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100772269", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772269", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H9D2", "url": "https://www.orthodb.org/?gene=A0A9J7H9D2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7J705", "url": "https://www.orthodb.org/?gene=A0A9J7J705", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3HMK7", "url": "https://www.orthodb.org/?gene=G3HMK7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13617", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13617", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13617:SF14", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13617:SF14", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF09752", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09752", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003504899", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003504899", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H9D2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9D2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H9D2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9D2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J705", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J705", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J705-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J705-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HMK7", "url": "https://www.uniprot.org/uniprotkb/G3HMK7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HMK7-1", "url": "https://www.uniprot.org/uniprotkb/G3HMK7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGVSKLDILYRRLLLTKLFIRGWGRPEDLKRLFEFRKMIGNRERCQNLVSSDYPVHIDKVEEQSDCKILDGHFVSPMAHYVPGIMPIESVIARFQFIVPKEWNSRYRPVCIHLAGTGDHHYWRRRTLMARPMIKEARMASLLLENPYYGCRKPKDQVRSSLKNVSDLFVMGGALILESAALLHWLEREGYGPLGMTGISMGGHMASLAVSNWPKPMPLIPCLSWSTASGVFTTGVLSKSINWRELEKQYYTQTVYEEEIIHMLEYCGADSFKMGHEFMKHFPSRADKLTNLNLVSRKLNLDMTDQVVPPNAKCHNSGKTSISATSKGHLLQDPAKTECLNQTLSTNTSHYASYNPQSCHLLSREQKRSNLQRESLIFMKGVMDECTHVANFSVPVDPSLIIVVQAKEDAYIPRTGVRSLQEIWPGCEIRYLEGGHISAYLFKQGLFRQAIYDAFERFLHKYAN", "length": 463, "header": "tr|A0A9J7H9D2-1|A0A9J7H9D2_CRIGR Isoform 1 of Protein ABHD18 isoform X1 OS=Cricetulus griseus OX=10029 GN=Abhd18 PE=4 SV=1 CANONICAL=A0A9J7H9D2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H9D2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9D2/entry#A0A9J7H9D2-1", "sequence": { "sequence": "MGVSKLDILYRRLLLTKLFIRGWGRPEDLKRLFEFRKMIGNRERCQNLVSSDYPVHIDKVEEQSDCKILDGHFVSPMAHYVPGIMPIESVIARFQFIVPKEWNSRYRPVCIHLAGTGDHHYWRRRTLMARPMIKEARMASLLLENPYYGCRKPKDQVRSSLKNVSDLFVMGGALILESAALLHWLEREGYGPLGMTGISMGGHMASLAVSNWPKPMPLIPCLSWSTASGVFTTGVLSKSINWRELEKQYYTQTVYEEEIIHMLEYCGADSFKMGHEFMKHFPSRADKLTNLNLVSRKLNLDMTDQVVPPNAKCHNSGKTSISATSKGHLLQDPAKTECLNQTLSTNTSHYASYNPQSCHLLSREQKRSNLQRESLIFMKGVMDECTHVANFSVPVDPSLIIVVQAKEDAYIPRTGVRSLQEIWPGCEIRYLEGGHISAYLFKQGLFRQAIYDAFERFLHKYAN", "length": 463, "header": "tr|A0A9J7H9D2-1|A0A9J7H9D2_CRIGR Isoform 1 of Protein ABHD18 isoform X1 OS=Cricetulus griseus OX=10029 GN=Abhd18 PE=4 SV=1 CANONICAL=A0A9J7H9D2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J705-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9D2/entry#A0A9J7J705-1", "sequence": { "sequence": "MAHYVPGIMPIESVIARFQFIVPKEWNSRYRPVCIHLAGTGDHHYWRRRTLMARPMIKEARMASLLLENPYYGCRKPKDQVRSSLKNVSDLFVMGGALILESAALLHWLEREGYGPLGMTGISMGGHMASLAVSNWPKPMPLIPCLSWSTASGVFTTGVLSKSINWRELEKQYYTQTVYEEEIIHMLEYCGADSFKMGHEFMKHFPSRADKLTNLNLVSRKLNLDMTDQVVPPNAKCHNSGKTSISATSKGHLLQDPAKTECLNQTLSTNTSHYASYNPQSCHLLSREQKRSNLQRESLIFMKGVMDECTHVANFSVPVDPSLIIVVQAKEDAYIPRTGVRSLQEIWPGCEIRYLEGGHISAYLFKQGLFRQAIYDAFERFLHKYAN", "length": 387, "header": "tr|A0A9J7J705-1|A0A9J7J705_CRIGR Computationally mapped isoform of Protein ABHD18 isoform X2 OS=Cricetulus griseus OX=10029 GN=Abhd18 PE=4 SV=1 CANONICAL=A0A9J7H9D2-1" }, "locus": {} }, { "isoform_ac": "G3HMK7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9D2/entry#G3HMK7-1", "sequence": { "sequence": "MGGALILESAALLHWLEREGYGPLGMTGISMGGHMASLAVSNWPKPMPLIPCLSWSTASGVFTTGVLSKSINWRELEKQYYTQTVYEEEIIHMLEYCGADSFKMGHEFMKHFPSRADKLTNLNLVSRKLNLDMTDQVVPPNAKCHNSGKTSISATSKGHLLQDPAKTECLNQTLSTNTSHYASYNPQSCHLLSREQKRSNLQRESLIFMKGVMDECTHVANFSVPVDPSLIIVVQAKEDAYIPRTGVRSLQEIWPGCEIRYLEGGHISAYLFKQGLFRQAIYDAFERFLHKYAN", "length": 294, "header": "tr|G3HMK7-1|A0A9J7H9D2_CRIGR Computationally mapped isoform of Protein ABHD18 isoform X1 OS=Cricetulus griseus OX=10029 GN=Abhd18 PE=4 SV=1 CANONICAL=A0A9J7H9D2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HMK7", "url": "https://www.uniprot.org/uniprotkb/G3HMK7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HMK7", "url": "https://www.uniprot.org/uniprotkb/G3HMK7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100772269", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772269", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 163, "end_pos": 165, "annotation": "n_glycosylation_sequon" }, { "start_pos": 340, "end_pos": 342, "annotation": "n_glycosylation_sequon" }, { "start_pos": 346, "end_pos": 348, "annotation": "n_glycosylation_sequon" }, { "start_pos": 390, "end_pos": 392, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 163, "end_pos": 165 }, { "start_pos": 340, "end_pos": 342 }, { "start_pos": 346, "end_pos": 348 }, { "start_pos": 390, "end_pos": 392 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7H974-1", "uniprot_ac": "A0A9J7H974", "uniprot_id": "A0A9J7H974_CRIGR", "mass": { "chemical_mass": 60193.0, "monoisotopic_mass": 60193.0 }, "refseq": { "ac": "XP_035305593", "name": "WD repeat-containing protein 13 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305593" }, "gene_names": [ { "name": "Wdr13", "type": "recommended", "evidence": [ { "id": "A0A9J7H974", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H974" } ] }, { "name": "Wdr13", "type": "synonym", "evidence": [ { "id": "XP_035305593", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305593" } ] } ], "protein_names": [ { "name": "WD repeat-containing protein 13 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_035305593", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305593" }, { "id": "A0A9J7H974", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H974/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048604.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035305593", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305593" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H974", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H974" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Wdr13", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H974", "locus": {} } ], "crossref": [ { "id": "A0A9J7H974", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H974", "database": "AlphaFoldDB", "categories": [] }, { "id": "100765056", "url": "https://www.ncbi.nlm.nih.gov/gene/100765056", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051350", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051350", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100765056", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765056", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MLKFANN", "url": "https://omabrowser.org/oma/group/MLKFANN/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7GKU0", "url": "https://www.orthodb.org/?gene=A0A9J7GKU0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7H974", "url": "https://www.orthodb.org/?gene=A0A9J7H974", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3HND8", "url": "https://www.orthodb.org/?gene=G3HND8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22838", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22838", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22838:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22838:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00400", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00400", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035305593", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305593", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GKU0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKU0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GKU0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKU0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H960", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H960", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H960-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H960-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H974", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H974", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H974-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H974-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KD80", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD80", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KD80-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KD80-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HND8", "url": "https://www.uniprot.org/uniprotkb/G3HND8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HND8-1", "url": "https://www.uniprot.org/uniprotkb/G3HND8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAISEAGRRTWLVRLREHAQFPWCGIFPRRSGPAREVAKEHAWKMRLDIDMRKENVFGYNAYRTPTFPQFRTQYIRRRSQLLRENAKAGHPPALRRQYLRLRGQLLGQRYGPLSEPGSARAYSNSIVRSSRTTLDRMEDFEDDPRALGARGHRRSVSRGSYQLQAQMNRAVYEDRPPGSVVPTSVAEASRAMAGDTSLSENYAFAGMYHVFDQHVDEAVPRVRFANDDRHRLACCSLDGSISLCQLVPAPPTVLHVLRGHTRGVSDFAWSLSNDILVSTSLDATMRIWASEDGRCIREIPDPDGAELLCCTFQPVNNNLTVVRLQDTCSPRVGNAKNNVHVMNISTGKKVKGGSSKLTGRVLALSFDAPGRLLWAGDDRGSIFSFLFDMATGKLTKAKRLVVHEGSPITSISARSWVSREARDPSLLINACLNKLLLYRVVDNEGTLQLKRSFPIEQSSHPVRSIFCPLMSFRQGACVVTGSEDMCVHFFDVERAAKAAVNKLQGHSAPVLDVSFNCDESLLASSDASGMVIVWRREQK", "length": 539, "header": "tr|A0A9J7H974-1|A0A9J7H974_CRIGR Isoform 1 of WD repeat-containing protein 13 isoform X1 OS=Cricetulus griseus OX=10029 GN=Wdr13 PE=4 SV=1 CANONICAL=A0A9J7H974-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GKU0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H974/entry#A0A9J7GKU0-1", "sequence": { "sequence": "MAISEAGRRTWLVRLREHAQFPWCGIFPRRSGPAREVAKEHAWKMRLDIDMRKENVFGYNAYRTPTFPQFRTQYIRRRSQLLRENAKAGHPPALRRQYLRLRGQLLGQRYGPLSEPGSARAYSNSIVRSSRTTLDRMEDFEDDPRALGARGHRRSVSRGSYQLQAQMNRAVYEDRPPGSVVPTSVAEASRAMAGDTSLSENYAFAGMYHVFDQHVDEAVPRVRFANDDRHRLACCSLDGSISLCQLVPAPPTVLHVLRGHTRGVSDFAWSLSNDILVSTSLDATMRIWASEDGRCIREIPDPDGAELLCCTFQPVNNNLTVVGNAKNNVHVMNISTGKKVKGGSSKLTGRVLALSFDAPGRLLWAGDDRGSIFSFLFDMATGKLTKAKRLVVHEGSPITSISARSWVSREARDPSLLINACLNKLLLYRVVDNEGTLQLKRSFPIEQSSHPVRSIFCPLMSFRQGACVVTGSEDMCVHFFDVERAAKAAVNKLQGHSAPVLDVSFNCDESLLASSDASGMVIVWRREQK", "length": 529, "header": "tr|A0A9J7GKU0-1|A0A9J7H974_CRIGR Computationally mapped isoform of WD repeat-containing protein 13 isoform X1 OS=Cricetulus griseus OX=10029 GN=Wdr13 PE=4 SV=1 CANONICAL=A0A9J7H974-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H960-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H974/entry#A0A9J7H960-1", "sequence": { "sequence": "MAAVWQQVLAVDARYNAYRTPTFPQFRTQYIRRRSQLLRENAKAGHPPALRRQYLRLRGQLLGQRYGPLSEPGSARAYSNSIVRSSRTTLDRMEDFEDDPRALGARGHRRSVSRGSYQLQAQMNRAVYEDRPPGSVVPTSVAEASRAMAGDTSLSENYAFAGMYHVFDQHVDEAVPRVRFANDDRHRLACCSLDGSISLCQLVPAPPTVLHVLRGHTRGVSDFAWSLSNDILVSTSLDATMRIWASEDGRCIREIPDPDGAELLCCTFQPVNNNLTVVRLQDTCSPRVGNAKNNVHVMNISTGKKVKGGSSKLTGRVLALSFDAPGRLLWAGDDRGSIFSFLFDMATGKLTKAKRLVVHEGSPITSISARSWVSREARDPSLLINACLNKLLLYRVVDNEGTLQLKRSFPIEQSSHPVRSIFCPLMSFRQGACVVTGSEDMCVHFFDVERAAKAAVNKLQGHSAPVLDVSFNCDESLLASSDASGMVIVWRREQK", "length": 495, "header": "tr|A0A9J7H960-1|A0A9J7H960_CRIGR Computationally mapped isoform of WD repeat-containing protein 13 isoform X4 OS=Cricetulus griseus OX=10029 GN=Wdr13 PE=4 SV=1 CANONICAL=A0A9J7H974-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H974-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H974/entry#A0A9J7H974-1", "sequence": { "sequence": "MAISEAGRRTWLVRLREHAQFPWCGIFPRRSGPAREVAKEHAWKMRLDIDMRKENVFGYNAYRTPTFPQFRTQYIRRRSQLLRENAKAGHPPALRRQYLRLRGQLLGQRYGPLSEPGSARAYSNSIVRSSRTTLDRMEDFEDDPRALGARGHRRSVSRGSYQLQAQMNRAVYEDRPPGSVVPTSVAEASRAMAGDTSLSENYAFAGMYHVFDQHVDEAVPRVRFANDDRHRLACCSLDGSISLCQLVPAPPTVLHVLRGHTRGVSDFAWSLSNDILVSTSLDATMRIWASEDGRCIREIPDPDGAELLCCTFQPVNNNLTVVRLQDTCSPRVGNAKNNVHVMNISTGKKVKGGSSKLTGRVLALSFDAPGRLLWAGDDRGSIFSFLFDMATGKLTKAKRLVVHEGSPITSISARSWVSREARDPSLLINACLNKLLLYRVVDNEGTLQLKRSFPIEQSSHPVRSIFCPLMSFRQGACVVTGSEDMCVHFFDVERAAKAAVNKLQGHSAPVLDVSFNCDESLLASSDASGMVIVWRREQK", "length": 539, "header": "tr|A0A9J7H974-1|A0A9J7H974_CRIGR Isoform 1 of WD repeat-containing protein 13 isoform X1 OS=Cricetulus griseus OX=10029 GN=Wdr13 PE=4 SV=1 CANONICAL=A0A9J7H974-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KD80-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H974/entry#A0A9J7KD80-1", "sequence": { "sequence": "MAAVWQQVLAVDARITPTTVPGGIPLYHWYNAYRTPTFPQFRTQYIRRRSQLLRENAKAGHPPALRRQYLRLRGQLLGQRYGPLSEPGSARAYSNSIVRSSRTTLDRMEDFEDDPRALGARGHRRSVSRGSYQLQAQMNRAVYEDRPPGSVVPTSVAEASRAMAGDTSLSENYAFAGMYHVFDQHVDEAVPRVRFANDDRHRLACCSLDGSISLCQLVPAPPTVLHVLRGHTRGVSDFAWSLSNDILVSTSLDATMRIWASEDGRCIREIPDPDGAELLCCTFQPVNNNLTVVRLQDTCSPRVGNAKNNVHVMNISTGKKVKGGSSKLTGRVLALSFDAPGRLLWAGDDRGSIFSFLFDMATGKLTKAKRLVVHEGSPITSISARSWVSREARDPSLLINACLNKLLLYRVVDNEGTLQLKRSFPIEQSSHPVRSIFCPLMSFRQGACVVTGSEDMCVHFFDVERAAKAAVNKLQGHSAPVLDVSFNCDESLLASSDASGMVIVWRREQK", "length": 510, "header": "tr|A0A9J7KD80-1|A0A9J7H974_CRIGR Computationally mapped isoform of WD repeat-containing protein 13 isoform X1 OS=Cricetulus griseus OX=10029 GN=Wdr13 PE=4 SV=1 CANONICAL=A0A9J7H974-1" }, "locus": {} }, { "isoform_ac": "G3HND8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H974/entry#G3HND8-1", "sequence": { "sequence": "MAAVWQQVLAVDARYNAYRTPTFPQFRTQYIRRRSQLLRENAKAGHPPALRRQYLRLRGQLLGQRYGPLSEPGSARAYSNSIVRSSRTTLDRMEDFEDDPRALGARGHRRSVSRGSYQLQAQMNRAVYEDRPPGSVVPTSVAEASRAMAGDTSLSENYAFAGMYHVFDQHVDEAVPRVRFANDDRHRLACCSLDGSISLCQLVPAPPTVLHVLRGHTRGVSDFAWSLSNDILVSTSLDATMRIWASEDGRCIREIPDPDGAELLCCTFQPVNNNLTVVGNAKNNVHVMNISTGKKVKGGSSKLTGRVLALSFDAPGRLLWAGDDRGSIFSFLFDMATGKLTKAKRLVVHEGSPITSISARSWVSREARDPSLLINACLNKLLLYRVVDNEGTLQLKRSFPIEQSSHPVRSIFCPLMSFRQGACVVTGSEDMCVHFFDVERAAKAAVNKLQGHSAPVLDVSFNCDESLLASSDASGMVIVWRREQK", "length": 485, "header": "tr|G3HND8-1|A0A9J7H974_CRIGR Computationally mapped isoform of WD repeat-containing protein 13 isoform X1 OS=Cricetulus griseus OX=10029 GN=Wdr13 PE=4 SV=1 CANONICAL=A0A9J7H974-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HND8", "url": "https://www.uniprot.org/uniprotkb/G3HND8" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HND8", "url": "https://www.uniprot.org/uniprotkb/G3HND8" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100765056", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765056", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "G3V6Q3-1", "protein_name": "WD repeat-containing protein 13", "gene_name": "Wdr13", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRFEMDMRKETVFGYNAYRTPTFPQFRTQYIRRRSQLLRENAKAGHPPALRRQYLRLRGQLLGQRYGPLSEPGSARAYSNSIVRSSRTTLDRMEDFEDDPRALGARGHRRSVSRGSYQLQAQMNRAVYEDRPPGSVVPTSVAEASRAMAGDTSLSENYAFAGMYHVFDQHVDEAVPRVRFANDDRHRLACCSLDGSISLCQLVPAPPTVLHVLRGHTRGVSDFAWSLSNDILVSTSLDATMRIWASEDGRCIREIPDPDGAELLCCTFQPVNNNLTVVGNAKHNVHVMNISTGKKVKGGSSKLTGRVLALSFDAPGRLLWAGDDRGSVFSFLFDMATGKLTKAKRLVVHEGSPVTSISARSWVSREARDPSLLINACLNKLLLYRVVDNEGALQLKRSFPIEQSSHPVRSIFCPLMSFRQGACVVTGSEDMCVHFFDVERAAKAAVNKLQGHSAPVLDVSFNCDESLLASSDASGMVIVWRREQK", "length": 485 }, "evidence": [ { "id": "A0A9J7H974", "url": "https://omabrowser.org/oma/group/A0A9J7H974/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "I3LPL0-1", "protein_name": "WD repeat-containing protein 13", "gene_name": "WDR13", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MPLGTKGGYTLKGWSLHPGARSYCPLMRLRDAPTPWGGFLSICSELSILPGSRRPSCLEPGREREREERRVTLVSGPPREPQEPEAAPEAPAGGHAGRGGRGMAAVWQQVLAVDARYNAYRTPTFPQFRTQYIRRRSQLLRENAKAGHPPALRRQYLRLRGQLLGQRYGPLSEPGSARAYSNSIVRSSRTTLDRMEDFEDDPRALGARGHRRSVSRGSYQLQAQMNRAVYEDRPPGSVVPTSAAEASRAMAGDTSLSENYAFAGMYHVFDQHVDEAVPRVRFANDDRHRLACCSLDGSISLCQLVPAPPTVLRVLRGHTRGVSDFAWSLSNDILVSTSLDATMRIWASEDGRCIREIPDPDGAELLCCTFQPVNNNLTVVGNAKHNVHVMNISTGKKVKGGSSKLTGRVLALSFDAPGRLLWAGDDRGSIFSFLFDMATGKLTKAKRLVVHEGSPVTSISARSWVSREARDPSLLINACLNKLLLYRVVDNEGTLQLKRSFPIEQSSHPVRSIFCPLMSFRQGACVVTGSEDMCVHFFDVERAAKAAVNKLQGHSAPVLDVSFNCDESLLASSDASGMVIVWRREQK", "length": 587 }, "evidence": [ { "id": "A0A9J7H974", "url": "https://omabrowser.org/oma/group/A0A9J7H974/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q54EB6-1", "protein_name": "WD40 repeat-containing protein", "gene_name": "wdr13", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MEVLVKKNICKDIEFIDQNYIAQRMAKIEITTDWTQDHYSVWRNHLLDQKSNKFILRDKGDRRDEYLQKRYQLLDSKYKKQTFSSPKKHTNTTTTTTTTTTTTNNNNNNNNNNNNNNKQQQQSQQKPNQVITNNNNNNNLEDFSFSGMHHIFDQHKKSITRIKFAKNSKELLGFSSEDGGLSIVKLLPNVEIISTLKCDSSIIDFEWCNNNQEIVTATSNGVIKLFQNNGVGGGNIQLLKTFGKELSITSIVSICLHPIKPNLLFISEGDNKCIIKLIDISSGKIITKIKVHSTITSMQFEEKGTYLFLADQNGMILIFKYDFSSGSGGGSGNLSMVSKTQITNNSMPITSIQVHYWYSNAQKPPVLSILSNSKDSKMRVFIVKSLSTGSFVLFREINVPCKSLSIKSCFSPLVTKNRQGAFLVTGSEDSIIYIYDINKKDKPCINQLMGHASAVIDVAWNHDESLLATCDTSGIVIIWNRSNLKKN", "length": 487 }, "evidence": [ { "id": "A0A9J7H974", "url": "https://omabrowser.org/oma/group/A0A9J7H974/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q91V09-1", "protein_name": "WD repeat-containing protein 13", "gene_name": "Wdr13", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MAAVWQQVLAVDARYNAYRTPTFPQFRTQYIRRRSQLLRENAKAGHPPALRRQYLRLRGQLLGQRYGPLSEPGSARAYSNSIVRSSRTTLDRMEDFEDDPRALGARGHRRSVSRGSYQLQAQMNRAVYEDRPPGSVVPTSVAEASRAMAGDTSLSENYAFAGMYHVFDQHVDEAVPRVRFANDDRHRLACCSLDGSISLCQLVPAPPTVLHVLRGHTRGVSDFAWSLSNDILVSTSLDATMRIWASEDGRCIREIPDPDGAELLCCTFQPVNNNLTVVGNAKHNVHVMNISTGKKVKGGSSKLTGRVLALSFDAPGRLLWAGDDRGSVFSFLFDMATGKLTKAKRLVVHEGSPVTSISARSWVSREARDPSLLINACLNKLLLYRVVDNEGALQLKRSFPIEQSSHPVRSIFCPLMSFRQGACVVTGSEDMCVHFFDVERAAKAAVNKLQGHSAPVLDVSFNCDESLLASSDASGMVIVWRREQK", "length": 485 }, "evidence": [ { "id": "A0A9J7H974", "url": "https://omabrowser.org/oma/group/A0A9J7H974/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9H1Z4-1", "protein_name": "WD repeat-containing protein 13", "gene_name": "WDR13", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAAVWQQVLAVDARYNAYRTPTFPQFRTQYIRRRSQLLRENAKAGHPPALRRQYLRLRGQLLGQRYGPLSEPGSARAYSNSIVRSSRTTLDRMEDFEDDPRALGARGHRRSVSRGSYQLQAQMNRAVYEDRPPGSVVPTSAAEASRAMAGDTSLSENYAFAGMYHVFDQHVDEAVPRVRFANDDRHRLACCSLDGSISLCQLVPAPPTVLRVLRGHTRGVSDFAWSLSNDILVSTSLDATMRIWASEDGRCIREIPDPDSAELLCCTFQPVNNNLTVVGNAKHNVHVMNISTGKKVKGGSSKLTGRVLALSFDAPGRLLWAGDDRGSVFSFLFDMATGKLTKAKRLVVHEGSPVTSISARSWVSREARDPSLLINACLNKLLLYRVVDNEGTLQLKRSFPIEQSSHPVRSIFCPLMSFRQGACVVTGSEDMCVHFFDVERAAKAAVNKLQGHSAPVLDVSFNCDESLLASSDASGMVIVWRREQK", "length": 485 }, "evidence": [ { "id": "A0A9J7H974", "url": "https://omabrowser.org/oma/group/A0A9J7H974/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H974", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H974" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "promoter-specific chromatin binding", "id": "GO:1990841", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990841", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H974", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H974" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 318, "end_pos": 320, "annotation": "n_glycosylation_sequon" }, { "start_pos": 343, "end_pos": 345, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 318, "end_pos": 320 }, { "start_pos": 343, "end_pos": 345 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7HBN9-1", "uniprot_ac": "A0A9J7HBN9", "uniprot_id": "A0A9J7HBN9_CRIGR", "mass": { "chemical_mass": 16315.0, "monoisotopic_mass": 16315.0 }, "refseq": { "ac": "XP_035309198", "name": "uncharacterized protein C14orf119 homolog isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309198" }, "gene_names": [ { "name": "C1H14orf119", "type": "recommended", "evidence": [ { "id": "A0A9J7HBN9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBN9" } ] }, { "name": "C1H14orf119", "type": "synonym", "evidence": [ { "id": "XP_035309198", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309198" } ] } ], "protein_names": [ { "name": "Uncharacterized protein C14orf119 homolog isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7HBN9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBN9/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein C14orf119 homolog isoform X1", "type": "synonym", "evidence": [ { "id": "XP_035309198", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309198" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035309198", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309198" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HBN9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBN9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "C1H14orf119", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBN9", "locus": {} } ], "crossref": [ { "id": "100770164", "url": "https://www.ncbi.nlm.nih.gov/gene/100770164", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR028019", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028019", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100770164", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770164", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "WFNYVSQ", "url": "https://omabrowser.org/oma/group/WFNYVSQ/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7HBN9", "url": "https://www.orthodb.org/?gene=A0A9J7HBN9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3HRE4", "url": "https://www.orthodb.org/?gene=G3HRE4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16260", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16260", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16260:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16260:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14969", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14969", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035309198", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309198", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HBN9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBN9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HBN9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBN9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HRE4", "url": "https://www.uniprot.org/uniprotkb/G3HRE4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HRE4-1", "url": "https://www.uniprot.org/uniprotkb/G3HRE4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPLESSSSSMPPSFPSVLPSVPDDIASSSPPPMSYITSQEMKCILHWFASWSGPQRERFLQDLVAKAVPGKLQPLLDGLEQLSVSGASRPPCIFECQLRLWDQWFRGWAEQERNEFVRQLEIASQGQRLLLLEQEHCSSSLLLSV", "length": 145, "header": "tr|A0A9J7HBN9-1|A0A9J7HBN9_CRIGR Isoform 1 of Uncharacterized protein C14orf119 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=C1H14orf119 PE=4 SV=1 CANONICAL=A0A9J7HBN9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HBN9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBN9/entry#A0A9J7HBN9-1", "sequence": { "sequence": "MPLESSSSSMPPSFPSVLPSVPDDIASSSPPPMSYITSQEMKCILHWFASWSGPQRERFLQDLVAKAVPGKLQPLLDGLEQLSVSGASRPPCIFECQLRLWDQWFRGWAEQERNEFVRQLEIASQGQRLLLLEQEHCSSSLLLSV", "length": 145, "header": "tr|A0A9J7HBN9-1|A0A9J7HBN9_CRIGR Isoform 1 of Uncharacterized protein C14orf119 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=C1H14orf119 PE=4 SV=1 CANONICAL=A0A9J7HBN9-1" }, "locus": {} }, { "isoform_ac": "G3HRE4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBN9/entry#G3HRE4-1", "sequence": { "sequence": "MPLESSSSSMPPSFPSVLPSVPDDIASSSPPPMSYITSQEMKCILHWFASWSGPQRERFLQDLVAKAVPGKLQPLLDGLEQLSVSGASRPPCIFECQLRLWDQWFRGWAEQERNEFVRQLEVSEPDFVAKFYQAVAATAGKD", "length": 142, "header": "tr|G3HRE4-1|A0A9J7HBN9_CRIGR Computationally mapped isoform of Uncharacterized protein C14orf119 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=C1H14orf119 PE=4 SV=1 CANONICAL=A0A9J7HBN9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7H8Q7-1", "uniprot_ac": "A0A9J7H8Q7", "uniprot_id": "A0A9J7H8Q7_CRIGR", "mass": { "chemical_mass": 61103.0, "monoisotopic_mass": 61103.0 }, "refseq": { "ac": "XP_007647152", "name": "tight junction-associated protein 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007647152" }, "gene_names": [ { "name": "Tjap1", "type": "recommended", "evidence": [ { "id": "A0A9J7H8Q7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8Q7" } ] }, { "name": "Tjap1", "type": "synonym", "evidence": [ { "id": "XP_007647152", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007647152" } ] } ], "protein_names": [ { "name": "Tight junction-associated protein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7H8Q7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8Q7/entry#names_and_taxonomy" } ] }, { "name": "tight junction-associated protein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007647152", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007647152" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614523.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007647152", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007647152" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H8Q7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8Q7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tjap1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8Q7", "locus": {} } ], "crossref": [ { "id": "100754717", "url": "https://www.ncbi.nlm.nih.gov/gene/100754717", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR043441", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043441", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043470", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043470", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100754717", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754717", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "VHVDMTC", "url": "https://omabrowser.org/oma/group/VHVDMTC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7H8Q7", "url": "https://www.orthodb.org/?gene=A0A9J7H8Q7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR28664", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28664", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR28664:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28664:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15453", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15453", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF27583", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27583", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007647152", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007647152", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H8Q7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8Q7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H8Q7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8Q7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HYU3", "url": "https://www.uniprot.org/uniprotkb/G3HYU3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HYU3-1", "url": "https://www.uniprot.org/uniprotkb/G3HYU3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVDKPAPSRMTSATPPKKPYRKAPPEHRELRLEIPVSQLQQEDSLTDSERMKLLQQENEELRRRLASATRRTEALERELEIGQDCLELELGQSREELDKFKDKFRRLQNSYTASQRTNQELEDKLHTLIKKAEMDRKTLDWEIVELTNKLLDARNTINKLEELNERYRLDCNLAVQLLKCNKSHFRKHKFADLPCELQDMVRRHLRDGQEAASPSPPSSLAAGAVVPTSVIARVLEKPESLLLNSAQSASSGRPLAEDVFVHVDMSGDAPGDSASPAAPGSPSPQRNGDCCSVSTAGGSPEEELPLPAFEKLSPYPTPSPPHPLYPGRKVIEFSEDKIRIPRNSPLPNCTYATRQAISLSLVEEGSERVHRSPVPSNPASAQGSPHHQPSPAPSALSAPASSASSEEDLLASWQRAFVDRTPPPAAVAQRTAFGRDALTELQLHFSPSHSEAPPPSPHHESGLLLPTEPDSGFPREEEEEVLNLPVSPEEERQSLLPANEGTEEGPSASHIDGKAWPLPSSSRPQRSPKRMGVHHLHRKDSLTQAQEQGTLLS", "length": 553, "header": "tr|A0A9J7H8Q7-1|A0A9J7H8Q7_CRIGR Isoform 1 of Tight junction-associated protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Tjap1 PE=4 SV=1 CANONICAL=A0A9J7H8Q7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H8Q7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8Q7/entry#A0A9J7H8Q7-1", "sequence": { "sequence": "MVDKPAPSRMTSATPPKKPYRKAPPEHRELRLEIPVSQLQQEDSLTDSERMKLLQQENEELRRRLASATRRTEALERELEIGQDCLELELGQSREELDKFKDKFRRLQNSYTASQRTNQELEDKLHTLIKKAEMDRKTLDWEIVELTNKLLDARNTINKLEELNERYRLDCNLAVQLLKCNKSHFRKHKFADLPCELQDMVRRHLRDGQEAASPSPPSSLAAGAVVPTSVIARVLEKPESLLLNSAQSASSGRPLAEDVFVHVDMSGDAPGDSASPAAPGSPSPQRNGDCCSVSTAGGSPEEELPLPAFEKLSPYPTPSPPHPLYPGRKVIEFSEDKIRIPRNSPLPNCTYATRQAISLSLVEEGSERVHRSPVPSNPASAQGSPHHQPSPAPSALSAPASSASSEEDLLASWQRAFVDRTPPPAAVAQRTAFGRDALTELQLHFSPSHSEAPPPSPHHESGLLLPTEPDSGFPREEEEEVLNLPVSPEEERQSLLPANEGTEEGPSASHIDGKAWPLPSSSRPQRSPKRMGVHHLHRKDSLTQAQEQGTLLS", "length": 553, "header": "tr|A0A9J7H8Q7-1|A0A9J7H8Q7_CRIGR Isoform 1 of Tight junction-associated protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Tjap1 PE=4 SV=1 CANONICAL=A0A9J7H8Q7-1" }, "locus": {} }, { "isoform_ac": "G3HYU3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8Q7/entry#G3HYU3-1", "sequence": { "sequence": "MTSATPPKKPYRKAPPEHRELRLEIPVSQLQQEDSLTDSERMKLLQQENEELRRRLASATRRTEALERELEIGQDCLELELGQSREELDKFKDKFRRLQNSYTASQRTNQELEDKLHTLIKKAEMDRKTLDWEIVELTNKLLDARNTINKLEELNERYRLDCNLAVQLLKCNKSHFRKHKFADLPCELQDMVRRHLRDGQEAASPSPPSSLAAGAVVPTSVIARVLEKPESLLLNSAQSASSGRPLAEDVFVHVDMSGDAPGDSASPAAPGSPSPQRNGDCCSVSTAGGSPEEELPLPAFEKLSPYPTPSPPHPLYPGRKVIEFSEDKIRIPRNSPLPNCTYATRQAISLSLVEEGSERVHRSPVPSNPASAQGSPHHQPSPAPSALSAPASSASSEEDLLASWQRAFVDRTPPPAAVAQRTAFGRDALTELQLHFSPSHSEAPPPSPHHESGLLLPTEPDSGFPREEEEEVLNLPVSPEEERQSLLPANEGTEEGPSASHIDGKAWPLPSSSRPQRSPKRMGVHHLHRKDSLTQAQEQGTLLS", "length": 544, "header": "tr|G3HYU3-1|A0A9J7H8Q7_CRIGR Computationally mapped isoform of Tight junction-associated protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Tjap1 PE=4 SV=1 CANONICAL=A0A9J7H8Q7-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 317, "start_aa": "Thr", "end_pos": 317, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr317", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HYU3", "url": "https://www.uniprot.org/uniprotkb/G3HYU3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HYU3", "url": "https://www.uniprot.org/uniprotkb/G3HYU3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100754717", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754717", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I6GDP5-1", "protein_name": "Tight junction associated protein 1", "gene_name": "Tjap1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MTSAAPAKKPYRKAPPEHRELRLETPVSRLEQQEPLTDAERMQLLQQENEELRRRLASATRRTEALERELEIGQDCLELELGQSREELDKFKDKFRRLQNSYTASQRTNQELEDKLHALASLSHSWIFAIKKAEMDRKTLDWEIVELTNKLLDARNTINKLEELNERYRLDCNLAVQLLKCNKSHFRNHKFADLPCELQDMVRKHLRSGQEVASPSRSPSSSLAPGAVVPTSVIARVLEKPESLLLNSDQSGSAGRPLAEDVFVHVDMSGGDPASPPAPGSPSPQLNGECCSVSIAGDSPEEELPLPAFDKLSPYPTPSPPHPLYPGRKVIEFSEDKIRIPRNSPLPNCTYATRQAISLSLVEDGGERAHCSPVPSSPASAGGSPYHQPSPARSAPSAPASSASSEEDLLASWQRAFVDRTPPPAAVVQRTAFGRDALPELQLHFPPGHSTAPLPSPRHERGLVLPSEPDSAFPREEEEEMLNLPVSPEEERQSLLPDKEDTGEGPSPSHVDGRAWPLSSSSRPQRSPKRMGVHHLHRKDSLTQAQEQGTLLS", "length": 553 }, "evidence": [ { "id": "A0A9J7H8Q7", "url": "https://omabrowser.org/oma/group/A0A9J7H8Q7/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BFM9-1", "protein_name": "Tight junction associated protein 1", "gene_name": "TJAP1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MTSAAPAKKPYRKAPPEHRELRLESPGSRPEQEEPLTDAERMKLLQQENEELRRRLASATRRTEALERELEIGQDCLELELGQSREELDKFKDKFRRLQNSYTASQRTNQELEDKLHTLIKKAEMDRKTLDWEIVELTNKLLDARNTINKLEELNERYRLDCNLAVQLLKCNKSHFRNHKFADLPCELQDMVRKHLHSGQEAASPGPAPSLAPGAVVPTSVIARVLEKPESLLLNSAQSGSTGHPLAEDVFVHVDMSGGDPGDSASPPAPSSPSPQPNGECHSLGTAGGSPEEELPLPAFEKLSPYPTPSPPHPLYPGRRVIEFSEDKVRIPRNSPLPNCTYATRQAISLSLVEEGSERARPSPVPSSPASAQASPQHQPRPAPPALSAPASSASSEEDLLASWQRVFVDRAPPPAAVAQRTAFGRDALPELQRHFALGPAGGDEVQAPSSPPGESGLLLLPEADPGFPREEDEEELNLPVSPEEERQSLLPSDAGTEEGPSAPRAEGRVWALPSPSRPQRSPKRMGVHHLHRKDSLTQAQEQGTLLH", "length": 548 }, "evidence": [ { "id": "A0A9J7H8Q7", "url": "https://omabrowser.org/oma/group/A0A9J7H8Q7/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q5JTD0-1", "protein_name": "Tight junction-associated protein 1", "gene_name": "TJAP1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTSAAPAKKPYRKAPPEHRELRLEIPGSRLEQEEPLTDAERMKLLQEENEELRRRLASATRRTEALERELEIGQDCLELELGQSREELDKFKDKFRRLQNSYTASQRTNQELEDKLHTLASLSHSWIFAIKKAEMDRKTLDWEIVELTNKLLDAKNTINKLEELNERYRLDCNLAVQLLKCNKSHFRNHKFADLPCELQDMVRKHLHSGQEAASPGPAPSLAPGAVVPTSVIARVLEKPESLLLNSAQSGSAGRPLAEDVFVHVDMSEGVPGDPASPPAPGSPTPQPNGECHSLGTARGSPEEELPLPAFEKLNPYPTPSPPHPLYPGRRVIEFSEDKVRIPRNSPLPNCTYATRQAISLSLVEEGSERARPSPVPSTPASAQASPHHQPSPAPLTLSAPASSASSEEDLLVSWQRAFVDRTPPPAAVAQRTAFGRDALPELQRHFAHSPADRDEVVQAPSARPEESELLLPTEPDSGFPREEEELNLPISPEEERQSLLPINRGTEEGPGTSHTEGRAWPLPSSSRPQRSPKRMGVHHLHRKDSLTQAQEQGNLLN", "length": 557 }, "evidence": [ { "id": "A0A9J7H8Q7", "url": "https://omabrowser.org/oma/group/A0A9J7H8Q7/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9DCD5-1", "protein_name": "Tight junction-associated protein 1", "gene_name": "Tjap1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSSAAPAKKPYRKAPPEHRELRLEIPVSRLEQEESLTDAERMKLLQQENEELRKRLASATRRTEALERELEIGQDCLELELGQSREELDKFKDKFRRLQNSYTASQRTNQELEDKLHALASLSHSWIFAIKKAEMDRKTLDWEIVELTNKLLDARNTINKLEELNERYRLDCNLAVQLLKCNKSHFRNHKLADLPCELQDMVRKHLRSGQEVASPSPSPSSSLSPGAVVPTSVIARVLEKPESLLLNSAQSGSAGRPLAEDVFVHVDMSGGDPASPPAPGSPNGECCSVSTAGGSPEEELPLPAFDKLSPYPTPSPPHPLYPGRKVIEFSEDKIRIPRNSPLPNCTYATRQAISLSLVEDGSERAHRSSVPSSPASAQGSPHHQPSPAPSALSAPASSASSEEDLLASWQRAFVDRTPPPAAVVQRTAFGRDSLPELQLHFSPGHSTAPPPSPHRERGLVLPAEPDSGFPQDEEEEMLNLPVSPEEERQSLLPDKEGTEEASGPSHVDGRAWPLPSPSRPQRSPKRMGVHHLHRKDSLTQAQEQGTVLS", "length": 549 }, "evidence": [ { "id": "A0A9J7H8Q7", "url": "https://omabrowser.org/oma/group/A0A9J7H8Q7/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "endosome", "id": "GO:0005768", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005768", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H8Q7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8Q7" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H8Q7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8Q7" } ], "pmid": "" }, { "name": "trans-Golgi network", "id": "GO:0005802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005802", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H8Q7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8Q7" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H8Q7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8Q7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "Golgi organization", "id": "GO:0007030", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007030", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H8Q7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8Q7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 181, "end_pos": 183, "annotation": "n_glycosylation_sequon" }, { "start_pos": 348, "end_pos": 350, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7H8Q7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8Q7" }, { "id": "PF15453", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15453" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Tight junction-associated protein 1", "eco_id": "ECO_0000259", "start_pos": 282, "end_pos": 449, "start_aa": "Pro", "end_aa": "His", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 317 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 181, "end_pos": 183 }, { "start_pos": 348, "end_pos": 350 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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{ "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7H8A6-1", "uniprot_ac": "A0A9J7H8A6", "uniprot_id": "A0A9J7H8A6_CRIGR", "mass": { "chemical_mass": 27640.0, "monoisotopic_mass": 27640.0 }, "refseq": { "ac": "XP_003514628", "name": "transmembrane gamma-carboxyglutamic acid protein 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003514628" }, "gene_names": [ { "name": "Prrg1", "type": "recommended", "evidence": [ { "id": "A0A9J7H8A6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8A6" } ] }, { "name": "Prrg1", "type": "synonym", "evidence": [ { "id": "XP_003514628", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003514628" } ] } ], "protein_names": [ { "name": "Transmembrane gamma-carboxyglutamic acid protein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7H8A6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8A6/entry#names_and_taxonomy" } ] }, { "name": "transmembrane gamma-carboxyglutamic acid protein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003514628", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003514628" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003616749.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_003514628.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003514628", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003514628" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H8A6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8A6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Prrg1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8A6", "locus": {} } ], "crossref": [ { "id": "A0A9J7H8A6", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H8A6", "database": "AlphaFoldDB", "categories": [] }, { "id": "100762987", "url": "https://www.ncbi.nlm.nih.gov/gene/100762987", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000294", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000294", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017857", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017857", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035972", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035972", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050442", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050442", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100762987", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762987", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HWGRDYH", "url": "https://omabrowser.org/oma/group/HWGRDYH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7H8A6", "url": "https://www.orthodb.org/?gene=A0A9J7H8A6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3IJ07", "url": "https://www.orthodb.org/?gene=G3IJ07", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24278", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24278", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24278:SF37", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24278:SF37", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00594", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00594", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003514628", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003514628", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H8A6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8A6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H8A6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8A6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3IJ07", "url": "https://www.uniprot.org/uniprotkb/G3IJ07", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3IJ07-1", "url": "https://www.uniprot.org/uniprotkb/G3IJ07-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPQCYRGTLENHHPGPARSHKKKMGRVFLTGEKANSVLKRYPRANGLFEEIRQGNIERECNEEVCTYEEAREAFENHEKTKEFWSTYTNAQQGETNRGSDWFQFYLTFPLIFGLFIILLVIFLIWRCFLRNKTRRQTVTDSHIPFPQRLNIITPPPPPDEVFDNSGLSPGFLEYVVGRSDSVSTRLSNCDPPPTYEEATGQVNLRRSETEPHLDPPPEYEDIVNSSSASAIAMVPVVTTIK", "length": 241, "header": "tr|A0A9J7H8A6-1|A0A9J7H8A6_CRIGR Isoform 1 of Transmembrane gamma-carboxyglutamic acid protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Prrg1 PE=4 SV=1 CANONICAL=A0A9J7H8A6-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H8A6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8A6/entry#A0A9J7H8A6-1", "sequence": { "sequence": "MPQCYRGTLENHHPGPARSHKKKMGRVFLTGEKANSVLKRYPRANGLFEEIRQGNIERECNEEVCTYEEAREAFENHEKTKEFWSTYTNAQQGETNRGSDWFQFYLTFPLIFGLFIILLVIFLIWRCFLRNKTRRQTVTDSHIPFPQRLNIITPPPPPDEVFDNSGLSPGFLEYVVGRSDSVSTRLSNCDPPPTYEEATGQVNLRRSETEPHLDPPPEYEDIVNSSSASAIAMVPVVTTIK", "length": 241, "header": "tr|A0A9J7H8A6-1|A0A9J7H8A6_CRIGR Isoform 1 of Transmembrane gamma-carboxyglutamic acid protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Prrg1 PE=4 SV=1 CANONICAL=A0A9J7H8A6-1" }, "locus": {} }, { "isoform_ac": "G3IJ07-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8A6/entry#G3IJ07-1", "sequence": { "sequence": "MGRVFLTGEKANSVLKRYPRANGLFEEIRQGNIERECNEEVCTYEEAREAFENHEKTKEFWSTYTNAQQGETNRGSDWFQFYLTFPLIFGLFIILLVIFLIWRCFLRNKTRRQTVTDSHIPFPQRLNIITPPPPPDEVFDNSGLSPGFLEYVVGRSDSVSTRLSNCDPPPTYEEATGQVNLRRSETEPHLDPPPEYEDIVNSSSASAIAMVPVVTTIK", "length": 218, "header": "tr|G3IJ07-1|A0A9J7H8A6_CRIGR Computationally mapped isoform of Transmembrane gamma-carboxyglutamic acid protein 1 isoform X1 OS=Cricetulus griseus OX=10029 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} ], "sequence": { "sequence": "MADSSERGAGKPTTTGAHKTKGRRVQGGRVIESRYLQYEKKTKKVMESSTSGATVSASTGGKPPEERKASALSRSKEDSQVIGMGDLQSTMLEGHVTTPPNLDLSGINDKSMFRKPPQLDRTMSKEAQSVFCTTPQKKKTLHKKRRLALQDLQKTMDMMESQTLLLTLLSVKMENNLTLLEEKAEKDLAAMCREKEKLQGQVLELRRQLLLQQKHEELAAALDAQMELLGPFQAVAERFKEQYKTLATALDNTRHELPVQAIHMQGSGQELLDDLQPALRTTLQLLGELGICSPDSSVQEPCLLEELRNLTKKKDLELHRIVDQVLELSSQASKEVALINQEVWEEAPGTPYLQP", "length": 355, "header": "tr|A0A9J7H8X4-1|A0A9J7H8X4_CRIGR Isoform 1 of HAUS augmin-like complex subunit 8 isoform X9 OS=Cricetulus griseus OX=10029 GN=Haus8 PE=4 SV=1 CANONICAL=A0A9J7H8X4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F478-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8X4/entry#A0A9J7F478-1", "sequence": { "sequence": "MADSSERGAGKPTTTGAHKTKGRRVQGGRVIESRYLQYEKKTKKVSASTGGKPPEERKASALSRSKDSQVIGMGDLQSTMLEGHVTTPPNLDLSGINDKSMFRKPPQLDRTMSKEAQSVFCTTPQKKKTLHKKRRDLQKTMDMMESQTLLLTLLSVKMENNLTLLEEKAEKDLAAMCREKEKLQGQVLELRRQLLLQQKHEELAAALDAQMELLGPFQAVAERFKEQYKTLATALDNTRHELPVQAIHMQGSGQELLDDLQPALRTTLQLLGELGICSPDSSVQEPCLLEELRNLTKKKDLELHRIVDQVLELSSQASKEVALINQEVWEEAPGTPYLQP", "length": 340, "header": "tr|A0A9J7F478-1|A0A9J7H8X4_CRIGR Computationally mapped isoform of HAUS augmin-like complex subunit 8 isoform X9 OS=Cricetulus griseus OX=10029 GN=Haus8 PE=4 SV=1 CANONICAL=A0A9J7H8X4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H8B5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8X4/entry#A0A9J7H8B5-1", "sequence": { "sequence": "MADSSERGAGKPTTTGAHKTKGRRVQGGRVIESRYLQYEKKTKKVSASTGGKPPEERKASALSRSKDSQVIGMGDLQSTMLEGHVTTPPNLDLSGINDKSMFRKPPQLDRTMSKEAQSVFCTTPQKKKTLHKKRRLALQDLQKTMDMMESQTLLLTLLSVKMENNLTLLEEKAEKDLAAMCREKEKLQGQVLELRRQLLLQQKHEELAAALDAQMELLGPFQAVAERFKEQYKTLATALDNTRHELPVQAIHMQGSGQELLDDLQPALRTTLQLLGELGICSPDSSVQEPCLLEELRNLTKKKDLELHRIVDQVLELSSQASKEVALINQEVWEEAPGTPYLQP", "length": 344, "header": "tr|A0A9J7H8B5-1|A0A9J7H8B5_CRIGR Computationally mapped isoform of HAUS augmin-like complex subunit 8 isoform X11 OS=Cricetulus griseus OX=10029 GN=Haus8 PE=4 SV=1 CANONICAL=A0A9J7H8X4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H8X4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8X4/entry#A0A9J7H8X4-1", "sequence": { "sequence": "MADSSERGAGKPTTTGAHKTKGRRVQGGRVIESRYLQYEKKTKKVMESSTSGATVSASTGGKPPEERKASALSRSKEDSQVIGMGDLQSTMLEGHVTTPPNLDLSGINDKSMFRKPPQLDRTMSKEAQSVFCTTPQKKKTLHKKRRLALQDLQKTMDMMESQTLLLTLLSVKMENNLTLLEEKAEKDLAAMCREKEKLQGQVLELRRQLLLQQKHEELAAALDAQMELLGPFQAVAERFKEQYKTLATALDNTRHELPVQAIHMQGSGQELLDDLQPALRTTLQLLGELGICSPDSSVQEPCLLEELRNLTKKKDLELHRIVDQVLELSSQASKEVALINQEVWEEAPGTPYLQP", "length": 355, "header": "tr|A0A9J7H8X4-1|A0A9J7H8X4_CRIGR Isoform 1 of HAUS augmin-like complex subunit 8 isoform X9 OS=Cricetulus griseus OX=10029 GN=Haus8 PE=4 SV=1 CANONICAL=A0A9J7H8X4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H924-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8X4/entry#A0A9J7H924-1", "sequence": { "sequence": "MADSSERGAGKPTTTGAHKTKGRRVQGGRVIESRYLQYEKKTKKVMESSTSGATVSASTGGKPPEERKASALSRSKDSQVIGMGDLQSTMLEGHVTTPPNLDLSGINDKSMFRKPPQLDRTMSKEAQSVFCTTPQKKKTLHKKRRLALQDLQKTMDMMESQTLLLTLLSVKMENNLTLLEEKAEKDLAAMCREKEKLQGQVLELRRQLLLQQKHEELAAALDAQMELLGPFQAVAERFKEQYKTLATALDNTRHELPVQAIHMQGSGQELLDDLQPALRTTLQLLGELGICSPDSSVQEPCLLEELRNLTKKKDLELHRIVDQVLELSSQASKEVALINQEVWEEAPGTPYLQP", "length": 354, "header": "tr|A0A9J7H924-1|A0A9J7H924_CRIGR Computationally mapped isoform of HAUS augmin-like complex subunit 8 isoform X10 OS=Cricetulus griseus OX=10029 GN=Haus8 PE=4 SV=1 CANONICAL=A0A9J7H8X4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F478", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F478" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F478", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F478" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100754778", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754778", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H8X4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8X4" } ], "pmid": "" }, { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H8X4", "url": 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"UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HCJ7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCJ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HCJ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCJ7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K3C7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3C7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K3C7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3C7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTYKDVHIDFTWEEWSLLDTSQKNLYKDVMLETYKNLADIGKTIQHIIEYGKAFMYTHFPCRHERSQTGERSSEHTQCVNAFTYNSDLQRHKRSHTGEKPYECNQCGKAFSRHSHLQSHKRTHTGEKPYECNQCGKAFSQHSHLQRHKTSHTGEKPYECNQCGKAFSQHSTLQIHKRTHTGEKPYECNQCGKAFSQHSLLQRHKRTHTGEKPYECNQCGKAFSCHSNLQVHKRSHSGEKPYGCNECGKAFSCHGNLQMHERTHTGEKPYECNQCGKVFSQHIHLQRHKTSHTGEKPYECNQCGKAFSQHSTLQIHKRTHTGEKPYECNQCGKAFSQHSLLQGHKRTHTGEKPYGCNQCGKAFSCHSNLQVHKRSHTGEKPYGCNQCGKAFSCHSNLQMHERTHTGEKPYECHQCGKAFSQHNTLQKHKRIHTGEKPYECKQCGKAFSCHGHLQKHKRTHT", "length": 460, "header": "tr|A0A9J7HCJ7-1|A0A9J7HCJ7_CRIGR Isoform 1 of Zinc finger protein 431-like isoform X4 OS=Cricetulus griseus OX=10029 GN=LOC100766483 PE=3 SV=1 CANONICAL=A0A9J7HCJ7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HC69-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCJ7/entry#A0A9J7HC69-1", "sequence": { "sequence": "MTYKDVHIDFTWEEWSLLDTSQKNLYKDVMLETYKNLADIGKTGDERSSEHTQCVNAFTYNSDLQRHKRSHTGEKPYECNQCGKAFSRHSHLQSHKRTHTGEKPYECNQCGKAFSQHSHLQRHKTSHTGEKPYECNQCGKAFSQHSTLQIHKRTHTGEKPYECNQCGKAFSQHSLLQRHKRTHTGEKPYECNQCGKAFSCHSNLQVHKRSHSGEKPYGCNECGKAFSCHGNLQMHERTHTGEKPYECNQCGKVFSQHIHLQRHKTSHTGEKPYECNQCGKAFSQHSTLQIHKRTHTGEKPYECNQCGKAFSQHSLLQGHKRTHTGEKPYGCNQCGKAFSCHSNLQVHKRSHTGEKPYGCNQCGKAFSCHSNLQMHERTHTGEKPYECHQCGKAFSQHNTLQKHKRIHTGEKPYECKQCGKAFSCHGHLQKHKRTHT", "length": 436, "header": "tr|A0A9J7HC69-1|A0A9J7HC69_CRIGR Computationally mapped isoform of Zinc finger protein 431-like isoform X5 OS=Cricetulus griseus OX=10029 GN=LOC100766483 PE=3 SV=1 CANONICAL=A0A9J7HCJ7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HCA2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCJ7/entry#A0A9J7HCA2-1", "sequence": { "sequence": "MTYKDVHIDFTWEEWSLLDTSQKNLYKDVMLETYKNLADIGKTVPSYFKLSKGYKRHERSQTGERSSEHTQCVNAFTYNSDLQRHKRSHTGEKPYECNQCGKAFSRHSHLQSHKRTHTGEKPYECNQCGKAFSQHSHLQRHKTSHTGEKPYECNQCGKAFSQHSTLQIHKRTHTGEKPYECNQCGKAFSQHSLLQRHKRTHTGEKPYECNQCGKAFSCHSNLQVHKRSHSGEKPYGCNECGKAFSCHGNLQMHERTHTGEKPYECNQCGKVFSQHIHLQRHKTSHTGEKPYECNQCGKAFSQHSTLQIHKRTHTGEKPYECNQCGKAFSQHSLLQGHKRTHTGEKPYGCNQCGKAFSCHSNLQVHKRSHTGEKPYGCNQCGKAFSCHSNLQMHERTHTGEKPYECHQCGKAFSQHNTLQKHKRIHTGEKPYECKQCGKAFSCHGHLQKHKRTHT", "length": 454, "header": "tr|A0A9J7HCA2-1|A0A9J7HCA2_CRIGR Computationally mapped isoform of Zinc finger protein 431-like isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100766483 PE=3 SV=1 CANONICAL=A0A9J7HCJ7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HCJ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCJ7/entry#A0A9J7HCJ7-1", "sequence": { "sequence": "MTYKDVHIDFTWEEWSLLDTSQKNLYKDVMLETYKNLADIGKTIQHIIEYGKAFMYTHFPCRHERSQTGERSSEHTQCVNAFTYNSDLQRHKRSHTGEKPYECNQCGKAFSRHSHLQSHKRTHTGEKPYECNQCGKAFSQHSHLQRHKTSHTGEKPYECNQCGKAFSQHSTLQIHKRTHTGEKPYECNQCGKAFSQHSLLQRHKRTHTGEKPYECNQCGKAFSCHSNLQVHKRSHSGEKPYGCNECGKAFSCHGNLQMHERTHTGEKPYECNQCGKVFSQHIHLQRHKTSHTGEKPYECNQCGKAFSQHSTLQIHKRTHTGEKPYECNQCGKAFSQHSLLQGHKRTHTGEKPYGCNQCGKAFSCHSNLQVHKRSHTGEKPYGCNQCGKAFSCHSNLQMHERTHTGEKPYECHQCGKAFSQHNTLQKHKRIHTGEKPYECKQCGKAFSCHGHLQKHKRTHT", "length": 460, "header": "tr|A0A9J7HCJ7-1|A0A9J7HCJ7_CRIGR Isoform 1 of Zinc finger protein 431-like isoform X4 OS=Cricetulus griseus OX=10029 GN=LOC100766483 PE=3 SV=1 CANONICAL=A0A9J7HCJ7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K3C7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCJ7/entry#A0A9J7K3C7-1", "sequence": { "sequence": "MTYKDVHIDFTWEEWSLLDTSQKNLYKDVMLETYKNLADIEYIKEDHITEEECTSSKGYKRHERSQTGERSSEHTQCVNAFTYNSDLQRHKRSHTGEKPYECNQCGKAFSRHSHLQSHKRTHTGEKPYECNQCGKAFSQHSHLQRHKTSHTGEKPYECNQCGKAFSQHSTLQIHKRTHTGEKPYECNQCGKAFSQHSLLQRHKRTHTGEKPYECNQCGKAFSCHSNLQVHKRSHSGEKPYGCNECGKAFSCHGNLQMHERTHTGEKPYECNQCGKVFSQHIHLQRHKTSHTGEKPYECNQCGKAFSQHSTLQIHKRTHTGEKPYECNQCGKAFSQHSLLQGHKRTHTGEKPYGCNQCGKAFSCHSNLQVHKRSHTGEKPYGCNQCGKAFSCHSNLQMHERTHTGEKPYECHQCGKAFSQHNTLQKHKRIHTGEKPYECKQCGKAFSCHGHLQKHKRTHT", "length": 459, "header": "tr|A0A9J7K3C7-1|A0A9J7HCJ7_CRIGR Computationally mapped isoform of Zinc finger protein 431-like isoform X4 OS=Cricetulus griseus OX=10029 GN=LOC100766483 PE=3 SV=1 CANONICAL=A0A9J7HCJ7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [], "pathway": [ { "id": "cge:100766483", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766483", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCJ7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCJ7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCJ7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCJ7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCJ7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCJ7" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCJ7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCJ7" } ], "pmid": "" }, { "name": "DNA-binding transcription activator activity, RNA polymerase II-specific", "id": "GO:0001228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001228", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCJ7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCJ7" } ], "pmid": "" }, { "name": "RNA polymerase II transcription regulatory region sequence-specific DNA binding", "id": "GO:0000977", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000977", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCJ7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCJ7" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCJ7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCJ7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7HCJ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCJ7" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 59, "end_pos": 100, "start_aa": "Phe", "end_aa": "Pro", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7HCJ7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCJ7" }, { "id": "PS50805", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50805" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KRAB", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 78, "start_aa": "Met", "end_aa": "Cys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "uniprot_canonical_ac": "A0A9J7H7B5-1", "uniprot_ac": "A0A9J7H7B5", "uniprot_id": "A0A9J7H7B5_CRIGR", "mass": { "chemical_mass": 88803.0, "monoisotopic_mass": 88803.0 }, "refseq": { "ac": "XP_035305738", "name": "BCLAF1 and THRAP3 family member 3 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305738" }, "gene_names": [ { "name": "Bclaf3", "type": "recommended", "evidence": [ { "id": "A0A9J7H7B5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7B5" } ] }, { "name": "Bclaf3", "type": "synonym", "evidence": [ { "id": "XP_035305738", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305738" } ] } ], "protein_names": [ { "name": "BCLAF1 and THRAP3 family member 3 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_035305738", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305738" }, { "id": "A0A9J7H7B5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7B5/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048604.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035305738", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305738" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H7B5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7B5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Bclaf3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7B5", "locus": {} } ], "crossref": [ { "id": "100752113", "url": "https://www.ncbi.nlm.nih.gov/gene/100752113", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029199", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029199", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100752113", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752113", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KWHEDEF", "url": "https://omabrowser.org/oma/group/KWHEDEF/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A061HV27", "url": "https://www.orthodb.org/?gene=A0A061HV27", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7GKR8", "url": "https://www.orthodb.org/?gene=A0A9J7GKR8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7GKT6", "url": "https://www.orthodb.org/?gene=A0A9J7GKT6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7H7B5", "url": "https://www.orthodb.org/?gene=A0A9J7H7B5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JZ48", "url": "https://www.orthodb.org/?gene=A0A9J7JZ48", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7K0V5", "url": "https://www.orthodb.org/?gene=A0A9J7K0V5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7K2C9", "url": "https://www.orthodb.org/?gene=A0A9J7K2C9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15268", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15268", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15268:SF17", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15268:SF17", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15440", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15440", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035305738", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305738", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A061HV27", "url": "https://www.uniprot.org/uniprotkb/A0A061HV27", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A061HV27-1", "url": "https://www.uniprot.org/uniprotkb/A0A061HV27-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GKR8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKR8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GKR8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKR8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GKT6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKT6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GKT6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKT6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H7B5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7B5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H7B5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7B5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H877", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H877", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H877-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H877-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JZ48", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZ48", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JZ48-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JZ48-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K0V5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0V5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K0V5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0V5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K244", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K244", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K244-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K244-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K2C9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2C9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K2C9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2C9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K9W5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9W5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K9W5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K9W5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KBW9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBW9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KBW9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBW9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KDB0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDB0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KDB0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDB0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MARSRSRSPRWKQRSLSPQSRNFEYYEERHFHGHYDPEYRNDPKRSFAWRVDDEKHGQNKPRIPPRVNPYYRSYENRSPSPNVKSVEKFDTYKPHQEYFPGRGDDDRRSQYMPTYSESATSYTEHDRDCYPPQMQGRYIPDEHRGRGSGRGGKPPEMSLEDSFRFEEAWHEDELRHQRVQEESYPQSPRRGSEDFDARNPFQKRYPEDHDFRKYSYTSKRPTDAARYENREPSRIPKWKPEHSFVPFQEKNEDWSFGSQSHRYTEREYPEISSATKVSYDYRHKHHKLSDSEQDFPDGRFQKYLKEEDRKYSSLKVPGNRESDCFSAARGRENENEQASGPFQLYKKDCVSYTNTNIKEADLGPCNDKWKRKLKEDCRKESASSSKQLRASPKPEDKRYSFVKKKSLTVKVDVNNIDTFRSTSRYSAERQVSHDLVAVGRKNDNFHPVFQHLDSPQNPENKPTEEFTQEIITIIHEVKASCSATSDITLHERFSRMQSRHPDFDEMALSSDPEFHRRIDMSLADLQNKQTMVYEPDETLVKVIDPNDLRHDIERRRKERLQNEDENIFHMASPTERNHQCPSFSKVKTVRVDGFQKPPHFIKSNFRKFIQKPYINYPMQRKDAITRKRFRVEENHQNRRGSKRSFKNFLGGRFQPHFKSHLVQKSLYIQAKYQRLRFAGPRGFITNKFRNRFLRRKKCFPCLRGVGIHEYPVSEYSTIIYLKHLYYHSLQRKASLIKAGSIICL", "length": 744, "header": "tr|A0A9J7H7B5-1|A0A9J7H7B5_CRIGR Isoform 1 of BCLAF1 and THRAP3 family member 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Bclaf3 PE=3 SV=1 CANONICAL=A0A9J7H7B5-1" }, "isoforms": [ { "isoform_ac": "A0A061HV27-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7B5/entry#A0A061HV27-1", "sequence": { "sequence": "MARSRSRSPRWKQRSLSPQSRNFEYYEERHFHGHYDPEYRNDPKRSFAWRVDDEKHGQNKPRIPPRVNPYYRSYENRSPSPNVKSVEKFDTYKPHQEYFPGRGDDDRRSQYMPTYSESATSYTEHDRDCYPPQMQGRYIPDEHRGRGSGRGGKPPEMSLEDSFRFEEAWHEDELRHQRVQEESYPQSPRRGSEDFDARNPFQKRYPEDHDFRKYSYTSKRPTDAARYENREPSRIPKWKPEHSFVPFQEKNEDWSFGSQSHRYTEREYPEISSATKVSYDYRHKHHKLSDSEQDFPDGRFQKYLKEEDRKYSSLKVPGNRESDCFSAARGRENENEQASGPFQLYKKDCVSYTNTNIKEADLGPCNDKWKRKLKEDCRKESASSSKQLRASPKPEDKRYSFVKKKSLTVKVDVNNIDTFRSTSRYSAERQVSHDLVAVGRKNDNFHPVFQHLDSPQNPENKPTEEFTQEIITIIHEVKASCSATSDITLHERFSRMQSRHPDFDEMALSSDPEFHRRIDMSLADLQNKQTMVYEPDETLVKVIDPNDLRHDIERRRKERLQNEDENIFHMASPTERNHQCPSFSKNYPMQRKDAITRKRFRVEENHQNRRGSKRSFKEHAILPQKTNLQLLEMELTLHEDLTEDLVWSGIRIDTKTLIL", "length": 659, "header": "tr|A0A061HV27-1|A0A9J7H7B5_CRIGR Computationally mapped isoform of BCLAF1 and THRAP3 family member 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Bclaf3 PE=3 SV=1 CANONICAL=A0A9J7H7B5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GKR8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7B5/entry#A0A9J7GKR8-1", "sequence": { "sequence": "MARSRSRSPRWKQRSLSPQSRNFEYYEERHFHGHYDPEYRNDPKRSFAWRVDDEKHGQNKPRIPPRVNPYYRSYENRSPSPNVKSVEKFDTYKPHQEYFPGRGDDDRRSQYMPTYSESATSYTEHDRDCYPPQMQGRYIPDEHRGRGSGRGGKPPEMSLEDSFRFEEAWHEDELRHQRVQEESYPQSPRRGSEDFDARNPFQKRYPEDHDFRKYSYTSKRPTDAARYENREPSRIPKWKPEHSFVPFQEKNEDWSFGSQSHRYTEREYPEISSATKVSYDYRHKHHKLSDSEQDFPDGRFQKYLKEEDRKYSSLKVPGNRESDCFSAARGRENENEQASGPFQLYKKDCVSYTNTNIKEADLGPCNDKWKRKLKEDCRKESASSSKQLRASPKPEDKRYSFVKKKSLTVKVDVNNIDTFRSTSRYSAERQVSHDLVAVGRKNDNFHPVFQHLDSPQNPENKPTEEFTQEIITIIHEVKASCSATSDITLHERFSRMQSRHPDFDEMALSSDPEFHRRIDMSLADLQNKQTMVYEPDETLVKVIDPNDLRHDIERRRKERLQNEDENIFHMASPTERNHQCPSFSKVKTVRVDGFQKPPHFIKSNFRKFIQKPYINYPMQRKDAITRKRFRVEENHQNRRGSKRSFKNFLGGRFQPHFKSHLVQKSLYIQAKYQRLRFAGPRGFITNKFRNRFLRRKKEHAILPQKTNLQLLEMELTLHEDLTEDLVWSGIRIDTKTLIL", "length": 739, "header": "tr|A0A9J7GKR8-1|A0A9J7H7B5_CRIGR Computationally mapped isoform of BCLAF1 and THRAP3 family member 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Bclaf3 PE=3 SV=1 CANONICAL=A0A9J7H7B5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GKT6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7B5/entry#A0A9J7GKT6-1", "sequence": { "sequence": "MARSRSRSPRWKQRSLSPQSRNFEYYEERHFHGHYDPEYRNDPKRSFAWRVDDEKHGQNKPRIPPRVNPYYRSYENRSPSPNVKSVEKFDTYKPHQEYFPGRGDDDRRSQYMPTYSESATSYTEHDRDCYPPQMQGRYIPDEHRGRGSGRGGKPPEMSLEDSFRFEEAWHEDELRHQRVQEESYPQSPRRGSEDFDARNPFQKRYPEDHDFRKYSYTSKRPTDAARYENREPSRIPKWKPEHSFVPFQEKNEDWSFGSQSHRYTEREYPEISSATKVSYDYRHKHHKLSDSEQDFPDGRFQKYLKEEDRKYSSLKVPGNRESDCFSAARGRENENEQASGPFQLYKKDCVSYTNTNIKEADLGPCNDKWKRKLKEDCRKESASSSKQLRASPKPEDKRYSFVKKKSLTVKVDVNNIDTFRSTSRYSAERQVSHDLVAVGRKNDNFHPVFQHLDSPQNPENKPTEEFTQEIITIIHEVKASCSATSDITLHERFSRMQSRHPDFDEMALSSDPEFHRRIDMSLADLQNKQTMVYEPDETLVKVIDPNDLRHDIERRRKERLQNEDENIFHMASPTERNHQCPSFSKVKTVRVDGFQKPPHFIKSNFRKFIQKPYINYPMQRKDAITRKRFRVEENHQNRRGSKRSFKEHAILPQKTNLQLLEMELTLHEDLTEDLVWSGIRIDTKTLIL", "length": 688, "header": "tr|A0A9J7GKT6-1|A0A9J7H7B5_CRIGR Computationally mapped isoform of BCLAF1 and THRAP3 family member 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Bclaf3 PE=3 SV=1 CANONICAL=A0A9J7H7B5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H7B5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7B5/entry#A0A9J7H7B5-1", "sequence": { "sequence": "MARSRSRSPRWKQRSLSPQSRNFEYYEERHFHGHYDPEYRNDPKRSFAWRVDDEKHGQNKPRIPPRVNPYYRSYENRSPSPNVKSVEKFDTYKPHQEYFPGRGDDDRRSQYMPTYSESATSYTEHDRDCYPPQMQGRYIPDEHRGRGSGRGGKPPEMSLEDSFRFEEAWHEDELRHQRVQEESYPQSPRRGSEDFDARNPFQKRYPEDHDFRKYSYTSKRPTDAARYENREPSRIPKWKPEHSFVPFQEKNEDWSFGSQSHRYTEREYPEISSATKVSYDYRHKHHKLSDSEQDFPDGRFQKYLKEEDRKYSSLKVPGNRESDCFSAARGRENENEQASGPFQLYKKDCVSYTNTNIKEADLGPCNDKWKRKLKEDCRKESASSSKQLRASPKPEDKRYSFVKKKSLTVKVDVNNIDTFRSTSRYSAERQVSHDLVAVGRKNDNFHPVFQHLDSPQNPENKPTEEFTQEIITIIHEVKASCSATSDITLHERFSRMQSRHPDFDEMALSSDPEFHRRIDMSLADLQNKQTMVYEPDETLVKVIDPNDLRHDIERRRKERLQNEDENIFHMASPTERNHQCPSFSKVKTVRVDGFQKPPHFIKSNFRKFIQKPYINYPMQRKDAITRKRFRVEENHQNRRGSKRSFKNFLGGRFQPHFKSHLVQKSLYIQAKYQRLRFAGPRGFITNKFRNRFLRRKKCFPCLRGVGIHEYPVSEYSTIIYLKHLYYHSLQRKASLIKAGSIICL", "length": 744, "header": "tr|A0A9J7H7B5-1|A0A9J7H7B5_CRIGR Isoform 1 of BCLAF1 and THRAP3 family member 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Bclaf3 PE=3 SV=1 CANONICAL=A0A9J7H7B5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H877-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7B5/entry#A0A9J7H877-1", "sequence": { "sequence": "MARSRSRSPRWKQRSLSPQSRNFEYYEERHFHGHYDPEYRNDPKRSFAWRVDDEKHGQNKPRIPPRVNPYYRSYENRSPSPNVKSVEKFDTYKPHQEYFPGRGDDDRRSQYMPTYSESATSYTEHDRDCYPPQMQGRYIPDEHRGRGSGRGGKPPEMSLEDSFRFEEAWHEDELRHQRVQEESYPQSPRRGSEDFDARNPFQKRYPEDHDFRKYSYTSKRPTDAARYENREPSRIPKWKPEHSFVPFQEKNEDWSFGSQSHRYTEREYPEISSATKVSYDYRHKHHKLSDSEQDFPDGRFQKYLKEEDRKYSSLKVPGNRESDCFSAARGRENENEQASGPFQLYKKDCVSYTNTNIKEADLGPCNDKWKRKLKEDCRKESASSSKQLRASPKPEDKRYSFVKKKSLTVKVDVNNIDTFRSTSRYSAERQVSHDLVAVGRKNDNFHPVFQHLDSPQNPENKPTEEFTQEIITIIHEVKASCSATSDITLHERFSRMQSRHPDFDEMALSSDPEFHRNHQCPSFSKVKTVRVDGFQKPPHFIKSNFRKFIQKPYINYPMQRKDAITRKRFRVEENHQNRRGSKRSFKNFLGGRFQPHFKSHLVQKSLYIQAKYQRLRFAGPRGFITNKFRNRFLRRKKCFPCLRGVGIHEYPVSEYSTIIYLKHLYYHSLQRKASLIKAGSIICL", "length": 684, "header": "tr|A0A9J7H877-1|A0A9J7H877_CRIGR Computationally mapped isoform of BCLAF1 and THRAP3 family member 3 isoform X6 OS=Cricetulus griseus OX=10029 GN=Bclaf3 PE=3 SV=1 CANONICAL=A0A9J7H7B5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JZ48-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7B5/entry#A0A9J7JZ48-1", "sequence": { "sequence": "MARSRSRSPRWKQRSLSPQSRNFEYYEERHFHGHYDPEYRNDPKRSFAWRVDDEKHGQNKPRIPPRVNPYYRSYENRSPSPNVKSVEKFDTYKPHQEYFPGRGDDDRRSQYMPTYSESATSYTEHDRDCYPPQMQGRYIPDEHRGRGSGRGGKPPEMSLEDSFRFEEAWHEDELRHQRVQEESYPQSPRRGSEDFDARNPFQKRYPEDHDFRKYSYTSKRPTDAARYENREPSRIPKWKPEHSFVPFQEKNEDWSFGSQSHRYTEREYPEISSATKVSYDYRHKHHKLSDSEQDFPDGRFQKYLKEEDRKYSSLKVPGNRESDCFSAARGRENENEQASGPFQLYKKDCVSYTNTNIKEADLGPCNDKWKRKLKEDCRKESASSSKQLRASPKPEDKRYSFVKKKSLTVKVDVNNIDTFRSTSRYSAERQVSHDLVAVGRKNDNFHPVFQHLDSPQNPENKPTEEFTQEIITIIHEVKASCSATSDITLHERFSRMQSRHPDFDEMALSSDPEFHRRIDMSLADLQNKQTMVYEPDETLVKVIDPNDLRHDIERRRKERLQNEDENIFHMASPTERNHQCPSFSKVKTVRVDGFQKPPHFIKSNFRKFIQKPYINYPMQRKDAITRKRFRVEENHQNRRGSKRSFKNFLGGRFQPHFKSHLVQKSLYIQAKYQRLRFAGPRGFITNKFRNRFLRRKKF", "length": 698, "header": "tr|A0A9J7JZ48-1|A0A9J7H7B5_CRIGR Computationally mapped isoform of BCLAF1 and THRAP3 family member 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Bclaf3 PE=3 SV=1 CANONICAL=A0A9J7H7B5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K0V5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7B5/entry#A0A9J7K0V5-1", "sequence": { "sequence": "MARSRSRSPRWKQRSLSPQSRNFEYYEERHFHGHYDPEYRNDPKRSFAWRVDDEKHGQNKPRIPPRVNPYYRSYENRSPSPNVKSVEKFDTYKPHQEYFPGRGDDDRRSQYMPTYSESATSYTEHDRDCYPPQMQGRYIPDEHRGRGSGRGGKPPEMSLEDSFRFEEAWHEDELRHQRVQEESYPQSPRRGSEDFDARNPFQKRYPEDHDFRKYSYTSKRPTDAARYENREPSRIPKWKPEHSFVPFQEKNEDWSFGSQSHRYTEREYPEISSATKVSYDYRHKHHKLSDSEQDFPDGRFQKYLKEEDRKYSSLKVPGNRESDCFSAARGRENENEQASGPFQLYKKDCVSYTNTNIKEADLGPCNDKWKRKLKEDCRKESASSSKQLRASPKPEDKRYSFVKKKSLTVKVDVNNIDTFRSTSRYSAERQVSHDLVAVGRKNDNFHPVFQHLDSPQNPENKPTEEFTQEIITIIHEVKASCSATSDITLHERFSRMQSRHPDFDEMALSSDPEFHRRIDMSLADLQNKQTMVYEPDETLVKVIDPNDLRHDIERRRKERLQNEDENIFHMASPTERNHQCPSFSKNYPMQRKDAITRKRFRVEENHQNRRGSKRSFKF", "length": 618, "header": "tr|A0A9J7K0V5-1|A0A9J7H7B5_CRIGR Computationally mapped isoform of BCLAF1 and THRAP3 family member 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Bclaf3 PE=3 SV=1 CANONICAL=A0A9J7H7B5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K244-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7B5/entry#A0A9J7K244-1", "sequence": { "sequence": "MARSRSRSPRWKQRSLSPQSRNFEYYEERHFHGHYDPEYRNDPKRSFAWRVDDEKHGQNKPRIPPRVNPYYRSYENRSPSPNVKSVEKFDTYKPHQEYFPGRGDDDRRSQYMPTYSESATSYTEHDRDCYPPQMQGRYIPDEHRGRGSGRGGKPPEMSLEDSFRFEEAWHEDELRHQRVQEESYPQSPRRGSEDFDARNPFQKRYPEDHDFRKYSYTSKRPTDAARYENREPSRIPKWKPEHSFVPFQEKNEDWSFGSQSHRYTEREYPEISSATKVSYDYRHKHHKLSDSEQDFPDGRFQKYLKEEDRKYSSLKVPGNRESDCFSAARGRENENEQASGPFQLYKKDCVSYTNTNIKEADLGPCNDKWKRKLKEDCRKESASSSKQLRASPKPEDKRYSFVKKKSLTVKVDVNNIDTFRSTSRYSAERQVSHDLVAVGRKNDNFHPVFQHLDSPQNPENKPTEEFTQEIITIIHEVKASCSATSDITLHERFSRMQSRHPDFDEMALSSDPEFHRRIDMSLADLQNKQTMVYEPDETLVKVIDPNDLRHDIERRRKERLQNEDENIFHMASPTERNHQCPSFSKVKTVRVDGFQKPPHFIKSNFRKFIQKPYINYPMQRKDAITRKRFRVEENHQNRRGSKRSFKGSKLKITYSQSFQDVC", "length": 662, "header": "tr|A0A9J7K244-1|A0A9J7H7B5_CRIGR Computationally mapped isoform of BCLAF1 and THRAP3 family member 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Bclaf3 PE=3 SV=1 CANONICAL=A0A9J7H7B5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K2C9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7B5/entry#A0A9J7K2C9-1", "sequence": { "sequence": "MARSRSRSPRWKQRSLSPQSRNFEYYEERHFHGHYDPEYRNDPKRSFAWRVDDEKHGQNKPRIPPRVNPYYRSYENRSPSPNVKSVEKFDTYKPHQEYFPGRGDDDRRSQYMPTYSESATSYTEHDRDCYPPQMQGRYIPDEHRGRGSGRGGKPPEMSLEDSFRFEEAWHEDELRHQRVQEESYPQSPRRGSEDFDARNPFQKRYPEDHDFRKYSYTSKRPTDAARYENREPSRIPKWKPEHSFVPFQEKNEDWSFGSQSHRYTEREYPEISSATKVSYDYRHKHHKLSDSEQDFPDGRFQKYLKEEDRKYSSLKVPGNRESDCFSAARGRENENEQASGPFQLYKKDCVSYTNTNIKEADLGPCNDKWKRKLKEDCRKESASSSKQLRASPKPEDKRYSFVKKKSLTVKVDVNNIDTFRSTSRYSAERQVSHDLVAVGRKNDNFHPVFQHLDSPQNPENKPTEEFTQEIITIIHEVKASCSATSDITLHERFSRMQSRHPDFDEMALSSDPEFHRRIDMSLADLQNKQTMVYEPDETLVKVIDPNDLRHDIERRRKERLQNEDENIFHMASPTERNHQCPSFSKVKTVRVDGFQKPPHFIKSNFRKFIQKPYINYPMQRKDAITRKRFRVEENHQNRRGSKRSFKF", "length": 647, "header": "tr|A0A9J7K2C9-1|A0A9J7H7B5_CRIGR Computationally mapped isoform of BCLAF1 and THRAP3 family member 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Bclaf3 PE=3 SV=1 CANONICAL=A0A9J7H7B5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K9W5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7B5/entry#A0A9J7K9W5-1", "sequence": { "sequence": "MARSRSRSPRWKQRSLSPQSRNFEYYEERHFHGHYDPEYRNDPKRSFAWRVDDEKHGQNKPRIPPRVNPYYRSYENRSPSPNVKSVEKFDTYKPHQEYFPGRGDDDRRSQYMPTYSESATSYTEHDRDCYPPQMQGRYIPDEHRGRGSGRGGKPPEMSLEDSFRFEEAWHEDELRHQRVQEESYPQSPRRGSEDFDARNPFQKRYPEDHDFRKYSYTSKRPTDAARYENREPSRIPKWKPEHSFVPFQEKNEDWSFGSQSHRYTEREYPEISSATKVSYDYRHKHHKLSDSEQDFPDGRFQKYLKEEDRKYSSLKVPGNRESDCFSAARGRENENEQASGPFQLYKKDCVSYTNTNIKEADLGPCNDKWKRKLKEDCRKESASSSKQLRASPKPEDKRYSFVKKKSLTVKVDVNNIDTFRSTSRYSAERQVSHDLVAVGRKNDNFHPVFQHLDSPQNPENKPTEEFTQEIITIIHEVKASCSATSDITLHERFSRMQSRHPDFDEMALSSDPEFHRRIDMSLADLQNKQTMVYEPDETLVKVIDPNDLRHDIERRRKERLQNEDENIFHMASPTERNHQCPSFSKNYPMQRKDAITRKRFRVEENHQNRRGSKRSFKNFLGGRFQPHFKSHLVQKSLYIQAKYQRLRFAGPRGFITNKFRNRFLRRKKCFPCLRGVGIHEYPVSEYSTIIYLKHLYYHSLQRKASLIKAGSIICL", "length": 715, "header": "tr|A0A9J7K9W5-1|A0A9J7H7B5_CRIGR Computationally mapped isoform of BCLAF1 and THRAP3 family member 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Bclaf3 PE=3 SV=1 CANONICAL=A0A9J7H7B5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KBW9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7B5/entry#A0A9J7KBW9-1", "sequence": { "sequence": "MARSRSRSPRWKQRSLSPQSRNFEYYEERHFHGHYDPEYRNDPKRSFAWRVDDEKHGQNKPRIPPRVNPYYRSYENRSPSPNVKSVEKFDTYKPHQEYFPGRGDDDRRSQYMPTYSESATSYTEHDRDCYPPQMQGRYIPDEHRGRGSGRGGKPPEMSLEDSFRFEEAWHEDELRHQRVQEESYPQSPRRGSEDFDARNPFQKRYPEDHDFRKYSYTSKRPTDAARYENREPSRIPKWKPEHSFVPFQEKNEDWSFGSQSHRYTEREYPEISSATKVSYDYRHKHHKLSDSEQDFPDGRFQKYLKEEDRKYSSLKVPGNRESDCFSAARGRENENEQASGPFQLYKKDCVSYTNTNIKEADLGPCNDKWKRKLKEDCRKESASSSKQLRASPKPEDKRYSFVKKKSLTVKVDVNNIDTFRSTSRYSAERQVSHDLVAVGRKNDNFHPVFQHLDSPQNPENKPTEEFTQEIITIIHEVKASCSATSDITLHERFSRMQSRHPDFDEMALSSDPEFHRRIDMSLADLQNKQTMVYEPDETLVKVIDPNDLRHDIERRRKERLQNEDENIFHMASPTERNHQCPSFSKNYPMQRKDAITRKRFRVEENHQNRRGSKRSFKGSKLKITYSQSFQDVC", "length": 633, "header": "tr|A0A9J7KBW9-1|A0A9J7H7B5_CRIGR Computationally mapped isoform of BCLAF1 and THRAP3 family member 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Bclaf3 PE=3 SV=1 CANONICAL=A0A9J7H7B5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KDB0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7B5/entry#A0A9J7KDB0-1", "sequence": { "sequence": "MARSRSRSPRWKQRSLSPQSRNFEYYEERHFHGHYDPEYRNDPKRSFAWRVDDEKHGQNKPRIPPRVNPYYRSYENRSPSPNVKSVEKFDTYKPHQEYFPGRGDDDRRSQYMPTYSESATSYTEHDRDCYPPQMQGRYIPDEHRGRGSGRGGKPPEMSLEDSFRFEEAWHEDELRHQRVQEESYPQSPRRGSEDFDARNPFQKRYPEDHDFRKYSYTSKRPTDAARYENREPSRIPKWKPEHSFVPFQEKNEDWSFGSQSHRYTEREYPEISSATKVSYDYRHKHHKLSDSEQDFPDGRFQKYLKEEDRKYSSLKVPGNRESDCFSAARGRENENEQASGPFQLYKKDCVSYTNTNIKEADLGPCNDKWKRKLKEDCRKESASSSKQLRASPKPEDKRYSFVKKKSLTVKVDVNNIDTFRSTSRYSAERQVSHDLVAVGRKNDNFHPVFQHLDSPQNPENKPTEEFTQEIITIIHEVKASCSATSDITLHERFSRMQSRHPDFDEMALSSDPEFHRNHQCPSFSKNYPMQRKDAITRKRFRVEENHQNRRGSKRSFKNFLGGRFQPHFKSHLVQKSLYIQAKYQRLRFAGPRGFITNKFRNRFLRRKKCFPCLRGVGIHEYPVSEYSTIIYLKHLYYHSLQRKASLIKAGSIICL", "length": 655, "header": "tr|A0A9J7KDB0-1|A0A9J7H7B5_CRIGR Computationally mapped isoform of BCLAF1 and THRAP3 family member 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Bclaf3 PE=3 SV=1 CANONICAL=A0A9J7H7B5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A061HV27", "url": "https://www.uniprot.org/uniprotkb/A0A061HV27" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A061HV27", "url": "https://www.uniprot.org/uniprotkb/A0A061HV27" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100752113", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752113", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1LX15-1", "protein_name": "BCLAF1 and THRAP3 family member 3", "gene_name": "BCLAF3", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MARSRSRSPRWRHRSLSPVPRSSEHYKQRFEHYGYDYRKDPKRPITWRMDDEKYGQSKPRISSHENIQYRSYEHRSPSPNIRGNSSEKFYTYKPPQVYLPERGDDSNRRAQYVPRHSEGMFYREHQRSCYPQKAQGRYIPDDRRNRRSEKGGTPPVRSTTDSFRFEGHWHEAEPRYQRIQDEKYSQSLRRGSEDFEKRISFQKRYPEDHDFRKYGHTSKRPHDVERYENREPARSPQWKSRHFSAPYQEKKDQRNLETQTYRYAPREFPETSSAAKVSCDSRHKYRKTSDGDKDFYDERAQKYPKEEDRKLGSQKGPVNRESSCSHAGRGRETEGGQVKESSKPSKKDCAALTHSDKSDVDLRSCKDTRKDKIKKERAGSKESSSSSNQLDNSDSDLKPSSVFLKKKSLTVKVDVQQGQNKSRVASSYSTERQMSHDLVAVGRKSEKFHPVFEHLDSTQNTENKPTGEFAQQIITIIHQVKANYFPPSEITLHERFSKIQVKKAADANETKLSSDPEIHRRIDMSLAELQSKQTMVYDSKQTLVKIIDPSDLRHDIERRRKERLQNEDEHIFHIASAAERSDQHSSFSRSKDTHVDEFQKPTSFEKSNFRKFIQKPCSSDTMQRKDVITHRPFVEENNQNTRGFRRPFKTNFRGGRFHFQHKSDLVQKSLYIQAKYQRLRFAGPRGFVTNKFRERLLRGKKEYTNIDPAI", "length": 710 }, "evidence": [ { "id": "A0A9J7H7B5", "url": "https://omabrowser.org/oma/group/A0A9J7H7B5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "A0A480NUY6-1", "protein_name": "BCLAF1 and THRAP3 family member 3", "gene_name": "BCLAF3", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MARSRSRSPRWKHRSLSPVPRSSEHYKQRHEHYGYEYRKDPKRPIAWRMDNEKHGQSKPRIPSRENTHYRSYEHRSPSPNLRRNSLENFYTYKPPQVYLPGRGDSNRRSQYMPKYSEGVLYKEHQRNCYPQKVQGRYIPDDHRVRGSGKGGKPPLRSIADSFRFEGQWHEDELRHQRIQDEKYSQSLRRGSEDFEKRSSFQKRYPEDRDFRKYGHTSKRPEDVERFENREAARSPQWKPRHFLPPYQEKKDQRNLGLQTHRHAPRELPESSSAAKVSCDYRHKHRKSSDGDQDFNDGRTQKYSKEEDRKFGSQKGPVARESSCSNAGRGRVTEDGQVKEPLKPSKKDCASSTHSNKSDVDLRPCNDKRKDKVKKEGAGRKESNSSHNQLDKGKKLSDMKASSAILRKKSLTVKVDVKKAVNTSRVASSYSTERQMSHDLVAVGRKSENFHPVFEHLDSTQNTENKPTGEFAQEIITIIHQVKANYFPSPKITLHERFSQMQDTQAADVNEIKLNSDPEIHRRIDMSLAELQSKQTMVYDSEQTLVKIIDPNDLRHDIERRRKERLQNEDEHIFHIASAAERSDQHSNFSRLKNTHIDGFQKPTCFVKSNFRKFIQKPYLNYHTIQRKDVVTHKPFGVEGNHQNTRGFRRPFKTNFRGGRFQPQYKSGLVQKSLYIQAKYQRLRFAGPRGFITNKFRERLLRKKKEYTNIAPAI", "length": 713 }, "evidence": [ { "id": "A0A9J7H7B5", "url": "https://omabrowser.org/oma/group/A0A9J7H7B5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A2AG58-1", "protein_name": "BCLAF1 and THRAP3 family member 3", "gene_name": "Bclaf3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MARSRSRSPRWKQRSLSPQSRNFEYHEERHFHGHYDPEYRHDQQRPFTWRMDDEKHGQNKPRIPPRVNSYHRSYVNRSPSPNVKPVEKFDTYKPHQEYFPGRGDDDRRSQYMPTYTESAATYMEHERDCYIPTVQGRYTPDDHRGRGRGSGRGEKPPQMSLGKPPKMSLGKPPQMSLADSLRFKEKWHEDELRHQRVQEESYPQSPRRGSEDFGTRNPFQKRYPEDHDFRKYGYTSKRPTDAARYENRDPARIPKWKPEHSFLPFQEKKEEWSFGAQGHRYTEREYPERSSTTRVSYDYRHKHHKLSESEQDFPDGRFHKHLKEEDRKYSSIKAPANRELDCFSTTRGREIENEQINGPFYLYNKNSVSYNHTNIKDADLEPCNDKWKKKISKEDCRKENASFSKQFDTSPKPEEKCYSLIKKKPLSVKVDRNKTDTFRSTSRYSAERQISHDLVAIGKTSDNFHPVFQHLDSTQNPENKPTEEFAQEIITLIHKVKADSFVTPDITLNERFSRIKNRQDADFNQTKSNSDPEFHRRIDMSLDDFQNKYTMVYEPDKTLVKVIEPNDLRHDIERRRKERLQNEDENIFHMASPTERNHQSPSFSKVKTIRADGFQKPPHFIKSNFRKFIQKPYINYTMQRKDAIDQKIFRVEENHQNRRGSKGSFKNFLGGRFQPHYKSHLVQKSMYIQAKYQRLRFAGPRGFITNKFRNRFLRKKKEYPVLPRTNNLELLQVEPTLYEDLTEHLIFVRNWN", "length": 752 }, "evidence": [ { "id": "A0A9J7H7B5", "url": "https://omabrowser.org/oma/group/A0A9J7H7B5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "A2AJT9-1", "protein_name": "BCLAF1 and THRAP3 family member 3", "gene_name": "BCLAF3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MARSRSRSPRWKHRSLSPVPRNAEHYKQRHSHGHYGCEYRKDPKRPVAWRMDSEKHGQSKPRIPSRGNIYYQSYEHRSPSPNIRNSLENVYMYKPHRGYSPGRGDSNRRAQYMPKYSEGIPYKEHERNSYPQKVQGGHSPDDHRVRGSGKGGKPPQRSIADSFRFEGKWHEDELRHQRIQEEKYSQSTRRGSEDFETRSSFQKRYPEDRDFRKYGHTSKRPKDVERYESREPARNPKWKPEHSLPPYQEDTDQWNLGPQTYRHAEREHPETSSATKVSYDYRHKRPKLLDGDQDFSDGRTQKYCKEEDRKYSFQKGPLNRELDCFNTGRGRETQDGQVKEPFKPSKKDSIACTYSNKNDVDLRSSNDKWKEKIKKEGDCRKESNSSSNQLDKSQKLPDVKPSPINLRKKSLTVKVDVKKTVDTFRVASSYSTERQMSHDLVAVGRKSENFHPVFEHLDSTQNTENKPTGEFAQEIITIIHQVKANYFPSPGITLHERFSTMQDIHKADVNEIPLNSDPEIHRRIDMSLAELQSKQAVIYESEQTLIKIIDPNDLRHDIERRRKERLQNEDEHIFHIASAAERDDQNSSFSKVKNVHTDGFQKPTHFIKSNFRKCIEKPYMNYTTQRKDIITHKPFEVEGNHRNTRVRPFKSNFRGGRCQPNYKSGLVQKSLYIQAKYQRLRFTGPRGFITHKFRERLMRKKKEYTDVATGI", "length": 711 }, "evidence": [ { "id": "A0A9J7H7B5", "url": "https://omabrowser.org/oma/group/A0A9J7H7B5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "F1NKX9-1", "protein_name": "BCLAF1 and THRAP3 family member 3", "gene_name": "CXorf23", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MTRSRSRSPRWKQRSLSPAFRSPEHHRQRHAHVNYDCEYKSFRKDLKKPMTWRTDDEKYGQSNSRFAPHGNNHQRMYERRSPSPNLKRIPMEDAYGHKPYRTHSSERTEGNRRCPLPPKYSEIPYKEHDRSFYQYKMEERYTFEHYKVTGNEKGIKPFHRPLGASCKFERKWHEDDLRHQRLHEEKYGQSPRRVSDEFTSRSSLQKRYPEDHDYREYGHTSKRAKEMERYDGGEVARNSKWKQERSFPPYQEKEEQRNLGAQSHRSTEREYSEGSVTKIAYEYSHKRRRHLDGEKSFTDDRAQKYVKQEDQKYGSSKGAWNNKKLDYFSGGRARQTEEGHVEVPAKYSSKKGCNACVNSSKMDVDLRPFKNKQKERVRKEGELRRKGDSSSSQHDSSHTVSDVKMSDVNCRREHLTIKVDMKKTVNRAASSHTTDRQMSHDLVAVGRKNENFHPVFKHMESVTRGVENDPSREFTQEIITIIHQIKANYFTSSDITLHERFSKIQDKPIPNMNEVKRSLDPEIHRRIDMSLAELQNKRTVPSESPQNIIRVLEDPNDLRHDIERRRKERLKNEDERAFHTDGTAPRNQQGCSFSRLQNSQLDGFQKPMRFIKPPFRKFIGKPHLNSYYSSRTNDAFPHRHIRGRLENTGPIRRHFKSNFADGRLQSHYKSGLVQKGLYIQAKYQRLRSVGVRGFTTNKYRDGFLRKEKGNLNIGTET", "length": 717 }, "evidence": [ { "id": "A0A9J7H7B5", "url": "https://omabrowser.org/oma/group/A0A9J7H7B5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H7B5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7B5" } ], "pmid": "" }, { "name": "transcription coregulator activity", "id": "GO:0003712", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003712", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H7B5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7B5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "positive regulation of transcription by RNA polymerase II", "id": "GO:0045944", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045944", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H7B5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7B5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mediator complex", "id": "GO:0016592", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016592", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H7B5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7B5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 76, "end_pos": 78, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 76, "end_pos": 78 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", 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"sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7HAF8-1", "uniprot_ac": "A0A9J7HAF8", "uniprot_id": "A0A9J7HAF8_CRIGR", "mass": { "chemical_mass": 34511.0, "monoisotopic_mass": 34511.0 }, "refseq": { "ac": "XP_035308281", "name": "epimerase family protein SDR39U1 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308281" }, "gene_names": [ { "name": "Sdr39u1", "type": "recommended", "evidence": [ { "id": "A0A9J7HAF8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAF8" } ] }, { "name": "Sdr39u1", "type": "synonym", "evidence": [ { "id": "XP_035308281", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308281" } ] } ], "protein_names": [ { "name": "Epimerase family protein SDR39U1 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7HAF8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAF8/entry#names_and_taxonomy" } ] }, { 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This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035308281", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308281" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HAF8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAF8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Sdr39u1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAF8", "locus": {} } ], "crossref": [ { "id": "A0A9J7HAF8", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HAF8", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd05242", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05242", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100767848", "url": "https://www.ncbi.nlm.nih.gov/gene/100767848", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001509", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001509", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR010099", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010099", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013549", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013549", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036291", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036291", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100767848", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767848", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HAF8", "url": "https://www.orthodb.org/?gene=A0A9J7HAF8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11092", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11092", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11092:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11092:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01370", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01370", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08338", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08338", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035308281", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308281", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A061IMS3", "url": "https://www.uniprot.org/uniprotkb/A0A061IMS3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A061IMS3-1", "url": "https://www.uniprot.org/uniprotkb/A0A061IMS3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HAF8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAF8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HAF8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAF8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRVLVGGGTGFIGTALTQLLKARGHEVTWVSRQPGPGRTTWVRPASARWVGGQFGREGQFFLCFLPQSELSRSGLPLCDVVINLAGENVLNPRRRWNEAFQKEVLTSRLDTTHLLAKAITKAEHPPRAWILVTGVAYYKPSPTEEYDEDSPGGNFDFFSNLVTKWEEAARLPGESTRQVVVRSGVVLGRGGGAIGQMLLPFRLGLGGPIGSGHQFFPWIHIGDLAGILIHALEANHVQGVLNGVAPASTTTNAEFAQALGAALGRPAFIPVPSIVVQAVFGRERATMLLEGQKVVPRRTLATGYQYSFPELGAALKDIVA", "length": 320, "header": "tr|A0A9J7HAF8-1|A0A9J7HAF8_CRIGR Isoform 1 of Epimerase family protein SDR39U1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Sdr39u1 PE=4 SV=1 CANONICAL=A0A9J7HAF8-1" }, "isoforms": [ { "isoform_ac": "A0A061IMS3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAF8/entry#A0A061IMS3-1", "sequence": { "sequence": "MRVLVGGGTGFIGTALTQLLKARGHEVTWVSRQPGPGRTTWSELSRSGLPLCDVVINLAGENVLNPRRRWNEAFQKEVLTSRLDTTHLLAKAITKAEHPPRAWILVTGVAYYKPSPTEEYDEDSPGGNFDFFSNLVTKWEEAARLPGESTRQVVVRSGVVLGRGGGAIGQMLLPFRLGLGGPIGSGHQFFPWIHIGDLAGILIHALEANHVQGVLNGVAPASTTTNAEFAQALGAALGRPAFIPVPSIVVQAVFGRERATMLLEGQKVVPRRTLATGYQYSFPELGAALKDIVA", "length": 294, "header": "tr|A0A061IMS3-1|A0A9J7HAF8_CRIGR Computationally mapped isoform of Epimerase family protein SDR39U1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Sdr39u1 PE=4 SV=1 CANONICAL=A0A9J7HAF8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HAF8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAF8/entry#A0A9J7HAF8-1", "sequence": { "sequence": "MRVLVGGGTGFIGTALTQLLKARGHEVTWVSRQPGPGRTTWVRPASARWVGGQFGREGQFFLCFLPQSELSRSGLPLCDVVINLAGENVLNPRRRWNEAFQKEVLTSRLDTTHLLAKAITKAEHPPRAWILVTGVAYYKPSPTEEYDEDSPGGNFDFFSNLVTKWEEAARLPGESTRQVVVRSGVVLGRGGGAIGQMLLPFRLGLGGPIGSGHQFFPWIHIGDLAGILIHALEANHVQGVLNGVAPASTTTNAEFAQALGAALGRPAFIPVPSIVVQAVFGRERATMLLEGQKVVPRRTLATGYQYSFPELGAALKDIVA", "length": 320, "header": "tr|A0A9J7HAF8-1|A0A9J7HAF8_CRIGR Isoform 1 of Epimerase family protein SDR39U1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Sdr39u1 PE=4 SV=1 CANONICAL=A0A9J7HAF8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7HD47-1", "uniprot_ac": "A0A9J7HD47", "uniprot_id": "A0A9J7HD47_CRIGR", "mass": { "chemical_mass": 23732.0, "monoisotopic_mass": 23732.0 }, "refseq": { "ac": "XP_035307980", "name": "ER membrane protein complex subunit 9 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307980" }, "gene_names": [ { "name": "Emc9", "type": "recommended", "evidence": [ { "id": "A0A9J7HD47", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HD47" } ] }, { "name": "Emc9", "type": "synonym", "evidence": [ { "id": "XP_035307980", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307980" } ] } ], "protein_names": [ { "name": "ER membrane protein complex subunit 9 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035307980", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307980" }, { "id": "A0A9J7HD47", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HD47/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035307980", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307980" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HD47", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HD47" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Emc9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HD47", "locus": {} } ], "crossref": [ { "id": "A0A9J7HD47", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HD47", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd08060", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08060", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100761448", "url": "https://www.ncbi.nlm.nih.gov/gene/100761448", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR005366", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005366", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037518", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037518", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "CLSDCVP", "url": "https://omabrowser.org/oma/group/CLSDCVP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A3L7GSS2", "url": "https://www.orthodb.org/?gene=A0A3L7GSS2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12941", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12941", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12941:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12941:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03665", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03665", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035307980", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307980", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A3L7GSS2", "url": "https://www.uniprot.org/uniprotkb/A0A3L7GSS2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A3L7GSS2-1", "url": "https://www.uniprot.org/uniprotkb/A0A3L7GSS2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HD47", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HD47", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HD47-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HD47-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLEVALNQVDVWGAQAGLVVAGYYHANAALDDQRLPLSSAESEHLFLTAFKHQAIVRQAGPTLPGQLQGKATAVCTSRRPGRPGSALSWLLTPLIFPLHSPGLLALKIAGRIAEFFPDAVLIMLDNKKLVTRPRVPPVIVLENQGLRWVPKDKNLVMWRDWEESREMVGALLEGQAHRHLVDFDCHLDDIRQDWTNQQLNTQITQWGGPTSGNA", "length": 214, "header": "tr|A0A9J7HD47-1|A0A9J7HD47_CRIGR Isoform 1 of ER membrane protein complex subunit 9 isoform X2 OS=Cricetulus griseus OX=10029 GN=Emc9 PE=4 SV=1 CANONICAL=A0A9J7HD47-1" }, "isoforms": [ { "isoform_ac": "A0A3L7GSS2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HD47/entry#A0A3L7GSS2-1", "sequence": { "sequence": "MGEVEISARAYGKMCLHASRYPYAAVNGLLLAPAPRSGECLCLTDCVPLFHSNLALSVMLEVALNQVDVWGAQAGLVVAGYYHANAALDDQSPGLLALKIAGRIAEFFPDAVLIMLDNKKLVTRPRVPPVIVLENQGLRWVPKDKNLVMWRDWEESREMVGALLEGQAHRHLVDFDCHLDDIRQDWTNQQLNTQITQWGGPTSGNA", "length": 206, "header": "tr|A0A3L7GSS2-1|A0A9J7HD47_CRIGR Computationally mapped isoform of ER membrane protein complex subunit 9 isoform X2 OS=Cricetulus griseus OX=10029 GN=Emc9 PE=4 SV=1 CANONICAL=A0A9J7HD47-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HD47-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HD47/entry#A0A9J7HD47-1", "sequence": { "sequence": "MLEVALNQVDVWGAQAGLVVAGYYHANAALDDQRLPLSSAESEHLFLTAFKHQAIVRQAGPTLPGQLQGKATAVCTSRRPGRPGSALSWLLTPLIFPLHSPGLLALKIAGRIAEFFPDAVLIMLDNKKLVTRPRVPPVIVLENQGLRWVPKDKNLVMWRDWEESREMVGALLEGQAHRHLVDFDCHLDDIRQDWTNQQLNTQITQWGGPTSGNA", "length": 214, "header": "tr|A0A9J7HD47-1|A0A9J7HD47_CRIGR Isoform 1 of ER membrane protein complex subunit 9 isoform X2 OS=Cricetulus griseus OX=10029 GN=Emc9 PE=4 SV=1 CANONICAL=A0A9J7HD47-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 210, "start_aa": "Thr", "end_pos": 210, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr210", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A3L7GSS2", "url": "https://www.uniprot.org/uniprotkb/A0A3L7GSS2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A3L7GSS2", "url": "https://www.uniprot.org/uniprotkb/A0A3L7GSS2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [], "orthologs": [ { "uniprot_canonical_ac": "F1SGM2-1", "protein_name": "ER membrane protein complex subunit 9", "gene_name": "EMC9", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MGEVEISARAYVKMCLHAARYPHAAVNGLLLAPAPRSGECLCLTDCVPLFHSHLALSVMLEVALNQVDVWGAQAGLVVAGYYHANAALDDQSPGPLALKIAGRIAEFFPDAVLIMLDNQKLVPQPHVPPVIVLENHGLRWVPKDKNLVMWRDWEESRQMVGALLEGRAHQHLVDFDCHLDDIREDWTNQQLNVQITQWVGSTSGKT", "length": 206 }, "evidence": [ { "id": "A0A9J7HD47", "url": "https://omabrowser.org/oma/group/A0A9J7HD47/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q5U1W7-1", "protein_name": "ER membrane protein complex subunit 9", "gene_name": "Emc9", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MGEVEISARAYGKMCLHASRYPHAAVNGLLLAPATRSGECLCLTDCVPLFHSHLALSVMLEVALNQVDVWATQAGLVVAGYYHANAVLDDQSPGPLALKIAGRIAEFFPNAVLIMLDNKKLVTWPRVPPVIVLENQGLQWVPKDKNLVMWRDWEESRQMVGALLEGRAHQHLVDFDCHLDDIRQDWTNQRLNTQITQWSGSTDGHA", "length": 206 }, "evidence": [ { "id": "A0A9J7HD47", "url": "https://omabrowser.org/oma/group/A0A9J7HD47/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9DB76-1", "protein_name": "ER membrane protein complex subunit 9", "gene_name": "Emc9", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MGEVEISARAYGKMCLHASRYPHAAVNGLLLAPATGSGECLCLTDCVPLFHSHLALSVMLEVALNQVDVWGAQAGLVVAGYYHANAVLDDQSPGPLALKIAGRIAEFFPRAVLIMLDNKKLVTRPRVPPVIVLENQGLQWVPKDKNLVMWRDWEESRQMVGALLEGRAHQHLVDFDCHLDDIRQDWTNQRLNTQITQWSGSTDGNA", "length": 206 }, "evidence": [ { "id": "A0A9J7HD47", "url": "https://omabrowser.org/oma/group/A0A9J7HD47/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9Y3B6-1", "protein_name": "ER membrane protein complex subunit 9", "gene_name": "EMC9", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MGEVEISALAYVKMCLHAARYPHAAVNGLFLAPAPRSGECLCLTDCVPLFHSHLALSVMLEVALNQVDVWGAQAGLVVAGYYHANAAVNDQSPGPLALKIAGRIAEFFPDAVLIMLDNQKLVPQPRVPPVIVLENQGLRWVPKDKNLVMWRDWEESRQMVGALLEDRAHQHLVDFDCHLDDIRQDWTNQRLNTQITQWVGPTNGNGNA", "length": 208 }, "evidence": [ { "id": "A0A9J7HD47", "url": "https://omabrowser.org/oma/group/A0A9J7HD47/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "EMC complex", "id": "GO:0072546", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0072546", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HD47", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HD47" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "tail-anchored membrane protein insertion into ER membrane", "id": "GO:0071816", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071816", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HD47", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HD47" } ], "pmid": "" }, { "name": "protein insertion into ER membrane by stop-transfer membrane-anchor sequence", "id": "GO:0045050", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045050", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HD47", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HD47" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "membrane insertase activity", "id": "GO:0032977", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032977", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HD47", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HD47" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 210 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7HCL4-1", "uniprot_ac": "A0A9J7HCL4", "uniprot_id": "A0A9J7HCL4_CRIGR", "mass": { "chemical_mass": 138339.0, "monoisotopic_mass": 138339.0 }, "refseq": { "ac": "XP_035308172", "name": "spermatogenesis-associated protein 13 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308172" }, "gene_names": [ { "name": "Spata13", "type": "recommended", "evidence": [ { "id": "A0A9J7HCL4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCL4" } ] }, { "name": "Spata13", "type": "synonym", "evidence": [ { "id": "XP_035308172", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308172" } ] } ], "protein_names": [ { "name": "Spermatogenesis-associated protein 13 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7HCL4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCL4/entry#names_and_taxonomy" } ] }, { "name": "spermatogenesis-associated protein 13 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_035308172", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308172" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035308172", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308172" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCL4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCL4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Spata13", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCL4", "locus": {} } ], "crossref": [ { "id": "A0A9J7HCL4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HCL4", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00160", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00160", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd01224", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01224", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd11973", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11973", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "113830662", "url": "https://www.ncbi.nlm.nih.gov/gene/113830662", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000219", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000219", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001331", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001331", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001849", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035899", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035899", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036028", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036028", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055251", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055251", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113830662", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113830662", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HCL4", "url": "https://www.orthodb.org/?gene=A0A9J7HCL4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47544", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47544", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47544:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47544:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00018", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00018", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00621", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00621", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22697", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22697", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035308172", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308172", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2LLH0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LLH0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LLH0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LLH0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HAC9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAC9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HAC9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAC9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HCL4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCL4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HCL4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCL4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTTAQDGHGQGATATCSASNPKAPKMVTSSACQNGSCKSSPSSDSEAAESRLSPSKLARLFSGSRKKMSAHPERPRSVVLVGNSSTWNALASFRKMGSFKKLKSSVLQGIQNREWADVSKEEAAGDPGRTAPNGTITILGRGLARCQSLGPAVDGTGSDCSDPEDTEDAFQRSTHRSRSIRRAYGLGRISLLDLGRQPAPEPALCEIHVSDPEPSGAVPLPRRSKSIDSLSILKSSFKRKSASNLTELPGDRQVPPRTLSSLSADSEKPGGSQRRTRRWRSPIRAKDFDRVLRLVSNVKDAAWKREAPRSAAPSPGPGDANPPLGPRSKLHDDYSRHTSSSVEPDVRRGGPLSTPGVPAPCTVATNVAQEPHLDVDTAVFPLETKSAQPLGNDEPPASSPSPSLTDPEGLSQASSEATAGSQLPFDPVQLPTPLRPTTPKPQSPQSPGSTKCPSSVSVLSLSSADSEERTEDTAHRQLGPVPLQDAVRTTAGDEGRQSSNSYFPMNLHGAASPEERKEEVRVVNEDDWQQGSAQEEEQTQVPRISRRSWGSGRLTRPRPLSDYGQLVSRSLSIPEDAIAVDPPDDDHVDKMHPSRVTTTSQDPRAPSGCSRGGRRRRPISVIGGVSFYGNTQAEDVENLLVQPAARPPVPAHQVPPYKAVSARLRPFTFSQSTPIGLDRVGRRRQMKASNVSSDGGAESSALVDDNGSEEDFSYEELCQANPRYLQPGGEQLAINELISDGSVVCAEALWDHVTMDDQELGFKAGDVIQVLEASNKDWWWGRNEDKEAWFPASFVRLRVNQEELPESCSSTHGEEQDEDTSKARHKHPESQQQMRTNVIQEIMNTERVYIKHLKDICEGYIRQCRKHTGMFTVAQLATIFGNIEDIYKFQRKFLKDLEKQYNKEEPHLSEIGSCFLQHQEGFAIYSEYCNNHPGACVELSNLMKQSKYRHFFEACRLLQQMIDIALDGFLLTPVQKICKYPLQLAELLKYTTQEHSDYNNIKAAYEAMKNVACLINERKRKLESIDKIARWQVSIVGWEGLDILDRSSELIHSGELTKITRQGKSQQRIFFLFDHQLVSCKKDLLRRDMLYYKGRMDMDEVELVDVEDGRDKDWNLSMRNAFKLVSRTTDEVHLFCARKQEDKARWLQAYADERQRVQEDQQMGMEIPENQKKLAMLNAQKAGHGKSKGYGSCPVAPPHQSLLPVHQRHITVPTSIPQQQVFALAEPKRKPSLFWHTFHKLTPFRK", "length": 1246, "header": "tr|A0A9J7HCL4-1|A0A9J7HCL4_CRIGR Isoform 1 of Spermatogenesis-associated protein 13 isoform X1 OS=Cricetulus griseus OX=10029 GN=Spata13 PE=4 SV=1 CANONICAL=A0A9J7HCL4-1" }, "isoforms": [ { "isoform_ac": "A0A8C2LLH0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCL4/entry#A0A8C2LLH0-1", "sequence": { "sequence": "MVARGEIARFWSLESLHMVSSDGGAESSALVDDNGSEEDFSYEELCQANPRYLQPGGEQLAINELISDGSVVCAEALWDHVTMDDQELGFKAGDVIQVLEASNKDWWWGRNEDKEAWFPASFVRLRVNQEELPESCSSTHGEEQDEDTSKARHKHPESQQQMRTNVIQEIMNTERVYIKHLKDICEGYIRQCRKHTGMFTVAQLATIFGNIEDIYKFQRKFLKDLEKQYNKEEPHLSEIGSCFLQHQEGFAIYSEYCNNHPGACVELSNLMKQSKYRHFFEACRLLQQMIDIALDGFLLTPVQKICKYPLQLAELLKYTTQEHSDYNNIKAAYEAMKNVACLINERKRKLESIDKIARWQVSIVGWEGLDILDRSSELIHSGELTKITRQGKSQQRIFFLFDHQLVSCKKDLLRRDMLYYKGRMDMDEVELVDVEDGRDKDWNLSMRNAFKLVSRTTDEVHLFCARKQEDKARWLQAYADERQRVQEDQQMGMEIPENQKKLAMLNAQKAGHGKSKGYGSCPVAPPHQSLLPVHQRHITVPTSIPQQQVFALAEPKRKPSLFWHTFHKLTPFRK", "length": 574, "header": "tr|A0A8C2LLH0-1|A0A9J7HCL4_CRIGR Computationally mapped isoform of Spermatogenesis-associated protein 13 isoform X1 OS=Cricetulus griseus OX=10029 GN=Spata13 PE=4 SV=1 CANONICAL=A0A9J7HCL4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HAC9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCL4/entry#A0A9J7HAC9-1", "sequence": { "sequence": "MTTAQDGHGQGATATCSASNPKAPKMVTSSACQNGSCKSSPSSDSEAAESRLSPSKLARLFSGSRKKMSAHPERPRSVVLVGNSSTWNALASFRKMGSFKKLKSSVLQGIQNREWADVSKEEAAGDPGRTAPNGTITILGRGLARCQSLGPAVDGTGSDCSDPEDTEDAFQRSTHRSRSIRRAYGLGRISLLDLGRQPAPEPALCEIHVSDPEPSGAVPLPRRSKSIDSLSILKSSFKRKSASNLTELPGDRQVPPRTLSSLSADSEKPGGSQRRTRRWRSPIRAKDFDRVLRLVSNVKDAAWKREAPRSAAPSPGPGDANPPLGPRSKLHDDYSRHTSSSVEPDVRRGGPLSTPGVPAPCTVATNVAQEPHLDVDTAVFPLETKSAQPLGNDEPPASSPSPSLTDPEGLSQASSEATAGSQLPFDPVQLPTPLRPTTPKPQSPQSPGSTKCPSSVSVLSLSSADSEERTEDTAHRQLGPVPLQDAVRTTAGDEGRQSSNSYFPMNLHGAASPEERKEEVVNEDDWQQGSAQEEEQTQVPRISRRSWGSGRLTRPRPLSDYGQLVSRSLSIPEDAIAVDPPDDDHVDKMHPSRVTTTSQDPRAPSGCSRGGRRRRPISVIGGVSFYGNTQAEDVENLLVQPAARPPVPAHQVPPYKAVSARLRPFTFSQSTPIGLDRVGRRRQMKASNVSSDGGAESSALVDDNGSEEDFSYEELCQANPRYLQPGGEQLAINELISDGSVVCAEALWDHVTMDDQELGFKAGDVIQVLEASNKDWWWGRNEDKEAWFPASFVRLRVNQEELPESCSSTHGEEQDEDTSKARHKHPESQQQMRTNVIQEIMNTERVYIKHLKDICEGYIRQCRKHTGMFTVAQLATIFGNIEDIYKFQRKFLKDLEKQYNKEEPHLSEIGSCFLQHQEGFAIYSEYCNNHPGACVELSNLMKQSKYRHFFEACRLLQQMIDIALDGFLLTPVQKICKYPLQLAELLKYTTQEHSDYNNIKAAYEAMKNVACLINERKRKLESIDKIARWQVSIVGWEGLDILDRSSELIHSGELTKITRQGKSQQRIFFLFDHQLVSCKKDLLRRDMLYYKGRMDMDEVELVDVEDGRDKDWNLSMRNAFKLVSRTTDEVHLFCARKQEDKARWLQAYADERQRVQEDQQMGMEIPENQKKLAMLNAQKAGHGKSKGYGSCPVAPPHQSLLPVHQRHITVPTSIPQQQVFALAEPKRKPSLFWHTFHKLTPFRK", "length": 1244, "header": "tr|A0A9J7HAC9-1|A0A9J7HAC9_CRIGR Computationally mapped isoform of Spermatogenesis-associated protein 13 isoform X2 OS=Cricetulus griseus OX=10029 GN=Spata13 PE=4 SV=1 CANONICAL=A0A9J7HCL4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HCL4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCL4/entry#A0A9J7HCL4-1", "sequence": { "sequence": "MTTAQDGHGQGATATCSASNPKAPKMVTSSACQNGSCKSSPSSDSEAAESRLSPSKLARLFSGSRKKMSAHPERPRSVVLVGNSSTWNALASFRKMGSFKKLKSSVLQGIQNREWADVSKEEAAGDPGRTAPNGTITILGRGLARCQSLGPAVDGTGSDCSDPEDTEDAFQRSTHRSRSIRRAYGLGRISLLDLGRQPAPEPALCEIHVSDPEPSGAVPLPRRSKSIDSLSILKSSFKRKSASNLTELPGDRQVPPRTLSSLSADSEKPGGSQRRTRRWRSPIRAKDFDRVLRLVSNVKDAAWKREAPRSAAPSPGPGDANPPLGPRSKLHDDYSRHTSSSVEPDVRRGGPLSTPGVPAPCTVATNVAQEPHLDVDTAVFPLETKSAQPLGNDEPPASSPSPSLTDPEGLSQASSEATAGSQLPFDPVQLPTPLRPTTPKPQSPQSPGSTKCPSSVSVLSLSSADSEERTEDTAHRQLGPVPLQDAVRTTAGDEGRQSSNSYFPMNLHGAASPEERKEEVRVVNEDDWQQGSAQEEEQTQVPRISRRSWGSGRLTRPRPLSDYGQLVSRSLSIPEDAIAVDPPDDDHVDKMHPSRVTTTSQDPRAPSGCSRGGRRRRPISVIGGVSFYGNTQAEDVENLLVQPAARPPVPAHQVPPYKAVSARLRPFTFSQSTPIGLDRVGRRRQMKASNVSSDGGAESSALVDDNGSEEDFSYEELCQANPRYLQPGGEQLAINELISDGSVVCAEALWDHVTMDDQELGFKAGDVIQVLEASNKDWWWGRNEDKEAWFPASFVRLRVNQEELPESCSSTHGEEQDEDTSKARHKHPESQQQMRTNVIQEIMNTERVYIKHLKDICEGYIRQCRKHTGMFTVAQLATIFGNIEDIYKFQRKFLKDLEKQYNKEEPHLSEIGSCFLQHQEGFAIYSEYCNNHPGACVELSNLMKQSKYRHFFEACRLLQQMIDIALDGFLLTPVQKICKYPLQLAELLKYTTQEHSDYNNIKAAYEAMKNVACLINERKRKLESIDKIARWQVSIVGWEGLDILDRSSELIHSGELTKITRQGKSQQRIFFLFDHQLVSCKKDLLRRDMLYYKGRMDMDEVELVDVEDGRDKDWNLSMRNAFKLVSRTTDEVHLFCARKQEDKARWLQAYADERQRVQEDQQMGMEIPENQKKLAMLNAQKAGHGKSKGYGSCPVAPPHQSLLPVHQRHITVPTSIPQQQVFALAEPKRKPSLFWHTFHKLTPFRK", "length": 1246, "header": "tr|A0A9J7HCL4-1|A0A9J7HCL4_CRIGR Isoform 1 of Spermatogenesis-associated protein 13 isoform X1 OS=Cricetulus griseus OX=10029 GN=Spata13 PE=4 SV=1 CANONICAL=A0A9J7HCL4-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 354, "start_aa": "Thr", "end_pos": 354, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr354", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LLH0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LLH0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LLH0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LLH0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:113830662", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113830662", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCL4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCL4" } ], "pmid": "" }, { "name": "ruffle membrane", "id": "GO:0032587", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032587", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCL4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCL4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "intracellular signal transduction", "id": "GO:0035556", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035556", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCL4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCL4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005085", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCL4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCL4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1115, "end_pos": 1117, "annotation": "n_glycosylation_sequon" }, { "start_pos": 133, "end_pos": 135, "annotation": "n_glycosylation_sequon" }, { "start_pos": 244, "end_pos": 246, "annotation": "n_glycosylation_sequon" }, { "start_pos": 34, "end_pos": 36, "annotation": "n_glycosylation_sequon" }, { "start_pos": 690, "end_pos": 692, "annotation": "n_glycosylation_sequon" }, { "start_pos": 706, "end_pos": 708, "annotation": "n_glycosylation_sequon" }, { "start_pos": 83, "end_pos": 85, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7HCL4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCL4" }, { "id": "PS50010", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50010" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DH", "eco_id": "ECO_0000259", "start_pos": 834, "end_pos": 1018, "start_aa": "Met", "end_aa": "Arg", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7HCL4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCL4" }, { "id": "PS50003", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50003" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PH", "eco_id": "ECO_0000259", "start_pos": 1049, "end_pos": 1155, "start_aa": "Glu", "end_aa": "Gln", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7HCL4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCL4" }, { "id": "PS50002", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50002" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SH3", "eco_id": "ECO_0000259", "start_pos": 741, "end_pos": 800, "start_aa": "Gly", "end_aa": "Asn", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 354 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1115, "end_pos": 1117 }, { "start_pos": 133, "end_pos": 135 }, { "start_pos": 244, "end_pos": 246 }, { "start_pos": 34, "end_pos": 36 }, { "start_pos": 690, "end_pos": 692 }, { "start_pos": 706, "end_pos": 708 }, { "start_pos": 83, "end_pos": 85 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7HCA3-1", "uniprot_ac": "A0A9J7HCA3", "uniprot_id": "A0A9J7HCA3_CRIGR", "mass": { "chemical_mass": 68703.0, "monoisotopic_mass": 68703.0 }, "refseq": { "ac": "XP_027250427", "name": "transcriptional repressor p66-alpha isoform X8", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250427" }, "gene_names": [ { "name": "Gatad2a", "type": "recommended", "evidence": [ { "id": "A0A9J7HCA3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCA3" } ] }, { "name": "Gatad2a", "type": "synonym", "evidence": [ { "id": "XP_027250427", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250427" } ] } ], "protein_names": [ { "name": "Transcriptional repressor p66-alpha isoform X8", "type": "synonym", "evidence": [ { "id": "A0A9J7HCA3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCA3/entry#names_and_taxonomy" } ] }, { "name": "transcriptional repressor p66-alpha isoform X8", "type": "synonym", "evidence": [ { "id": "XP_027250427", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250427" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027250427", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250427" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCA3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCA3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Gatad2a", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCA3", "locus": {} } ], "crossref": [ { "id": "100757004", "url": "https://www.ncbi.nlm.nih.gov/gene/100757004", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR032346", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032346", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040386", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040386", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100757004", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757004", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HCA3", "url": "https://www.orthodb.org/?gene=A0A9J7HCA3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13455", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13455", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13455:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13455:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF16563", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16563", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027250427", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250427", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MI16", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MI16", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MI16-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MI16-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F3W3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3W3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F3W3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3W3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F692", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F692", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F692-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F692-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F877", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F877", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F877-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F877-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F946", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F946", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F946-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F946-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HCA3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCA3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HCA3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCA3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J8S2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8S2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J8S2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8S2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KEI6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEI6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KEI6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEI6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSEEACRTRSQKRALDPDLTEDDVDSKKMKMERGPSELTVDGDTRVMPEPCTGPAHGLLRTTETTATGSGEGLLGDGPVDMRTSHSDIKSEKRPPSPDVIVLSDSEQPSSPRMNGLTTAALKDTSTEALLKSSPEERERMIKQLKEELRLEEAKLVLLKKLRQSQIQKEAIVQKPAASSGSTVTTPPPLVRGNQNIPAGKTSLQTSSARMPGSIIPPPLVRGGQQVSAKLGPQASSQVVMPPLVRGAQWHFLSPVSQQIHNIRQHSSTGPPPLLLAPRASVPSMQIQGQRIIQQGLIRVANVPNTSLLVNIPQPTAASLKGTTVASAQASSTPTSVASVVASAESPASRQAAAKLALRKQLEKTLLEIPPPKPPAPEMNFLPSAANNEFIYLVGLEEVVQNLLETQAGRISASTAAAVLSREPYMCVQCKTDFTCRWREKGGVVMCENCMTSNQKKALKVEHTSRLKAAFVKALQQEQEMEQRLLQQGVGTTGTKAEPAAPHTTLKQVIKPRRKLAFRSGEARDWSNGAVLQASSQLSRGSATTPRGVLHTFSQSPKLQNAASATALVSRTARHSERAVSTSKGTTSNWKKTTLSTGGTLAFVSPSLAVHKTSSAVDRQREYLLDMIPPRSIPQSATWK", "length": 639, "header": "tr|A0A9J7HCA3-1|A0A9J7HCA3_CRIGR Isoform 1 of Transcriptional repressor p66-alpha isoform X8 OS=Cricetulus griseus OX=10029 GN=Gatad2a PE=4 SV=1 CANONICAL=A0A9J7HCA3-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MI16-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCA3/entry#A0A8C2MI16-1", "sequence": { "sequence": "MSEEACRTRSQKRALDPDLTEDDVDSKKMKMERGPSELTVDGDTRVMPEPCTGPAHGLLRTTETTATGSGEGLLGDGPVDMRTSHSDIKSEKRPPSPDVIVLSDSEQPSSPRMNGLTTAALKDTSTEALLKSSPEERERMIKQLKEELRLEEAKLVLLKKLRQSQIQKEAIVQKPAASSGSTVTTPPPLVRGNQNIPAGKTSLQTSSARMPGSIIPPPLVRGGQQVSAKLGPQASSQVVMPPLVRGAQQIHNIRQHSSTGPPPLLLAPRASVPSMQIQGQRIIQQGLIRVANVPNTSLLVNIPQPTAASLKGTTVASAQASSTPTSVASVVASAESPASRQAAAKLALRKQLEKTLLEIPPPKPPAPEMNFLPSAANNEFIYLVGLEEVVQNLLETQAGRISASTAAAVLSREPYMCVQCKTDFTCRWREKGGVVMCENCMTSNQKKALKVEHTSRLKAAFVKALQQEQEMEQRLLQQGVGTTGTKAEPAAPHTTLKQVIKPRRKLAFRSGEARDWSNGAVLQASSQLSRGSATTPRGVLHTFSQSPKLQNAASATALVSRTARHSERAVSTSKGTTSNWKKTTLSTGGTLAFVSPSLAVHKTSSAVDRQREYLLDMIPPRSIPQSATWK", "length": 630, "header": "tr|A0A8C2MI16-1|A0A9J7HCA3_CRIGR Computationally mapped isoform of Transcriptional repressor p66-alpha isoform X8 OS=Cricetulus griseus OX=10029 GN=Gatad2a PE=4 SV=1 CANONICAL=A0A9J7HCA3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F3W3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCA3/entry#A0A9J7F3W3-1", "sequence": { "sequence": "MSEEACRTRSQKRALDPDLTEDDVDSKKMKMERGPSELTVDGDTRVMPEPCTGPAHGLLRTTETTATGSGEGLLGDGPVDMRTSHSDIKSEKRPPSPDVIVLSDSEQPSSPRMNGLTTAALKDTSTEALLKSSPEERERMIKQLKEELRLEEAKLVLLKKLRQSQIQKEAIVQKPAASSGSTVTTPPPLVRGNQNIPAGKTSLQTSSARMPGSIIPPPLVRGGQQVSAKLGPQASSQVVMPPLVRGAQWHFLSPVSQQIHNIRQHSSTGPPPLLLAPRASVPSMQIQGQRIIQQGLIRVANVPNTSLLVNIPQPTAASLKGTTVASAQASSTPTSVASVVASAESPASRQAAAKLALRKQLEKTLLEIPPPKPPAPEMNFLPSAANNEFIYLVGLEEVVQNLLETQAGRISASTAAAVLSREPYMCVQCKTDFTCRWREKGGVVMCENCMTSNQKKALKVEHTSRLKAAFVKALQQEQEMEQRLLQQGVGTTGTKAEPAAPHTTLKQASSQLSRGSATTPRGVLHTFSQSPKLQNAASATALVSRTARHSERAVSTSKGTTSNWKKTTLSTGGTLAFVSPSLAVHKTSSAVDRQREYLLDMIPPRSIPQSATWK", "length": 614, "header": "tr|A0A9J7F3W3-1|A0A9J7HCA3_CRIGR Computationally mapped isoform of Transcriptional repressor p66-alpha isoform X8 OS=Cricetulus griseus OX=10029 GN=Gatad2a PE=4 SV=1 CANONICAL=A0A9J7HCA3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F692-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCA3/entry#A0A9J7F692-1", "sequence": { "sequence": "MSEEACRTRSQKRALDPDLTEDDVDSKKMKMERGPSELTVDGDTRVMPEPCTGPAHGLLRTTETTATGSGEGLLGDGPVDMRTSHSDIKSEKRPPSPDVIVLSDSEQPSSPRMNGLTTAALKDTSTEALLKSSPEERERMIKQLKEELRLEEAKLVLLKKLRQSQIQKEAIVQKPAASSGSTVTTPPPLVRGNQNIPAGKTSLQTSSARMPGSIIPPPLVRGGQQVSAKLGPQASSQVVMPPLVRGAQIHNIRQHSSTGPPPLLLAPRASVPSMQIQGQRIIQQGLIRVANVPNTSLLVNIPQPTAASLKGTTVASAQASSTPTSVASVVASAESPASRQAAAKLALRKQLEKTLLEIPPPKPPAPEMNFLPSAANNEFIYLVGLEEVVQNLLETQAGRISASTAAAVLSREPYMCVQCKTDFTCRWREKGGVVMCENCMTSNQKKALKVEHTSRLKAAFVKALQQEQEMEQRLLQQGVGTTGTKAEPAAPHTTLKQVIKPRRKLAFRSGEARDWSNGAVLQASSQLSRGSATTPRGVLHTFSQSPKLQNAASATALVSRTARHSERAVSTSKGTTSNWKKTTLSTGGTLAFVSPSLAVHKTSSAVDRQREYLLDMIPPRSIPQSATWK", "length": 629, "header": "tr|A0A9J7F692-1|A0A9J7HCA3_CRIGR Computationally mapped isoform of Transcriptional repressor p66-alpha isoform X8 OS=Cricetulus griseus OX=10029 GN=Gatad2a PE=4 SV=1 CANONICAL=A0A9J7HCA3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F877-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCA3/entry#A0A9J7F877-1", "sequence": { "sequence": "MSEEACRTRSQKRALDPDLTEDDVDSKKMKMERGPSELTVDGDTRVMPEPCTGPAHGLLRTTETTATGSGEGLLGDGPVDMRTSHSDIKSEKRPPSPDVIVLSDSEQPSSPRMNGLTTAALKDTSTEALLKSSPEERERMIKQLKEELRLEEAKLVLLKKLRQSQIQKEAIVQKPAASSGSTVTTPPPLVRGNQNIPAGKTSLQTSSARMPGSIIPPPLVRGGQQVSAKLGPQASSQVVMPPLVRGAQWHFLSPVSQQIHNIRQHSSTGPPPLLLAPRASVPSMQIQGQRIIQQGLIRVANVPNTSLLVNIPQPTAASLKGTTVASAQASSTPTSVASVVASAESPASRQAAAKLALRKQLEKTLLEIPPPKPPAPEMNFLPSAANNEFIYLVGLEEVVQNLLETQGRISASTAAAVLSREPYMCVQCKTDFTCRWREKGGVVMCENCMTSNQKKALKVEHTSRLKAAFVKALQQEQEMEQRLLQQGVGTTGTKAEPAAPHTTLKQVIKPRRKLAFRSGEARDWSNGAVLQASSQLSRGSATTPRGVLHTFSQSPKLQNAASATALVSRTARHSERAVSTSKGTTSNWKKTTLSTGGTLAFVSPSLAVHKTSSAVDRQREYLLDMIPPRSIPQSATWK", "length": 638, "header": "tr|A0A9J7F877-1|A0A9J7HCA3_CRIGR Computationally mapped isoform of Transcriptional repressor p66-alpha isoform X8 OS=Cricetulus griseus OX=10029 GN=Gatad2a PE=4 SV=1 CANONICAL=A0A9J7HCA3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F946-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCA3/entry#A0A9J7F946-1", "sequence": { "sequence": "MSEEACRTRSQKRALDPDLTEDDVDSKKMKMERGPSELTVDGDTRVMPEPCTGPAHGLLRTTETTATGSGEGLLGDGPVDMRTSHSDIKSEKRPPSPDVIVLSDSEQPSSPRMNGLTTAALKDTSTEALLKSSPEERERMIKQLKEELRLEEAKLVLLKKLRQSQIQKEAIVQKPAASSGSTVTTPPPLVRGNQNIPAGKTSLQTSSARMPGSIIPPPLVRGGQQVSAKLGPQASSQVVMPPLVRGAQQIHNIRQHSSTGPPPLLLAPRASVPSMQIQGQRIIQQGLIRVANVPNTSLLVNIPQPTAASLKGTTVASAQASSTPTSVASVVASAESPASRQAAAKLALRKQLEKTLLEIPPPKPPAPEMNFLPSAANNEFIYLVGLEEVVQNLLETQGRISASTAAAVLSREPYMCVQCKTDFTCRWREKGGVVMCENCMTSNQKKALKVEHTSRLKAAFVKALQQEQEMEQRLLQQGVGTTGTKAEPAAPHTTLKQVIKPRRKLAFRSGEARDWSNGAVLQASSQLSRGSATTPRGVLHTFSQSPKLQNAASATALVSRTARHSERAVSTSKGTTSNWKKTTLSTGGTLAFVSPSLAVHKTSSAVDRQREYLLDMIPPRSIPQSATWK", "length": 629, "header": "tr|A0A9J7F946-1|A0A9J7HCA3_CRIGR Computationally mapped isoform of Transcriptional repressor p66-alpha isoform X8 OS=Cricetulus griseus OX=10029 GN=Gatad2a PE=4 SV=1 CANONICAL=A0A9J7HCA3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HCA3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCA3/entry#A0A9J7HCA3-1", "sequence": { "sequence": "MSEEACRTRSQKRALDPDLTEDDVDSKKMKMERGPSELTVDGDTRVMPEPCTGPAHGLLRTTETTATGSGEGLLGDGPVDMRTSHSDIKSEKRPPSPDVIVLSDSEQPSSPRMNGLTTAALKDTSTEALLKSSPEERERMIKQLKEELRLEEAKLVLLKKLRQSQIQKEAIVQKPAASSGSTVTTPPPLVRGNQNIPAGKTSLQTSSARMPGSIIPPPLVRGGQQVSAKLGPQASSQVVMPPLVRGAQWHFLSPVSQQIHNIRQHSSTGPPPLLLAPRASVPSMQIQGQRIIQQGLIRVANVPNTSLLVNIPQPTAASLKGTTVASAQASSTPTSVASVVASAESPASRQAAAKLALRKQLEKTLLEIPPPKPPAPEMNFLPSAANNEFIYLVGLEEVVQNLLETQAGRISASTAAAVLSREPYMCVQCKTDFTCRWREKGGVVMCENCMTSNQKKALKVEHTSRLKAAFVKALQQEQEMEQRLLQQGVGTTGTKAEPAAPHTTLKQVIKPRRKLAFRSGEARDWSNGAVLQASSQLSRGSATTPRGVLHTFSQSPKLQNAASATALVSRTARHSERAVSTSKGTTSNWKKTTLSTGGTLAFVSPSLAVHKTSSAVDRQREYLLDMIPPRSIPQSATWK", "length": 639, "header": "tr|A0A9J7HCA3-1|A0A9J7HCA3_CRIGR Isoform 1 of Transcriptional repressor p66-alpha isoform X8 OS=Cricetulus griseus OX=10029 GN=Gatad2a PE=4 SV=1 CANONICAL=A0A9J7HCA3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J8S2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCA3/entry#A0A9J7J8S2-1", "sequence": { "sequence": "MSEEACRTRSQKRALDPDLTEDDVDSKKMKMERGPSELTVDGDTRVMPEPCTGPAHGLLRTTETTATGSGEGLLGDGPVDMRTSHSDIKSEKRPPSPDVIVLSDSEQPSSPRMNGLTTAALKDTSTEALLKSSPEERERMIKQLKEELRLEEAKLVLLKKLRQSQIQKEAIVQKPAASSGSTVTTPPPLVRGNQNIPAGKTSLQTSSARMPGSIIPPPLVRGGQQVSAKLGPQASSQVVMPPLVRGAQQIHNIRQHSSTGPPPLLLAPRASVPSMQIQGQRIIQQGLIRVANVPNTSLLVNIPQPTAASLKGTTVASAQASSTPTSVASVVASAESPASRQAAAKLALRKQLEKTLLEIPPPKPPAPEMNFLPSAANNEFIYLVGLEEVVQNLLETQAGRISASTAAAVLSREPYMCVQCKTDFTCRWREKGGVVMCENCMTSNQKKALKVEHTSRLKAAFVKALQQEQEMEQRLLQQGVGTTGTKAEPAAPHTTLKQASSQLSRGSATTPRGVLHTFSQSPKLQNAASATALVSRTARHSERAVSTSKGTTSNWKKTTLSTGGTLAFVSPSLAVHKTSSAVDRQREYLLDMIPPRSIPQSATWK", "length": 605, "header": "tr|A0A9J7J8S2-1|A0A9J7J8S2_CRIGR Computationally mapped isoform of Transcriptional repressor p66-alpha isoform X6 OS=Cricetulus griseus OX=10029 GN=Gatad2a PE=4 SV=1 CANONICAL=A0A9J7HCA3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KEI6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCA3/entry#A0A9J7KEI6-1", "sequence": { "sequence": "MSEEACRTRSQKRALDPDLTEDDVDSKKMKMERGPSELTVDGDTRVMPEPCTGPAHGLLRTTETTATGSGEGLLGDGPVDMRTSHSDIKSEKRPPSPDVIVLSDSEQPSSPRMNGLTTAALKDTSTEALLKSSPEERERMIKQLKEELRLEEAKLVLLKKLRQSQIQKEAIVQKPAASSGSTVTTPPPLVRGNQNIPAGKTSLQTSSARMPGSIIPPPLVRGGQQVSAKLGPQASSQVVMPPLVRGAQQIHNIRQHSSTGPPPLLLAPRASVPSMQIQGQRIIQQGLIRVANVPNTSLLVNIPQPTAASLKGTTVASAQASSTPTSVASVVASAESPASRQAAAKLALRKQLEKTLLEIPPPKPPAPEMNFLPSAANNEFIYLVGLEEVVQNLLETQGRISASTAAAVLSREPYMCVQCKTDFTCRWREKGGVVMCENCMTSNQKKALKVEHTSRLKAAFVKALQQEQEMEQRLLQQGVGTTGTKAEPAAPHTTLKQASSQLSRGSATTPRGVLHTFSQSPKLQNAASATALVSRTARHSERAVSTSKGTTSNWKKTTLSTGGTLAFVSPSLAVHKTSSAVDRQREYLLDMIPPRSIPQSATWK", "length": 604, "header": "tr|A0A9J7KEI6-1|A0A9J7HCA3_CRIGR Computationally mapped isoform of Transcriptional repressor p66-alpha isoform X8 OS=Cricetulus griseus OX=10029 GN=Gatad2a PE=4 SV=1 CANONICAL=A0A9J7HCA3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MI16", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MI16" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MI16", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MI16" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100757004", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757004", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "negative regulation of transcription by RNA polymerase II", "id": "GO:0000122", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000122", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCA3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCA3" } ], "pmid": "" }, { "name": "chromatin remodeling", "id": "GO:0006338", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006338", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCA3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCA3" } ], "pmid": "" }, { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCA3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCA3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein-macromolecule adaptor activity", "id": "GO:0030674", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030674", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCA3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCA3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "NuRD complex", "id": "GO:0016581", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016581", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCA3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCA3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 304, "end_pos": 306, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7HCA3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCA3" }, { "id": "PF16563", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16563" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Transcriptional repressor p66 coiled-coil MBD2-interaction", "eco_id": "ECO_0000259", "start_pos": 132, "end_pos": 175, "start_aa": "Ser", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 304, "end_pos": 306 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7HCF5-1", "uniprot_ac": "A0A9J7HCF5", "uniprot_id": "A0A9J7HCF5_CRIGR", "mass": { "chemical_mass": 81732.0, "monoisotopic_mass": 81732.0 }, "refseq": { "ac": "XP_035307690", "name": "prestin isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307690" }, "gene_names": [ { "name": "Slc26a5", "type": "recommended", "evidence": [ { "id": "A0A9J7HCF5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCF5" } ] }, { "name": "Slc26a5", "type": "synonym", "evidence": [ { "id": "XP_035307690", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307690" } ] } ], "protein_names": [ { "name": "Prestin isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7HCF5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCF5/entry#names_and_taxonomy" } ] }, { "name": "prestin isoform X1", "type": "synonym", "evidence": [ { "id": "XP_035307690", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307690" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035307690", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307690" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCF5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCF5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Slc26a5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCF5", "locus": {} } ], "crossref": [ { "id": "A0A9J7HCF5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HCF5", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd07042", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07042", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100755962", "url": "https://www.ncbi.nlm.nih.gov/gene/100755962", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001902", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001902", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002645", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002645", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011547", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011547", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018045", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018045", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036513", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036513", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100755962", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755962", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YKDAQRV", "url": "https://omabrowser.org/oma/group/YKDAQRV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7HCF5", "url": "https://www.orthodb.org/?gene=A0A9J7HCF5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11814", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11814", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00916", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00916", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01740", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01740", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035307690", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307690", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MCF0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCF0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MCF0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MCF0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QJS5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJS5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QJS5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJS5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HCF5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCF5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HCF5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCF5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HCM2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCM2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HCM2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCM2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDHAEENEIPAATQKYYVERPIFSHPVLQERLHVKDKVSDSIGDKLKQAFTCTPKKIRNIIYMFLPITKWLPAYKFKEYVLGDLVSGISTGVLQLPQGLAFAMLAAVPPVFGLYSSFYPVIMYCFFGTSRHISIGPFAVISLMIGGVAVRLVPDDIVIPGGVNATNGTEARDALRVKVAMSVTLLSGIIQFCLGVCRFGFVAIYLTEPLVRGFTTAAAVHVFTSMLKYLFGVKTKRYSGIFSVVYSTVAVLQNVKNLNVCSLGVGLMVFGLLLGGKEFNERFKEKLPAPIPLEFFAVVMGTGISAGFNLQESYSVDVVGTLPLGLLPPANPDTSLFHLVYVDAIAIAIVGFSVTISMAKTLANKHGYQVDGNQELIALGICNSIGSLFQTFSISCSLSRSLVQEGTGGKTQLAGCLASLMILLVILATGFLFESLPQAVLSAIVIVNLKGMFMQFSDLPFFWRTSKIELTIWLTTFVSSLFLGLDYGLITAVIIALLTVIYRTQSPSYKVLGQLPDTDVYIDIDAYEEVKEIPGIKIFQINAPIYYANSDLYSNALKRKTGVNPALIMGARRKAMRKYAKEVGNANVANATVVKVVNELDAEIDGEDVKKPEEEDEEVKYPPIVIKTTFPEEMQRFMPQENVHTVILDFTQVNFIDSVGVKTLAGIVKEYGDVGIYVYLAGCSPQVVNDLTRNRFFENPALKELLFHSIHDAVLGSQVREAMAEQETSALSPQDDMEPNATPTPEA", "length": 746, "header": "tr|A0A9J7HCF5-1|A0A9J7HCF5_CRIGR Isoform 1 of Prestin isoform X1 OS=Cricetulus griseus OX=10029 GN=Slc26a5 PE=4 SV=1 CANONICAL=A0A9J7HCF5-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MCF0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCF5/entry#A0A8C2MCF0-1", "sequence": { "sequence": "MDHAEENEIPAATQKYYVERPIFSHPVLQERLHVKDKVSDSIGDKLKQAFTCTPKKIRNIIYMFLPITKWLPAYKFKEYVLGDLVSGISTGVLQLPQGLAFAMLAAVPPVFGLYSSFYPVIMYCFFGTSRHISIGPFAVISLMIGGVAVRLVPDDIVIPGGVNATNGTEARDALRVKVAMSVTLLSGIIQFCLGVCRFGFVAIYLTEPLVRGFTTAAAVHVFTSMLKYLFGVKTKRYSGIFSVVYSTVAVLQNVKNLNVCSLGVGLMVFGLLLGGKEFNERFKEKLPAPIPLEFFAVVMGTGISAGFNLQESYSVDVVGTLPLGLLPPANPDTSLFHLVYVDAIAIAIVGFSVTISMAKTLANKHGYQVDGNQELIALGICNSIGSLFQTFSISCSLSRSLVQEGTGGKTQLAGCLASLMILLVILATGFLFESLPQAVLSAIVIVNLKGMFMQFSDLPFFWRTSKIELTIWLTTFVSSLFLGLDYGLITAVIIALLTVIYRTQSPSYKVLGQLPDTDVYIDIDAYEEVKEIPGIKIFQINAPIYYANSDLYSNALKRKTGVNPALIMGARRKAMRKYAKEVGNANVANATVVKVDAEIDGEDVKKPEEEDEEVKYPPIVIKTTFPEEMQRFMPQENVHTVILDFTQVNFIDSVGVKTLAGIVKEYGDVGIYVYLAGCSPQVVNDLTRNRFFENPALKELLFHSIHDAVLGSQVREAMAEQETSALSPQDDMEPNATPTPEA", "length": 742, "header": "tr|A0A8C2MCF0-1|A0A9J7HCF5_CRIGR Computationally mapped isoform of Prestin isoform X1 OS=Cricetulus griseus OX=10029 GN=Slc26a5 PE=4 SV=1 CANONICAL=A0A9J7HCF5-1" }, "locus": {} }, { "isoform_ac": "A0A8C2QJS5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCF5/entry#A0A8C2QJS5-1", "sequence": { "sequence": "MDHAEENEIPAATQKYYVERPIFSHPVLQERLHVKDKVSDSIGDKLKQAFTCTPKKIRNIIYMFLPITKWLPAYKFKEYVLGDLVSGISTGVLQLPQGPFAVISLMIGGVAVRLVPDDIVIPGGVNATNGTEARDALRVKVAMSVTLLSGIIQFCLGVCRFGFVAIYLTEPLVRGFTTAAAVHVFTSMLKYLFGVKTKRYSGIFSVVYSTVAVLQNVKNLNVCSLGVGLMVFGLLLGGKEFNERFKEKLPAPIPLEFFAVVMGTGISAGFNLQESYSVDVVGTLPLGLLPPANPDTSLFHLVYVDAIAIAIVGFSVTISMAKTLANKHGYQVDGNQELIALGICNSIGSLFQTFSISCSLSRSLVQEGTGGKTQLAGCLASLMILLVILATGFLFESLPQAVLSAIVIVNLKGMFMQFSDLPFFWRTSKIELTIWLTTFVSSLFLGLDYGLITAVIIALLTVIYRTQSPSYKVLGQLPDTDVYIDIDAYEEVKEIPGIKIFQINAPIYYANSDLYSNALKRKTGVNPALIMGARRKAMRKYAKEVGNANVANATVVKVDAEIDGEDVKKPEEEDEEVKYPPIVIKTTFPEEMQRFMPQENVHTVILDFTQVNFIDSVGVKTLAGIVKEYGDVGIYVYLAGCSPQVVNDLTRNRFFENPALKELLFHSIHDAVLGSQVREAMAEQETSALSPQDDMEPNATPTPEA", "length": 705, "header": "tr|A0A8C2QJS5-1|A0A9J7HCF5_CRIGR Computationally mapped isoform of Prestin isoform X1 OS=Cricetulus griseus OX=10029 GN=Slc26a5 PE=4 SV=1 CANONICAL=A0A9J7HCF5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HCF5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCF5/entry#A0A9J7HCF5-1", "sequence": { "sequence": "MDHAEENEIPAATQKYYVERPIFSHPVLQERLHVKDKVSDSIGDKLKQAFTCTPKKIRNIIYMFLPITKWLPAYKFKEYVLGDLVSGISTGVLQLPQGLAFAMLAAVPPVFGLYSSFYPVIMYCFFGTSRHISIGPFAVISLMIGGVAVRLVPDDIVIPGGVNATNGTEARDALRVKVAMSVTLLSGIIQFCLGVCRFGFVAIYLTEPLVRGFTTAAAVHVFTSMLKYLFGVKTKRYSGIFSVVYSTVAVLQNVKNLNVCSLGVGLMVFGLLLGGKEFNERFKEKLPAPIPLEFFAVVMGTGISAGFNLQESYSVDVVGTLPLGLLPPANPDTSLFHLVYVDAIAIAIVGFSVTISMAKTLANKHGYQVDGNQELIALGICNSIGSLFQTFSISCSLSRSLVQEGTGGKTQLAGCLASLMILLVILATGFLFESLPQAVLSAIVIVNLKGMFMQFSDLPFFWRTSKIELTIWLTTFVSSLFLGLDYGLITAVIIALLTVIYRTQSPSYKVLGQLPDTDVYIDIDAYEEVKEIPGIKIFQINAPIYYANSDLYSNALKRKTGVNPALIMGARRKAMRKYAKEVGNANVANATVVKVVNELDAEIDGEDVKKPEEEDEEVKYPPIVIKTTFPEEMQRFMPQENVHTVILDFTQVNFIDSVGVKTLAGIVKEYGDVGIYVYLAGCSPQVVNDLTRNRFFENPALKELLFHSIHDAVLGSQVREAMAEQETSALSPQDDMEPNATPTPEA", "length": 746, "header": "tr|A0A9J7HCF5-1|A0A9J7HCF5_CRIGR Isoform 1 of Prestin isoform X1 OS=Cricetulus griseus OX=10029 GN=Slc26a5 PE=4 SV=1 CANONICAL=A0A9J7HCF5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HCM2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCF5/entry#A0A9J7HCM2-1", "sequence": { "sequence": "MDHAEENEIPAATQKYYVERPIFSHPVLQERLHVKDKVSDSIGDKLKQAFTCTPKKIRNIIYMFLPITKWLPAYKFKEYVLGDLVSGISTGVLQLPQGLAFAMLAAVPPVFGLYSSFYPVIMYCFFGTSRHISIGPFAVISLMIGGVAVRLVPDDIVIPGGVNATNGTEARDALRVKVAMSVTLLSGIIQFCLGVCRFGFVAIYLTEPLVRGFTTAAAVHVFTSMLKYLFGVKTKRYSGIFSVVYSTVAVLQNVKNLNVCSLGVGLMVFGLLLGGKEFNERFKEKLPAPIPLEFFAVVMGTGISAGFNLQESYSVDVVGTLPLGLLPPANPDTSLFHLVYVDAIAIAIVGFSVTISMAKTLANKHGYQVDGNQELIALGICNSIGSLFQTFSISCSLSRSLVQEGTGGKTQLAGCLASLMILLVILATGFLFESLPQTIWLTTFVSSLFLGLDYGLITAVIIALLTVIYRTQSPSYKVLGQLPDTDVYIDIDAYEEVKEIPGIKIFQINAPIYYANSDLYSNALKRKTGVNPALIMGARRKAMRKYAKEVGNANVANATVVKVDAEIDGEDVKKPEEEDEEVKYPPIVIKTTFPEEMQRFMPQENVHTVILDFTQVNFIDSVGVKTLAGIVKEYGDVGIYVYLAGCSPQVVNDLTRNRFFENPALKELLFHSIHDAVLGSQVREAMAEQETSALSPQDDMEPNATPTPEA", "length": 710, "header": "tr|A0A9J7HCM2-1|A0A9J7HCM2_CRIGR Computationally mapped isoform of Prestin isoform X4 OS=Cricetulus griseus OX=10029 GN=Slc26a5 PE=4 SV=1 CANONICAL=A0A9J7HCF5-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 743, "start_aa": "Thr", "end_pos": 743, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr743", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QJS5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJS5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QJS5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QJS5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100755962", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755962", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A5G2QPW2-1", "protein_name": "Solute carrier family 26 member 5", "gene_name": "SLC26A5", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDHAEENELLAATQRYYVERPIFSHPVLQERLHKKDKISDSIGDKLKQAFTCTPKKIRNIIYMFLPITKWLPAYKFKEYVLGDLVSGISTGVLQLPQGLAFAMLAAVPPVFGLYSSFYPVIMYCFFGTSRHISIGPFAVISLMIGGVAVRLVPDDIVIPGGVNATNGTEARDALRVKVAMSVTLLSGIIQFCLGVCRFGFVAIYLTEPLVRGFTTAAAVHVFTSMLKYLFGVKTKRYSGIFSVVYSTVAVLQNVKNLNVCSLGVGLMVFGLLLGGKEFNERFKEKLPAPIPLEFFAVVMGTGISAGFNLKSYNVDVVGTLPLGLLPPANPDTSLFHLVYVDAIAIAIVGFSVTISMAKTLANKHGYQVDGNQELIALGLCNSIGSLFQTFSISCSLSRSLVQEGTGGKTQLAGCLASLMILLVILATGFLFESLPQAVLSAIVIVNLKGMFMQFSDLPFFWRTSKIELTIWLTTFVSSLFLGLDYGLITAVIIALLTVIYRTQSPSYKVLGQLPETDVYIDIDAYEEVKEIPGIKIFQINAPIYYANSDLYSNALKRKTGVNPALIMGARRKAMKKYAKEMGNANMANAAVVKVTDAEVDGEDGTKPEEGEDEIKYPPIVIKSKFPEELQRFMPPGDNIHTIILDFTQVNFIDSVGVKTLAVMVKEYGDVGIYVYLAGCSAQVVDDLTRNRFFENPALRELLFHSIHDAVLGSQVREAMAERDASAPPLQEDSEPNATPEA", "length": 741 }, "evidence": [ { "id": "A0A9J7HCF5", "url": "https://omabrowser.org/oma/group/A0A9J7HCF5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8V0Y720-1", "protein_name": "Solute carrier family 26 member 5", "gene_name": "SLC26A5", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MLSVKTESEFASSAYLYWQIIILVVNRHLEGHRTSHKMLLSLTPQLRSGQCFAVETVEHFFLGSCSVRSAMEDAQESGECLVQNQKYCVERPIYNQEILQGQLHKRERTPQSLRQKIEHSCRCSSKKAKSHLYSFLPILKWLPRYPVKEYLLGDIISGISTGVMQLPQGLAYALLAAVPPVFGLYSSFYPVFLYTFFGTSKHISIGTFAVISMMVGGVAVRQVPDEVISVGYNSTNATDASDYYSLRDDKRVQVAVTLAFLSGIIQLCLGFLRFGFVAIYLTEPLVRGFTTAAAVHVFTSQLKYLLGVKTSRYSGPLSVVYSLVAVFSKITTTNIAALIVGLTCIALLLIGKEINLRFKKKLPVPIPMEIIVVIIGTGVSAGMNLTESYGVDVVGKIPQGLSAPAVPEIQLIPAIFIDAVAIAIVGFSMAVSMAKIFALKHGYTIDGNQELIALGICNSVGSFFQSFPITCSMSRSLVQESTGGKTQIAGALSSIMVLLVIVAIGYLFEPLPQTVLAAIVMVNLKGMFKQFADVAHFWRTSKIELAIWVVAFVASLFLGLDYGLLTAVAFAMITVIYRTQRPQYRILGQIPDTDIYCDVEEYEEVKEYPGIKIFQANTSLYFANSESYTSALKKKTGVDPCAILAARRKAQKKHAREIKKANKVKKKAVLKLVNSSTNDVEASVKHEIANDGLPANGKFAFVDAGVQDGSPDELEHFVEPKTNVHSLILDFAPVNFVDSVGAKTLKSVIKEYNEVGVCVCIASCSGPVMNELTRLNFFDNTVTRELLFHSIHDAVLACQGKDRSASQTALDH", "length": 812 }, "evidence": [ { "id": "A0A9J7HCF5", "url": "https://omabrowser.org/oma/group/A0A9J7HCF5/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "E1BHY0-1", "protein_name": "Solute carrier family 26 member 5", "gene_name": "SLC26A5", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MDHAEENEILGATKRYYVERPIFSHPVLQERLHKKDKVSDSIGDKLKQAFTCTPKKIRNIIYMFLPITKWLPAYKFKEYVLGDLVSGISTGVLQLPQGLAFAMLAAVPPVFGLYSSFYPVIMYCFFGTSRHVSIGPFAVISLMIGGVAVRLVPDDIVIPGGVNATNGTEARDALRVKVAMSVTLLSGIIQFCLGVCRFGFVAIYLTEPLVRGFTTAAAVHVFTSMLKYLFGVKTKRYSGIFSVVYSTVAVLQNVKNLNVCSLGVGLMVFGLLLGGKEFNERFKEKLPAPIPLEFFAVVMGTGISAGFNLHESYNVDVVGTLPLGLLPPANPDTSLFHLVYVDAIAIAIVGFSVTISMAKTLANKHGYQVDGNQELIALGLCNSIGSLFQTFSISCSLSRSLVQEGTGGKTQLAGCLASLMILLVILATGFLFESLPQAVLSAIVIVNLKGMFMQFSDLPFFWRTSKIELTIWLTTFVSSLFLGLDYGLITAVIIALLTVIYRTQSPSYKVLGQLPDTDVYIDIDAYEEVKEIPGIKIFQINAPIYYANSDLYSNALKRKTGVNPAFIMGARRKAMRKYAKEVGNANMANATVVKVDAEVDGEDGTKPEEDENEIKYPPIVIKSTLPEELQRFMPPGDNIHTIILDFTQVNFIDSVGVKTLAGIVKEYGDVGIYVYLAGCSAQVVNDLTRNRFFENPALLELLFHSIHDAVLGSQAREALAEQEGSAVPPQEDSEPNATPEA", "length": 741 }, "evidence": [ { "id": "A0A9J7HCF5", "url": "https://omabrowser.org/oma/group/A0A9J7HCF5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "P58743-1", "protein_name": "Prestin", "gene_name": "SLC26A5", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDHAEENEILAATQRYYVERPIFSHPVLQERLHTKDKVPDSIADKLKQAFTCTPKKIRNIIYMFLPITKWLPAYKFKEYVLGDLVSGISTGVLQLPQGLAFAMLAAVPPIFGLYSSFYPVIMYCFLGTSRHISIGPFAVISLMIGGVAVRLVPDDIVIPGGVNATNGTEARDALRVKVAMSVTLLSGIIQFCLGVCRFGFVAIYLTEPLVRGFTTAAAVHVFTSMLKYLFGVKTKRYSGIFSVVYSTVAVLQNVKNLNVCSLGVGLMVFGLLLGGKEFNERFKEKLPAPIPLEFFAVVMGTGISAGFNLKESYNVDVVGTLPLGLLPPANPDTSLFHLVYVDAIAIAIVGFSVTISMAKTLANKHGYQVDGNQELIALGLCNSIGSLFQTFSISCSLSRSLVQEGTGGKTQLAGCLASLMILLVILATGFLFESLPQAVLSAIVIVNLKGMFMQFSDLPFFWRTSKIELTIWLTTFVSSLFLGLDYGLITAVIIALLTVIYRTQSPSYKVLGKLPETDVYIDIDAYEEVKEIPGIKIFQINAPIYYANSDLYSNALKRKTGVNPAVIMGARRKAMRKYAKEVGNANMANATVVKADAEVDGEDATKPEEEDGEVKYPPIVIKSTFPEEMQRFMPPGDNVHTVILDFTQVNFIDSVGVKTLAGIVKEYGDVGIYVYLAGCSAQVVNDLTRNRFFENPALWELLFHSIHDAVLGSQLREALAEQEASAPPSQEDLEPNATPATPEA", "length": 744 }, "evidence": [ { "id": "A0A9J7HCF5", "url": "https://omabrowser.org/oma/group/A0A9J7HCF5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q55FK8-1", "protein_name": "STAS domain-containing protein", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MGDHLKNTREWIRHSSNKDDGNNAEKTHFFGHHEEEDHEHMLFTKEELTNPKELAKAMKVKIPLYVPIFNWIKSYSKEDLIGDILSSITVATMLVPQGLAYAVLAGLPAIYGLYSGWLPLVIYSFMGGCKQLAVGPEALLSVLLGSILGGYTTPPEDMTLNDYLVSIALTLALLVGIVSFLFGICQFGFLGGILSRWVLSGFINAVALIIAISQLDSLLGVRTGGGGHTSDTTHGSTSTSISGSTISSMSEVLTETSTHHPGPYEKFWTAITNLQDSDKTTVILSAGCVVFLVGMRFFKQFLVKKMGWKNAKYIPEILLTVILTCVITAVFGLDRECVNTSDHDENKCVEQGSGVSVLRYVKGGFPTVGFPSFQANTIQELLPQAFLIVIVGFVEATAVSKGLATKHNYQINSNRELVAFGVANILGSIFGSYPVFSSIPRTSIQDMAGSRTCLSGFITSCLLLITCLFLTRLFYYLPYCAMASIIFVAAFGLIEVHEAMFLWKTRSWGDLIQFSIALLATFIFEVEVGILISVGMCIFLVLKHSSSPHVYSVLGRVPGTNRFKDVAKFPEAEPIEGILLVRIDEVLYFANIGQFKQLLSEIERMMDRSTNVTGSGSTPLQSIIINVVNIPVMDASALLTIEEMVTAYHKRNVKVAFVQMSEKIKESFKQSGLYDIVTPQFIFDSNYEAVSFLEQSINYSNNNDSRQVNLNMPQSDQSYDDLNNNEVGGFDQPSSSSSSRFNNQNFLNKNNDNNNNNNNNNNDNNINDDDYQNSYNNNNNNGGGAILSDGLKLEDYSEPESDEFIQSSNQKSKK", "length": 814 }, "evidence": [ { "id": "A0A9J7HCF5", "url": "https://omabrowser.org/oma/group/A0A9J7HCF5/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q7T2C4-1", "protein_name": "Prestin", "gene_name": "slc26a5", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MEHVTVSEEPSATLMYHVERPIFSEAYIDSELLHKRKKTPKPYKLRVAEHLCCSSEKVKSVVFGFLPILTWLPSYPLKEYLFGDIVSGISTGVMQLPQGLAYAMLAAVPPVFGLYSSFYPVLLYTFFGTSKHISIGTFAVISLMIGGVAVREAPDSMFMVNGTNSSLVVNIEARDSRRVEVVVALTTLVGIIQFVLGLLRFGFLAIYLTEPLVRGFTTAAAVHVSVSQLKYLLGVKTARFNGPLSVVYSLDAVLRNIADTNIVTLIIGLGCTVFLYIIKQLNERFKKKLLIPIPGEIIVVIVSTGISYGMLMSENYGVDVVGKIPTGLLPPKVPDFSVFPNLFADAVPIAVVGFSITISLAKTFALKYGYSVDGNQELIALGLCNFVSSFFHTFVVTASMSRSLVQESTGGHTEIAGLLASLLVLLVVVAIGFVFQPLPTTVLAAIIMVNLLGMFKQTRDIPVLWRKSKIELAIWLVSFFASVLLGLDYGLAVAMAFAILTVIYRTQRPKNVVLGQIPDTGLYFDVDEYEEAEECSGIKIFQSNSSIYFANSELYVKALKAKTGIDPEKLLDAKKLQLKYAKRDTEGTKTVNQGSLLKKNAVVLLDMELGVTHEVLNGPQKPKHVHTNGQMTEKHIESESEDEFFLQRLTPIHSVILDFTPVNFIDSVGAKTIKSVIKEYATVDVKVVLAGCSRTLLSELRTLQFFSEPVTPDLIFPTIHDAVLQCKRWRDLPVHPNIH", "length": 739 }, "evidence": [ { "id": "A0A9J7HCF5", "url": "https://omabrowser.org/oma/group/A0A9J7HCF5/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q99NH7-1", "protein_name": "Prestin", "gene_name": "Slc26a5", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MDHAEENEIPAETQRYYVERPIFSHPVLQERLHVKDKVTESIGDKLKQAFTCTPKKIRNIIYMFLPITKWLPAYKFKEYVLGDLVSGISTGVLQLPQGLAFAMLAAVPPVFGLYSSFYPVIMYCFFGTSRHISIGPFAVISLMIGGVAVRLVPDDIVIPGGVNATNGTEARDALRVKVAMSVTLLSGIIQFCLGVCRFGFVAIYLTEPLVRGFTTAAAVHVFTSMLKYLFGVKTKRYSGIFSVVYSTVAVLQNVKNLNVCSLGVGLMVFGLLLGGKEFNERFKEKLPAPIPLEFFAVVMGTGISAGFNLHESYSVDVVGTLPLGLLPPANPDTSLFHLVYVDAIAIAIVGFSVTISMAKTLANKHGYQVDGNQELIALGICNSIGSLFQTFSISCSLSRSLVQEGTGGKTQLAGCLASLMILLVILATGFLFESLPQAVLSAIVIVNLKGMFMQFSDLPFFWRTSKIELTIWLTTFVSSLFLGLDYGLITAVIIALLTVIYRTQSPSYKVLGQLPDTDVYIDIDAYEEVKEIPGIKIFQINAPIYYANSDLYSSALKRKTGVNPALIMGARRKAMRKYAKEVGNANVANATVVKVDAEVDGENATKPEEEDDEVKFPPIVIKTTFPEELQRFLPQGENVHTVILDFTQVNFVDSVGVKTLAGIVKEYGDVGIYVYLAGCSPQVVNDLTRNNFFENPALKELLFHSIHDAVLGSQVREAMAEQEATASLPQEDMEPNATPTTPEA", "length": 744 }, "evidence": [ { "id": "A0A9J7HCF5", "url": "https://omabrowser.org/oma/group/A0A9J7HCF5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9EPH0-1", "protein_name": "Prestin", "gene_name": "Slc26a5", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDHAEENEIPAETQKYLVERPIFSHPVLQERLHVKDKVTDSIGDKLKQAFTCTPKKVRNIIYMFLPITKWLPAYKFKEYVLGDLVSGISTGVLQLPQGLAFAMLAAVPPVFGLYSSFYPVIMYCFFGTSRHISIGPFAVISLMIGGVAVRLVPDDIVIPGGVNATNGTEARDALRVKVAMSVTLLSGIIQFCLGVCRFGFVAIYLTEPLVRGFTTAAAVHVFTSMLKYLFGVKTKRYSGIFSVVYSTVAVLQNVKNLNVCSLGVGLMVFGLLLGGKEFNERFKEKLPAPIPLEFFAVVMGTGISAGFNLHESYSVDVVGTLPLGLLPPANPDTSLFHLVYVDAIAIAIVGFSVTISMAKTLANKHGYQVDGNQELIALGICNSIGSLFQTFSISCSLSRSLVQEGTGGKTQLAGCLASLMILLVILATGFLFESLPQAVLSAIVIVNLKGMFMQFSDLPFFWRTSKIELTIWLTTFVSSLFLGLDYGLITAVIIALLTVIYRTQSPSYTVLGQLPDTDVYIDIDAYEEVKEIPGIKIFQINAPIYYANSDLYSSALKRKTGVNPAIIMGARRKAMRKYAKEVGNANIANATVVKVDAEVDGENATKPEEEDDEVKFPPIVIKTTFPEELQRFLPQGENIHTVILDFTQVNFMDSVGVKTLAGIVKEYGDVGIYVYLAGCSAQVVNDLTSNRFFENPALKELLFHSIHDAVLGSQVREAMAEQETTVLPPQEDMEPNATPTTPEA", "length": 744 }, "evidence": [ { "id": "A0A9J7HCF5", "url": "https://omabrowser.org/oma/group/A0A9J7HCF5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9SXS2-1", "protein_name": "Probable sulfate transporter 3.3", "gene_name": "SULTR3;3", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MEVHKVVAPPHKSTVAKLKTKLKETFFPDDPLRQFRGQPNRTKLIRAAQYIFPILQWCPEYSFSLLKSDVVSGLTIASLAIPQGISYAKLANLPPIVGLYSSFVPPLVYAVLGSSRDLAVGPVSIASLILGSMLRQQVSPVDDPVLFLQLAFSSTFFAGLFQASLGILRLGFIIDFLSKATLIGFMGGAAIIVSLQQLKGLLGITHFTKHMSVVPVLSSVFQHTNEWSWQTIVMGVCFLLFLLSTRHLSMKKPKLFWVSAGAPLLSVIVSTLLVFVFRAERHGISVIGKLPEGLNPPSWNMLQFHGSHLALVAKTGLVTGIVSLTEGIAVGRTFAALKNYHVDGNKEMIAIGLMNVVGSATSCYVTTGAFSRSAVNNNAGAKTAVSNIVMSVTVMVTLLFLMPLFEYTPNVVLGAIIVTAVIGLIDLPAACHIWKIDKFDFLVMLCAFFGVIFLSVQNGLAIAVGLSLFKILMQVTRPKMVIMGNIPGTDIYRDLHHYKEAQRIPGFLVLSIESPVNFANSNYLTERTSRWIEECEEEEAQEKHSSLQFLILEMSAVSGVDTNGVSFFKELKKTTAKKDIELVFVNPLSEVVEKLQRADEQKEFMRPEFLFLTVAEAVASLSLKGPSLSNV", "length": 631 }, "evidence": [ { "id": "A0A9J7HCF5", "url": "https://omabrowser.org/oma/group/A0A9J7HCF5/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCF5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCF5" } ], "pmid": "" }, { "name": "basolateral plasma membrane", "id": "GO:0016323", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016323", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCF5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCF5" } ], "pmid": "" }, { "name": "lateral plasma membrane", "id": "GO:0016328", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016328", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCF5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCF5" } ], "pmid": "" }, { "name": "lateral wall of outer hair cell", "id": "GO:0120249", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0120249", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCF5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCF5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "transmembrane transport", "id": "GO:0055085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0055085", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCF5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCF5" } ], "pmid": "" }, { "name": "sensory perception of sound", "id": "GO:0007605", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007605", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCF5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCF5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "protein homodimerization activity", "id": "GO:0042803", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042803", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCF5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCF5" } ], "pmid": "" }, { "name": "spectrin binding", "id": "GO:0030507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030507", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCF5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCF5" } ], "pmid": "" }, { "name": "secondary active sulfate transmembrane transporter activity", "id": "GO:0008271", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008271", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCF5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCF5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 163, "end_pos": 165, "annotation": "n_glycosylation_sequon" }, { "start_pos": 166, "end_pos": 168, "annotation": "n_glycosylation_sequon" }, { "start_pos": 589, "end_pos": 591, "annotation": "n_glycosylation_sequon" }, { "start_pos": 739, "end_pos": 741, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7HCF5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCF5" }, { "id": "PS50801", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50801" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "STAS", "eco_id": "ECO_0000259", "start_pos": 525, "end_pos": 716, "start_aa": "Ala", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 743 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 163, "end_pos": 165 }, { "start_pos": 166, "end_pos": 168 }, { "start_pos": 589, "end_pos": 591 }, { 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This record is derived from a genomic sequence (NW_003616111.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035293375", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035293375" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HBR2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBR2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Rasgef1b", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBR2", "locus": {} } ], "crossref": [ { "id": "A0A9J7HBR2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HBR2", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00155", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00155", "database": "CDD", "categories": [ "Protein Classification" ] 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"publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7HCJ4-1", "uniprot_ac": "A0A9J7HCJ4", "uniprot_id": "A0A9J7HCJ4_CRIGR", "mass": { "chemical_mass": 145779.0, "monoisotopic_mass": 145779.0 }, "refseq": { "ac": "XP_035308137", "name": "protein SFI1 homolog isoform X10", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308137" }, "gene_names": [ { "name": "LOC100771980", "type": "recommended", "evidence": [ { "id": "A0A9J7HCJ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCJ4" } ] }, { "name": "LOC100771980", "type": "synonym", "evidence": [ { "id": "XP_035308137", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308137" } ] } ], "protein_names": [ { "name": "Protein SFI1 homolog isoform X10", "type": "synonym", "evidence": [ { "id": "A0A9J7HCJ4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCJ4/entry#names_and_taxonomy" } ] }, { "name": "protein SFI1 homolog isoform X10", "type": "synonym", "evidence": [ { "id": "XP_035308137", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308137" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035308137", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308137" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCJ4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCJ4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100771980", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCJ4", "locus": {} } ], "crossref": [ { "id": "A0A9J7HCJ4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HCJ4", "database": "AlphaFoldDB", "categories": [] }, { "id": "100771980", "url": "https://www.ncbi.nlm.nih.gov/gene/100771980", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR052270", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052270", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100771980", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771980", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HCJ4", "url": "https://www.orthodb.org/?gene=A0A9J7HCJ4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22028", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22028", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22028:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22028:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_035308137", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308137", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7EU66", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EU66", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EU66-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EU66-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EZW0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZW0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EZW0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZW0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HAB2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAB2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HAB2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAB2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HAZ7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAZ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HAZ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAZ7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HCJ4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCJ4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HCJ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCJ4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HEG0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HEG0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HEG0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HEG0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J3Z3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J3Z3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J3Z3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J3Z3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KBQ0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBQ0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KBQ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KBQ0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEKKTVSRSFRDGVVKKPCSPKALPLNKSAFSGVQRELPRSCHSSSQASHNWARRRLRELRSRCVARKFLYLWIRMTFGRVTPSRARFFHEQRILQKVFGEWREEWWVSQREWKLCMRADCHYRYYLYNLMFQSWKTFVHQQQEMKRRLHRAKHHDTKQKMRQAWKSWLIYVVACRTKRQMQNTALEFRRRSVLCFWWSKWMWRLGQAHADHALHAAAVKHRALSLQLQAWSQWQEQLLHSRQERWKMVIAVQHHQRWQKQRSLKAWLQYLHICRVKRWQNEMAAQFHRVTVLQIHFCDWQWAWEWRQSLSAHQALVEKLAKKMALRRAFAHWKHFMLLQAEEAAQHAAAEEHHRHYLLYFCLRALKDNVTQAHLWRIRTNLAHQLRDTTLLRRFWNLWQSRIEQREERVQLPSLGTAWSHYRMTVLRKCVRVWLRFVHKRRHQQLLQARADGHFQQRALPTAFHMWYRLWQWHQQSRVLHTRAVRFHRETLERQVFAIWRQKMSQHRENRLAERMAILQAEQQLLRRSWFMWHQQAAACHQEQERQAVACAHHHNRLLGKAFCVWKGSAQGLRTERMGRAQAAHFYSAQLLRWAWSMWSERLALRMEEQQKLRRAALHSQHTLLHRTLQKWLTYQDRVRSVLQEVAARERQYNRQLLRWVLRRWRENTVARLDMAKKTSQARAQYNRTLCSKVLVQWREVTSMQIYYREKKAVALREARKALGRGRLRNWFQRWQFYSQREAQQRSQVEQAAQHHRQQLLMEAMARWKAYHLGCVRKKCLQKQSAQLLAQRLGRACFCQWRKQSVDPEHTEYLKLAARKQEQWSTARALWFWAFSLQARVWTAWLGFIFERRRKKARLEQAVQDYHQQLLQEGVTRLLRFAAGMKASRQQLQTQQQVQAAHSLHCAVRHCAELWKKKVLGPGRMSQPPAPITFSRRVTFKDSILSGVAAEAGDATLETKKFRAPPSQGILGSLAVAAGEPCCLELNDARLSRKQPRRPSFLLERLQNQKSPGWCILGEQELEKPPEKGQSMALPRGLSLTRPFLPMVLQNAPGSSAGLELLPPSSFLPHGVGDSARGSAKHTIPGPQPLACPSLTKGPKPSLFLPGDFTSTRIGPDYGYEATVAAGHTKLEAELEGIQQQLQHYQTTKQNLRSCQRQANSLRRWLELSQEEPRPEDWDLEQRVKKELEEVELQIQQLSEELQAQRQPIGTCIARVQALKQALF", "length": 1224, "header": "tr|A0A9J7HCJ4-1|A0A9J7HCJ4_CRIGR Isoform 1 of Protein SFI1 homolog isoform X10 OS=Cricetulus griseus OX=10029 GN=LOC100771980 PE=4 SV=1 CANONICAL=A0A9J7HCJ4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7EU66-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCJ4/entry#A0A9J7EU66-1", "sequence": { "sequence": "MEKKTVSRSFRDGVVKKPCSPKALPLNKSAFSGVQRELPRSCHSSSQASHNWARRRLRELRSRCVARKFLYLWIRMTFGRVTPSRARFFHEQRILQKVFGEWREEWWVSQREWKLCMRADCHYRYYLYNLMFQSWKTFVHQQQEMKRRLHRAKHHDTKQKMRQAWKSWLIYVVACRTKRQMQNTALEFRRRSVLCFWWSKWMWRLGQAHADHALHAAAVKHRALSLQLQAWSQWQEQLLHSRQERWKMVIAVQHHQRWQKQRSLKAWLQYLHICRVKRWQNEMAAQFHRVTVLQIHFCDWQWAWEWRQSLSAHQALVEKLAKKMALRRAFAHWKHFMLLQAEEAAQHAAAEEHHRHYLLYFCLRALKDNVTQAHLWRIRTNLAHQLRDTTLLRRFWNLWQSRIEQREERVQLPSLGTAWSHYRMTVLRKCVRVWLRFVHKRRHQQLLQARADGHFQQRALPTAFHMWYRLWQWHQQSRVLHTRAVRFHRETLERQVFAIWRQKMSQHRENRLAERMAILQAEQQLLRRSWFMWHQQAAACHQEQERQAVACAHHHNRLLGKAFCVWKGSAQGLRTERMGRAQAAHFYSAQLLRWAWSMWSERLALRMEEQQKLRRAALHSQHTLLHRTLQKWLTYQDRVRSVLQEVAARERQYNRQLLRWVLRRWRENTVARLDMAKKTSQARAQYNRTLCSKVLVQWREVTSMQIYYREKKAVALREARKALGRGRLRNWFQRWQFYSQREAQQRSQVEQAAQHHRQQLLMEAMARWKAYHLGCVRKKCLQKQSAQLLAQRLGRACFCQWRKQLAARKQEQWSTARALWFWAFSLQARVWTAWLGFIFERRRKKARLEQAVQDYHQQLLQEGVTRLLRFAAGMKASRQQLQTQQQVQAAHSLHCAVRHCAELWKKKVLGPGRMSQPPAPITFSRRVTFKDSILSGVAAEAGDATLETKKFRAPPSQGILGSLAVAAGEPCCLELNDARLSRKQPRRPSFLLERLQNQKSPGWCILGEQELEKPPEKGQSMALPRGLSLTRPFLPMVLQNAPGSSAGLELLPPSSFLPHGVGDSARGSAKHTIPGPQPLACPSLTKGPKPSLFLPGDFTSTRIGPDYGYEATGHTKLEAELEGIQQQLQHYQTTKQNLRSCQRQANSLRRWLELSQEEPRPEDWDLEQRVKKELEEVELQIQQLSEELQAQRQPIGTCIARVQALKQALF", "length": 1210, "header": "tr|A0A9J7EU66-1|A0A9J7HCJ4_CRIGR Computationally mapped isoform of Protein SFI1 homolog isoform X10 OS=Cricetulus griseus OX=10029 GN=LOC100771980 PE=4 SV=1 CANONICAL=A0A9J7HCJ4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7EZW0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCJ4/entry#A0A9J7EZW0-1", "sequence": { "sequence": "MEKKTVSRSFRDGVVKKPCSPKALPLNKSAFSGVQRELPRSCHSSSQASHNWARRRLRELRSRCVARKFLYLWIRMTFGRVTPSRARFFHEQRILQKVFGEWREEWWVSQREWKLCMRADCHYRYYLYNLMFQSWKTFVHQQQEMKRRLHRAKHHDTKQKMRQAWKSWLIYVVACRTKRQMQNTALEFRRRSVLCFWWSKWMWRLGQAHADHALHAAAVKHRALSLQLQAWSQWQEQLLHSRQERWKMVIAVQHHQRWQKQRSLKAWLQYLHICRVKRWQNEMAAQFHRVTVLQIHFCDWQWAWEWRQSLSAHQALVEKLAKKMALRRAFAHWKHFMLLQAEEAAQHAAAEEHHRHYLLYFCLRALKDNVTQAHLWRIRTNLAHQLRDTTLLRRFWNLWQSRIEQREERVQLPSLGTAWSHYRMTVLRKCVRVWLRFVHKRRHQQLLQARADGHFQQRALPTAFHMWYRLWQWHQQSRVLHTRAVRFHRETLERQVFAIWRQKMSQHRENRLAERMAILQAEQQLLRRSWFMWHQQAAACHQEQERQAVACAHHHNRLLGKAFCVWKGSAQGLRTERMGRAQAAHFYSAQLLRWAWSMWSERLALRMEEQQKLRRAALHSQHTLLHRTLQKWLTYQDRVRSVLQEVAARERQYNRQLLRWVLRRWRENTVARLDMAKKTSQARAQYNRTLCSKVLVQWREVTSMQIYYREKKAVALREARKALGRGRLRNWFQRWQFYSQREAQQRSQVEQAAQHHRQQLLMEAMARWKAYHLGCVRKKCLQKQSAQLLAQRLGRACFCQWRKQLAARKQEQWSTARALWFWAFSLQARVWTAWLGFIFERRRKKARLEQAVQDYHQQLLQEGVTRLLRFAAGMKASRQQLQTQQQVQAAHSLHCAVRHCAELWKKKVLGPGRMSQPPAPITFSRRVTFKDSILSGVAAEAGDATLETKKFRAPPSQGILGSLAVAAGEPCCLELNDARLSRKQPRRPSFLLERLQNQKSPGWCILGEQELEKPPEKGQSMALPRGLSLTRPFLPMVLQNAPGSSAGLELLPPSSFLPHGVGDSARGSAKHTIPGPQPLACPSLTKGPKPSLFLPGDFTSTRIGPDYGYEATVAAGHTKLEAELEGIQQQLQHYQTTKQNLRSCQRQANSLRRWLELSQEEPRPEDWDLEQRVKKELEEVELQIQQLSEELQAQRQPIGTCIARVQALKQALF", "length": 1213, "header": "tr|A0A9J7EZW0-1|A0A9J7HCJ4_CRIGR Computationally mapped isoform of Protein SFI1 homolog isoform X10 OS=Cricetulus griseus OX=10029 GN=LOC100771980 PE=4 SV=1 CANONICAL=A0A9J7HCJ4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HAB2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCJ4/entry#A0A9J7HAB2-1", "sequence": { "sequence": "MEKKTVSRSFRDGVVKKPCSPKALPLNKSAFSGVQRELPRSCHSSSQASHNWARRRLRELRSRCVARKFLYLWIRMTFGRVTPSRARFFHEQRILQKVFGEWREEWWVSQREWKLCMRADCHYRYYLYNLMFQSWKTFVHQQQEMKRRLHRAKHHDTKQKMRQAWKSWLIYVVACRTKRQMQNTALEFRRRSVLCFWWSKWMWRLGQAHADHALHAAAVKHRALSLQLQAWSQWQEQLLHSRQERWKMVIAVQHHQRWQKQRSLKAWLQYLHICRVKRWQNEMAAQFHRVTVLQIHFCDWQWAWEWRQSLSAHQALVEKLAKKMALRRAFAHWKHFMLLQAEEAAQHAAAEEHHRHYLLYFCLRALKDNVTQAHLWRIRTNLAHQLRDTTLLRRFWNLWQSRIEQREERVQLPSLGTAWSHYRMTVLRKCVRVWLRFVHKRRHQQLLQARADGHFQQRALPTAFHMWYRLWQWHQQSRVLHTRAVRFHRETLERQVFAIWRQKMSQHRENRLAERMAILQAEQQLLRRSWFMWHQQAAACHQEQERQAVACAHHHNRLLGKAFCVWKGSAQGLRTERMGRAQAAHFYSAQLLRWAWSMWSERLALRMEEQQKLRRAALHSQHTLLHRTLQKWLTYQDRVRSVLQEVAARERQYNRQLLRWVLRRWRENTVARLDMAKKTSQARAQYNRTLCSKVLVQWREVTSMQIYYREKKAVALREARKALGRGRLRNWFQRWQFYSQREAQQRSQVEQAAQHHRQQLLMEAMARWKAYHLGCVRKKCLQKQSAQLLAQRLGRACFCQWRKQSVDPEHTEYLKLAARKQEQWSTARALWFWAFSLQARVWTAWLGFIFERRRKKARLEQAVQDYHQQLLQEGVTRLLRFAAGMKASRQQLQTQQQVQAAHSLHCAVRHCAELWKKKVLGPGRMSQPPAPITFSRRVTFKDSILSGVAAEAGDATLETKKFRAPPSQGILGSLAVAAGEPCCLELNDARLSRKQPRRPSFLLERLQNQKSPGWCILGEQELEKPPEKGQSMALPRGLSLTRPFLPMVLQNAPGSSAGLELLPPSSFLPHGVGDSARGSAKHTIPGPQPLACPSLTKGPKPSLFLPGDFTSTRIGPDYGYEATGHTKLEAELEGIQQQLQHYQTTKQNLRSCQRQANSLRRWLELSQEEPRPEDWDLEQRVKKELEEVELQIQQLSEELQAQRQPIGTCIARVQALKQALF", "length": 1221, "header": "tr|A0A9J7HAB2-1|A0A9J7HAB2_CRIGR Computationally mapped isoform of Protein SFI1 homolog isoform X11 OS=Cricetulus griseus OX=10029 GN=LOC100771980 PE=4 SV=1 CANONICAL=A0A9J7HCJ4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HAZ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCJ4/entry#A0A9J7HAZ7-1", "sequence": { "sequence": "MEKKTVSRSFRDGVVKKPCSPKALPLNKSAFSGVQRELPRSCHSSSQASHNWARRRLRELRSRCVARKFLYLWIRMTFGRVTPSRARFFHEQRILQKVFGEWREEWWVSQREWKLCMRADCHYRYYLYNLMFQSWKTFVHQQQEMKRRLHRAKHHDTKQKMRQAWKSWLIYVVACRTKRQMQNTALEFRRRSVLCFWWSKWMWRLGQAHADHALHAAAVKHRALSLQLQAWSQWQEQLLHSRQERWKMVIAVQHHQRWQKQRSLKAWLQYLHICRVKRWQNEMAAQFHRVTVLQIHFCDWQWAWEWRQSLSAHQALVEKLAKKMALRRAFAHWKHFMLLQAEEAAQHAAAEEHHRHYLLYFCLRALKDNVTQAHLWRIRTNLAHQLRDTTLLRRFWNLWQSRIEQREERVQLPSLGTAWSHYRMTVLRKCVRVWLRFVHKRRHQQLLQARADGHFQQRALPTAFHMWYRLWQWHQQSRVLHTRAVRFHRETLERQVFAIWRQKMSQHRENRLAERMAILQAEQQLLRRSWFMWHQQAAACHQEQERQAVACAHHHNRLLGKAFCVWKGSAQGLRTERMGRAQAAHFYSAQLLRWAWSMWSERLALRMEEQQKLRRAALHSQHTLLHRTLQKWLTYQDRVRSVLQEVAARERQYNRQLLRWVLRRWRENTVARLDMAKKTSQARAQYNRTLCSKVLVQWREVTSMQIYYREKKAVALREARKALGRGRLRNWFQRWQFYSQREAQQRSQVEQAAQHHRQQLLMEAMARWKAYHLGCVRKKCLQKQSAQLLAQRLGRACFCQWRKQSVDPEHTEYLKLAARKQEQWSTARALWFWAFSLQARVWTAWLGFIFERRRKKARLEQAVQDYHQQLLQEGVTRLLRFAAGMKASRQQLQTQQQVQAAHSLHCAVRHCAELWKKKVLGPGRMSQPPAPITFSRRVTFKDSILSGVAAEAGDATLETKKFRAPPSQGILGSLAVAAGEPCCLELNDARLSRKQPRRPSFLLERLQNQKSPGWCILGEQELEKPPEKGQSMALPRGLSLTRPFLPMVLQNAPGSSAGLELLPPSSFLPHGVGDSARGSAKHTIPGPQPLACPSLTKGPKPSLFLPGDFTSTRIGPDYGYEATGHTKLEAELEGIQQQLQHYQTTKQNLRCPHSQVMPASSQQPTQVAGAKPGGAQARGLGSRTAGKKRTGGGGTTDPAAV", "length": 1201, "header": "tr|A0A9J7HAZ7-1|A0A9J7HAZ7_CRIGR Computationally mapped isoform of Protein SFI1 homolog isoform X15 OS=Cricetulus griseus OX=10029 GN=LOC100771980 PE=4 SV=1 CANONICAL=A0A9J7HCJ4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HCJ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCJ4/entry#A0A9J7HCJ4-1", "sequence": { "sequence": "MEKKTVSRSFRDGVVKKPCSPKALPLNKSAFSGVQRELPRSCHSSSQASHNWARRRLRELRSRCVARKFLYLWIRMTFGRVTPSRARFFHEQRILQKVFGEWREEWWVSQREWKLCMRADCHYRYYLYNLMFQSWKTFVHQQQEMKRRLHRAKHHDTKQKMRQAWKSWLIYVVACRTKRQMQNTALEFRRRSVLCFWWSKWMWRLGQAHADHALHAAAVKHRALSLQLQAWSQWQEQLLHSRQERWKMVIAVQHHQRWQKQRSLKAWLQYLHICRVKRWQNEMAAQFHRVTVLQIHFCDWQWAWEWRQSLSAHQALVEKLAKKMALRRAFAHWKHFMLLQAEEAAQHAAAEEHHRHYLLYFCLRALKDNVTQAHLWRIRTNLAHQLRDTTLLRRFWNLWQSRIEQREERVQLPSLGTAWSHYRMTVLRKCVRVWLRFVHKRRHQQLLQARADGHFQQRALPTAFHMWYRLWQWHQQSRVLHTRAVRFHRETLERQVFAIWRQKMSQHRENRLAERMAILQAEQQLLRRSWFMWHQQAAACHQEQERQAVACAHHHNRLLGKAFCVWKGSAQGLRTERMGRAQAAHFYSAQLLRWAWSMWSERLALRMEEQQKLRRAALHSQHTLLHRTLQKWLTYQDRVRSVLQEVAARERQYNRQLLRWVLRRWRENTVARLDMAKKTSQARAQYNRTLCSKVLVQWREVTSMQIYYREKKAVALREARKALGRGRLRNWFQRWQFYSQREAQQRSQVEQAAQHHRQQLLMEAMARWKAYHLGCVRKKCLQKQSAQLLAQRLGRACFCQWRKQSVDPEHTEYLKLAARKQEQWSTARALWFWAFSLQARVWTAWLGFIFERRRKKARLEQAVQDYHQQLLQEGVTRLLRFAAGMKASRQQLQTQQQVQAAHSLHCAVRHCAELWKKKVLGPGRMSQPPAPITFSRRVTFKDSILSGVAAEAGDATLETKKFRAPPSQGILGSLAVAAGEPCCLELNDARLSRKQPRRPSFLLERLQNQKSPGWCILGEQELEKPPEKGQSMALPRGLSLTRPFLPMVLQNAPGSSAGLELLPPSSFLPHGVGDSARGSAKHTIPGPQPLACPSLTKGPKPSLFLPGDFTSTRIGPDYGYEATVAAGHTKLEAELEGIQQQLQHYQTTKQNLRSCQRQANSLRRWLELSQEEPRPEDWDLEQRVKKELEEVELQIQQLSEELQAQRQPIGTCIARVQALKQALF", "length": 1224, "header": "tr|A0A9J7HCJ4-1|A0A9J7HCJ4_CRIGR Isoform 1 of Protein SFI1 homolog isoform X10 OS=Cricetulus griseus OX=10029 GN=LOC100771980 PE=4 SV=1 CANONICAL=A0A9J7HCJ4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HEG0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCJ4/entry#A0A9J7HEG0-1", "sequence": { "sequence": "MEKKTVSRSFRDGVVKKPCSPKALPLNKSAFSGVQRELPRSCHSSSQASHNWARRRLRELRSRCVARKFLYLWIRMTFGRVTPSRARFFHEQRILQKVFGEWREEWWVSQREWKLCMRADCHYRYYLYNLMFQSWKTFVHQQQEMKRRLHRAKHHDTKQKMRQAWKSWLIYVVACRTKRQMQNTALEFRRRSVLCFWWSKWMWRLGQAHADHALHAAAVKHRALSLQLQAWSQWQEQLLHSRQERWKMVIAVQHHQRWQKQRSLKAWLQYLHICRVKRWQNEMAAQFHRVTVLQIHFCDWQWAWEWRQSLSAHQALVEKLAKKMALRRAFAHWKHFMLLQAEEAAQHAAAEEHHRHYLLYFCLRALKDNVTQAHLWRIRTNLAHQLRDTTLLRRFWNLWQSRIEQREERVQLPSLGTAWSHYRMTVLRKCVRVWLRFVHKRRHQQLLQARADGHFQQRALPTAFHMWYRLWQWHQQSRVLHTRAVRFHRETLERQVFAIWRQKMSQHRENRLAERMAILQAEQQLLRRSWFMWHQQAAACHQEQERQAVACAHHHNRLLGKAFCVWKGSAQGLRTERMGRAQAAHFYSAQLLRWAWSMWSERLALRMEEQQKLRRAALHSQHTLLHRTLQKWLTYQDRVRSVLQEVAARERQYNRQLLRWVLRRWRENTVARLDMAKKTSQARAQYNRTLCSKVLVQWREVTSMQIYYREKKAVALREARKALGRGRLRNWFQRWQFYSQREAQQRSQVEQAAQHHRQQLLMEAMARWKAYHLGCVRKKCLQKQSAQLLAQRLGRACFCQWRKQSVDPEHTEYLKLAARKQEQWSTARALWFWAFSLQARVWTAWLGFIFERRRKKARLEQAVQDYHQQLLQEGVTRLLRFAAGMKASRQQLQTQQQVQAAHSLHCAVRHCAELWKKKVLGPGRMSQPPAPITFSRRVTFKDSILSGVAAEAGDATLETKKFRAPPSQGILGSLAVAAGEPCCLELNDARLSRKQPRRPSFLLERLQNQKSPGWCILGEQELEKPPEKGQSMALPRGLSLTRPFLPMVLQNAPGSSAGLELLPPSSFLPHGVGDSARGSAKHTIPGPQPLACPSLTKGPKPSLFLPGDFTSTRIGPDYGYEATVAAGHTKLEAELEGIQQQLQHYQTTKQNLRCPHSQVMPASSQQPTQVAGAKPGGAQARGLGSRTAGKKRTGGGGTTDPAAV", "length": 1204, "header": "tr|A0A9J7HEG0-1|A0A9J7HEG0_CRIGR Computationally mapped isoform of Protein SFI1 homolog isoform X14 OS=Cricetulus griseus OX=10029 GN=LOC100771980 PE=4 SV=1 CANONICAL=A0A9J7HCJ4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J3Z3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCJ4/entry#A0A9J7J3Z3-1", "sequence": { "sequence": "MEKKTVSRSFRDGVVKKPCSPKALPLNKSAFSGVQRELPRSCHSSSQASHNWARRRLRELRSRCVARKFLYLWIRMTFGRVTPSRARFFHEQRILQKVFGEWREEWWVSQREWKLCMRADCHYRYYLYNLMFQSWKTFVHQQQEMKRRLHRAKHHDTKQKMRQAWKSWLIYVVACRTKRQMQNTALEFRRRSVLCFWWSKWMWRLGQAHADHALHAAAVKHRALSLQLQAWSQWQEQLLHSRQERWKMVIAVQHHQRWQKQRSLKAWLQYLHICRVKRWQNEMAAQFHRVTVLQIHFCDWQWAWEWRQSLSAHQALVEKLAKKMALRRAFAHWKHFMLLQAEEAAQHAAAEEHHRHYLLLLRRFWNLWQSRIEQREERVQLPSLGTAWSHYRMTVLRKCVRVWLRFVHKRRHQQLLQARADGHFQQRALPTAFHMWYRLWQWHQQSRVLHTRAVRFHRETLERQVFAIWRQKMSQHRENRLAERMAILQAEQQLLRRSWFMWHQQAAACHQEQERQAVACAHHHNRLLGKAFCVWKGSAQGLRTERMGRAQAAHFYSAQLLRWAWSMWSERLALRMEEQQKLRRAALHSQHTLLHRTLQKWLTYQDRVRSVLQEVAARERQYNRQLLRWVLRRWRENTVARLDMAKKTSQARAQYNRTLCSKVLVQWREVTSMQIYYREKKAVALREARKALGRGRLRNWFQRWQFYSQREAQQRSQVEQAAQHHRQQLLMEAMARWKAYHLGCVRKKCLQKQSAQLLAQRLGRACFCQWRKQLAARKQEQWSTARALWFWAFSLQARVWTAWLGFIFERRRKKARLEQAVQDYHQQLLQEGVTRLLRFAAGMKASRQQLQTQQQVQAAHSLHCAVRHCAELWKKKVLGPGRMSQPPAPITFSRRVTFKDSILSGVAAEAGDATLETKKFRAPPSQGILGSLAVAAGEPCCLELNDARLSRKQPRRPSFLLERLQNQKSPGWCILGEQELEKPPEKGQSMALPRGLSLTRPFLPMVLQNAPGSSAGLELLPPSSFLPHGVGDSARGSAKHTIPGPQPLACPSLTKGPKPSLFLPGDFTSTRIGPDYGYEATVAAGHTKLEAELEGIQQQLQHYQTTKQNLRSCQRQANSLRRWLELSQEEPRPEDWDLEQRVKKELEEVELQIQQLSEELQAQRQPIGTCIARVQALKQALF", "length": 1182, "header": "tr|A0A9J7J3Z3-1|A0A9J7J3Z3_CRIGR Computationally mapped isoform of Protein SFI1 homolog isoform X17 OS=Cricetulus griseus OX=10029 GN=LOC100771980 PE=4 SV=1 CANONICAL=A0A9J7HCJ4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KBQ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCJ4/entry#A0A9J7KBQ0-1", "sequence": { "sequence": "MEKKTVSRSFRDGVVKKPCSPKALPLNKSAFSGVQRELPRSCHSSSQASHNWARRRLRELRSRCVARKFLYLWIRMTFGRVTPSRARFFHEQRILQKVFGEWREEWWVSQREWKLCMRADCHYRYYLYNLMFQSWKTFVHQQQEMKRRLHRAKHHDTKQKMRQAWKSWLIYVVACRTKRQMQNTALEFRRRSVLCFWWSKWMWRLGQAHADHALHAAAVKHRALSLQLQAWSQWQEQLLHSRQERWKMVIAVQHHQRWQKQRSLKAWLQYLHICRVKRWQNEMAAQFHRVTVLQIHFCDWQWAWEWRQSLSAHQALVEKLAKKMALRRAFAHWKHFMLLQAEEAAQHAAAEEHHRHYLLLLRRFWNLWQSRIEQREERVQLPSLGTAWSHYRMTVLRKCVRVWLRFVHKRRHQQLLQARADGHFQQRALPTAFHMWYRLWQWHQQSRVLHTRAVRFHRETLERQVFAIWRQKMSQHRENRLAERMAILQAEQQLLRRSWFMWHQQAAACHQEQERQAVACAHHHNRLLGKAFCVWKGSAQGLRTERMGRAQAAHFYSAQLLRWAWSMWSERLALRMEEQQKLRRAALHSQHTLLHRTLQKWLTYQDRVRSVLQEVAARERQYNRQLLRWVLRRWRENTVARLDMAKKTSQARAQYNRTLCSKVLVQWREVTSMQIYYREKKAVALREARKALGRGRLRNWFQRWQFYSQREAQQRSQVEQAAQHHRQQLLMEAMARWKAYHLGCVRKKCLQKQSAQLLAQRLGRACFCQWRKQSVDPEHTEYLKLAARKQEQWSTARALWFWAFSLQARVWTAWLGFIFERRRKKARLEQAVQDYHQQLLQEGVTRLLRFAAGMKASRQQLQTQQQVQAAHSLHCAVRHCAELWKKKVLGPGRMSQPPAPITFSRRVTFKDSILSGVAAEAGDATLETKKFRAPPSQGILGSLAVAAGEPCCLELNDARLSRKQPRRPSFLLERLQNQKSPGWCILGEQELEKPPEKGQSMALPRGLSLTRPFLPMVLQNAPGSSAGLELLPPSSFLPHGVGDSARGSAKHTIPGPQPLACPSLTKGPKPSLFLPGDFTSTRIGPDYGYEATVAAGHTKLEAELEGIQQQLQHYQTTKQNLRSCQRQANSLRRWLELSQEEPRPEDWDLEQRVKKELEEVELQIQQLSEELQAQRQPIGTCIARVQALKQALF", "length": 1193, "header": "tr|A0A9J7KBQ0-1|A0A9J7HCJ4_CRIGR Computationally mapped isoform of Protein SFI1 homolog isoform X10 OS=Cricetulus griseus OX=10029 GN=LOC100771980 PE=4 SV=1 CANONICAL=A0A9J7HCJ4-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 82, "start_aa": "Thr", "end_pos": 82, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr82", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EU66", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EU66" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EU66", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EU66" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100771980", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771980", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "phosphatase binding", "id": "GO:0019902", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019902", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCJ4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCJ4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 27, "end_pos": 29, "annotation": "n_glycosylation_sequon" }, { "start_pos": 369, "end_pos": 371, "annotation": "n_glycosylation_sequon" }, { "start_pos": 687, "end_pos": 689, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 82 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 27, "end_pos": 29 }, { "start_pos": 369, "end_pos": 371 }, { "start_pos": 687, "end_pos": 689 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7HC18-1", "uniprot_ac": "A0A9J7HC18", "uniprot_id": "A0A9J7HC18_CRIGR", "mass": { "chemical_mass": 102983.0, "monoisotopic_mass": 102983.0 }, "refseq": { "ac": "XP_035308790", "name": "patched domain-containing protein 4 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308790" }, "gene_names": [ { "name": "Ptchd4", "type": "recommended", "evidence": [ { "id": "A0A9J7HC18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HC18" } ] }, { "name": "Ptchd4", "type": "synonym", "evidence": [ { "id": "XP_035308790", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308790" } ] } ], "protein_names": [ { "name": "Patched domain-containing protein 4 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7HC18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HC18/entry#names_and_taxonomy" } ] }, { "name": "patched domain-containing protein 4 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035308790", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308790" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035308790", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308790" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HC18", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HC18" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ptchd4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HC18", "locus": {} } ], "crossref": [ { "id": "A0A9J7HC18", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HC18", "database": "AlphaFoldDB", "categories": [] }, { "id": "100751000", "url": "https://www.ncbi.nlm.nih.gov/gene/100751000", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000731", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000731", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003392", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003392", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051697", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051697", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100751000", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751000", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HC18", "url": "https://www.orthodb.org/?gene=A0A9J7HC18", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10796", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10796", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10796:SF15", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10796:SF15", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02460", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02460", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035308790", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308790", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7EZ03", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZ03", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EZ03-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZ03-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HC18", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HC18", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HC18-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HC18-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MCFLRRPGAPASWIWWRMLRQVLRRGLQSFCHRLGLCVSRHPVFFLTVPAVLTITFGLSALNRFQTEGDLERLVAPSHSLAKIERSLASSLFPLDQSKSQLYSDLHTPGRYGRVILLSSPGDNILLQAEGILQTHRAVLEMKVNHKGYNYTFSHLCVLRNQDKKCVLDDIISVLEDLRQAAVSNKTTARVQVRYPNTKLKDGRNSFIGHQLGGVVEVPNSKDQRVKSARAIQITYYLQTYGSATQDLIGEKWENEFCKLMRKLQEEHQDLQLYSLASFSLWRDFHKTSILARSKVLVSLVLILTTATLSSSMKDCLRSKPFLGLLGVLTVCISIATAAGIIFITDGKYNSTLLGIPFFAMGHGTKGVFELLSGWRRTKENLPFKDRVADAYSDVMVTYTMTSSLYFITFGMGASPFTNIEAVKIFCQNMCVSILLNYFYIFSFFGSCLVFAGQLEQNRYHSIFCCKIPSAEYLDRKPVWFQTVMSDGHQQTSHHETNPYQHHFIQHFLREHYNEWITNIYVKPFVVILYLIYASFSFMGCLQISDGASIINLLASDSPSVSYAMVQQKYFSNYSPVIGFYVYEPLEYWNSSVQEDLQRLCSGFTAVSWVEQYYQFLKVSNISASNKTDFISVLQSSFLKKPEFQHFRNDIIFSKAGDENNIIASRLYLVARTSRDKQKEVIEVLDKLRPLSLSKSIRFIVFNPSFVFTDHYSLSVTVPVLIAGFGVLLVLILTFILVIHPLGNFWLILSVTSIELGVLGLMTLWNVDMDCISILCLIYTLNFAIDHCAPLLYTFVLATEHTRTQCIKRSLQEHGTAILQNITSFLIGLVPLLFVPSNLTFTLFKCLLLSGGCTLLHCFVILPVFLTFFPPSKKHHKKKKRAKRKEREEIECIEIQENPDHVTTV", "length": 904, "header": "tr|A0A9J7HC18-1|A0A9J7HC18_CRIGR Isoform 1 of Patched domain-containing protein 4 isoform X2 OS=Cricetulus griseus OX=10029 GN=Ptchd4 PE=3 SV=1 CANONICAL=A0A9J7HC18-1" }, "isoforms": [ { "isoform_ac": "A0A9J7EZ03-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HC18/entry#A0A9J7EZ03-1", "sequence": { "sequence": "MCFLRRPGAPASWIWWRMLRQVLRRGLQSFCHRLGLCVSRHPVFFLTVPAVLTITFGLSALNRFQTEGDLERLVAPSHSLAKIERSLASSLFPLDQSKSQLYSDLHTPGRYGRVILLSSPGDNILLQAEGILQTHRAVLEMKDGRNSFIGHQLGGVVEVPNSKDQRVKSARAIQITYYLQTYGSATQDLIGEKWENEFCKLMRKLQEEHQDLQLYSLASFSLWRDFHKTSILARSKVLVSLVLILTTATLSSSMKDCLRSKPFLGLLGVLTVCISIATAAGIIFITDGKYNSTLLGIPFFAMGHGTKGVFELLSGWRRTKENLPFKDRVADAYSDVMVTYTMTSSLYFITFGMGASPFTNIEAVKIFCQNMCVSILLNYFYIFSFFGSCLVFAGQLEQNRYHSIFCCKIPSAEYLDRKPVWFQTVMSDGHQQTSHHETNPYQHHFIQHFLREHYNEWITNIYVKPFVVILYLIYASFSFMGCLQISDGASIINLLASDSPSVSYAMVQQKYFSNYSPVIGFYVYEPLEYWNSSVQEDLQRLCSGFTAVSWVEQYYQFLKVSNISASNKTDFISVLQSSFLKKPEFQHFRNDIIFSKAGDENNIIASRLYLVARTSRDKQKEVIEVLDKLRPLSLSKSIRFIVFNPSFVFTDHYSLSVTVPVLIAGFGVLLVLILTFILVIHPLGNFWLILSVTSIELGVLGLMTLWNVDMDCISILCLIYTLNFAIDHCAPLLYTFVLATEHTRTQCIKRSLQEHGTAILQNITSFLIGLVPLLFVPSNLTFTLFKCLLLSGGCTLLHCFVILPVFLTFFPPSKKHHKKKKRAKRKEREEIECIEIQENPDHVTTV", "length": 846, "header": "tr|A0A9J7EZ03-1|A0A9J7HC18_CRIGR Computationally mapped isoform of Patched domain-containing protein 4 isoform X2 OS=Cricetulus griseus OX=10029 GN=Ptchd4 PE=3 SV=1 CANONICAL=A0A9J7HC18-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HC18-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HC18/entry#A0A9J7HC18-1", "sequence": { "sequence": "MCFLRRPGAPASWIWWRMLRQVLRRGLQSFCHRLGLCVSRHPVFFLTVPAVLTITFGLSALNRFQTEGDLERLVAPSHSLAKIERSLASSLFPLDQSKSQLYSDLHTPGRYGRVILLSSPGDNILLQAEGILQTHRAVLEMKVNHKGYNYTFSHLCVLRNQDKKCVLDDIISVLEDLRQAAVSNKTTARVQVRYPNTKLKDGRNSFIGHQLGGVVEVPNSKDQRVKSARAIQITYYLQTYGSATQDLIGEKWENEFCKLMRKLQEEHQDLQLYSLASFSLWRDFHKTSILARSKVLVSLVLILTTATLSSSMKDCLRSKPFLGLLGVLTVCISIATAAGIIFITDGKYNSTLLGIPFFAMGHGTKGVFELLSGWRRTKENLPFKDRVADAYSDVMVTYTMTSSLYFITFGMGASPFTNIEAVKIFCQNMCVSILLNYFYIFSFFGSCLVFAGQLEQNRYHSIFCCKIPSAEYLDRKPVWFQTVMSDGHQQTSHHETNPYQHHFIQHFLREHYNEWITNIYVKPFVVILYLIYASFSFMGCLQISDGASIINLLASDSPSVSYAMVQQKYFSNYSPVIGFYVYEPLEYWNSSVQEDLQRLCSGFTAVSWVEQYYQFLKVSNISASNKTDFISVLQSSFLKKPEFQHFRNDIIFSKAGDENNIIASRLYLVARTSRDKQKEVIEVLDKLRPLSLSKSIRFIVFNPSFVFTDHYSLSVTVPVLIAGFGVLLVLILTFILVIHPLGNFWLILSVTSIELGVLGLMTLWNVDMDCISILCLIYTLNFAIDHCAPLLYTFVLATEHTRTQCIKRSLQEHGTAILQNITSFLIGLVPLLFVPSNLTFTLFKCLLLSGGCTLLHCFVILPVFLTFFPPSKKHHKKKKRAKRKEREEIECIEIQENPDHVTTV", "length": 904, "header": "tr|A0A9J7HC18-1|A0A9J7HC18_CRIGR Isoform 1 of Patched domain-containing protein 4 isoform X2 OS=Cricetulus griseus OX=10029 GN=Ptchd4 PE=3 SV=1 CANONICAL=A0A9J7HC18-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EZ03", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZ03" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EZ03", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZ03" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100751000", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751000", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HC18", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HC18" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 149, "end_pos": 151, "annotation": "n_glycosylation_sequon" }, { "start_pos": 184, "end_pos": 186, "annotation": "n_glycosylation_sequon" }, { "start_pos": 349, "end_pos": 351, "annotation": "n_glycosylation_sequon" }, { "start_pos": 572, "end_pos": 574, "annotation": "n_glycosylation_sequon" }, { "start_pos": 589, "end_pos": 591, "annotation": "n_glycosylation_sequon" }, { "start_pos": 620, "end_pos": 622, "annotation": "n_glycosylation_sequon" }, { "start_pos": 625, "end_pos": 627, "annotation": "n_glycosylation_sequon" }, { "start_pos": 820, "end_pos": 822, "annotation": "n_glycosylation_sequon" }, { "start_pos": 837, "end_pos": 839, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7HC18", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HC18" }, { "id": "PS50156", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50156" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SSD", "eco_id": "ECO_0000259", "start_pos": 291, "end_pos": 450, "start_aa": "Ala", "end_aa": "Phe", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 149, "end_pos": 151 }, { "start_pos": 184, "end_pos": 186 }, { "start_pos": 349, "end_pos": 351 }, { "start_pos": 572, "end_pos": 574 }, { "start_pos": 589, "end_pos": 591 }, { "start_pos": 620, "end_pos": 622 }, { "start_pos": 625, "end_pos": 627 }, { "start_pos": 820, "end_pos": 822 }, { "start_pos": 837, "end_pos": 839 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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"uniprot_ac": "A0A9J7H868", "uniprot_id": "A0A9J7H868_CRIGR", "mass": { "chemical_mass": 29939.0, "monoisotopic_mass": 29939.0 }, "refseq": { "ac": "XP_035304353", "name": "lysM and putative peptidoglycan-binding domain-containing protein 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304353" }, "gene_names": [ { "name": "Lysmd1", "type": "recommended", "evidence": [ { "id": "A0A9J7H868", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H868" } ] }, { "name": "Lysmd1", "type": "synonym", "evidence": [ { "id": "XP_035304353", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304353" } ] } ], "protein_names": [ { "name": "LysM and putative peptidoglycan-binding domain-containing protein 1", "type": "recommended", "evidence": [ { "id": "A0A9J7H868", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H868/entry#names_and_taxonomy" } ] }, { "name": "lysM and putative peptidoglycan-binding domain-containing protein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_035304353", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304353" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613699.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035304353", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304353" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H868", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H868" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Lysmd1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H868", "locus": {} } ], "crossref": [ { "id": "A0A9J7H868", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H868", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00118", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00118", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100768796", "url": "https://www.ncbi.nlm.nih.gov/gene/100768796", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR018392", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018392", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036779", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036779", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045030", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045030", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100768796", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768796", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7F2E2", "url": "https://www.orthodb.org/?gene=A0A9J7F2E2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7H868", "url": "https://www.orthodb.org/?gene=A0A9J7H868", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR20932", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20932", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR20932:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20932:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01476", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01476", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035304353", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304353", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F2E2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2E2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F2E2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2E2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H868", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H868", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H868-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H868-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKSFSYFLFFVVFKRPHRSPEYRHSHREGPRCLETKNLSWHLEMASPSRQPPLGGSGLLHGSRARSYGSLVQSSCSPVRERRLEHQLEPGDTLAGLALKYGVTMEQIKRTNRLYTNDSIFLKKTLYIPILTEPRDLFNGLDSEEENDGEGEVRPSKDGAGSHSSKRRSQESGSGQADGEALTPHQGTPTSTHDLSASDFLKKLDSQISLSKKAAAQKLRKGESGLPEEGAGLHLSSPRMQQRAVLGPVPLTRTSRTQSLRDQEDEIFKL", "length": 269, "header": "tr|A0A9J7H868-1|A0A9J7H868_CRIGR Isoform 1 of LysM and putative peptidoglycan-binding domain-containing protein 1 OS=Cricetulus griseus OX=10029 GN=Lysmd1 PE=4 SV=1 CANONICAL=A0A9J7H868-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F2E2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H868/entry#A0A9J7F2E2-1", "sequence": { "sequence": "MKSFSYFLFFVVFKRPHRSPEYRHSHREGPRCLETKNLQPPLGGSGLLHGSRARSYGSLVQSSCSPVRERRLEHQLEPGDTLAGLALKYGVTMEQIKRTNRLYTNDSIFLKKTLYIPILTEPRDLFNGLDSEEENDGEGEVRPSKDGAGSHSSKRRSQESGSGQADGEALTPHQGTPTSTHDLSASDFLKKLDSQISLSKKAAAQKLRKGESGLPEEGAGLHLSSPRMQQRAVLGPVPLTRTSRTQSLRDQEDEIFKL", "length": 258, "header": "tr|A0A9J7F2E2-1|A0A9J7H868_CRIGR Computationally mapped isoform of LysM and putative peptidoglycan-binding domain-containing protein 1 OS=Cricetulus griseus OX=10029 GN=Lysmd1 PE=4 SV=1 CANONICAL=A0A9J7H868-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H868-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H868/entry#A0A9J7H868-1", "sequence": { "sequence": "MKSFSYFLFFVVFKRPHRSPEYRHSHREGPRCLETKNLSWHLEMASPSRQPPLGGSGLLHGSRARSYGSLVQSSCSPVRERRLEHQLEPGDTLAGLALKYGVTMEQIKRTNRLYTNDSIFLKKTLYIPILTEPRDLFNGLDSEEENDGEGEVRPSKDGAGSHSSKRRSQESGSGQADGEALTPHQGTPTSTHDLSASDFLKKLDSQISLSKKAAAQKLRKGESGLPEEGAGLHLSSPRMQQRAVLGPVPLTRTSRTQSLRDQEDEIFKL", "length": 269, "header": "tr|A0A9J7H868-1|A0A9J7H868_CRIGR Isoform 1 of LysM and putative peptidoglycan-binding domain-containing protein 1 OS=Cricetulus griseus OX=10029 GN=Lysmd1 PE=4 SV=1 CANONICAL=A0A9J7H868-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F2E2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2E2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F2E2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2E2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100768796", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768796", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 116, "end_pos": 118, "annotation": "n_glycosylation_sequon" }, { "start_pos": 37, "end_pos": 39, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7H868", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H868" }, { "id": "PS51782", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51782" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "LysM", "eco_id": "ECO_0000259", "start_pos": 83, "end_pos": 127, "start_aa": "Leu", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 116, "end_pos": 118 }, { "start_pos": 37, "end_pos": 39 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7HBX1-1", "uniprot_ac": "A0A9J7HBX1", "uniprot_id": "A0A9J7HBX1_CRIGR", "mass": { "chemical_mass": 25541.0, "monoisotopic_mass": 25541.0 }, "refseq": { "ac": "XP_035307407", "name": "keratin-associated protein 10-9-like isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307407" }, "gene_names": [ { "name": "LOC113833355", "type": "recommended", "evidence": [ { "id": "A0A9J7HBX1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBX1" } ] }, { "name": "LOC113833355", "type": "synonym", "evidence": [ { "id": "XP_035307407", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307407" } ] } ], "protein_names": [ { "name": "Keratin-associated protein 10-9-like isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7HBX1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBX1/entry#names_and_taxonomy" } ] }, { "name": "keratin-associated protein 10-9-like isoform X1", "type": "synonym", "evidence": [ { "id": "XP_035307407", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307407" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035307407", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307407" } ] }, { "annotation": "In the hair cortex, hair keratin intermediate filaments are embedded in an interfilamentous matrix, consisting of hair keratin-associated proteins (KRTAP), which are essential for the formation of a rigid and resistant hair shaft through their extensive disulfide bond cross-linking with abundant cysteine residues of hair keratins. The matrix proteins include the high-sulfur and high-glycine-tyrosine keratins.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F3G6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3G6#function" }, { "database": "UniProtKB", "id": "ARBA00003327", "url": "https://www.uniprot.org/uniprotkb/ARBA00003327#function" }, { "database": "UniProtKB", "id": "A0A9J7F884", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F884#function" }, { "database": "UniProtKB", "id": "A0A9J7KEG6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEG6#function" }, { "database": "UniProtKB", "id": "A0A9J7HBX1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBX1#function" }, { "database": "UniProtKB", "id": "A0A9J7JC29", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JC29#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HBX1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBX1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113833355", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBX1", "locus": {} } ], "crossref": [ { "id": "A0A9J7HBX1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HBX1", "database": "AlphaFoldDB", "categories": [] }, { "id": "113833355", "url": "https://www.ncbi.nlm.nih.gov/gene/113833355", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002494", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002494", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113833355", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113833355", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR23262", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23262", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23262:SF170", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23262:SF170", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23262:SF50", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23262:SF50", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13885", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13885", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035307407", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307407", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F3G6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3G6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F3G6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3G6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F884", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F884", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F884-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F884-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F8I7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8I7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F8I7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8I7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HBX1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBX1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HBX1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBX1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JC29", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JC29", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JC29-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JC29-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KEG6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEG6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KEG6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEG6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTHCCEPSCCQPSCCVPSCCQPSCCAPAPCVTLVCTPVSCGSSPCCQSSCAPCCQQSSCQPACCPCSPCQQLCCVPVCCKPVCCTPICCGSSCCQQSSCQPSCCTSSPCCMTLCCKPVCCTPSCCQQSSCQPSCCTSSPCCVTLCCKPVCCTPICSGSSSCCQQSSCQPSCCQPSCCVPVCCKPVCCKPCSSVSLLCRPVCRPACCVPTSSCCASSCQPSCCKPCSSMSLLCRPACSSQACCGLSSGQKSSC", "length": 252, "header": "tr|A0A9J7HBX1-1|A0A9J7HBX1_CRIGR Isoform 1 of Keratin-associated protein 10-9-like isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC113833355 PE=4 SV=1 CANONICAL=A0A9J7HBX1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F3G6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBX1/entry#A0A9J7F3G6-1", "sequence": { "sequence": "MAASTMSVCSDACTNSSWQVDDCPESCCEPSCCQPSCCVPSCCQPSCCAPAPCVTLVCTPVSCGSSPCCQSSCAPCCQQSSCQPACCPCSPCQQLCCVPVCCKPVCCTPICCGSSLCCKPVCCTPICSGSSSCCQQSSCQPSCCQPSCCVPVCCKPVCCKPCSSVSLLCRPVCRPACCVPTSSCCASSCQPSCCKPCSSMSLLCRPACSSQACCGLSSGQKSSC", "length": 224, "header": "tr|A0A9J7F3G6-1|A0A9J7HBX1_CRIGR Computationally mapped isoform of Keratin-associated protein 10-9-like isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC113833355 PE=4 SV=1 CANONICAL=A0A9J7HBX1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F884-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBX1/entry#A0A9J7F884-1", "sequence": { "sequence": "MAASTMSVCSDACTNSSWQVDDCPESCCEPSCCQPSCCVPSCCQPSCCAPAPCVTLVCTPVSCGSSPCCQSSCAPCCQQSSCQPACCPCSPCQQLCCVPVCCKPVCCTPICCGSCCQPSCCTSSPCCVTLCCKPVCCTPICSGSSSCCQQSSCQPSCCQPSCCVPVCCKPVCCKPCSSVSLLCRPVCRPACCVPTSSCCASSCQPSCCKPCSSMSLLCRPACSSQACCGLSSGQKSSC", "length": 238, "header": "tr|A0A9J7F884-1|A0A9J7HBX1_CRIGR Computationally mapped isoform of Keratin-associated protein 10-9-like isoform X1 OS=Cricetulus 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"MTHCCEPSCCQPSCCVPSCCQPSCCAPAPCVTLVCTPVSCGSSPCCQSSCAPCCQQSSCQPACCPCSPCQQLCCVPVCCKPVCCTPICCGSSCCQQSSCQPSCCTSSPCCMTLCCKPVCCTPSCCQQSSCQPSCCTSSPCCVTLCCKPVCCTPICSGSSSCCQQSSCQPSCCQPSCCVPVCCKPVCCKPCSSVSLLCRPVCRPACCVPTSSCCASSCQPSCCKPCSSMSLLCRPACSSQACCGLSSGQKSSC", "length": 252, "header": "tr|A0A9J7HBX1-1|A0A9J7HBX1_CRIGR Isoform 1 of Keratin-associated protein 10-9-like isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC113833355 PE=4 SV=1 CANONICAL=A0A9J7HBX1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JC29-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBX1/entry#A0A9J7JC29-1", "sequence": { "sequence": "MAASTMSVCSDACTNSSWQVDDCPESCCEPSCCQPSCCVPSCCQPSCCAPAPCVTLVCTPVSCGSSPCCQSSCAPCCQQSSCQPACCPCSPCQQLCCVPVCCKPVCCTPICCVTLCCKPVCCTPICSGSSSCCQQSSCQPSCCQPSCCVPVCCKPVCCKPCSSVSLLCRPVCRPACCVPTSSCCASSCQPSCCKPCSSMSLLCRPACSSQACCGLSSGQKSSC", "length": 223, "header": "tr|A0A9J7JC29-1|A0A9J7JC29_CRIGR Computationally mapped isoform of Keratin-associated protein 10-3-like isoform X6 OS=Cricetulus griseus 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"MLGPMFSLSVALHPTKINTLHFEYHNEMKWDIALSSEKGLRTLGSYGTFLLGSRNQDWLGVPRQLGTKAWDRQLYPEWTEVQAPDCWRGGPVSLKVRNDGPTLIGANASFSITLHFPESQKVLPDGQVIWTNNTIVNGSQVWGGQPVYPQGPDDACIFPDGGPCPSGPRPPRRSFVYVWKTWGQYWQVLGGPVSRLSIATGHSWVGTHTMEVTVYHRRGPQSYVPLAHSSSTFTITGKSLERNKASQADGMRWEGCLGLERGSQCQPSKGRGRKIWAEKCETNSHLASQLVCEEHGCGRGVTQAWFLILLAPTPDQVPFSVSVSQLQALDGENKRFLRNQPLIFALHLHDPSGYLVEADLSYTWNFGDNTGTLISRAVEVTHTYLESGSVTAQVVLQAAIPLSSCGSSPVPGTTDGYMPTAEASGTTSILGTTTEGVGTTTGQMPTTQPSGTTVVQMPTTEGIATTSKQLPTSAVLDTTLAEMSTADGRGTTPTRPAGVTDAQAMTTELVETTTEALPTPEPEGPDASPFLPTESSTGSVTPLLDGIDTLMLVKRQVPLDCVLYRYGSFSLTLDIVQGIENAEILQAVTSSKGDAFELTVSCQGGLPKEACMDISSPGCQPPAQRLCQPVPPSPDCQLVLHQALKGGSGTYCLNVSLADANSLAVASTQIVVPGQEGGLGQAPLLVGVLLVLMAVVLASLMYRRRLGKQGPVSQTPNGSTHWLRLPSVFRTCHTGENSPLLSGQQV", "length": 746, "header": "tr|A0A9J7H9U7-1|A0A9J7H9U7_CRIGR Isoform 1 of Melanocyte protein PMEL isoform X2 OS=Cricetulus griseus OX=10029 GN=Pmel PE=3 SV=1 CANONICAL=A0A9J7H9U7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F4F2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9U7/entry#A0A9J7F4F2-1", "sequence": { "sequence": "MLGPMFSLSVALHPTKINTLHFEYHNEMKWDIALSSEKGLRTLGSYGTFLLGSRNQDWLGVPRQLGTKAWDRQLYPEWTEVQAPDCWRGGPVSLKVRNDGPTLIGANASFSITLHFPESQKVLPDGQVIWTNNTIVNGSQVWGGQPVYPQGPDDACIFPDGGPCPSGPRPPRRSFVYVWKTWGQYWQVLGGPVSRLSIATGHSWVGTHTMEVTVYHRRGPQSYVPLAHSSSTFTITDQVPFSVSVSQLQALDGENKRFLRNQPLIFALHLHDPSGYLVEADLSYTWNFGDNTGTLISRAVEVTHTYLESGSVTAQVVLQAAIPLSSCGSSPVPGTTDGYMPTAEASGTTSILGTTTEGVGTTTGQMPTTQPSGTTVVQMPTTEGIATTSKQLPTSAVLDTTLAEMSTADGRGTTPTRPAGVTDAQAMTTELVETTTEALPTPEPEGPDASPFLPTESSTGSVTPLLDGIDTLMLVKRQVPLDCVLYRYGSFSLTLDIVQGIENAEILQAVTSSKGDAFELTVSCQGGLPKEACMDISSPGCQPPAQRLCQPVPPSPDCQLVLHQALKGGSGTYCLNVSLADANSLAVASTQIVVPGQEGGLGQAPLLVGVLLVLMAVVLASLMYRRRLGKQGPVSQTPNGSTHWLRLPSVFRTCHTGENSPLLSGQQV", "length": 668, "header": "tr|A0A9J7F4F2-1|A0A9J7H9U7_CRIGR Computationally mapped isoform of Melanocyte protein PMEL isoform X2 OS=Cricetulus griseus OX=10029 GN=Pmel PE=3 SV=1 CANONICAL=A0A9J7H9U7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H9U7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9U7/entry#A0A9J7H9U7-1", "sequence": { "sequence": "MLGPMFSLSVALHPTKINTLHFEYHNEMKWDIALSSEKGLRTLGSYGTFLLGSRNQDWLGVPRQLGTKAWDRQLYPEWTEVQAPDCWRGGPVSLKVRNDGPTLIGANASFSITLHFPESQKVLPDGQVIWTNNTIVNGSQVWGGQPVYPQGPDDACIFPDGGPCPSGPRPPRRSFVYVWKTWGQYWQVLGGPVSRLSIATGHSWVGTHTMEVTVYHRRGPQSYVPLAHSSSTFTITGKSLERNKASQADGMRWEGCLGLERGSQCQPSKGRGRKIWAEKCETNSHLASQLVCEEHGCGRGVTQAWFLILLAPTPDQVPFSVSVSQLQALDGENKRFLRNQPLIFALHLHDPSGYLVEADLSYTWNFGDNTGTLISRAVEVTHTYLESGSVTAQVVLQAAIPLSSCGSSPVPGTTDGYMPTAEASGTTSILGTTTEGVGTTTGQMPTTQPSGTTVVQMPTTEGIATTSKQLPTSAVLDTTLAEMSTADGRGTTPTRPAGVTDAQAMTTELVETTTEALPTPEPEGPDASPFLPTESSTGSVTPLLDGIDTLMLVKRQVPLDCVLYRYGSFSLTLDIVQGIENAEILQAVTSSKGDAFELTVSCQGGLPKEACMDISSPGCQPPAQRLCQPVPPSPDCQLVLHQALKGGSGTYCLNVSLADANSLAVASTQIVVPGQEGGLGQAPLLVGVLLVLMAVVLASLMYRRRLGKQGPVSQTPNGSTHWLRLPSVFRTCHTGENSPLLSGQQV", "length": 746, "header": "tr|A0A9J7H9U7-1|A0A9J7H9U7_CRIGR Isoform 1 of Melanocyte protein PMEL isoform X2 OS=Cricetulus griseus OX=10029 GN=Pmel PE=3 SV=1 CANONICAL=A0A9J7H9U7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J4F5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9U7/entry#A0A9J7J4F5-1", "sequence": { "sequence": "MDVPRRCPLPLFVLSALLAVGAVEGSRNQDWLGVPRQLGTKAWDRQLYPEWTEVQAPDCWRGGPVSLKVRNDGPTLIGANASFSITLHFPESQKVLPDGQVIWTNNTIVNGSQVWGGQPVYPQGPDDACIFPDGGPCPSGPRPPRRSFVYVWKTWGQYWQVLGGPVSRLSIATGHSWVGTHTMEVTVYHRRGPQSYVPLAHSSSTFTITDQVPFSVSVSQLQALDGENKRFLRNQPLIFALHLHDPSGYLVEADLSYTWNFGDNTGTLISRAVEVTHTYLESGSVTAQVVLQAAIPLSSCGSSPVPGTTDGYMPTAEASGTTSILGTTTEGVGTTTGQMPTTQPSGTTVVQMPTTEGIATTSKQLPTSAVLDTTLAEMSTADGRGTTPTRPAGVTDAQAMTTELVETTTEALPTPEPEGPDASPFLPTESSTGSVTPLLDGIDTLMLVKRQVPLDCVLYRYGSFSLTLDIVQGIENAEILQAVTSSKGDAFELTVSCQGGLPKEACMDISSPGCQPPAQRLCQPVPPSPDCQLVLHQALKGGSGTYCLNVSLADANSLAVASTQIVVPGQEGGLGQAPLLVGVLLVLMAVVLASLMYRRRLGKQGPVSQTPNGSTHWLRLPSVFRTCHTGENSPLLSGQQV", "length": 641, "header": "tr|A0A9J7J4F5-1|A0A9J7J4F5_CRIGR Computationally mapped isoform of Melanocyte protein PMEL isoform X4 OS=Cricetulus griseus OX=10029 GN=Pmel PE=3 SV=1 CANONICAL=A0A9J7H9U7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F4F2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4F2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F4F2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4F2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100769117", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769117", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H9U7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9U7" } ], "pmid": "" }, { "name": "melanosome", "id": "GO:0042470", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042470", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H9U7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9U7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "melanosome organization", "id": "GO:0032438", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032438", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H9U7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9U7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 107, "end_pos": 109, "annotation": "n_glycosylation_sequon" }, { "start_pos": 132, "end_pos": 134, "annotation": "n_glycosylation_sequon" }, { "start_pos": 137, "end_pos": 139, "annotation": "n_glycosylation_sequon" }, { "start_pos": 654, "end_pos": 656, "annotation": "n_glycosylation_sequon" }, { "start_pos": 717, "end_pos": 719, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7H9U7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9U7" }, { "id": "PS50093", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50093" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PKD", "eco_id": "ECO_0000259", "start_pos": 359, "end_pos": 396, "start_aa": "Asp", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 107, "end_pos": 109 }, { "start_pos": 132, "end_pos": 134 }, { "start_pos": 137, "end_pos": 139 }, { "start_pos": 654, "end_pos": 656 }, { "start_pos": 717, "end_pos": 719 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": 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"title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7HAC8-1", "uniprot_ac": "A0A9J7HAC8", "uniprot_id": "A0A9J7HAC8_CRIGR", "mass": { "chemical_mass": 100868.0, "monoisotopic_mass": 100868.0 }, "refseq": { "ac": "XP_035307745", "name": "guanine nucleotide exchange factor VAV3 isoform X4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307745" }, "gene_names": [ { "name": "Vav3", "type": "recommended", "evidence": [ { "id": "A0A9J7HAC8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAC8" } ] }, { "name": "Vav3", "type": "synonym", "evidence": [ { "id": "XP_035307745", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307745" } ] } ], "protein_names": [ { "name": "Guanine nucleotide exchange factor VAV3 isoform X4", "type": "synonym", "evidence": [ { "id": "A0A9J7HAC8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAC8/entry#names_and_taxonomy" } ] }, { "name": "guanine nucleotide exchange factor VAV3 isoform X4", "type": "synonym", "evidence": [ { "id": "XP_035307745", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307745" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035307745", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307745" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HAC8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAC8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Vav3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAC8", "locus": {} } ], "crossref": [ { "id": "A0A9J7HAC8", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HAC8", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00160", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00160", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd01223", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01223", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd10407", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd10407", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd11978", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11978", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd11981", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11981", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd20869", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20869", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd21264", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21264", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100768658", "url": 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OS=Cricetulus griseus OX=10029 GN=Vav3 PE=4 SV=1 CANONICAL=A0A9J7HAC8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HAC8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAC8/entry#A0A9J7HAC8-1", "sequence": { "sequence": 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X4 OS=Cricetulus griseus OX=10029 GN=Vav3 PE=4 SV=1 CANONICAL=A0A9J7HAC8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F5Z1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5Z1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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"sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7HB96-1", "uniprot_ac": "A0A9J7HB96", "uniprot_id": "A0A9J7HB96_CRIGR", "mass": { "chemical_mass": 47270.0, "monoisotopic_mass": 47270.0 }, "refseq": { "ac": "XP_035307551", "name": "uncharacterized protein K02A2.6-like isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307551" }, "gene_names": [ { "name": "LOC113833204", "type": "recommended", "evidence": [ { "id": "A0A9J7HB96", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HB96" } ] }, { "name": "LOC113833204", "type": "synonym", "evidence": [ { "id": "XP_035307551", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307551" } ] } ], "protein_names": [ { "name": "Uncharacterized protein K02A2.6-like isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7HB96", "database": "UniProtKB", "url": 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"MTSSWQRNLNKTASKITSTCTPCAKVNTGRLKLPEGTRVRGERPWTNWEVDFTEIRPGSFGNRYLLVFIDIFSGWTEAFPTKHETAQVVVKKILEEIFPRFGLPKVIGSDNGPAFVSQVSQLVAKTLGINWKLHYAYRPQSSGQVEQANRTIKETLTKLALETGAKDWEQLLPMALFRVRNTPSVHGLTPFAILFGGPPPIIDVLPADPNHSVDSPSLQARLRALQIIQNQIWKPLAAVYQAGNPAVPHPFQIGDSVYIRCHQSKTLEPLWKGPYTVLLTTPTALMVDGIAAWVHASHAKKANTNENWVTNETPKWKLQRTQNPFKIRLLRDV", "length": 333, "header": "tr|A0A9J7KDJ6-1|A0A9J7HB96_CRIGR Computationally mapped isoform of Uncharacterized protein K02A2.6-like isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC113833204 PE=4 SV=1 CANONICAL=A0A9J7HB96-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035306346", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306346" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HAA8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAA8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Pcnt", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAA8", "locus": {} } ], "crossref": [ { "id": "100764247", "url": "https://www.ncbi.nlm.nih.gov/gene/100764247", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019528", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019528", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028745", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028745", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100764247", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764247", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HAA8", "url": "https://www.orthodb.org/?gene=A0A9J7HAA8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR44981", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44981", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR44981:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44981:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10495", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10495", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF27598", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27598", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035306346", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306346", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F7Q7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7Q7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F7Q7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7Q7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H7F4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7F4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H7F4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7F4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H882", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H882", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H882-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H882-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H991", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H991", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H991-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H991-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H9I7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9I7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H9I7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9I7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HAA8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAA8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HAA8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAA8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HAD6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAD6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HAD6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAD6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HBI1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBI1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HBI1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBI1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K2K0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2K0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K2K0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2K0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KAC6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAC6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KAC6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAC6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KDS2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDS2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KDS2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDS2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDEDEQEERRRKVEAGRAKLASFRQRKTKGDCPNSKKKTAKRKGSAVNAPVQEEGSVAPQNSELPQGGAGFESTSCSNTLEGTRGAFAAQERQDCELDEPGLQAQQQQPQPQPQPTQTAHSLELEALRLSLNNMHTAQLELTQANLQKEKETALTELREMLNGRRAQELALLQSRQQCELELMREQLAREKEEVVLRCGQETAELKEKLRSEMEKSVQMIETLKQDWESERQLCLENLRKELSAKHQSEMEGLQNQFQRELAEQRAELEKIFQAKHEAEVSLKETQHQAAVKKLQEDLQSEHCQYLQDLEMKFREKEKEKELELENLQASYEELKAQSQEEIRCLWSQLESVKTNTEELNGSWEPCLAQDSHLEELEHLRSDFAQQQQQERAQHKLELEHLRSDFVQQQQQERAQHELELEHLRVYFEKKLRDAEKTYQEDLTLFQQRLQEAREDSLESGEISSSCIFPEETSGRGRKEQPDPLDLQLEQLKENSTSLQAGLEEDPRHETGVLSSSLNFQLKENKSHSYRLRPEEAEQERLPLTLSEQHSQELAQEHLQYAQDMAMEADAQVAARILTLEAEHKDVCKVSLLQTELKEAVELLKIENRNLQEKLQHETHLKEELERVKHSLVEDHQVKLNKAEEKIQLMKQEFQKKEAEWERSHEDFKRDTEGRLTSMFIELREKAESEKQSIISRFEHRESGMRHLQEQQAAQILDLERSLMEQQGRLRQLEQELTRDEVLPCSRCGQEPLMAQDEEHIMLLRVKEDCALQLMMAQNRFLEERKEIMEKFAKEQDAFLRDTQEKHAHELQLLQQGHQQQLQALKIELETKHHSELAEQLASLESKQQALVETHVAELQVKHNAEISTLQMKHLTDLHAAKSFYLTDIETIRDEHRKALELLQAELEDQLQKKDSSHKEILTHELEKLKHEELQSAKDSLRIKIHAKHTEEAKGLATDMQGTQQQEELAMAVHNQRHLLGKDGNAALGSVGAEVLLHPAVPQELGDPHAVEMQKPQAELAKSQELPASQEQAALVVVAQAFDPCTRKAETGPISEFKLKGQVFSLSREVEECRAELERLQQRRERENQEDTTLICMLRADADLAQSKGKVLRDALRRLLGLFGETLKAAVTLKSRISERAGLLLDHVDATDTSDAQLAAAALGDMWSDEGLLEIDRTLPEGAETSSVSEISSHVCESFFMSPENTLECEQPIRKVYQSLSTAVDGLLEMALDSSKQLEEAHQLHCCVEKELRHRNEEMAQAVQKQQELLEHLRQESAAKDGLTLELHMAEGLLEGLRVEKAELQEALDKKEESEQQLILELESLQKQLQQVAQELVTLREENSVLWNQKETFTNEAKEREAALQKEVESLSRDQWEARKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLTEEVATLKQELAALDKHLRSQRQFMDEQAAEREHEREEFQQEIQRLEEQLRQAARPRPPGPRDSQCAQLDEEVELLQEKLREKLDGFNELVIKKDFADQQLLIQEKEIKRLEETNVSLQRQVAQLQEELEKQKKNMEELKCRLDEAECPKPSQDSSSRGPETQPEVTESTHLEPESEVVPSRNSEIEELKAIIENLRENQEQLQKDKAEEIEQLHEVIEKLQSELTLMGPKVHELSDHQASSLHTELSCLRAEGQHGQALWNELEAAQAAKEVFGQLLADQAHGHSQVLEALQQRLQDAEVVAAKRLAELEHCVALREAEVEGMASRIQEFEALLKAKEAIIVQRDLEIDSMNKWKATHSLELETILLPLAHFRRALEQQTLATSDEPPELQQLRIQCARLSHQLQVLHHRFLQCQMEPDQQQAPVAPADCSSPGADAQAARGQWQQDSVSMGLASAPQDNLQPAKVLVTLKDASLHKTESVMSVLEVCQRRLEAEMLLMKNAMRLDMENDREVPKGMQAKEQQLEDCQLGSGDLIIQVQQLQEKLNHLVHSMASRDTSMENPKSERPSLSENGSSSDCHNDEDISASLPIDVFSIGKTTWDVIDVIKNQDLLAQVEMPSFPTQEPLTPQGGSLSSQVSVHSDSLHPEEAEPQKDPARALDLSSWSSPEVLRKDSTPEPQHSLPLTPCTGTVSLHSVDTSSQDWTDSLQLADASGLLCYPGKSATAQAPLWVVTPSAENHHVERPATEKDVEDFIVTSFDSQELLTTSPHELTRSDATGKSDCPSGGMMLTLGSGGSETPRSSPVAAAVVPFSRRFDQSPGAMKEKEIHAKHMKALLQMVFDESHQILALSKNQDLPNSLSKGEPRDPLDGLPRDRQALLEATADRGEKEPSETCLTWSGELLRAIQEVFAREQENAELQSRPYGLDLGDYNVLFKRLEKVIKEQGDLQKVQCLPDRSSLLSEIQALRAQLRMTHLQNQEKLQQLCAALTSTEARGSQREHQLRRQVELLAYKVEQEKCIASDLQKTLNKEQEKASDVRKLLMVEQSAVQDLKSELHACKQENTRLLESLDKVQQEVLRLRAMLDGKENELKGVLQELECERGKERALQAQHEEQQLRHLQREGQSSRALEELKMSLEKQRAQNNQLCVALKHERAAKDNLQKELQIESSRCEALLAQEKGQLSELQKSLEAERSRSLELSEALQHERLLTEQLSRNMQEACARQETQIQHALLRKLKAEKARALELESMLEKVKKEAAHTQQQLESQAQERCVELRKEKEVSGSLRSAVDALQTHRQELGCCLEREREKSAWLQAELEQLSSRVKEQEGRKEARRMERRPSRTDVEKKKWQTDKEKLRELELQCQRDEHKIEQLQQMVRELKRKEKVPGGDGACRVSPRLGSLDLDHVQEQQQELEKIRQQLLCAAGLLTSFTNHTVDRTIKDWTSSNEKAVSSLMRTLEELKSELSIPASSKKKMAAELHVQLMNELLRDNDTLTKAISMATQEKAELCRTVSRLEKTLKHHMQKGCILSRQSKSSGKQDGMVPQSPLRNSDPEWHTATTSMEANTYNTKMEKLYLHYLRAESFRKALIYQKKYLLLLIGGFQDSEQETLSMIAHLGVFPSKADKKITTSRPFTKFRTAVRVVIAIQRLRFLVKKWREVDRRGALIHGKGSRQGHRMSRRQHSLSETRASLPSKEVSSGHTKDARHSLRSLAAVPLGKVERSTSSPNSRLERSLTASQDPEHSLTEYIHHLEMIQQRLGGLPADSTQKSCHQKVKQ", "length": 3190, "header": "tr|A0A9J7HAA8-1|A0A9J7HAA8_CRIGR Isoform 1 of Pericentrin isoform X12 OS=Cricetulus griseus OX=10029 GN=Pcnt PE=4 SV=1 CANONICAL=A0A9J7HAA8-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F7Q7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAA8/entry#A0A9J7F7Q7-1", "sequence": { "sequence": "MDEDEQEERRRKVEAGRAKLASFRQRKTKGDCPNSKKKTAKRKGSAVNAPVQEEGSVAPQNSELPQGGAGFESTSCSNTLEGTRGAFAAQERQDCELDEPGLQAQQQQPQPQPQPTQTAHSLELEALRLSLNNMHTAQLELTQANLQKEKETALTELREMLNGRRAQELALLQSRQQCELELMREQLAREKEEVVLRCGQETAELKEKLRSEMEKSVQMIETLKQDWESERQLCLENLRKELSAKHQSEMEGLQNQFQRELAEQRAELEKIFQAKHEAEVSLKETQHQAAVKKLQEDLQSEHCQYLQDLEMKFREKEKEKELELENLQASYEELKAQSQEEIRCLWSQLESVKTNTEELNGSWEPCLAQDSHLEELEHLRSDFAQQQQQERAQHKLELEHLRSDFVQQQQQERAQHELELEHLRVYFEKKLRDAEKTYQEDLTLFQQRLQEAREDSLESGEISSSCIFPEETSGRGRKEQPDPLDLQLEQLKENSTSLQAGLEEDPRHETGVLSSSLNFQLKENKSHSYRLRPEEAEQERLPLTLSEQHSQELAQEHLQYAQDMAMEADAQVAARILTLEAEHKDVCKVSLLQTELKEAVELLKIENRNLQEKLQHETHLKEELERVKHSLVEDHQVKLNKAEEKIQLMKQEFQKKEAEWERSHEDFKRDTEGRLTSMFIELREKAESEKQSIISRFEHRESGMRHLQEQQAAQILDLERSLMEQQGRLRQLEQELTRDEVLPCSRCGQEPLMAQDEEHIMLLRVKEDCALQLMMAQNRFLEERKEIMEKFAKEQDAFLRDTQEKHAHELQLLQQGHQQQLQALKIELETKHHSELAEQLASLESKQQALVETHVAELQVKHNAEISTLQMKHLTDLHAAKSFYLTDIETIRDEHRKALELLQAELEDQLQKKDSSHKEILTHELEKLKHEELQSAKDSLRIKIHAKHTEEAKGLATDMQGTQQQEELAMAVHNQRHLLGKDGNAALGSVGAEVLLHPAVPQELGDPHAVEMQKPQAELAKSQELPASQEQAALLKGQVFSLSREVEECRAELERLQQRRERENQEDTTLICMLRADADLAQSKGKVLRDALRRLLGLFGETLKAAVTLKSRISERAGLLLDHVDATDTSDAQLAAAALGDMWSDEGLLEIDRTLPEGAETSSVSEISSHVCESFFMSPENTLECEQPIRKVYQSLSTAVDGLLEMALDSSKQLEEAHQLHCCVEKELRHRNEEMAQAVQKQQELLEHLRQESAAKDGLTLELHMAEGLLEGLRVEKAELQEALDKKEESEQQLILELESLQKQLQQVAQELVTLREENSVLWNQKETFTNEAKEREAALQKEVESLSRDQWEARKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLTEEVATLKQELAALDKHLRSQRQFMDEQAAEREHEREEFQQEIQRLEEQLRQAARPRPPGPRDSQCAQLDEEVELLQEKLREKLDGFNELVIKKDFADQQLLIQEKEIKRLEETNVSLQRQVAQLQEELEKQKKNMEELKCRLDEAECPKPSQDSSSRGPETQPEVTESTHLEPESEVVPSRNSEIEELKAIIENLRENQEQLQKDKAEEIEQLHEVIEKLQSELTLMGPKVHELSDHQASSLHTELSCLRAEGQHGQALWNELEAAQAAKEVFGQLLADQAHGHSQVLEALQQRLQDAEVVAAKRLAELEHCVALREAEVEGMASRIQEFEALLKAKEAIIVQRDLEIDSMNKWKATHSLELETILLPLAHFRRALEQQTLATSDEPPELQQLRIQCARLSHQLQVLHHRFLQCQMEPDQQQAPVAPADCSSPGADAQAARGQWQQDSVSMGLASAPQDNLQPAKVLVTLKDASLHKTESVMSVLEVCQRRLEAEMLLMKNAMRLDMENDREVPKGMQAKEQQLEDCQLGSGDLIIQVQQLQEKLNHLVHSMASRDTSMENPKSERPSLSENGSSSDCHNDEDISASLPIDVFSIGKTTWDVIDVIKNQDLLAQVEMPSFPTQEPLTPQGGSLSSQVSVHSDSLHPEEAEPQKDPARALDLSSWSSPEVLRKDSTPEPQHSLPLTPCTGTVSLHSVDTSSQDWTDSLQLADASGLLCYPGKSATAQAPLWVVTPSAENHHVERPATEKDVEDFIVTSFDSQELLTTSPHELTRSDATGKSDCPSGGMMLTLGSGGSETPRSSPVAAAVVPFSRRFDQSPGAMKEKEIHAKHMKALLQMVFDESHQILALSKNQDLPNSLSKGEPRDPLDGLPRDRQALLEATADRGEKEPSETCLTWSGELLRAIQEVFAREQENAELQSRPYGLDLGDYNVLFKRLEKVIKEQGDLQKVQCLPDRSSLLSEIQALRAQLRMTHLQNQEKLQQLCAALTSTEARGSQREHQLRRQVELLAYKVEQEKCIASDLQKTLNKEQEKASDVRKLLMVEQSAVQDLKSELHACKQENTRLLESLDKVQQEVLRLRAMLDGKENELKGVLQELECERGKERALQAQHEEQQLRHLQREGQSSRALEELKMSLEKQRAQNNQLCVALKHERAAKDNLQKELQIESSRCEALLAQEKGQLSELQKSLEAERSRSLELSEALQHERLLTEQLSRNMQEACARQETQIQHALLRKLKAEKARALELESMLEKVKKEAAHTQQQLESQAQERCVELRKEKEVSGSLRSAVDALQTHRQELGCCLEREREKSAWLQAELEQLSSRVKEQEGRKEARRMERRPSRTDVEKKKWQTDKEKLRELELQCQRDEHKIEQLQQMVRELKRKEKVPGGDGACRVSPRLGSLDLDHVQEQQQELEKIRQQLLCAAGLLTSFTNHTVDRTIKDWTSSNEKAVSSLMRTLEELKSELSIPASSKKKMAAELHVQLMNELLRDNDTLTKAISMATQEKAELCRTVSRLEKTLKHHMQKGCILSRQSKSSGKQDGMVPQSPLRNSDPEWHTATTSMEANTYNTKMEKLYLHYLRAESFRKALIYQKKYLLLLIGGFQDSEQETLSMIAHLGVFPSKADKKITTSRPFTKFRTAVRVVIAIQRLRFLVKKWREVDRRGALIHGKGSRQGHRMSRRQHSLSETRASLPSKEVSSGHTKDARHSLRSLAAVPLGKVERSTSSPNSRLERSLTASQDPEHSLTEYIHHLEMIQQRLGGLPADSTQKSCHQKVKQ", "length": 3167, "header": "tr|A0A9J7F7Q7-1|A0A9J7HAA8_CRIGR Computationally mapped isoform of Pericentrin isoform X12 OS=Cricetulus griseus OX=10029 GN=Pcnt PE=4 SV=1 CANONICAL=A0A9J7HAA8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H7F4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAA8/entry#A0A9J7H7F4-1", "sequence": { "sequence": "MDEDEQEERRRKVEAGRAKLASFRQRKTKGDCPNSKKKTAKRKGSAVNAPVQEEGSVAPQNSELPQGGAGFESTSCSNTLEGTRGAFAAQERQDCELDEPGLQAQQQQPQPQPQPTQTAHSLELEALRLSLNNMHTAQLELTQANLQKEKETALTELREMLNGRRAQELALLQSRQQCELELMREQLAREKEEVVLRCGQETAELKEKLRSEMEKSVQMIETLKQDWESERQLCLENLRKELSAKHQSEMEGLQNQFQRELAEQRAELEKIFQAKHEAEVSLKETQHQAAVKKLQEDLQSEHCQYLQDLEMKFREKEKEKELELENLQASYEELKAQSQEEIRCLWSQLESVKTNTEELNGSWEPCLAQDSHLEELEHLRSDFAQQQQQERAQHKLELEHLRSDFVQQQQQERAQHELELEHLRVYFEKKLRDAEKTYQEDLTLFQQRLQEAREDSLESGEISSSCIFPEETSGRGRKEQPDPLDLQLEQLKENSTSLQAGLEEDPRHETELAQEHLQYAQDMAMEADAQVAARILTLEAEHKDVCKVSLLQTELKEAVELLKIENRNLQEKLQHETHLKEELERVKHSLVEDHQVKLNKAEEKIQLMKQEFQKKEAEWERSHEDFKRDTEGRLTSMFIELREKAESEKQSIISRFEHRESGMRHLQEQQAAQILDLERSLMEQQGRLRQLEQELTRDEVLPCSRCGQEPLMAQDEEHIMLLRVKEDCALQLMMAQNRFLEERKEIMEKFAKEQDAFLRDTQEKHAHELQLLQQGHQQQLQALKIELETKHHSELAEQLASLESKQQALVETHVAELQVKHNAEISTLQMKHLTDLHAAKSFYLTDIETIRDEHRKALELLQAELEDQLQKKDSSHKEILTHELEKLKHEELQSAKDSLRIKIHAKHTEEAKGLATDMQGTQQQEELAMAVHNQRHLLGKDGNAALGSVGAEVLLHPAVPQELGDPHAVEMQKPQAELAKSQELPASQEQAALVVVAQAFDPCTRKAETGPISEFKLKGQVFSLSREVEECRAELERLQQRRERENQEDTTLICMLRADADLAQSKGKVLRDALRRLLGLFGETLKAAVTLKSRISERAGLLLDHVDATDTSDAQLAAAALGDMWSDEGLLEIDRTLPEGAETSSVSEISSHVCESFFMSPENTLECEQPIRKVYQSLSTAVDGLLEMALDSSKQLEEAHQLHCCVEKELRHRNEEMAQAVQKQQELLEHLRQESAAKDGLTLELHMAEGLLEGLRVEKAELQEALDKKEESEQQLILELESLQKQLQQVAQELVTLREENSVLWNQKETFTNEAKEREAALQKEVESLSRDQWEARKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLTEEVATLKQELAALDKHLRSQRQFMDEQAAEREHEREEFQQEIQRLEEQLRQAARPRPPGPRDSQCAQLDEEVELLQEKLREKLDGFNELVIKKDFADQQLLIQEKEIKRLEETNVSLQRQVAQLQEELEKQKKNMEELKCRLDEAECPKPSQDSSSRGPETQPEVTESTHLEPESEVVPSRNSEIEELKAIIENLRENQEQLQKDKAEEIEQLHEVIEKLQSELTLMGPKVHELSDHQASSLHTELSCLRAEGQHGQALWNELEAAQAAKEVFGQLLADQAHGHSQVLEALQQRLQDAEVVAAKRLAELEHCVALREAEVEGMASRIQEFEALLKAKEAIIVQRDLEIDSMNKWKATHSLELETILLPLAHFRRALEQQTLATSDEPPELQQLRIQCARLSHQLQVLHHRFLQCQMEPDQQQAPVAPADCSSPGADAQAARGQWQQDSVSMGLASAPQDNLQPAKVLVTLKDASLHKTESVMSVLEVCQRRLEAEMLLMKNAMRLDMENDREVPKGMQAKEQQLEDCQLGSGDLIIQVQQLQEKLNHLVHSMASRDTSMENPKSERPSLSENGSSSDCHNDEDISASLPIDVFSIGKTTWDVIDVIKNQDLLAQVEMPSFPTQEPLTPQGGSLSSQVSVHSDSLHPEEAEPQKDPARALDLSSWSSPEVLRKDSTPEPQHSLPLTPCTGTVSLHSVDTSSQDWTDSLQLADASGLLCYPGKSATAQAPLWVVTPSAENHHVERPATEKDVEDFIVTSFDSQELLTTSPHELTRSDATGKSDCPSGGMMLTLGSGGSETPRSSPVAAAVVPFSRRFDQSPGAMKEKEIHAKHMKALLQMVFDESHQILALSKNQDLPNSLSKGEPRDPLDGLPRDRQALLEATADRGEKEPSETCLTWSGELLRAIQEVFAREQENAELQSRPYGLDLGDYNVLFKRLEKVIKEQGDLQKVQCLPDRSSLLSEIQALRAQLRMTHLQNQEKLQQLCAALTSTEARGSQREHQLRRQVELLAYKVEQEKCIASDLQKTLNKEQEKASDVRKLLMVEQSAVQDLKSELHACKQENTRLLESLDKVQQEVLRLRAMLDGKENELKGVLQELECERGKERALQAQHEEQQLRHLQREGQSSRALEELKMSLEKQRAQNNQLCVALKHERAAKDNLQKELQIESSRCEALLAQEKGQLSELQKSLEAERSRSLELSEALQHERLLTEQLSRNMQEACARQETQIQHALLRKLKAEKARALELESMLEKVKKEAAHTQQQLESQAQERCVELRKEKEVSGSLRSAVDALQTHRQELGCCLEREREKSAWLQAELEQLSSRVKEQEGRKEARRMERRPSRTDVEKKKWQTDKEKLRELELQCQRDEHKIEQLQQMVRELKRKEKVPGGDGACRVSPRLGSLDLDHVQEQQQELEKIRQQLLCAAGLLTSFTNHTVDRTIKDWTSSNEKAVSSLMRTLEELKSELSIPASSKKKMAAELHVQLMNELLRDNDTLTKAISMATQEKAELCRTVSRLEKTLKHHMQKGCILSRQSKSSGKQDGMVPQSPLRNSDPEWHTATTSMEANTYNTKMEKLYLHYLRAESFRKALIYQKKYLLLLIGGFQDSEQETLSMIAHLGVFPSKADKKITTSRPFTKFRTAVRVVIAIQRLRFLVKKWREVDRRGALIHGKGSRQGHRMSRRQHSLSETRASLPSKEVSSGHTKDARHSLRSLAAVPLGKVERSTSSPNSRLERSLTASQDPEHSLTEYIHHLEMIQQRLGGLPADSTQKSCHQKVKQ", "length": 3149, "header": "tr|A0A9J7H7F4-1|A0A9J7H7F4_CRIGR Computationally mapped isoform of Pericentrin isoform X17 OS=Cricetulus griseus OX=10029 GN=Pcnt PE=4 SV=1 CANONICAL=A0A9J7HAA8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H882-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAA8/entry#A0A9J7H882-1", "sequence": { "sequence": "MDEDEQEERRRKVEAGRAKLASFRQRKTKGDCPNSKKKTAKRKGSAVNAPVQEEGSVAPQNSELPQGGAGFESTSCSNTLEGTRGAFAAQERQDCELDEPGLQAQQQQPQPQPQPTQTAHSLELEALRLSLNNMHTAQLELTQANLQKEKETALTELREMLNGRRAQELALLQSRQQCELELMREQLAREKEEVVLRCGQETAELKEKLRSEMEKSVQMIETLKQDWESERQLCLENLRKELSAKHQSEMEGLQNQFQRELAEQRAELEKIFQAKHEAEVSLKETQHQAAVKKLQEDLQSEHCQYLQDLEMKFREKEKEKELELENLQASYEELKAQSQEEIRCLWSQLESVKTNTEELNGSWEPCLAQDSHLEELEHLRSDFAQQQQQERAQHKLELEHLRSDFVQQQQQERAQHELELEHLRVYFEKKLRDAEKTYQEDLTLFQQRLQEAREDSLESGEISSSCIFPEETSGRGRKEQPDPLDLQLEQLKENSTSLQAGLEEDPRHETGVLSSSLNFQLKENKSHSYRLRPEEAEQERLPLTLSEQHSQELAQEHLQYAQDMAMEADAQVAARILTLEAEHKDVCKVSLLQTELKEAVELLKIENRNLQEKLQHETHLKEELERVKHSLVEDHQVKLNKAEEKIQLMKQEFQKKEAEWERSHEDFKRDTEGRLTSMFIELREKAESEKQSIISRFEHRESGMRHLQEQQAAQILDLERSLMEQQGRLRQLEQELTRDEVLPCSRCGQEPLMAQDEEHIMLLRVKEDCALQLMMAQNRFLEERKEIMEKFAKEQDAFLRDTQEKHAHELQLLQQGHQQQLQALKIELETKHHSELAEQLASLESKQQALVETHVAELQVKHNAEISTLQMKHLTDLHAAKSFYLTDIETIRDEHRKALELLQAELEDQLQKKDSSHKEILTHELEKLKHEELQSAKDSLRIKIHAKHTEEAKGLATDMQGTQQQEELAMAVHNQRHLLGKDGNAALGSVGAEVLLHPAVPQELGDPHAVEMQKPQAELAKSQELPASQEQAALVVVAQAFDPCTRKAETGPISEFKLKGQVFSLSREVEECRAELERLQQRRERENQEDTTLICMLRADADLAQSKGKVLRDALRRLLGLFGETLKAAVTLKSRISERAGLLLDHVDATDTSDAQLAAAALGDMWSDEGLLEIDRTLPEGAETSSVSEISSHVCESFFMSPENTLECEQPIRKVYQSLSTAVDGLLEMALDSSKQLEEAHQLHCCVEKELRHRNEEMAQAVQKQQELLEHLRQESAAKDGLTLELHMAEGLLEGLRVEKAELQEALDKKEESEQQLILELESLQKQLQQVAQELVTLREENSVLWNQKETFTNEAKEREAALQKEVESLSRDQWEARKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLTEEVATLKQELAALDKHLRSQRQFMDEQAAEREHEREEFQQEIQRLEEQLRQAARPRPPGPRDSQCAQLDEEVELLQEKLREKLDGFNELVIKKDFADQQLLIQEKEIKRLEETNVSLQRQVAQLQEELEKQKKNMEELKCRLDEAECPKPSQDSSSRGPETQPEVTESTHLEPESEVVPSRNSEIEELKAIIENLRENQEQLQKDKAEEIEQLHEVIEKLQSELTLMGPKVHELSDHQASSLHTELSCLRAEGQHGQALWNELEAAQAAKEVFGQLLADQAHGHSQVLEALQQRLQDAEVVAAKRLAELEHCVALREAEVEGMASRIQEFEALLKAKEAIIVQRDLEIDSMNKWKATHSLELETILLPLAHFRRALEQQTLATSDEPPELQQLRIQCARLSHQLQVLHHRFLQCQMEPDQQQAPVAPADCSSPGADAQAARGQWQQDSVSMGLASAPQDNLQPAKVLVTLKDASLHKTESVMSVLEVCQRRLEAEMLLMKNAMRLDMENDREVPKGMQAKEQQLEDCQLGSGDLIIQVQQLQEKLNHLVHSMASRDTSMENPKSERPSLSENGSSSDCHNDEDISASLPIDVFSIGKTTWDVIDVIKNQDLLAQVEMPSFPTQEPLTPQGGSLSSQVSVHSDSLHPEEAEPQKDPARALDLSSWSSPEVLRKDSTPEPQHSLPLTPCTGTVSLHSVDTSSQDWTDSLQLADASGLLCYPGKSATAQAPLWVVTPSAENHHVERPATEKDVEDFIVTSFDSQELLTTSPHELTRSDATGKSDCPSGGMMLTLGSGGSETPRSSPVAAAVVPFSRRFDQSPGAMKEKEIHAKHMKALLQMVFDESHQILALSKNQDLPNSLSKGEPRDPLDGLPRDRQALLEATADRGEKEPSETCLTWSGELLRAIQEVFAREQENAELQSRPYGLDLGDYNVLFKRLEKVIKEQGDLQKVQCLPDRSSLLSEIQALRAQLRMTHLQNQEKLQQLCAALTSTEARGSQREHQLRRQVELLAYKVEQEKCIASDLQKTLNKEQEKASDVRKLLMVEQSAVQDLKSELHACKQENTRLLESLDKVQQEVLRLRAMLDGKENELKGVLQELECERGKERALQAQHEEQQLRHLQREGQSSRALEELKMSLEKQRAQNNQLCVALKHERAAKDNLQKELQIESSRCEALLAQEKGQLSELQKSLEAERSRSLELSEALQHERLLTEQLSRNMQEACARQETQIQHALLRKLKAEKARALELESMLEKVKKEAAHTQQQLESQAQERCVELRKEKERELELQCQRDEHKIEQLQQMVRELKRKEKVPGGDGACRVSPRLGSLDLDHVQEQQQELEKIRQQLLCAAGLLTSFTNHTVDRTIKDWTSSNEKAVSSLMRTLEELKSELSIPASSKKKMAAELHVQLMNELLRDNDTLTKAISMATQEKAELCRTVSRLEKTLKHHMQKGCILSRQSKSSGKQDGMVPQSPLRNSDPEWHTATTSMEANTYNTKMEKLYLHYLRAESFRKALIYQKKYLLLLIGGFQDSEQETLSMIAHLGVFPSKADKKITTSRPFTKFRTAVRVVIAIQRLRFLVKKWREVDRRGALIHGKGSRQGHRMSRRQHSLSETRASLPSKEVSSGHTKDARHSLRSLAAVPLGKVERSTSSPNSRLERSLTASQDPEHSLTEYIHHLEMIQQRLGGLPADSTQKSCHQKVKQ", "length": 3113, "header": "tr|A0A9J7H882-1|A0A9J7H882_CRIGR Computationally mapped isoform of Pericentrin isoform X19 OS=Cricetulus griseus OX=10029 GN=Pcnt PE=4 SV=1 CANONICAL=A0A9J7HAA8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H991-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAA8/entry#A0A9J7H991-1", "sequence": { "sequence": "MDEDEQEERRRKVEAGRAKLASFRQRKTKGDCPNSKKKTAKRKGSAVNAPVQEEGSVAPQNSELPQGGAGFESTSCSNTLEGTRGAFAAQERQDCELDEPGLQAQQQQPQPQPQPTQTAHSLELEALRLSLNNMHTAQLELTQANLQKEKETALTELREMLNGRRAQELALLQSRQQCELELMREQLAREKEEVVLRCGQETAELKEKLRSEMEKSVQMIETLKQDWESERQLCLENLRKELSAKHQSEMEGLQNQFQRELAEQRAELEKIFQAKHEAEVSLKETQHQAAVKKLQEDLQSEHCQYLQDLEMKFREKEKEKELELENLQASYEELKAQSQEEIRCLWSQLESVKTNTEELNGSWEPCLAQDSHLEELEHLRSDFAQQQQQERAQHKLELEHLRSDFVQQQQQERAQHELELEHLRVYFEKKLRDAEKTYQEDLTLFQQRLQEAREDSLESGEISSSCIFPEETSGRGRKEQPDPLDLQLEQLKVKHSLVEDHQVKLNKAEEKIQLMKQEFQKKEAEWERSHEDFKRDTEGRLTSMFIELREKAESEKQSIISRFEHRESGMRHLQEQQAAQILDLERSLMEQQGRLRQLEQELTRDEVLPCSRCGQEPLMAQDEEHIMLLRVKEDCALQLMMAQNRFLEERKEIMEKFAKEQDAFLRDTQEKHAHELQLLQQGHQQQLQALKIELETKHHSELAEQLASLESKQQALVETHVAELQVKHNAEISTLQMKHLTDLHAAKSFYLTDIETIRDEHRKALELLQAELEDQLQKKDSSHKEILTHELEKLKHEELQSAKDSLRIKIHAKHTEEAKGLATDMQGTQQEELAMAVHNQRHLLGKDGNAALGSVGAEVLLHPAVPQELGDPHAVEMQKPQAELAKSQELPASQEQAALVVVAQAFDPCTRKAETGPISEFKLKGQVFSLSREVEECRAELERLQQRRERENQEDTTLICMLRADADLAQSKGKVLRDALRRLLGLFGETLKAAVTLKSRISERAGLLLDHVDATDTSDAQLAAAALGDMWSDEGLLEIDRTLPEGAETSSVSEISSHVCESFFMSPENTLECEQPIRKVYQSLSTAVDGLLEMALDSSKQLEEAHQLHCCVEKELRHRNEEMAQAVQKQQELLEHLRQESAAKDGLTLELHMAEGLLEGLRVEKAELQEALDKKEESEQQLILELESLQKQLQQVAQELVTLREENSVLWNQKETFTNEAKEREAALQKEVESLSRDQWEARKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLTEEVATLKQELAALDKHLRSQRQFMDEQAAEREHEREEFQQEIQRLEEQLRQAARPRPPGPRDSQCAQLDEEVELLQEKLREKLDGFNELVIKKDFADQQLLIQEKEIKRLEETNVSLQRQVAQLQEELEKQKKNMEELKCRLDEAECPKPSQDSSSRGPETQPEVTESTHLEPESEVVPSRNSEIEELKAIIENLRENQEQLQKDKAEEIEQLHEVIEKLQSELTLMGPKVHELSDHQASSLHTELSCLRAEGQHGQALWNELEAAQAAKEVFGQLLADQAHGHSQVLEALQQRLQDAEVVAAKRLAELEHCVALREAEVEGMASRIQEFEALLKAKEAIIVQRDLEIDSMNKWKATHSLELETILLPLAHFRRALEQQTLATSDEPPELQQLRIQCARLSHQLQVLHHRFLQCQMEPDQQQAPVAPADCSSPGADAQAARGQWQQDSVSMGLASAPQDNLQPAKVLVTLKDASLHKTESVMSVLEVCQRRLEAEMLLMKNAMRLDMENDREVPKGMQAKEQQLEDCQLGSGDLIIQVQQLQEKLNHLVHSMASRDTSMENPKSERPSLSENGSSSDCHNDEDISASLPIDVFSIGKTTWDVIDVIKNQDLLAQVEMPSFPTQEPLTPQGGSLSSQVSVHSDSLHPEEAEPQKDPARALDLSSWSSPEVLRKDSTPEPQHSLPLTPCTGTVSLHSVDTSSQDWTDSLQLADASGLLCYPGKSATAQAPLWVVTPSAENHHVERPATEKDVEDFIVTSFDSQELLTTSPHELTRSDATGKSDCPSGGMMLTLGSGGSETPRSSPVAAAVVPFSRRFDQSPGAMKEKEIHAKHMKALLQMVFDESHQILALSKNQDLPNSLSKGEPRDPLDGLPRDRQALLEATADRGEKEPSETCLTWSGELLRAIQEVFAREQENAELQSRPYGLDLGDYNVLFKRLEKVIKEQGDLQKVQCLPDRSSLLSEIQALRAQLRMTHLQNQEKLQQLCAALTSTEARGSQREHQLRRQVELLAYKVEQEKCIASDLQKTLNKEQEKASDVRKLLMVEQSAVQDLKSELHACKQENTRLLESLDKVQQEVLRLRAMLDGKENELKGVLQELECERGKERALQAQHEEQQLRHLQREGQSSRALEELKMSLEKQRAQNNQLCVALKHERAAKDNLQKELQIESSRCEALLAQEKGQLSELQKSLEAERSRSLELSEALQHERLLTEQLSRNMQEACARQETQIQHALLRKLKAEKARALELESMLEKVKKEAAHTQQQLESQAQERCVELRKEKEVSGSLRSAVDALQTHRQELGCCLEREREKSAWLQAELEQLSSRVKEQEGRKEARRMERRPSRTDVEKKKWQTDKEKLRELELQCQRDEHKIEQLQQMVRELKRKEKVPGGDGACRVSPRLGSLDLDHVQEQQQELEKIRQQLLCAAGLLTSFTNHTVDRTIKDWTSSNEKAVSSLMRTLEELKSELSIPASSKKKMAAELHVQLMNELLRDNDTLTKAISMATQEKAELCRTVSRLEKTLKHHMQKGCILSRQSKSSGKQDGMVPQSPLRNSDPEWHTATTSMEANTYNTKMEKLYLHYLRAESFRKALIYQKKYLLLLIGGFQDSEQETLSMIAHLGVFPSKADKKITTSRPFTKFRTAVRVVIAIQRLRFLVKKWREVDRRGALIHGKGSRQGHRMSRRQHSLSETRASLPSKEVSSGHTKDARHSLRSLAAVPLGKVERSTSSPNSRLERSLTASQDPEHSLTEYIHHLEMIQQRLGGLPADSTQKSCHQKVKQ", "length": 3055, "header": "tr|A0A9J7H991-1|A0A9J7H991_CRIGR Computationally mapped isoform of Pericentrin isoform X21 OS=Cricetulus griseus OX=10029 GN=Pcnt PE=4 SV=1 CANONICAL=A0A9J7HAA8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H9I7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAA8/entry#A0A9J7H9I7-1", "sequence": { "sequence": "MDEDEQEERRRKVEAGRAKLASFRQRKTKGDCPNSKKKTAKRKGSAVNAPVQEEGSVAPQNSELPQGGAGFESTSCSNTLEGTRGAFAAQERQDCELDEPGLQAQQQQPQPQPQPTQTAHSLELEALRLSLNNMHTAQLELTQANLQKEKETALTELREMLNGRRAQELALLQSRQQCELELMREQLAREKEEVVLRCGQETAELKEKLRSEMEKSVQMIETLKQDWESERQLCLENLRKELSAKHQSEMEGLQNQFQRELAEQRAELEKIFQAKHEAEVSLKETQHQAAVKKLQEDLQSEHCQYLQDLEMKFREKEKEKELELENLQASYEELKAQSQEEIRCLWSQLESVKTNTEELNGSWEPCLAQDSHLEELEHLRSDFAQQQQQERAQHKLELEHLRSDFVQQQQQERAQHELELEHLRVYFEKKLRDAEKTYQEDLTLFQQRLQEAREDSLESGEISSSCIFPEETSGRGRKEQPDPLDLQLEQLKENSTSLQAGLEEDPRHETGVLSSSLNFQLKENKSHSYRLRPEEAEQERLPLTLSEQHSQELAQEHLQYAQDMAMEADAQVAARILTLEAEHKDVCKVSLLQTELKEAVELLKIENRNLQEKLQHETHLKEELERVKHSLVEDHQVKLNKAEEKIQLMKQEFQKKEAEWERSHEDFKRDTEGRLTSMFIELREKAESEKQSIISRFEHRESGMRHLQEQQAAQILDLERSLMEQQGRLRQLEQELTRDEVLPCSRCGQEPLMAQDEEHIMLLRVKEDCALQLMMAQNRFLEERKEIMEKFAKEQDAFLRDTQEKHAHELQLLQQGHQQQLQALKIELETKHHSELAEQLASLESKQQALVETHVAELQVKHNAEISTLQMKHLTDLHAAKSFYLTDIETIRDEHRKALELLQAELEDQLQKKDSSHKEILTHELEKLKHEELQSAKDSLRIKIHAKHTEEAKGLATDMQGTQQQEELAMAVHNQRHLLGKDGNAALGSVGAEVLLHPAVPQELGDPHAVEMQKPQAELAKSQELPASQEQAALVVVAQAFDPCTRKAETGPISEFKLKGQVFSLSREVEECRAELERLQQRRERENQEDTTLICMLRADADLAQSKGKVLRDALRRLLGLFGETLKAAVTLKSRISERAGLLLDHVDATDTSDAQLAAAALGDMWSDEGLLEIDRTLPEGAETSSVSEISSHVCESFFMSPENTLECEQPIRKVYQSLSTAVDGLLEMALDSSKQLEEAHQLHCCVEKELRHRNEEMAQAVQKQQELLEHLRQESAAKDGLTLELHMAEGLLEGLRVEKAELQEALDKKEESEQQLILELESLQKQLQQVAQELVTLREENSVLWNQKETFTNEAKEREAALQKEVESLSRDQWEARKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLTEEVATLKQELAALDKHLRSQRQFMDEQAAEREHEREEFQQEIQRLEEQLRQAARPRPPGPRDSQCAQLDEEVELLQEKLREKLDGFNELVIKKDFADQQLLIQEKEIKRLEETNVSLQRQVAQLQEELEKQKKNMEELKVVPSRNSEIEELKAIIENLRENQEQLQKDKAEEIEQLHEVIEKLQSELTLMGPKVHELSDHQASSLHTELSCLRAEGQHGQALWNELEAAQAAKEVFGQLLADQAHGHSQVLEALQQRLQDAEVVAAKRLAELEHCVALREAEVEGMASRIQEFEALLKAKEAIIVQRDLEIDSMNKWKATHSLELETILLPLAHFRRALEQQTLATSDEPPELQQLRIQCARLSHQLQVLHHRFLQCQMEPDQQQAPVAPADCSSPGADAQAARGQWQQDSVSMGLASAPQDNLQPAKVLVTLKDASLHKTESVMSVLEVCQRRLEAEMLLMKNAMRLDMENDREVPKGMQAKEQQLEDCQLGSGDLIIQVQQLQEKLNHLVHSMASRDTSMENPKSERPSLSENGSSSDCHNDEDISASLPIDVFSIGKTTWDVIDVIKNQDLLAQVEMPSFPTQEPLTPQGGSLSSQVSVHSDSLHPEEAEPQKDPARALDLSSWSSPEVLRKDSTPEPQHSLPLTPCTGTVSLHSVDTSSQDWTDSLQLADASGLLCYPGKSATAQAPLWVVTPSAENHHVERPATEKDVEDFIVTSFDSQELLTTSPHELTRSDATGKSDCPSGGMMLTLGSGGSETPRSSPVAAAVVPFSRRFDQSPGAMKEKEIHAKHMKALLQMVFDESHQILALSKNQDLPNSLSKGEPRDPLDGLPRDRQALLEATADRGEKEPSETCLTWSGELLRAIQEVFAREQENAELQSRPYGLDLGDYNVLFKRLEKVIKEQGDLQKVQCLPDRSSLLSEIQALRAQLRMTHLQNQEKLQQLCAALTSTEARGSQREHQLRRQVELLAYKVEQEKCIASDLQKTLNKEQEKASDVRKLLMVEQSAVQDLKSELHACKQENTRLLESLDKVQQEVLRLRAMLDGKENELKGVLQELECERGKERALQAQHEEQQLRHLQREGQSSRALEELKMSLEKQRAQNNQLCVALKHERAAKDNLQKELQIESSRCEALLAQEKGQLSELQKSLEAERSRSLELSEALQHERLLTEQLSRNMQEACARQETQIQHALLRKLKAEKARALELESMLEKVKKEAAHTQQQLESQAQERCVELRKEKEVSGSLRSAVDALQTHRQELGCCLEREREKSAWLQAELEQLSSRVKEQEGRKEARRMERRPSRTDVEKKKWQTDKEKLRELELQCQRDEHKIEQLQQMVRELKRKEKVPGGDGACRVSPRLGSLDLDHVQEQQQELEKIRQQLLCAAGLLTSFTNHTVDRTIKDWTSSNEKAVSSLMRTLEELKSELSIPASSKKKMAAELHVQLMNELLRDNDTLTKAISMATQEKAELCRTVSRLEKTLKHHMQKGCILSRQSKSSGKQDGMVPQSPLRNSDPEWHTATTSMEANTYNTKMEKLYLHYLRAESFRKALIYQKKYLLLLIGGFQDSEQETLSMIAHLGVFPSKADKKITTSRPFTKFRTAVRVVIAIQRLRFLVKKWREVDRRGALIHGKGSRQGHRMSRRQHSLSETRASLPSKEVSSGHTKDARHSLRSLAAVPLGKVERSTSSPNSRLERSLTASQDPEHSLTEYIHHLEMIQQRLGGLPADSTQKSCHQKVKQ", "length": 3153, "header": "tr|A0A9J7H9I7-1|A0A9J7H9I7_CRIGR Computationally mapped isoform of Pericentrin isoform X16 OS=Cricetulus griseus OX=10029 GN=Pcnt PE=4 SV=1 CANONICAL=A0A9J7HAA8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HAA8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAA8/entry#A0A9J7HAA8-1", "sequence": { "sequence": "MDEDEQEERRRKVEAGRAKLASFRQRKTKGDCPNSKKKTAKRKGSAVNAPVQEEGSVAPQNSELPQGGAGFESTSCSNTLEGTRGAFAAQERQDCELDEPGLQAQQQQPQPQPQPTQTAHSLELEALRLSLNNMHTAQLELTQANLQKEKETALTELREMLNGRRAQELALLQSRQQCELELMREQLAREKEEVVLRCGQETAELKEKLRSEMEKSVQMIETLKQDWESERQLCLENLRKELSAKHQSEMEGLQNQFQRELAEQRAELEKIFQAKHEAEVSLKETQHQAAVKKLQEDLQSEHCQYLQDLEMKFREKEKEKELELENLQASYEELKAQSQEEIRCLWSQLESVKTNTEELNGSWEPCLAQDSHLEELEHLRSDFAQQQQQERAQHKLELEHLRSDFVQQQQQERAQHELELEHLRVYFEKKLRDAEKTYQEDLTLFQQRLQEAREDSLESGEISSSCIFPEETSGRGRKEQPDPLDLQLEQLKENSTSLQAGLEEDPRHETGVLSSSLNFQLKENKSHSYRLRPEEAEQERLPLTLSEQHSQELAQEHLQYAQDMAMEADAQVAARILTLEAEHKDVCKVSLLQTELKEAVELLKIENRNLQEKLQHETHLKEELERVKHSLVEDHQVKLNKAEEKIQLMKQEFQKKEAEWERSHEDFKRDTEGRLTSMFIELREKAESEKQSIISRFEHRESGMRHLQEQQAAQILDLERSLMEQQGRLRQLEQELTRDEVLPCSRCGQEPLMAQDEEHIMLLRVKEDCALQLMMAQNRFLEERKEIMEKFAKEQDAFLRDTQEKHAHELQLLQQGHQQQLQALKIELETKHHSELAEQLASLESKQQALVETHVAELQVKHNAEISTLQMKHLTDLHAAKSFYLTDIETIRDEHRKALELLQAELEDQLQKKDSSHKEILTHELEKLKHEELQSAKDSLRIKIHAKHTEEAKGLATDMQGTQQQEELAMAVHNQRHLLGKDGNAALGSVGAEVLLHPAVPQELGDPHAVEMQKPQAELAKSQELPASQEQAALVVVAQAFDPCTRKAETGPISEFKLKGQVFSLSREVEECRAELERLQQRRERENQEDTTLICMLRADADLAQSKGKVLRDALRRLLGLFGETLKAAVTLKSRISERAGLLLDHVDATDTSDAQLAAAALGDMWSDEGLLEIDRTLPEGAETSSVSEISSHVCESFFMSPENTLECEQPIRKVYQSLSTAVDGLLEMALDSSKQLEEAHQLHCCVEKELRHRNEEMAQAVQKQQELLEHLRQESAAKDGLTLELHMAEGLLEGLRVEKAELQEALDKKEESEQQLILELESLQKQLQQVAQELVTLREENSVLWNQKETFTNEAKEREAALQKEVESLSRDQWEARKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLTEEVATLKQELAALDKHLRSQRQFMDEQAAEREHEREEFQQEIQRLEEQLRQAARPRPPGPRDSQCAQLDEEVELLQEKLREKLDGFNELVIKKDFADQQLLIQEKEIKRLEETNVSLQRQVAQLQEELEKQKKNMEELKCRLDEAECPKPSQDSSSRGPETQPEVTESTHLEPESEVVPSRNSEIEELKAIIENLRENQEQLQKDKAEEIEQLHEVIEKLQSELTLMGPKVHELSDHQASSLHTELSCLRAEGQHGQALWNELEAAQAAKEVFGQLLADQAHGHSQVLEALQQRLQDAEVVAAKRLAELEHCVALREAEVEGMASRIQEFEALLKAKEAIIVQRDLEIDSMNKWKATHSLELETILLPLAHFRRALEQQTLATSDEPPELQQLRIQCARLSHQLQVLHHRFLQCQMEPDQQQAPVAPADCSSPGADAQAARGQWQQDSVSMGLASAPQDNLQPAKVLVTLKDASLHKTESVMSVLEVCQRRLEAEMLLMKNAMRLDMENDREVPKGMQAKEQQLEDCQLGSGDLIIQVQQLQEKLNHLVHSMASRDTSMENPKSERPSLSENGSSSDCHNDEDISASLPIDVFSIGKTTWDVIDVIKNQDLLAQVEMPSFPTQEPLTPQGGSLSSQVSVHSDSLHPEEAEPQKDPARALDLSSWSSPEVLRKDSTPEPQHSLPLTPCTGTVSLHSVDTSSQDWTDSLQLADASGLLCYPGKSATAQAPLWVVTPSAENHHVERPATEKDVEDFIVTSFDSQELLTTSPHELTRSDATGKSDCPSGGMMLTLGSGGSETPRSSPVAAAVVPFSRRFDQSPGAMKEKEIHAKHMKALLQMVFDESHQILALSKNQDLPNSLSKGEPRDPLDGLPRDRQALLEATADRGEKEPSETCLTWSGELLRAIQEVFAREQENAELQSRPYGLDLGDYNVLFKRLEKVIKEQGDLQKVQCLPDRSSLLSEIQALRAQLRMTHLQNQEKLQQLCAALTSTEARGSQREHQLRRQVELLAYKVEQEKCIASDLQKTLNKEQEKASDVRKLLMVEQSAVQDLKSELHACKQENTRLLESLDKVQQEVLRLRAMLDGKENELKGVLQELECERGKERALQAQHEEQQLRHLQREGQSSRALEELKMSLEKQRAQNNQLCVALKHERAAKDNLQKELQIESSRCEALLAQEKGQLSELQKSLEAERSRSLELSEALQHERLLTEQLSRNMQEACARQETQIQHALLRKLKAEKARALELESMLEKVKKEAAHTQQQLESQAQERCVELRKEKEVSGSLRSAVDALQTHRQELGCCLEREREKSAWLQAELEQLSSRVKEQEGRKEARRMERRPSRTDVEKKKWQTDKEKLRELELQCQRDEHKIEQLQQMVRELKRKEKVPGGDGACRVSPRLGSLDLDHVQEQQQELEKIRQQLLCAAGLLTSFTNHTVDRTIKDWTSSNEKAVSSLMRTLEELKSELSIPASSKKKMAAELHVQLMNELLRDNDTLTKAISMATQEKAELCRTVSRLEKTLKHHMQKGCILSRQSKSSGKQDGMVPQSPLRNSDPEWHTATTSMEANTYNTKMEKLYLHYLRAESFRKALIYQKKYLLLLIGGFQDSEQETLSMIAHLGVFPSKADKKITTSRPFTKFRTAVRVVIAIQRLRFLVKKWREVDRRGALIHGKGSRQGHRMSRRQHSLSETRASLPSKEVSSGHTKDARHSLRSLAAVPLGKVERSTSSPNSRLERSLTASQDPEHSLTEYIHHLEMIQQRLGGLPADSTQKSCHQKVKQ", "length": 3190, "header": "tr|A0A9J7HAA8-1|A0A9J7HAA8_CRIGR Isoform 1 of Pericentrin isoform X12 OS=Cricetulus griseus OX=10029 GN=Pcnt PE=4 SV=1 CANONICAL=A0A9J7HAA8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HAD6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAA8/entry#A0A9J7HAD6-1", "sequence": { "sequence": "MDEDEQEERRRKVEAGRAKLASFRQRKTKGDCPNSKKKTAKRKGSAVNAPVQEEGSVAPQNSELPQGGAGFESTSCSNTLEGTRGAFAAQERQDCELDEPGLQAQQQQPQPQPQPTQTAHSLELEALRLSLNNMHTAQLELTQANLQKEKETALTELREMLNGRRAQELALLQSRQQCELELMREQLAREKEEVVLRCGQETAELKEKLRSEMEKSVQMIETLKQDWESERQLCLENLRKELSAKHQSEMEGLQNQFQRELAEQRAELEKIFQAKHEAEVSLKETQHQAAVKKLQEDLQSEHCQYLQDLEMKFREKEKEKELELENLQASYEELKAQSQEEIRCLWSQLESVKTNTEELNGSWEPCLAQDSHLEELEHLRSDFAQQQQQERAQHKLELEHLRSDFVQQQQQERAQHELELEHLRVYFEKKLRDAEKTYQEDLTLFQQRLQEAREDSLESGEISSSCIFPEETSGRGRKEQPDPLDLQLEQLKENSTSLQAGLEEDPRHETGVLSSSLNFQLKENKSHSYRLRPEEAEQERLPLTLSEQHSQELAQEHLQYAQDMAMEADAQVAARILTLEAEHKDVCKVSLLQTELKEAVELLKIENRNLQEKLQHETHLKEELERVKHSLVEDHQVKLNKAEEKIQLMKQEFQKKEAEWERSHEDFKRDTEGRLTSMFIELREKAESEKQSIISRFEHRESGMRHLQEQQAAQILDLERSLMEQQGRLRQLEQELTRDEVLPCSRCGQEPLMAQDEEHIMLLRVKEDCALQLMMAQNRFLEERKEIMEKFAKEQDAFLRDTQEKHAHELQLLQQGHQQQLQALKIELETKHHSELAEQLASLESKQQALVETHVAELQVKHNAEISTLQMKHLTDLHAAKSFYLTDIETIRDEHRKALELLQAELEDQLQKKDSSHKEILTHELEKLKHEELQSAKDSLRIKIHAKHTEEAKGLATDMQGTQQQEELAMAVHNQRHLLGKDGNAALGSVGAEVLLHPAVPQELGDPHAVEMQKPQAELAKSQELPASQEQAALVVVAQAFDPCTRKAETGPISEFKLKGQVFSLSREVEECRAELERLQQRRERENQEDTTLICMLRADADLAQSKGKVLRDALRRLLGLFGETLKAAVTLKSRISERAGLLLDHVDATDTSDAQLAAAALGDMWSDEGLLEIDRTLPEGAETSSVSEISSHVCESFFMSPENTLECEQPIRKVYQSLSTAVDGLLEMALDSSKQLEEAHQLHCCVEKELRHRNEEMAQAVQKQQELLEHLRQESAAKDGLTLELHMAEGLLEGLRVEKAELQEALDKKEESEQQLILELESLQKQLQQVAQELVTLREENSVLWNQKETFTNEAKEREAALQKEVESLSRDQWEARKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLTEEVATLKQELAALDKHLRSQRQFMDEQAAEREHEREEFQQEIQRLEEQLRQAARPRPPGPRDSQVELLQEKLREKLDGFNELVIKKDFADQQLLIQEKEIKRLEETNVSLQRQVAQLQEELEKQKKNMEELKCRLDEAECPKPSQDSSSRGPETQPEVTESTHLEPESEVVPSRNSEIEELKAIIENLRENQEQLQKDKAEEIEQLHEVIEKLQSELTLMGPKVHELSDHQASSLHTELSCLRAEGQHGQALWNELEAAQAAKEVFGQLLADQAHGHSQVLEALQQRLQDAEVVAAKRLAELEHCVALREAEVEGMASRIQEFEALLKAKEAIIVQRDLEIDSMNKWKATHSLELETILLPLAHFRRALEQQTLATSDEPPELQQLRIQCARLSHQLQVLHHRFLQCQMEPDQQQAPVAPADCSSPGADAQAARGQWQQDSVSMGLASAPQDNLQPAKVLVTLKDASLHKTESVMSVLEVCQRRLEAEMLLMKNAMRLDMENDREVPKGMQAKEQQLEDCQLGSGDLIIQVQQLQEKLNHLVHSMASRDTSMENPKSERPSLSENGSSSDCHNDEDISASLPIDVFSIGKTTWDVIDVIKNQDLLAQVEMPSFPTQEPLTPQGGSLSSQVSVHSDSLHPEEAEPQKDPARALDLSSWSSPEVLRKDSTPEPQHSLPLTPCTGTVSLHSVDTSSQDWTDSLQLADASGLLCYPGKSATAQAPLWVVTPSAENHHVERPATEKDVEDFIVTSFDSQELLTTSPHELTRSDATGKSDCPSGGMMLTLGSGGSETPRSSPVAAAVVPFSRRFDQSPGAMKEKEIHAKHMKALLQMVFDESHQILALSKNQDLPNSLSKGEPRDPLDGLPRDRQALLEATADRGEKEPSETCLTWSGELLRAIQEVFAREQENAELQSRPYGLDLGDYNVLFKRLEKVIKEQGDLQKVQCLPDRSSLLSEIQALRAQLRMTHLQNQEKLQQLCAALTSTEARGSQREHQLRRQVELLAYKVEQEKCIASDLQKTLNKEQEKASDVRKLLMVEQSAVQDLKSELHACKQENTRLLESLDKVQQEVLRLRAMLDGKENELKGVLQELECERGKERALQAQHEEQQLRHLQREGQSSRALEELKMSLEKQRAQNNQLCVALKHERAAKDNLQKELQIESSRCEALLAQEKGQLSELQKSLEAERSRSLELSEALQHERLLTEQLSRNMQEACARQETQIQHALLRKLKAEKARALELESMLEKVKKEAAHTQQQLESQAQERCVELRKEKEVSGSLRSAVDALQTHRQELGCCLEREREKSAWLQAELEQLSSRVKEQEGRKEARRMERRPSRTDVEKKKWQTDKEKLRELELQCQRDEHKIEQLQQMVRELKRKEKVPGGDGACRVSPRLGSLDLDHVQEQQQELEKIRQQLLCAAGLLTSFTNHTVDRTIKDWTSSNEKAVSSLMRTLEELKSELSIPASSKKKMAAELHVQLMNELLRDNDTLTKAISMATQEKAELCRTVSRLEKTLKHHMQKGCILSRQSKSSGKQDGMVPQSPLRNSDPEWHTATTSMEANTYNTKMEKLYLHYLRAESFRKALIYQKKYLLLLIGGFQDSEQETLSMIAHLGVFPSKADKKITTSRPFTKFRTAVRVVIAIQRLRFLVKKWREVDRRGALIHGKGSRQGHRMSRRQHSLSETRASLPSKEVSSGHTKDARHSLRSLAAVPLGKVERSTSSPNSRLERSLTASQDPEHSLTEYIHHLEMIQQRLGGLPADSTQKSCHQKVKQ", "length": 3183, "header": "tr|A0A9J7HAD6-1|A0A9J7HAD6_CRIGR Computationally mapped isoform of Pericentrin isoform X14 OS=Cricetulus griseus OX=10029 GN=Pcnt PE=4 SV=1 CANONICAL=A0A9J7HAA8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HBI1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAA8/entry#A0A9J7HBI1-1", "sequence": { "sequence": "MDEDEQEERRRKVEAGRAKLASFRQRKTKGDCPNSKKKTAKRKGSAVNAPVQEEGSVAPQNSELPQGGAGFESTSCSNTLEGTRGAFAAQERQDCELDEPGLQAQQQQPQPQPQPTQTAHSLELEALRLSLNNMHTAQLELTQANLQKEKETALTELREMLNGRRAQELALLQSRQQCELELMREQLAREKEEVVLRCGQETAELKEKLRSEMEKSVQMIETLKQDWESERQLCLENLRKELSAKHQSEMEGLQNQFQRELAEQRAELEKIFQAKHEAEVSLKETQHQAAVKKLQEDLQSEHCQYLQDLEMKFREKEKEKELELENLQASYEELKAQSQEEIRCLWSQLESVKTNTEELNGSWEPCLAQDSHLEELEHLRSDFAQQQQQERAQHKLELEHLRSDFVQQQQQERAQHELELEHLRVYFEKKLRDAEKTYQEDLTLFQQRLQEAREDSLESGEISSSCIFPEETSGRGRKEQPDPLDLQLEQLKENSTSLQAGLEEDPRHETGVLSSSLNFQLKENKSHSYRLRPEEAEQERLPLTLSEQHSQELAQEHLQYAQDMAMEADAQVAARILTLEAEHKDVCKVSLLQTELKEAVELLKIENRNLQEKLQHETHLKEELERVKHSLVEDHQVKLNKAEEKIQLMKQEFQKKEAEWERSHEDFKRDTEGRLTSMFIELREKAESEKQSIISRFEHRESGMRHLQEQQAAQILDLERSLMEQQGRLRQLEQELTRDEVLPCSRCGQEPLMAQDEEHIMLLRVKEDCALQLMMAQNRFLEERKEIMEKFAKEQDAFLRDTQEKHAHELQLLQQGHQQQLQALKIELETKHHSELAEQLASLESKQQALVETHVAELQVKHNAEISTLQMKHLTDLHAAKSFYLTDIETIRDEHRKALELLQAELEDQLQKKDSSHKEILTHELEKLKHEELQSAKDSLRIKIHAKHTEEAKGLATDMQGTQQQEELAMAVHNQRHLLGKDGNAALGSVGAEVLLHPAVPQELGDPHAVEMQKPQAELAKSQELPASQEQAALVVVAQAFDPCTRKAETGPISEFKLKGQVFSLSREVEECRAELERLQQRRERENQEDTTLICMLRADADLAQSKGKVLRDALRRLLGLFGETLKAAVTLKSRISERAGLLLDHVDATDTSDAQLAAAALGDMWSDEGLLEIDRTLPEGAETSSVSEISSHVCESFFMSPENTLECEQPIRKVYQSLSTAVDGLLEMALDSSKQLEEAHQLHCCVEKELRHRNEEMAQAVQKQQELLEHLRQESAAKDGLTLELHMAEGLLEGLRVEKAELQEALDKKEESEQQLILELESLQKQLQQVAQELVTLREENSVLWNQKETFTNEAKEREAALQKEVESLSRDQWEARKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLTEEVATLKQELAALDKHLRSQRQFMDEQAAEREHEREEFQQEIQRLEEQLRQAARPRPPGPRDSQCAQLDEEVELLQEKLREKLDGFNELVIKKDFADQQLLIQEKEIKRLEETNVSLQRQVAQLQEELEKQKKNMEELKCRLDEAECPKPSQDSSSRGPETQPEVTESTHLEPESEVVPSRNSEIEELKAIIENLRENQEQLQKDKAEEIEQLHEVIEKLQSELTLMGPKVHELSDHQASSLHTELSCLRAEGQHGQALWNELEAAQAAKEVFGQLLADQAHGHSQVLEALQQRLQDAEVVAAKRLAELEHCVALREAEVEGMASRIQEFEALLKAKEAIIVQRDLEIDSMNKWKATHSLELETILLPLAHFRRALEQQTLATSDEPPELQQLRIQCARLSHQLQVLHHRFLQCQMEPDQQQAPVAPADCSSPGADAQAARGQWQQDSVSMGLASAPQAKEQQLEDCQLGSGDLIIQVQQLQEKLNHLVHSMASRDTSMENPKSERPSLSENGSSSDCHNDEDISASLPIDVFSIGKTTWDVIDVIKNQDLLAQVEMPSFPTQEPLTPQGGSLSSQVSVHSDSLHPEEAEPQKDPARALDLSSWSSPEVLRKDSTPEPQHSLPLTPCTGTVSLHSVDTSSQDWTDSLQLADASGLLCYPGKSATAQAPLWVVTPSAENHHVERPATEKDVEDFIVTSFDSQELLTTSPHELTRSDATGKSDCPSGGMMLTLGSGGSETPRSSPVAAAVVPFSRRFDQSPGAMKEKEIHAKHMKALLQMVFDESHQILALSKNQDLPNSLSKGEPRDPLDGLPRDRQALLEATADRGEKEPSETCLTWSGELLRAIQEVFAREQENAELQSRPYGLDLGDYNVLFKRLEKVIKEQGDLQKVQCLPDRSSLLSEIQALRAQLRMTHLQNQEKLQQLCAALTSTEARGSQREHQLRRQVELLAYKVEQEKCIASDLQKTLNKEQEKASDVRKLLMVEQSAVQDLKSELHACKQENTRLLESLDKVQQEVLRLRAMLDGKENELKGVLQELECERGKERALQAQHEEQQLRHLQREGQSSRALEELKMSLEKQRAQNNQLCVALKHERAAKDNLQKELQIESSRCEALLAQEKGQLSELQKSLEAERSRSLELSEALQHERLLTEQLSRNMQEACARQETQIQHALLRKLKAEKARALELESMLEKVKKEAAHTQQQLESQAQERCVELRKEKEVSGSLRSAVDALQTHRQELGCCLEREREKSAWLQAELEQLSSRVKEQEGRKEARRMERRPSRTDVEKKKWQTDKEKLRELELQCQRDEHKIEQLQQMVRELKRKEKVPGGDGACRVSPRLGSLDLDHVQEQQQELEKIRQQLLCAAGLLTSFTNHTVDRTIKDWTSSNEKAVSSLMRTLEELKSELSIPASSKKKMAAELHVQLMNELLRDNDTLTKAISMATQEKAELCRTVSRLEKTLKHHMQKGCILSRQSKSSGKQDGMVPQSPLRNSDPEWHTATTSMEANTYNTKMEKLYLHYLRAESFRKALIYQKKYLLLLIGGFQDSEQETLSMIAHLGVFPSKADKKITTSRPFTKFRTAVRVVIAIQRLRFLVKKWREVDRRGALIHGKGSRQGHRMSRRQHSLSETRASLPSKEVSSGHTKDARHSLRSLAAVPLGKVERSTSSPNSRLERSLTASQDPEHSLTEYIHHLEMIQQRLGGLPADSTQKSCHQKVKQ", "length": 3130, "header": "tr|A0A9J7HBI1-1|A0A9J7HBI1_CRIGR Computationally mapped isoform of Pericentrin isoform X18 OS=Cricetulus griseus OX=10029 GN=Pcnt PE=4 SV=1 CANONICAL=A0A9J7HAA8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K2K0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAA8/entry#A0A9J7K2K0-1", "sequence": { "sequence": "MDEDEQEERRRKVEAGRAKLASFRQRKTKGDCPNSKKKTAKRKGSAVNAPVQEEGSVAPQNSELPQGGAGFESTSCSNTLEGTRGAFAAQERQDCELDEPGLQAQQQQPQPQPQPTQTAHSLELEALRLSLNNMHTAQLELTQANLQKEKETALTELREMLNGRRAQELALLQSRQQCELELMREQLAREKEEVVLRCGQETAELKEKLRSEMEKSVQMIETLKQDWESERQLCLENLRKELSAKHQSEMEGLQNQFQRELAEQRAELEKIFQAKHEAEVSLKETQHQAAVKKLQEDLQSEHCQYLQDLEMKFREKEKEKELELENLQASYEELKAQSQEEIRCLWSQLESVKTNTEELNGSWEPCLAQDSHLEELEHLRSDFAQQQQQERAQHKLELEHLRSDFVQQQQQERAQHELELEHLRVYFEKKLRDAEKTYQEDLTLFQQRLQEAREDSLESGEISSSCIFPEETSGRGRKEQPDPLDLQLEQLKVKHSLVEDHQVKLNKAEEKIQLMKQEFQKKEAEWERSHEDFKRDTEGRLTSMFIELREKAESEKQSIISRFEHRESGMRHLQEQQAAQILDLERSLMEQQGRLRQLEQELTRDEVLPCSRCGQEPLMAQDEEHIMLLRVKEDCALQLMMAQNRFLEERKEIMEKFAKEQDAFLRDTQEKHAHELQLLQQGHQQQLQALKIELETKHHSELAEQLASLESKQQALVETHVAELQVKHNAEISTLQMKHLTDLHAAKSFYLTDIETIRDEHRKALELLQAELEDQLQKKDSSHKEILTHELEKLKHEELQSAKDSLRIKIHAKHTEEAKGLATDMQGTQQEELAMAVHNQRHLLGKDGNAALGSVGAEVLLHPAVPQELGDPHAVEMQKPQAELAKSQELPASQEQAALVVVAQAFDPCTRKAETGPISEFKLKGQVFSLSREVEECRAELERLQQRRERENQEDTTLICMLRADADLAQSKGKVLRDALRRLLGLFGETLKAAVTLKSRISERAGLLLDHVDATDTSDAQLAAAALGDMWSDEGLLEIDRTLPEGAETSSVSEISSHVCESFFMSPENTLECEQPIRKVYQSLSTAVDGLLEMALDSSKQLEEAHQLHCCVEKELRHRNEEMAQAVQKQQELLEHLRQESAAKDGLTLELHMAEGLLEGLRVEKAELQEALDKKEESEQQLILELESLQKQLQQVAQELVTLREENSVLWNQKETFTNEAKEREAALQKEVESLSRDQWEARKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLTEEVATLKQELAALDKHLRSQRQFMDEQAAEREHEREEFQQEIQRLEEQLRQAARPRPPGPRDSQCAQLDEEVELLQEKLREKLDGFNELVIKKDFADQQLLIQEKEIKRLEETNVSLQRQVAQLQEELEKQKKNMEELKCRLDEAECPKPSQDSSSRGPETQPEVTESTHLEPESEVVPSRNSEIEELKAIIENLRENQEQLQKDKAEEIEQLHEVIEKLQSELTLMGPKVHELSDHQASSLHTELSCLRAEGQHGQALWNELEAAQAAKEVFGQLLADQAHGHSQVLEALQQRLQDAEVVAAKRLAELEHCVALREAEVEGMASRIQEFEALLKAKEAIIVQRDLEIDSMNKWKATHSLELETILLPLAHFRRALEQQTLATSDEPPELQQLRIQCARLSHQLQVLHHRFLQCQMEPDQQQAPVAPADCSSPGADAQAARGQWQQDSVSMGLASAPQDNLQPAKVLVTLKDASLHKTESVMSVLEVCQRRLEAEMLLMKNAMRLDMENDREVPKGMQAKEQQLEDCQLGSGDLIIQVQQLQEKLNHLVHSMASRDTSMENPKSERPSLSENGSSSDCHNDEDISASLPIDVFSIGKTTWDVIDVIKNQDLLAQVEMPSFPTQEPLTPQGGSLSSQVSVHSDSLHPEEAEPQKDPARALDLSSWSSPEVLRKDSTPEPQHSLPLTPCTGTVSLHSVDTSSQDWTDSLQLADASGLLCYPGKSATAQAPLWVVTPSAENHHVERPATEKDVEDFIVTSFDSQELLTTSPHELTRSDATGKSDCPSGGMMLTLGSGGSETPRSSPVAAAVVPFSRRFDQSPGAMKEKEIHAKHMKALLQMVFDESHQILALSKNQDLPNSLSKGEPRDPLDGLPRDRQALLEATADRGEKEPSETCLTWSGELLRAIQEVFAREQENAELQSRPYGLDLGDYNVLFKRLEKVIKEQGDLQKVQCLPDRSSLLSEIQALRAQLRMTHLQNQEKLQQLCAALTSTEARGSQREHQLRRQVELLAYKVEQEKCIASDLQKTLNKEQEKASDVRKLLMVEQSAVQDLKSELHACKQENTRLLESLDKVQQEVLRLRAMLDGKENELKGVLQELECERGKERALQAQHEEQQLRHLQREGQSSRALEELKMSLEKQRAQNNQLCVALKHERAAKDNLQKELQIESSRCEALLAQEKGQLSELQKSLEAERSRSLELSEALQHERLLTEQLSRNMQEACARQETQIQHALLRKLKAEKARALELESMLEKVKKEAAHTQQQLESQAQERCVELRKEKERELELQCQRDEHKIEQLQQMVRELKRKEKVPGGDGACRVSPRLGSLDLDHVQEQQQELEKIRQQLLCAAGLLTSFTNHTVDRTIKDWTSSNEKAVSSLMRTLEELKSELSIPASSKKKMAAELHVQLMNELLRDNDTLTKAISMATQEKAELCRTVSRLEKTLKHHMQKGCILSRQSKSSGKQDGMVPQSPLRNSDPEWHTATTSMEANTYNTKMEKLYLHYLRAESFRKALIYQKKYLLLLIGGFQDSEQETLSMIAHLGVFPSKADKKITTSRPFTKFRTAVRVVIAIQRLRFLVKKWREVDRRGALIHGKGSRQGHRMSRRQHSLSETRASLPSKEVSSGHTKDARHSLRSLAAVPLGKVERSTSSPNSRLERSLTASQDPEHSLTEYIHHLEMIQQRLGGLPADSTQKSCHQKVKQ", "length": 2978, "header": "tr|A0A9J7K2K0-1|A0A9J7HAA8_CRIGR Computationally mapped isoform of Pericentrin isoform X12 OS=Cricetulus griseus OX=10029 GN=Pcnt PE=4 SV=1 CANONICAL=A0A9J7HAA8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KAC6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAA8/entry#A0A9J7KAC6-1", "sequence": { "sequence": "MDEDEQEERRRKVEAGRAKLASFRQRKTKGDCPNSKKKTAKRKGSAVNAPVQEEGSVAPQNSELPQGGAGFESTSCSNTLEGTRGAFAAQERQDCELDEPGLQAQQQQPQPQPQPTQTAHSLELEALRLSLNNMHTAQLELTQANLQKEKETALTELREMLNGRRAQELALLQSRQQCELELMREQLAREKEEVVLRCGQETAELKEKLRSEMEKSVQMIETLKQDWESERQLCLENLRKELSAKHQSEMEGLQNQFQRELAEQRAELEKIFQAKHEAEVSLKETQHQAAVKKLQEDLQSEHCQYLQDLEMKFREKEKEKELELENLQASYEELKAQSQEEIRCLWSQLESVKTNTEELNGSWEPCLAQDSHLEELEHLRSDFAQQQQQERAQHKLELEHLRSDFVQQQQQERAQHELELEHLRVYFEKKLRDAEKTYQEDLTLFQQRLQEAREDSLESGEISSSCIFPEETSGRGRKEQPDPLDLQLEQLKVKHSLVEDHQVKLNKAEEKIQLMKQEFQKKEAEWERSHEDFKRDTEGRLTSMFIELREKAESEKQSIISRFEHRESGMRHLQEQQAAQILDLERSLMEQQGRLRQLEQELTRDEVLPCSRCGQEPLMAQDEEHIMLLRVKEDCALQLMMAQNRFLEERKEIMEKFAKEQDAFLRDTQEKHAHELQLLQQGHQQQLQALKIELETKHHSELAEQLASLESKQQALVETHVAELQVKHNAEISTLQMKHLTDLHAAKSFYLTDIETIRDEHRKALELLQAELEDQLQKKDSSHKEILTHELEKLKHEELQSAKDSLRIKIHAKHTEEAKGLATDMQGTQQQEELAMAVHNQRHLLGKDGNAALGSVGAEVLLHPAVPQELGDPHAVEMQKPQAELAKSQELPASQEQAALVVVAQAFDPCTRKAETGPISEFKLKGQVFSLSREVEECRAELERLQQRRERENQEDTTLICMLRADADLAQSKGKVLRDALRRLLGLFGETLKAAVTLKSRISERAGLLLDHVDATDTSDAQLAAAALGDMWSDEGLLEIDRTLPEGAETSSVSEISSHVCESFFMSPENTLECEQPIRKVYQSLSTAVDGLLEMALDSSKQLEEAHQLHCCVEKELRHRNEEMAQAVQKQQELLEHLRQESAAKDGLTLELHMAEGLLEGLRVEKAELQEALDKKEESEQQLILELESLQKQLQQVAQELVTLREENSVLWNQKETFTNEAKEREAALQKEVESLSRDQWEARKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLTEEVATLKQELAALDKHLRSQRQFMDEQAAEREHEREEFQQEIQRLEEQLRQAARPRPPGPRDSQCAQLDEEVELLQEKLREKLDGFNELVIKKDFADQQLLIQEKEIKRLEETNVSLQRQVAQLQEELEKQKKNMEELKCRLDEAECPKPSQDSSSRGPETQPEVTESTHLEPESEVVPSRNSEIEELKAIIENLRENQEQLQKDKAEEIEQLHEVIEKLQSELTLMGPKVHELSDHQASSLHTELSCLRAEGQHGQALWNELEAAQAAKEVFGQLLADQAHGHSQVLEALQQRLQDAEVVAAKRLAELEHCVALREAEVEGMASRIQEFEALLKAKEAIIVQRDLEIDSMNKWKATHSLELETILLPLAHFRRALEQQTLATSDEPPELQQLRIQCARLSHQLQVLHHRFLQCQMEPDQQQAPVAPADCSSPGADAQAARGQWQQDSVSMGLASAPQDNLQPAKVLVTLKDASLHKTESVMSVLEVCQRRLEAEMLLMKNAMRLDMENDREVPKGMQAKEQQLEDCQLGSGDLIIQVQQLQEKLNHLVHSMASRDTSMENPKSERPSLSENGSSSDCHNDEDISASLPIDVFSIGKTTWDVIDVIKNQDLLAQVEMPSFPTQEPLTPQGGSLSSQVSVHSDSLHPEEAEPQKDPARALDLSSWSSPEVLRKDSTPEPQHSLPLTPCTGTVSLHSVDTSSQDWTDSLQLADASGLLCYPGKSATAQAPLWVVTPSAENHHVERPATEKDVEDFIVTSFDSQELLTTSPHELTRSDATGKSDCPSGGMMLTLGSGGSETPRSSPVAAAVVPFSRRFDQSPGAMKEKEIHAKHMKALLQMVFDESHQILALSKNQDLPNSLSKGEPRDPLDGLPRDRQALLEATADRGEKEPSETCLTWSGELLRAIQEVFAREQENAELQSRPYGLDLGDYNVLFKRLEKVIKEQGDLQKVQCLPDRSSLLSEIQALRAQLRMTHLQNQEKLQQLCAALTSTEARGSQREHQLRRQVELLAYKVEQEKCIASDLQKTLNKEQEKASDVRKLLMVEQSAVQDLKSELHACKQENTRLLESLDKVQQEVLRLRAMLDGKENELKGVLQELECERGKERALQAQHEEQQLRHLQREGQSSRALEELKMSLEKQRAQNNQLCVALKHERAAKDNLQKELQIESSRCEALLAQEKGQLSELQKSLEAERSRSLELSEALQHERLLTEQLSRNMQEACARQETQIQHALLRKLKAEKARALELESMLEKVKKEAAHTQQQLESQAQERCVELRKEKEVSGSLRSAVDALQTHRQELGCCLEREREKSAWLQAELEQLSSRVKEQEGRKEARRMERRPSRTDVEKKKWQTDKEKLRELELQCQRDEHKIEQLQQMVRELKRKEKVPGGDGACRVSPRLGSLDLDHVQEQQQELEKIRQQLLCAAGLLTSFTNHTVDRTIKDWTSSNEKAVSSLMRTLEELKSELSIPASSKKKMAAELHVQLMNELLRDNDTLTKAISMATQEKAELCRTVSRLEKTLKHHMQKGCILSRQSKSSGKQDGMVPQSPLRNSDPEWHTATTSMEANTYNTKMEKLYLHYLRAESFRKALIYQKKYLLLLIGGFQDSEQETLSMIAHLGVFPSKADKKITTSRPFTKFRTAVRVVIAIQRLRFLVKKWREVDRRGALIHGKGSRQGHRMSRRQHSLSETRASLPSKEVSSGHTKDARHSLRSLAAVPLGKVERSTSSPNSRLERSLTASQDPEHSLTEYIHHLEMIQQRLGGLPADSTQKSCHQKVKQ", "length": 3056, "header": "tr|A0A9J7KAC6-1|A0A9J7HAA8_CRIGR Computationally mapped isoform of Pericentrin isoform X12 OS=Cricetulus griseus OX=10029 GN=Pcnt PE=4 SV=1 CANONICAL=A0A9J7HAA8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KDS2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAA8/entry#A0A9J7KDS2-1", "sequence": { "sequence": "MDEDEQEERRRKVEAGRAKLASFRQRKTKGDCPNSKKKTAKRKGSAVNAPVQEEGSVAPQNSELPQGGAGFESTSCSNTLEGTRGAFAAQERQDCELDEPGLQAQQQQPQPQPQPTQTAHSLELEALRLSLNNMHTAQLELTQANLQKEKETALTELREMLNGRRAQELALLQSRQQCELELMREQLAREKEEVVLRCGQETAELKEKLRSEMEKSVQMIETLKQDWESERQLCLENLRKELSAKHQSEMEGLQNQFQRELAEQRAELEKIFQAKHEAEVSLKETQHQAAVKKLQEDLQSEHCQYLQDLEMKFREKEKEKELELENLQASYEELKAQSQEEIRCLWSQLESVKTNTEELNGSWEPCLAQDSHLEELEHLRSDFAQQQQQERAQHKLELEHLRSDFVQQQQQERAQHELELEHLRVYFEKKLRDAEKTYQEDLTLFQQRLQEAREDSLESGEISSSCIFPEETSGRGRKEQPDPLDLQLEQLKENSTSLQAGLEEDPRHETGVLSSSLNFQLKENKSHSYRLRPEEAEQERLPLTLSEQHSQELAQEHLQYAQDMAMEADAQVAARILTLEAEHKDVCKVSLLQTELKEAVELLKIENRNLQEKLQHETHLKEELERVKHSLVEDHQVKLNKAEEKIQLMKQEFQKKEAEWERSHEDFKRDTEGRLTSMFIELREKAESEKQSIISRFEHRESGMRHLQEQQAAQILDLERSLMEQQGRLRQLEQELTRDEVLPCSRCGQEPLMAQDEEHIMLLRVKEDCALQLMMAQNRFLEERKEIMEKFAKEQDAFLRDTQEKHAHELQLLQQGHQQQLQALKIELETKHHSELAEQLASLESKQQALVETHVAELQVKHNAEISTLQMKHLTDLHAAKSFYLTDIETIRDEHRKALELLQAELEDQLQKKDSSHKEILTHELEKLKHEELQSAKDSLRIKIHAKHTEEAKGLATDMQGTQQEELAMAVHNQRHLLGKDGNAALGSVGAEVLLHPAVPQELGDPHAVEMQKPQAELAKSQELPASQEQAALVVVAQAFDPCTRKAETGPISEFKLKGQVFSLSREVEECRAELERLQQRRERENQEDTTLICMLRADADLAQSKGKVLRDALRRLLGLFGETLKAAVTLKSRISERAGLLLDHVDATDTSDAQLAAAALGDMWSDEGLLEIDRTLPEGAETSSVSEISSHVCESFFMSPENTLECEQPIRKVYQSLSTAVDGLLEMALDSSKQLEEAHQLHCCVEKELRHRNEEMAQAVQKQQELLEHLRQESAAKDGLTLELHMAEGLLEGLRVEKAELQEALDKKEESEQQLILELESLQKQLQQVAQELVTLREENSVLWNQKETFTNEAKEREAALQKEVESLSRDQWEARKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLTEEVATLKQELAALDKHLRSQRQFMDEQAAEREHEREEFQQEIQRLEEQLRQAARPRPPGPRDSQCAQLDEEVELLQEKLREKLDGFNELVIKKDFADQQLLIQEKEIKRLEETNVSLQRQVAQLQEELEKQKKNMEELKCRLDEAECPKPSQDSSSRGPETQPEVTESTHLEPESEVVPSRNSEIEELKAIIENLRENQEQLQKDKAEEIEQLHEVIEKLQSELTLMGPKVHELSDHQASSLHTELSCLRAEGQHGQALWNELEAAQAAKEVFGQLLADQAHGHSQVLEALQQRLQDAEVVAAKRLAELEHCVALREAEVEGMASRIQEFEALLKAKEAIIVQRDLEIDSMNKWKATHSLELETILLPLAHFRRALEQQTLATSDEPPELQQLRIQCARLSHQLQVLHHRFLQCQMEPDQQQAPVAPADCSSPGADAQAARGQWQQDSVSMGLASAPQDNLQPAKVLVTLKDASLHKTESVMSVLEVCQRRLEAEMLLMKNAMRLDMENDREVPKGMQAKEQQLEDCQLGSGDLIIQVQQLQEKLNHLVHSMASRDTSMENPKSERPSLSENGSSSDCHNDEDISASLPIDVFSIGKTTWDVIDVIKNQDLLAQVEMPSFPTQEPLTPQGGSLSSQVSVHSDSLHPEEAEPQKDPARALDLSSWSSPEVLRKDSTPEPQHSLPLTPCTGTVSLHSVDTSSQDWTDSLQLADASGLLCYPGKSATAQAPLWVVTPSAENHHVERPATEKDVEDFIVTSFDSQELLTTSPHELTRSDATGKSDCPSGGMMLTLGSGGSETPRSSPVAAAVVPFSRRFDQSPGAMKEKEIHAKHMKALLQMVFDESHQILALSKNQDLPNSLSKGEPRDPLDGLPRDRQALLEATADRGEKEPSETCLTWSGELLRAIQEVFAREQENAELQSRPYGLDLGDYNVLFKRLEKVIKEQGDLQKVQCLPDRSSLLSEIQALRAQLRMTHLQNQEKLQQLCAALTSTEARGSQREHQLRRQVELLAYKVEQEKCIASDLQKTLNKEQEKASDVRKLLMVEQSAVQDLKSELHACKQENTRLLESLDKVQQEVLRLRAMLDGKENELKGVLQELECERGKERALQAQHEEQQLRHLQREGQSSRALEELKMSLEKQRAQNNQLCVALKHERAAKDNLQKELQIESSRCEALLAQEKGQLSELQKSLEAERSRSLELSEALQHERLLTEQLSRNMQEACARQETQIQHALLRKLKAEKARALELESMLEKVKKEAAHTQQQLESQAQERCVELRKEKEVSGSLRSAVDALQTHRQELGCCLEREREKSAWLQAELEQLSSRVKEQEGRKEARRMERRPSRTDVEKKKWQTDKEKLRELELQCQRDEHKIEQLQQMVRELKRKEKVPGGDGACRVSPRLGSLDLDHVQEQQQELEKIRQQLLCAAGLLTSFTNHTVDRTIKDWTSSNEKAVSSLMRTLEELKSELSIPASSKKKMAAELHVQLMNELLRDNDTLTKAISMATQEKAELCRTVSRLEKTLKHHMQKGCILSRQSKSSGKQDGMVPQSPLRNSDPEWHTATTSMEANTYNTKMEKLYLHYLRAESFRKALIYQKKYLLLLIGGFQDSEQETLSMIAHLGVFPSKADKKITTSRPFTKFRTAVRVVIAIQRLRFLVKKWREVDRRGALIHGKGSRQGHRMSRRQHSLSETRASLPSKEVSSGHTKDARHSLRSLAAVPLGKVERSTSSPNSRLERSLTASQDPEHSLTEYIHHLEMIQQRLGGLPADSTQKSCHQKVKQ", "length": 3189, "header": "tr|A0A9J7KDS2-1|A0A9J7HAA8_CRIGR Computationally mapped isoform of Pericentrin isoform X12 OS=Cricetulus griseus OX=10029 GN=Pcnt PE=4 SV=1 CANONICAL=A0A9J7HAA8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F7Q7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7Q7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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"summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281735" }, "gene_names": [ { "name": "Ccdc18", "type": "recommended", "evidence": [ { "id": "A0A9J7H590", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H590" } ] }, { "name": "Ccdc18", "type": "synonym", "evidence": [ { "id": "XP_027281735", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281735" } ] } ], "protein_names": [ { "name": "Coiled-coil domain-containing protein 18 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7H590", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H590/entry#names_and_taxonomy" } ] }, { "name": "coiled-coil domain-containing protein 18 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027281735", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281735" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027281735", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281735" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H590", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H590" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ccdc18", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H590", "locus": {} } ], "crossref": [ { "id": "100770535", "url": "https://www.ncbi.nlm.nih.gov/gene/100770535", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:100770535", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770535", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H590", "url": "https://www.orthodb.org/?gene=A0A9J7H590", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR18875", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR18875", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR18875:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR18875:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_027281735", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027281735", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GBB3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBB3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GBB3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBB3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GC50", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GC50", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GC50-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GC50-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GC87", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GC87", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GC87-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GC87-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H590", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H590", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H590-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H590-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JP31", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JP31", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JP31-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JP31-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JWL4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JWL4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JWL4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JWL4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JY59", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JY59", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JY59-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JY59-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEYTHYYNKDDNDEESLLENVASLRHELKITEWSLQNLGEELSSVSPSENSDSVCNPSRSERLILEELIQPSRLGHLNYPPYKKVCKTSGSTDFQKKPRDKMSFSSASMDQEIKRLRDKLNKLRQQNACLVTQNHSLMTKIESIHFELTQSKAKMSMLQSAQEQVANIPILEEQIINLEAEVSAQDKVLREAEEKLEQSQKMVIEKERSLQEAKEECIRLKVDLLEQSKQGKRAERQRNEALYNAEELSKAFQQYKEKVAEKMEKVQAEEEILEKNLNNCEKENKRLQEKCNLYKSELEILKEKFRQLKEEHSSGKEKLRIMAMKNSEVMSQLTESRQSILKLESELEDKDEILREKFSLINENRELKVRVATQNERLDLCQQEIDSSRLELRSLEKLMSQMPVSLKREIVGFKSSFSKHMTNSFSIKEDNRIGCCEANKSMISELRIKLAIKEAEIQKLHANLTVSQLSHNAAAYVQEGGKTSVLETEPVKLGGGQAESIKDRNQHTMKKHYEREKERLAAGIEELHAKLAQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNATKLENEITKKCSQLLTLEKQLEEKIIDYSSIAAKNAELEQELMEKNEKIRSLESNINTEHEKICFAFEKAKKIHLEQHNEMEKQIERLETQLEQRDQQFKEQEKTMSILQQDILCKQHHLESLDRLLTESKVEMEKENMKKDEALKALQIHVSEETVKVRQLDSALEICKEELALHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNAILQHTLQQQQQMLQQETIRNGELEGIQNKLEKQVSKQEQELQKQREISAEKLRIMEEKYETAIHDADLKRQKIIELTGTARQAKLELDQYKEELSKMEKEIIHLKRDVENKSIHLSQLDMILDQTKTELEKKTNTVKELERLQHHTEAELTETMQKREALENELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELVEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKESNKQVENLNEKLQNAKEQLREKEFIMLQHEQEISQLKKETERTHQRMKEMESVMKEQEEYIATQYKEVIDLGQELRLTQEQVQNSHSDLVEARRQEVQAQREIERLSNELEDIKQLSNEKEAHGNRLAEELGASQVREAHLEARMQAEIKKLLSEVESLKEAYHMEMISHEENHAKWKVSADSQKTSVQQLNEQLEKAKLELEEAQDTVSNLHQQVQDRNEVIEAANEALLIKESELSRLQAKISGHEKTEDLKIPPASFRTLTEIMPDIQDPKFAKHSQMSFFKGRKLRRSISASDLSFKSHVNEDLSEELLQDLKKMQLEQLSALEGGHKDLALKHSDSLKPLPYNLEDDSSESNDFSTLSGMLRYINKEVRLLKKSSLQTAGLTQEGKL", "length": 1453, "header": "tr|A0A9J7H590-1|A0A9J7H590_CRIGR Isoform 1 of Coiled-coil domain-containing protein 18 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ccdc18 PE=4 SV=1 CANONICAL=A0A9J7H590-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GBB3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H590/entry#A0A9J7GBB3-1", "sequence": { "sequence": "MVIEKERSLQEAKEECIRLKVDLLEQSKQGKRAERQRNEALYNAEELSKAFQQYKEKVAEKMEKVQAEEEILEKNLNNCEKENKRLQEKCNLYKSELEILKEKFRQLKEEHSSGKEKLRIMAMKNSEVMSQLTESRQSILKLESELEDKDEILREKFSLINENRELKVRVATQNERLDLCQQEIDSSRLELRSLEKLMSQMPVSLKREIVGFKSSFSKHMTNSFSIKEDNRIGCCEANKSMISELRIKLAIKEAEIQKLHANLTVSQLSHNAAAYVQEGGKTSVLETEPVKLGGGQAESIKDRNQHTMKKHYEREKERLAAGIEELHAKLAQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNATKLENEITKKCSQLLTLEKQLEEKIIDYSSIAAKNAELEQELMEKNEKIRSLESNINTEHEKICFAFEKAKKIHLEQHNEMEKQIERLETQLEQRDQQFKEQEKTMSILQQDILCKQHHLESLDRLLTESKVEMEKENMKKDEALKALQIHVSEETVKVRQLDSALEICKEELALHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNAILQHTLQQQQQMLQQETIRNGELEGIQNKLEKQVSKQEQELQKQREISAEKLRIMEEKYETAIHDADLKRQKIIELTGTARQAKLELDQYKEELSKMEKEIIHLKRDVENKSIHLSQLDMILDQTKTELEKKTNTVKELERLQHHTEAELTETMQKREALENELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELVEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKESNKQVENLNEKLQNAKEQLREKEFIMLQHEQEISQLKKETERTHQRMKEMESVMKEQEEYIATQYKEVIDLGQELRLTQEQVQNSHSDLVEARRQEVQAQREIERLSNELEDIKQLSNEKEAHGNRLAEELGASQVREAHLEARMQAEIKKLLSEVESLKEAYHMEMISHEENHAKWKVSADSQKTSVQQLNEQLEKAKLELEEAQDTVSNLHQQVQDRNEVIEAANEALLIKESELSRLQAKISGHEKTEDLKIPPASFRTLTEIMPDIQDPKFAKHSQMSFFKGRKLRRSISASDLSFKSHVNEDLSEELLQDLKKMQLEQLSALEGGHKDLALKHSDSLKPLPYNLEDDSSESNDFSTLSGMLRYINKEVRLLKKSSLQTAGLTQEGKL", "length": 1252, "header": "tr|A0A9J7GBB3-1|A0A9J7H590_CRIGR Computationally mapped isoform of Coiled-coil domain-containing protein 18 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ccdc18 PE=4 SV=1 CANONICAL=A0A9J7H590-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GC50-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H590/entry#A0A9J7GC50-1", "sequence": { "sequence": "MEYTHYYNKDDNDEESLLENVASLRHELKITEWSLQNLGEELSSVSPSENSDSVCNPSRSERLILEELIQPSRLGHLNYPPYKKVCKTSGSTDFQKKPRDKMSFSSASMDQEIKRLRDKLNKLRQQNACLVTQNHSLMTKIESIHFELTQSKAKMSMLQSAQEQVANIPILEEQIINLEAEVSAQDKVLREAEEKLEQSQKMVIEKERSLQEAKEECIRLKVDLLEQSKQGKRAERQRNEALYNAEELSKAFQQYKEKVAEKMEKLKREIVGFKSSFSKHMTNSFSIKEDNRIGCCEANKSMISELRIKLAIKEAEIQKLHANLTVSQLSHNAAAYVQEGGKTSVLETEPVKLGGGQAESIKDRNQHTMKKHYEREKERLAAGIEELHAKLAQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNATKLENEITKKCSQLLTLEKQLEEKIIDYSSIAAKNAELEQELMEKNEKIRSLESNINTEHEKICFAFEKAKKIHLEQHNEMEKQIERLETQLEQRDQQFKEQEKTMSILQQDILCKQHHLESLDRLLTESKVEMEKENMKKDEALKALQIHVSEETVKVRQLDSALEICKEELALHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNAILQHTLQQQQQMLQQETIRNGELEGIQNKLEKQVSKQEQELQKQREISAEKLRIMEEKYETAIHDADLKRQKIIELTGTARQAKLELDQYKEELSKMEKEIIHLKRDVENKSIHLSQLDMILDQTKTELEKKTNTVKELERLQHHTEAELTETMQKREALENELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELVEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKESNKQVENLNEKLQNAKEQLREKEFIMLQHEQEISQLKKETERTHQRMKEMESVMKEQEEYIATQYKEVIDLGQELRLTQEQVQNSHSDLVEARRQEVQAQREIERLSNELEDIKQLSNEKEAHGNRLAEELGASQVREAHLEARMQAEIKKLLSEVESLKEAYHMEMISHEENHAKWKVSADSQKTSVQQLNEQLEKAKLELEEAQDTVSNLHQQVQDRNEVIEAANEALLIKESELSRLQAKISGHEKTEDLKIPPASFRTLTEIMPDIQDPKFAKHSQMSFFKGRKLRRSISASDLSFKSHVNEDLSEELLQDLKKMQLEQLSALEGGHKDLALKHSDSLKPLPYNLEDDSSESNDFSTLSGMLRYINKEVRLLKKSSLQTAGLTQEGKL", "length": 1313, "header": "tr|A0A9J7GC50-1|A0A9J7H590_CRIGR Computationally mapped isoform of Coiled-coil domain-containing protein 18 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ccdc18 PE=4 SV=1 CANONICAL=A0A9J7H590-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GC87-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H590/entry#A0A9J7GC87-1", "sequence": { "sequence": "MEYTHYYNKDDNDEESLLENVASLRHELKITEWSLQNLGEELSSVSPSENSDSVCNPSRSERLILEELIQPSRLGHLNYPPYKKVCKTSGSTDFQKKPRDKMSFSSASMDQEIKRLRDKLNKLRQQNACLVTQNHSLMTKIESIHFELTQSKAKMSMLQSAQEQVANIPILEEQIINLEAEVSAQDKVLREAEEKLEQSQKMVIEKERSLQEAKEECIRLKVDLLEQSKQGKRAERQRNEALYNAEELSKAFQQYKEKVAEKMEKVQAEEEILEKNLNNCEKENKRLQEKCNLYKSELEILKEKFRQLKEEHSSGKEKLRIMAMKNSEVMSQLTESRQSILKLESELEDKDEILREKFSLINENRELKVRVATQNERLDLCQQEIDSSRLELRSLEKLMSQMPLKREIVGFKSSFSKHMTNSFSIKEDNRIGCCEANKSMISELRIKLAIKEAEIQKLHANLTVSQLSHNAAAYVQEGGKTSVLETEPVKLGGGQAESIKDRNQHTMKKHYEREKERLAAGIEELHAKLAQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNATKLENEITKKCSQLLTLEKQLEEKIIDYSSIAAKNAELEQELMEKNEKIRSLESNINTEHEKICFAFEKAKKIHLEQHNEMEKQIERLETQLEQRDQQFKEQEKTMSILQQDILCKQHHLESLDRLLTESKVEMEKENMKKDEALKALQIHVSEETVKVRQLDSALEICKEELALHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNAILQHTLQQQQQMLQQETIRNGELEGIQNKLEKQVSKQEQELQKQREISAEKLRIMEEKYETAIHDADLKRQKIIELTGTARQAKLELDQYKEELSKMEKEIIHLKRDVENKSIHLSQLDMILDQTKTELEKKTNTVKELERLQHHTEAELTETMQKREALENELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELVEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKESNKQVENLNEKLQNAKEQLREKEFIMLQHEQEISQLKKETERTHQRMKEMESVMKEQEEYIATQYKEVIDLGQELRLTQEQVQNSHSDLVEARRQEVQAQREIERLSNELEDIKQLSNEKEAHGNRLAEELGASQVREAHLEARMQAEIKKLLSEVESLKEAYHMEMISHEENHAKWKVSADSQKTSVQQLNEQLEKAKLELEEAQDTVSNLHQQVQDRNEVIEAANEALLIKESELSRLQAKISGHEKTEDLKIPPASFRTLTEIMPDIQDPKFAKHSQMSFFKGRKLRRSISASDLSFKSHVNEDLSEELLQDLKKMQLEQLSALEGGHKDLALKHSDSLKPLPYNLEDDSSESNDFSTLSGMLRYINKEVRLLKKSSLQTAGLTQEGKL", "length": 1451, "header": "tr|A0A9J7GC87-1|A0A9J7H590_CRIGR Computationally mapped isoform of Coiled-coil domain-containing protein 18 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ccdc18 PE=4 SV=1 CANONICAL=A0A9J7H590-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H590-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H590/entry#A0A9J7H590-1", "sequence": { "sequence": "MEYTHYYNKDDNDEESLLENVASLRHELKITEWSLQNLGEELSSVSPSENSDSVCNPSRSERLILEELIQPSRLGHLNYPPYKKVCKTSGSTDFQKKPRDKMSFSSASMDQEIKRLRDKLNKLRQQNACLVTQNHSLMTKIESIHFELTQSKAKMSMLQSAQEQVANIPILEEQIINLEAEVSAQDKVLREAEEKLEQSQKMVIEKERSLQEAKEECIRLKVDLLEQSKQGKRAERQRNEALYNAEELSKAFQQYKEKVAEKMEKVQAEEEILEKNLNNCEKENKRLQEKCNLYKSELEILKEKFRQLKEEHSSGKEKLRIMAMKNSEVMSQLTESRQSILKLESELEDKDEILREKFSLINENRELKVRVATQNERLDLCQQEIDSSRLELRSLEKLMSQMPVSLKREIVGFKSSFSKHMTNSFSIKEDNRIGCCEANKSMISELRIKLAIKEAEIQKLHANLTVSQLSHNAAAYVQEGGKTSVLETEPVKLGGGQAESIKDRNQHTMKKHYEREKERLAAGIEELHAKLAQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNATKLENEITKKCSQLLTLEKQLEEKIIDYSSIAAKNAELEQELMEKNEKIRSLESNINTEHEKICFAFEKAKKIHLEQHNEMEKQIERLETQLEQRDQQFKEQEKTMSILQQDILCKQHHLESLDRLLTESKVEMEKENMKKDEALKALQIHVSEETVKVRQLDSALEICKEELALHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNAILQHTLQQQQQMLQQETIRNGELEGIQNKLEKQVSKQEQELQKQREISAEKLRIMEEKYETAIHDADLKRQKIIELTGTARQAKLELDQYKEELSKMEKEIIHLKRDVENKSIHLSQLDMILDQTKTELEKKTNTVKELERLQHHTEAELTETMQKREALENELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELVEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKESNKQVENLNEKLQNAKEQLREKEFIMLQHEQEISQLKKETERTHQRMKEMESVMKEQEEYIATQYKEVIDLGQELRLTQEQVQNSHSDLVEARRQEVQAQREIERLSNELEDIKQLSNEKEAHGNRLAEELGASQVREAHLEARMQAEIKKLLSEVESLKEAYHMEMISHEENHAKWKVSADSQKTSVQQLNEQLEKAKLELEEAQDTVSNLHQQVQDRNEVIEAANEALLIKESELSRLQAKISGHEKTEDLKIPPASFRTLTEIMPDIQDPKFAKHSQMSFFKGRKLRRSISASDLSFKSHVNEDLSEELLQDLKKMQLEQLSALEGGHKDLALKHSDSLKPLPYNLEDDSSESNDFSTLSGMLRYINKEVRLLKKSSLQTAGLTQEGKL", "length": 1453, "header": "tr|A0A9J7H590-1|A0A9J7H590_CRIGR Isoform 1 of Coiled-coil domain-containing protein 18 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ccdc18 PE=4 SV=1 CANONICAL=A0A9J7H590-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JP31-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H590/entry#A0A9J7JP31-1", "sequence": { "sequence": "MEYTHYYNKDDNDEESLLENVASLRHELKITEWSLQNLGEELSSVSPSENSDSVCNPSRSERLILEELIQPSRLGHLNYPPYKKVCKTSGSTDFQKKPRDKMSFSSASMDQEIKRLRDKLNKLRQQNACLVTQNHSLMTKIESIHFELTQSKAKMSMLQSAQEQVANIPILEEQIINLEAEVSAQDKVLREAEEKLEQSQKMVIEKERSLQEAKEECIRLKVDLLEQSKQGKRAERQRNEALYNAEELSKAFQQYKEKVAEKMEKVQAEEEILEKNLNNCEKENKRLQEKCNLYKSELEILKEKFRQLKEEHSSGKEKLRIMAMKNSEVMSQLTESRQSILKLESELEDKDEILREKFSLINENRELKVRVATQNERLDLCQQEIDSSRLELRSLEKLMSQMPVSLKREIVGFKSSFSKHMTNSFSIKEDNRIGCCEANKSMISELRIKLAIKEAEIQKLHANLTVSQLSHNAAAYVQEGGKTSVLETEPVKLGGGQAESIKDRNQHTMKKHYEREKERLAAGIEELHAKLAQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNATKLENEITKKCSQLLTLEKQLEEKIIDYSSIAAKNAELEQELMEKNEKIRSLESNINTEHEKICFAFEKAKKIHLEQHNEMEKQIERLETQLEQRDQQFKEQEKTMSILQQDILCKQHHLESLDRLLTESKVEMEKENMKKDEALKALQIHVSEETVKVRQLDSALEICKEELALHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNAILQHTLQQQQQMLQQETIRNGELEGIQNKLEKQVSKQEQELQKQREISAEKLRIMEEKYETAIHDADLKRQKIIELTGTARQAKLELDQYKEELSKMEKEIIHLKRDVENKSIHLSQLDMILDQTKTELEKKTNTVKELERLQHHTEAELTETMQKREALENELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELVEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKESNKQVENLNEKLQNAKEQLREKEFIMLQHEQEISQLKKETERTHQRMKEMESVMKEQEEYIATQYKEVIDLGQELRLTQEQVQNSHSDLVEARRQEVQAQREIERLSNELEDIKQLSNEKMISHEENHAKWKVSADSQKTSVQQLNEQLEKAKLELEEAQDTVSNLHQQVQDRNEVIEAANEALLIKESELSRLQAKISGHEKTEDLKIPPASFRTLTEIMPDIQDPKFAKHSQMSFFKGRKLRRSISASDLSFKSHVNEDLSEELLQDLKKMQLEQLSALEGGHKDLALKHSDSLKPLPYNLEDDSSESNDFSTLSGMLRYINKEVRLLKKSSLQTAGLTQEGKL", "length": 1407, "header": "tr|A0A9J7JP31-1|A0A9J7H590_CRIGR Computationally mapped isoform of Coiled-coil domain-containing protein 18 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ccdc18 PE=4 SV=1 CANONICAL=A0A9J7H590-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JWL4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H590/entry#A0A9J7JWL4-1", "sequence": { "sequence": "MEFAEFGGRVIQMSFSSASMDQEIKRLRDKLNKLRQQNACLVTQNHSLMTKIESIHFELTQSKAKMSMLQSAQEQVANIPILEEQIINLEAEVSAQDKVLREAEEKLEQSQKMVIEKERSLQEAKEECIRLKVDLLEQSKQGKRAERQRNEALYNAEELSKAFQQYKEKVAEKMEKVQAEEEILEKNLNNCEKENKRLQEKCNLYKSELEILKEKFRQLKEEHSSGKEKLRIMAMKNSEVMSQLTESRQSILKLESELEDKDEILREKFSLINENRELKVRVATQNERLDLCQQEIDSSRLELRSLEKLMSQMPVSLKREIVGFKSSFSKHMTNSFSIKEDNRIGCCEANKSMISELRIKLAIKEAEIQKLHANLTVSQLSHNAAAYVQEGGKTSVLETEPVKLGGGQAESIKDRNQHTMKKHYEREKERLAAGIEELHAKLAQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNATKLENEITKKCSQLLTLEKQLEEKIIDYSSIAAKNAELEQELMEKNEKIRSLESNINTEHEKICFAFEKAKKIHLEQHNEMEKQIERLETQLEQRDQQFKEQEKTMSILQQDILCKQHHLESLDRLLTESKVEMEKENMKKDEALKALQIHVSEETVKVRQLDSALEICKEELALHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNAILQHTLQQQQQMLQQETIRNGELEGIQNKLEKQVSKQEQELQKQREISAEKLRIMEEKYETAIHDADLKRQKIIELTGTARQAKLELDQYKEELSKMEKEIIHLKRDVENKSIHLSQLDMILDQTKTELEKKTNTVKELERLQHHTEAELTETMQKREALENELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELVEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKESNKQVENLNEKLQNAKEQLREKEFIMLQHEQEISQLKKETERTHQRMKEMESVMKEQEEYIATQYKEVIDLGQELRLTQEQVQNSHSDLVEARRQEVQAQREIERLSNELEDIKQLSNEKEAHGNRLAEELGASQVREAHLEARMQAEIKKLLSEVESLKEAYHMEMISHEENHAKWKVSADSQKTSVQQLNEQLEKAKLELEEAQDTVSNLHQQVQDRNEVIEAANEALLIKESELSRLQAKISGHEKTEDLKIPPASFRTLTEIMPDIQDPKFAKHSQMSFFKGRKLRRSISASDLSFKSHVNEDLSEELLQDLKKMQLEQLSALEGGHKDLALKHSDSLKPLPYNLEDDSSESNDFSTLSGMLRYINKEVRLLKKSSLQTAGLTQEGKL", "length": 1364, "header": "tr|A0A9J7JWL4-1|A0A9J7H590_CRIGR Computationally mapped isoform of Coiled-coil domain-containing protein 18 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ccdc18 PE=4 SV=1 CANONICAL=A0A9J7H590-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JY59-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H590/entry#A0A9J7JY59-1", "sequence": { "sequence": "MEYTHYYNKDDNDEESLLENVASLRHELKITEWSLQNLGEELSSVSPSENSDSVCNPSRSERLILEELIQPSRLGHLNYPPYKKVCKTSGSTDFQKKPRDKMSFSSASMDQEIKRLRDKLNKLRQQNACLVTQNHSLMTKIESIHFELTQSKAKMSMLQSAQEQVANIPILEEQIINLEAEVSAQDKVLREAEEKLEQSQKMVIEKERSLQEAKEECIRLKVDLLEQSKQGKRAERQRNEALYNAEELSKAFQQYKEKVAEKMEKVQAEEEILEKNLNNCEKENKRLQEKCNLYKSELEILKEKFRQLKEEHSSGKEKLRIMAMKNSEVMSQLTESRQSILKLESELEDKDEILREKFSLINENRELKVRVATQNERLDLCQQEIDSSRLELRSLEKLMSQMPVSLKREIVGFKSSFSKHMTNSFSIKEDNRIGCCEANKSMISELRIKLAIKEAEIQKLHANLTVSQLSHNAAAYVQEGGKTSVLETEPVKLGGGQAESIKDRNQHTMKKHYEREKERLAAGIEELHAKLAQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNATKLENEITKKCSQLLTLEKQLEEKIIDYSSIAAKNAELEQELMEKNEKIRSLESNINTEHEKICFAFEKAKKIHLEQHNEMEKQIERLETQLEQRDQQFKEQEKTMSILQQDILCKQHHLESLDRLLTESKVEMEKENMKKDEALKALQIHVSEETVKVRQLDSALEICKEELALHLNQLEGNKEKFEKQLKKKSEEVYCLQKELKIKNHSLQETSEQNAILQHTLQQQQQMLQQETIRNGELEGIQNKLEKQVSKQEQELQKQREISAEKLRIMEEKYETAIHDADLKRQKIIELTGTARQAKLELDQYKEELSKMEKEIIHLKRDVENKSIHLSQLDMILDQTKTELEKKTNTVKELERLQHHTEAELTETMQKREALENELQNAHGELKSTLRQLQELRDVLQKAQLSLEEKYTTIKDLTAELRECKMEIEDKKQELVEMDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELELKESNKQVMKEQEEYIATQYKEVIDLGQELRLTQEQVQNSHSDLVEARRQEVQAQREIERLSNELEDIKQLSNEKEAHGNRLAEELGASQVREAHLEARMQAEIKKLLSEVESLKEAYHMEMISHEENHAKWKVSADSQKTSVQQLNEQLEKAKLELEEAQDTVSNLHQQVQDRNEVIEAANEALLIKESELSRLQAKISGHEKTEDLKIPPASFRTLTEIMPDIQDPKFAKHSQMSFFKGRKLRRSISASDLSFKSHVNEDLSEELLQDLKKMQLEQLSALEGGHKDLALKHSDSLKPLPYNLEDDSSESNDFSTLSGMLRYINKEVRLLKKSSLQTAGLTQEGKL", "length": 1405, "header": "tr|A0A9J7JY59-1|A0A9J7H590_CRIGR Computationally mapped isoform of Coiled-coil domain-containing protein 18 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ccdc18 PE=4 SV=1 CANONICAL=A0A9J7H590-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBB3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBB3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GBB3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBB3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100770535", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770535", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H590", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H590" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 134, "end_pos": 136, "annotation": "n_glycosylation_sequon" }, { "start_pos": 439, "end_pos": 441, "annotation": "n_glycosylation_sequon" }, { "start_pos": 463, "end_pos": 465, "annotation": "n_glycosylation_sequon" }, { "start_pos": 565, "end_pos": 567, "annotation": "n_glycosylation_sequon" }, { "start_pos": 775, "end_pos": 777, "annotation": "n_glycosylation_sequon" }, { "start_pos": 896, "end_pos": 898, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 134, "end_pos": 136 }, { "start_pos": 439, "end_pos": 441 }, { "start_pos": 463, "end_pos": 465 }, { "start_pos": 565, "end_pos": 567 }, { "start_pos": 775, "end_pos": 777 }, { "start_pos": 896, "end_pos": 898 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7H6Y2-1", "uniprot_ac": "A0A9J7H6Y2", "uniprot_id": "A0A9J7H6Y2_CRIGR", "mass": { "chemical_mass": 126415.0, "monoisotopic_mass": 126415.0 }, "refseq": { "ac": "XP_035304817", "name": "voltage-dependent calcium channel subunit alpha-2/delta-4 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304817" }, "gene_names": [ { "name": "Cacna2d4", "type": "recommended", "evidence": [ { "id": "A0A9J7H6Y2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6Y2" } ] }, { "name": "Cacna2d4", "type": "synonym", "evidence": [ { "id": "XP_035304817", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304817" } ] } ], "protein_names": [ { "name": "Voltage-dependent calcium channel subunit alpha-2/delta-4 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7H6Y2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6Y2/entry#names_and_taxonomy" } ] }, { "name": "voltage-dependent calcium channel subunit alpha-2/delta-4 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035304817", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304817" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048601.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035304817", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304817" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H6Y2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6Y2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cacna2d4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6Y2", "locus": {} } ], "crossref": [ { "id": "A0A9J7H6Y2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H6Y2", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd01463", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01463", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100755076", "url": "https://www.ncbi.nlm.nih.gov/gene/100755076", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002035", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002035", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013608", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013608", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036465", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036465", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051173", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051173", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100755076", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755076", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H6Y2", "url": "https://www.orthodb.org/?gene=A0A9J7H6Y2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10166", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10166", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10166:SF59", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10166:SF59", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08399", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08399", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08473", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08473", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13768", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13768", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035304817", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304817", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GFC9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFC9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GFC9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFC9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H4T4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4T4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H4T4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H4T4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H6Y2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6Y2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H6Y2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6Y2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPRCSILPSSHKWDHYGQWPTAWTILRKMPVILWLLLLDTSLPTVRGQTKIPLETVKLWADTFGRNLYNTVTRYSGSLLLQKKYKDAESSLKIQEVDGLELVKKFSEDMETMLRRKVEAVKNLVEAAEEADLNHEFNASLVFNYYNSVLINEKDEKGNYVELGAEFLLESDAHFSNQRVNVSMSSVQLPTNVYNKDPDILNGVYMSEALNPVFVENFQRDPTLTWQYFGSSTGFFRIYPGIKWKPDENGVITFDCRNRGWYIQAATSPKDIVILVDMSGSMKGLRMAIAKHTITTILDTLGENDFVNIIAYNDYVHYIEPCFKGILVQADRDNREHFKQLVDELMVKGVGVVSQALIEAFEILNQFQESRQGSLCNQAIMLITDGAVEDYEPVFEKYNWPDRKVRVFTYLIGREVTFADRLKWIACNNKGYYTQISTLADAQENVMEYLHVLSRPMVINHDHDIIWTEAYMDSRLFTSEAQSLMLLTTVAMPVFSKKNETRSHGILLGVVGSDVTLRELMKLAPRYKLGVHGYAFLNTNNGYILSHPDLRPLYRDGRKLKPKPNYNSVDLSEVEWDDQAEALRTAMINGETGSHSMDVKVPLDKGKRVLFLTNDYFFTDISDTPFSLGVVLTRGHGEYILLGNTSVEEGLHDLLHPDLTLASDWIYCITDIDPDHRKLSQLEAVVRFLTGMDPGLECDEELVREVLFDAVVTAPMEAYWTALALNISEASEPGVDVAFLGTRAGLLRQSLFVGSEKISDRKFLTPEDEASIFTMDHFPLWYRQASEQPPGSFVFNLRWEEGPDSPGKPVAIRASTSITVTVDGKTAIAAAVGIQMQVDYLQRQFWAAMKQCSTEEGPCPKSCEDTDLDCFIIDNNGFILISERPQEMGRLLGEVDSALMIQLLSTGVFSRVTMYDYQAMCKPPDHHHSAAQALISPLSASLMVVKWLLHEFLLFLLHWSAWGSWHDKGSEAKAVFHHSHKHKKQDLLHPCDTEYPVFVHQTAIQEANGIIECGACQKTFVMQQIPSSNLLLLVTDCTCDCSSYSPILQEATEVKYNASVKCDRMRSQKPRRRPGSCHAFHPEENAQDCGGASDTVASLPLLLLPLWAWLLPYQLLW", "length": 1116, "header": "tr|A0A9J7H6Y2-1|A0A9J7H6Y2_CRIGR Isoform 1 of Voltage-dependent calcium channel subunit alpha-2/delta-4 isoform X2 OS=Cricetulus griseus OX=10029 GN=Cacna2d4 PE=3 SV=1 CANONICAL=A0A9J7H6Y2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GFC9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6Y2/entry#A0A9J7GFC9-1", "sequence": { "sequence": "MQVDYLQRQFWAAMKQCSTEEGPCPKSCEDTDLDCFIIDNNGFILISERPQEMGRLLGEVDSALMIQLLSTGVFSRVTMYDYQAMCKPPDHHHSAAQALISPLSASLMVVKWLLHEFLLFLLHWSAWGSWHDKGSEAHKHKKQDLLHPCDTEYPVFVHQTAIQEANGIIECGACQKTFVMQQIPSSNLLLLVTDCTCDCSSYSPILQEATEVKYNASVKCDRMRSQKPRRRPGSCHAFHPEENAQDCGGASDTVASLPLLLLPLWAWLLPYQLLW", "length": 275, "header": "tr|A0A9J7GFC9-1|A0A9J7H6Y2_CRIGR Computationally mapped isoform of Voltage-dependent calcium channel subunit alpha-2/delta-4 isoform X2 OS=Cricetulus griseus OX=10029 GN=Cacna2d4 PE=3 SV=1 CANONICAL=A0A9J7H6Y2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H4T4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6Y2/entry#A0A9J7H4T4-1", "sequence": { "sequence": "MPRCSILPSSHKWDHYGQWPTAWTILRKMPVILWLLLLDTSLPTVRGQTKIPLETVKLWADTFGRNLYNTVTRYSGSLLLQKKYKDAESSLKIQEVDGLELVKKFSEDMETMLRRKVEAVKNLVEAAEEADLNHEFNASLVFNYYNSVLINEKDEKGNYVELGAEFLLESDAHFSNQRVNVSMSSVQLPTNVYNKDPDILNGVYMSEALNPVFVENFQRDPTLTWQYFGSSTGFFRIYPGIKWKPDENGVITFDCRNRGWYIQAATSPKDIVILVDMSGSMKGLRMAIAKHTITTILDTLGENDFVNIIAYNDYVHYIEPCFKGILVQADRDNREHFKQLVDELMVKGVGVVSQALIEAFEILNQFQESRQGSLCNQAIMLITDGAVEDYEPVFEKYNWPDRKVRVFTYLIGREVTFADRLKWIACNNKGYYTQISTLADAQENVMEYLHVLSRPMVINHDHDIIWTEAYMDSRLFTSEAQSLMLLTTVAMPVFSKKNETRSHGILLGVVGSDVTLRELMKLAPRYKYRDGRKLKPKPNYNSVDLSEVEWDDQAEALRTAMINGETGSHSMDVKVPLDKGKRVLFLTNDYFFTDISDTPFSLGVVLTRGHGEYILLGNTSVEEGLHDLLHPDLTLASDWIYCITDIDPDHRKLSQLEAVVRFLTGMDPGLECDEELVREVLFDAVVTAPMEAYWTALALNISEASEPGVDVAFLGTRAGLLRQSLFVGSEKISDRKFLTPEDEASIFTMDHFPLWYRQASEQPPGSFVFNLRWEEGPDSPGKPVAIRASTSITVTVDGKTAIAAAVGIQMQVDYLQRQFWAAMKQCSTEEGPCPKSCEDTDLDCFIIDNNGFILISERPQEMGRLLGEVDSALMIQLLSTGVFSRVTMYDYQAMCKPPDHHHSAAQALISPLSASLMVVKWLLHEFLLFLLHWSAWGSWHDKGSEAKAVFHHSHKHKKQDLLHPCDTEYPVFVHQTAIQEANGIIECGACQKTFVMQQIPSSNLLLLVTDCTCDCSSYSPILQEATEVKYNASVKCDRMRSQKPRRRPGSCHAFHPEENAQDCGGASDTVASLPLLLLPLWAWLLPYQLLW", "length": 1091, "header": "tr|A0A9J7H4T4-1|A0A9J7H6Y2_CRIGR Computationally mapped isoform of Voltage-dependent calcium channel subunit alpha-2/delta-4 isoform X2 OS=Cricetulus griseus OX=10029 GN=Cacna2d4 PE=3 SV=1 CANONICAL=A0A9J7H6Y2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H6Y2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6Y2/entry#A0A9J7H6Y2-1", "sequence": { "sequence": "MPRCSILPSSHKWDHYGQWPTAWTILRKMPVILWLLLLDTSLPTVRGQTKIPLETVKLWADTFGRNLYNTVTRYSGSLLLQKKYKDAESSLKIQEVDGLELVKKFSEDMETMLRRKVEAVKNLVEAAEEADLNHEFNASLVFNYYNSVLINEKDEKGNYVELGAEFLLESDAHFSNQRVNVSMSSVQLPTNVYNKDPDILNGVYMSEALNPVFVENFQRDPTLTWQYFGSSTGFFRIYPGIKWKPDENGVITFDCRNRGWYIQAATSPKDIVILVDMSGSMKGLRMAIAKHTITTILDTLGENDFVNIIAYNDYVHYIEPCFKGILVQADRDNREHFKQLVDELMVKGVGVVSQALIEAFEILNQFQESRQGSLCNQAIMLITDGAVEDYEPVFEKYNWPDRKVRVFTYLIGREVTFADRLKWIACNNKGYYTQISTLADAQENVMEYLHVLSRPMVINHDHDIIWTEAYMDSRLFTSEAQSLMLLTTVAMPVFSKKNETRSHGILLGVVGSDVTLRELMKLAPRYKLGVHGYAFLNTNNGYILSHPDLRPLYRDGRKLKPKPNYNSVDLSEVEWDDQAEALRTAMINGETGSHSMDVKVPLDKGKRVLFLTNDYFFTDISDTPFSLGVVLTRGHGEYILLGNTSVEEGLHDLLHPDLTLASDWIYCITDIDPDHRKLSQLEAVVRFLTGMDPGLECDEELVREVLFDAVVTAPMEAYWTALALNISEASEPGVDVAFLGTRAGLLRQSLFVGSEKISDRKFLTPEDEASIFTMDHFPLWYRQASEQPPGSFVFNLRWEEGPDSPGKPVAIRASTSITVTVDGKTAIAAAVGIQMQVDYLQRQFWAAMKQCSTEEGPCPKSCEDTDLDCFIIDNNGFILISERPQEMGRLLGEVDSALMIQLLSTGVFSRVTMYDYQAMCKPPDHHHSAAQALISPLSASLMVVKWLLHEFLLFLLHWSAWGSWHDKGSEAKAVFHHSHKHKKQDLLHPCDTEYPVFVHQTAIQEANGIIECGACQKTFVMQQIPSSNLLLLVTDCTCDCSSYSPILQEATEVKYNASVKCDRMRSQKPRRRPGSCHAFHPEENAQDCGGASDTVASLPLLLLPLWAWLLPYQLLW", "length": 1116, "header": "tr|A0A9J7H6Y2-1|A0A9J7H6Y2_CRIGR Isoform 1 of Voltage-dependent calcium channel subunit alpha-2/delta-4 isoform X2 OS=Cricetulus griseus OX=10029 GN=Cacna2d4 PE=3 SV=1 CANONICAL=A0A9J7H6Y2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GFC9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFC9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GFC9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GFC9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100755076", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755076", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "voltage-gated calcium channel activity", "id": "GO:0005245", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005245", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H6Y2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6Y2" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H6Y2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6Y2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "voltage-gated calcium channel complex", "id": "GO:0005891", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005891", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H6Y2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6Y2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1056, "end_pos": 1058, "annotation": "n_glycosylation_sequon" }, { "start_pos": 137, "end_pos": 139, "annotation": "n_glycosylation_sequon" }, { "start_pos": 180, "end_pos": 182, "annotation": "n_glycosylation_sequon" }, { "start_pos": 498, "end_pos": 500, "annotation": "n_glycosylation_sequon" }, { "start_pos": 643, "end_pos": 645, "annotation": "n_glycosylation_sequon" }, { "start_pos": 725, "end_pos": 727, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7H6Y2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6Y2" }, { "id": "PS50234", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50234" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "VWFA", "eco_id": "ECO_0000259", "start_pos": 270, "end_pos": 452, "start_aa": "Asp", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1056, "end_pos": 1058 }, { "start_pos": 137, "end_pos": 139 }, { "start_pos": 180, "end_pos": 182 }, { "start_pos": 498, "end_pos": 500 }, { "start_pos": 643, "end_pos": 645 }, { "start_pos": 725, "end_pos": 727 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7H8J4-1", "uniprot_ac": "A0A9J7H8J4", "uniprot_id": "A0A9J7H8J4_CRIGR", "mass": { "chemical_mass": 60134.0, "monoisotopic_mass": 60134.0 }, "refseq": { "ac": "XP_035305246", "name": "atypical kinase COQ8B, mitochondrial isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305246" }, "gene_names": [ { "name": "Coq8b", "type": "recommended", "evidence": [ { "id": "A0A9J7H8J4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8J4" } ] }, { "name": "Coq8b", "type": "synonym", "evidence": [ { "id": "XP_035305246", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305246" } ] } ], "protein_names": [ { "name": "Atypical kinase COQ8B, mitochondrial isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7H8J4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8J4/entry#names_and_taxonomy" } ] }, { "name": "atypical kinase COQ8B, mitochondrial isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035305246", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305246" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035305246", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305246" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H8J4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8J4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Coq8b", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8J4", "locus": {} } ], "crossref": [ { "id": "A0A9J7H8J4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H8J4", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd13970", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13970", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100770066", "url": "https://www.ncbi.nlm.nih.gov/gene/100770066", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004147", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004147", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011009", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011009", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034646", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034646", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051409", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051409", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100770066", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770066", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H8J4", "url": "https://www.orthodb.org/?gene=A0A9J7H8J4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR43851", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43851", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43851:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43851:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03109", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03109", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035305246", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305246", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GGS6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGS6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GGS6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGS6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H8J4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8J4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H8J4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8J4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSQPPAVSIPDKKSYVAGTWGRAARGPCTAGQDCTSALGGSGAQAPLGPYRGCRAQSVHQDRPGRGLSEEDIRRAREARLRKAPRPQLSDRARERKVPASRISRLASFGGLAVGLGLGALAEVTKKSLPGGRLQHEGSSSGLGSSPFLSEANAERIVQTLCTVRGAALKIGQMLSIQDNSFISPQLQRIFERVRQSADFMPRWQMLRVLEEELGKDWQDKVASLEEVPFAAASIGQVHQGVLKDGTEVAVKIQYPGVAQSIQSDVQNLLGLLKMSVGLPEGLFAEQSLQSLQQELAWECDYQREAACAQTFRKHLANDPFFRVPAVVPELCTRRVLGMELAGGIPLDQCQGLSQDIRNQICFQLLRLCLRELFEFRFMQTDPNWANFLYDVSSHQVTLLDFGASRAFGTEFTDHYIEVVKAAADGDRDRVLKKSQDLKFLTGFETKAFSDAHVEAVMILGEPFAASGPYDFGAGETARRIQGLIPVLLRHRLRPPPEETYALHRKLAGAFLACARLHAHIACRDLFQDTYHRYWASRQALPLPAAS", "length": 546, "header": "tr|A0A9J7H8J4-1|A0A9J7H8J4_CRIGR Isoform 1 of Atypical kinase COQ8B, mitochondrial isoform X2 OS=Cricetulus griseus OX=10029 GN=Coq8b PE=3 SV=1 CANONICAL=A0A9J7H8J4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GGS6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8J4/entry#A0A9J7GGS6-1", "sequence": { "sequence": "MWLELGAVLRGARAPLGRTAHLPWGALGPRPHWWGPYRGCRAQSVHQDRPGRGLSEEDIRRAREARLRKAPRPQLSDRARERKVPASRISRLASFGGLAVGLGLGALAEVTKKSLPGGRLQHEGSSSGLGSSPFLSEANAERIVQTLCTVRGAALKIGQMLSIQDNSFISPQLQRIFERVRQSADFMPRWQMLRVLEEELGKDWQDKVASLEEVPFAAASIGQVHQGVLKDGTEVAVKIQYPGVAQSIQSDVQNLLGLLKMSVGLPEGLFAEQSLQSLQQELAWECDYQREAACAQTFRKHLANDPFFRVPAVVPELCTRRVLGMELAGGIPLDQCQGLSQDIRNQICFQLLRLCLRELFEFRFMQTDPNWANFLYDVSSHQVTLLDFGASRAFGTEFTDHYIEVVKAAADGDRDRVLKKSQDLKFLTGFETKAFSDAHVEAVMILGEPFAASGPYDFGAGETARRIQGLIPVLLRHRLRPPPEETYALHRKLAGAFLACARLHAHIACRDLFQDTYHRYWASRQALPLPAAS", "length": 533, "header": "tr|A0A9J7GGS6-1|A0A9J7H8J4_CRIGR Computationally mapped isoform of Atypical kinase COQ8B, mitochondrial isoform X2 OS=Cricetulus griseus OX=10029 GN=Coq8b PE=3 SV=1 CANONICAL=A0A9J7H8J4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H8J4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8J4/entry#A0A9J7H8J4-1", "sequence": { "sequence": "MSQPPAVSIPDKKSYVAGTWGRAARGPCTAGQDCTSALGGSGAQAPLGPYRGCRAQSVHQDRPGRGLSEEDIRRAREARLRKAPRPQLSDRARERKVPASRISRLASFGGLAVGLGLGALAEVTKKSLPGGRLQHEGSSSGLGSSPFLSEANAERIVQTLCTVRGAALKIGQMLSIQDNSFISPQLQRIFERVRQSADFMPRWQMLRVLEEELGKDWQDKVASLEEVPFAAASIGQVHQGVLKDGTEVAVKIQYPGVAQSIQSDVQNLLGLLKMSVGLPEGLFAEQSLQSLQQELAWECDYQREAACAQTFRKHLANDPFFRVPAVVPELCTRRVLGMELAGGIPLDQCQGLSQDIRNQICFQLLRLCLRELFEFRFMQTDPNWANFLYDVSSHQVTLLDFGASRAFGTEFTDHYIEVVKAAADGDRDRVLKKSQDLKFLTGFETKAFSDAHVEAVMILGEPFAASGPYDFGAGETARRIQGLIPVLLRHRLRPPPEETYALHRKLAGAFLACARLHAHIACRDLFQDTYHRYWASRQALPLPAAS", "length": 546, "header": "tr|A0A9J7H8J4-1|A0A9J7H8J4_CRIGR Isoform 1 of Atypical kinase COQ8B, mitochondrial isoform X2 OS=Cricetulus griseus OX=10029 GN=Coq8b PE=3 SV=1 CANONICAL=A0A9J7H8J4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGS6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGS6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GGS6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GGS6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100770066", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770066", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H8J4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8J4" } ], "pmid": "" }, { "name": "kinase activity", "id": "GO:0016301", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016301", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H8J4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8J4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "ubiquinone biosynthetic process", "id": "GO:0006744", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006744", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H8J4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8J4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7H8J4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8J4" }, { "id": "PF03109", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03109" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "ABC1 atypical kinase-like", "eco_id": "ECO_0000259", "start_pos": 193, "end_pos": 432, "start_aa": "Val", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7H5K2-1", "uniprot_ac": "A0A9J7H5K2", "uniprot_id": "A0A9J7H5K2_CRIGR", "mass": { "chemical_mass": 60737.0, "monoisotopic_mass": 60737.0 }, "refseq": { "ac": "XP_035305248", "name": "immunity-related GTPase family Q protein isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305248" }, "gene_names": [ { "name": "LOC113837350", "type": "recommended", "evidence": [ { "id": "A0A9J7H5K2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5K2" } ] }, { "name": "LOC113837350", "type": "synonym", "evidence": [ { "id": "XP_035305248", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305248" } ] } ], "protein_names": [ { "name": "Immunity-related GTPase family Q protein isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7H5K2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5K2/entry#names_and_taxonomy" } ] }, { "name": "immunity-related GTPase family Q protein isoform X1", "type": "synonym", "evidence": [ { "id": "XP_035305248", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305248" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035305248", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305248" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H5K2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5K2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113837350", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5K2", "locus": {} } ], "crossref": [ { "id": "A0A9J7H5K2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H5K2", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00267", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00267", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "113837350", "url": "https://www.ncbi.nlm.nih.gov/gene/113837350", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR030385", "url": "https://www.ebi.ac.uk/interpro/entry/IPR030385", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040070", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040070", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113837350", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113837350", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H5K2", "url": "https://www.orthodb.org/?gene=A0A9J7H5K2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR19364", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19364", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19364:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19364:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_035305248", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305248", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GIP3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIP3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GIP3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GIP3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H5K2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5K2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H5K2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5K2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPLRQAMPLPQGDVTALFLGPPGSGKSSLIAALCGKNVDTVEIPEGRPDSQVPSLRAAAPGLFLGELSCPPAAPGPWAAEANLLVLVLPGSEGTEEPLTPALGEAARAALARGTPLLAVRHLRPGDSQNAAQARDQTAELLNRAGLGAAPLFVLPPDCSSSDCCEELERLQVVLRSQAEALQRLLPPAQDGFEVLGAAELEAVREAFETGGLEAALSWVRAGLERLGSARLDLAVAGTANVGLVLDMLLGLDPGDPGAAPAMDPTEPTPYPAPERPNVVLWAVPLGSTALSPATTPHPSHYDALILVTPGAPTEENWAQVRSLVSPDAPLVGVRTDGQGENPPEALEEERAEKLTNASGDGNSGDARSQGKENPGSGGDAGPTAARSPEDEPWEVLEEVPPPVFPLRPSGLPGLGSWLQRALPTAQAGALLLALPPASPGAARRKAAALRAGAWRPALLASLAAAAAPVPGLGWACDVALLRGQLAEWRRALGLEPAAVARRERALGLTPGVLAARTRFPGPVTRAEVEARLGSWAGEGTAGGAALGALSFLWPAGGAAATGGLGYRAAHGVLLQALDEMLADAEAVLGPPEPNQ", "length": 595, "header": "tr|A0A9J7H5K2-1|A0A9J7H5K2_CRIGR Isoform 1 of Immunity-related GTPase family Q protein isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC113837350 PE=3 SV=1 CANONICAL=A0A9J7H5K2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GIP3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5K2/entry#A0A9J7GIP3-1", "sequence": { "sequence": "MPLPQGDVTALFLGPPGSGKSSLIAALCGKNVDTVEIPEGRPDSQVPSLRAAAPGLFLGELSCPPAAPGPWAAEANLLVLVLPGSEGTEEPLTPALGEAARAALARGTPLLAVRHLRPGDSQNAAQARDQTAELLNRAGLGAAPLFVLPPDCSSSDCCEELERLQVVLRSQAEALQRLLPPAQDGFEVLGAAELEAVREAFETGGLEAALSWVRAGLERLGSARLDLAVAGTANVGLVLDMLLGLDPGDPGAAPAMDPTEPTPYPAPERPNVVLWAVPLGSTALSPATTPHPSHYDALILVTPGAPTEENWAQVRSLVSPDAPLVGVRTDGQGENPPEALEEERAEKLTNASGDGNSGDARSQGKENPGSGGDAGPTAARSPEDEPWEVLEEVPPPVFPLRPSGLPGLGSWLQRALPTAQAGALLLALPPASPGAARRKAAALRAGAWRPALLASLAAAAAPVPGLGWACDVALLRGQLAEWRRALGLEPAAVARRERALGLTPGVLAARTRFPGPVTRAEVEARLGSWAGEGTAGGAALGALSFLWPAGGAAATGGLGYRAAHGVLLQALDEMLADAEAVLGPPEPNQ", "length": 589, "header": "tr|A0A9J7GIP3-1|A0A9J7H5K2_CRIGR Computationally mapped isoform of Immunity-related GTPase family Q protein isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC113837350 PE=3 SV=1 CANONICAL=A0A9J7H5K2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H5K2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5K2/entry#A0A9J7H5K2-1", "sequence": { "sequence": "MPLRQAMPLPQGDVTALFLGPPGSGKSSLIAALCGKNVDTVEIPEGRPDSQVPSLRAAAPGLFLGELSCPPAAPGPWAAEANLLVLVLPGSEGTEEPLTPALGEAARAALARGTPLLAVRHLRPGDSQNAAQARDQTAELLNRAGLGAAPLFVLPPDCSSSDCCEELERLQVVLRSQAEALQRLLPPAQDGFEVLGAAELEAVREAFETGGLEAALSWVRAGLERLGSARLDLAVAGTANVGLVLDMLLGLDPGDPGAAPAMDPTEPTPYPAPERPNVVLWAVPLGSTALSPATTPHPSHYDALILVTPGAPTEENWAQVRSLVSPDAPLVGVRTDGQGENPPEALEEERAEKLTNASGDGNSGDARSQGKENPGSGGDAGPTAARSPEDEPWEVLEEVPPPVFPLRPSGLPGLGSWLQRALPTAQAGALLLALPPASPGAARRKAAALRAGAWRPALLASLAAAAAPVPGLGWACDVALLRGQLAEWRRALGLEPAAVARRERALGLTPGVLAARTRFPGPVTRAEVEARLGSWAGEGTAGGAALGALSFLWPAGGAAATGGLGYRAAHGVLLQALDEMLADAEAVLGPPEPNQ", "length": 595, "header": "tr|A0A9J7H5K2-1|A0A9J7H5K2_CRIGR Isoform 1 of Immunity-related GTPase family Q protein isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC113837350 PE=3 SV=1 CANONICAL=A0A9J7H5K2-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], 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}, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7H7U3-1", "uniprot_ac": "A0A9J7H7U3", "uniprot_id": "A0A9J7H7U3_CRIGR", "mass": { "chemical_mass": 81032.0, "monoisotopic_mass": 81032.0 }, "refseq": { "ac": "XP_035306735", "name": "zinc finger protein 800 isoform X4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306735" }, "gene_names": [ { "name": "Znf800", "type": "recommended", "evidence": [ { "id": "A0A9J7H7U3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7U3" } ] }, { "name": "Znf800", "type": "synonym", "evidence": [ { "id": "XP_035306735", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306735" } ] } ], "protein_names": [ { "name": "Zinc finger protein 800 isoform X4", "type": "synonym", "evidence": [ { "id": "A0A9J7H7U3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7U3/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 800 isoform X4", "type": "synonym", "evidence": [ { "id": "XP_035306735", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306735" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035306735", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306735" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H7U3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7U3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Znf800", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7U3", "locus": {} } ], "crossref": [ { "id": "100772711", "url": "https://www.ncbi.nlm.nih.gov/gene/100772711", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039149", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039149", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041697", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041697", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR059121", "url": "https://www.ebi.ac.uk/interpro/entry/IPR059121", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100772711", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772711", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "SSCICHE", "url": "https://omabrowser.org/oma/group/SSCICHE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7H7U3", "url": "https://www.orthodb.org/?gene=A0A9J7H7U3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21020", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21020", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21020:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21020:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16622", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16622", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16624", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16624", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25445", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25445", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035306735", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306735", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2LZC9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LZC9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LZC9-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LZC9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H7U3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7U3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H7U3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7U3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HB16", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HB16", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HB16-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HB16-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPLRDKYCQTDHHHHGCCEPVYALEPGDPPLLQQPLQTSKSGIQQIIECFRSGTKQLKHILLKDVDTIFECKLCRSLFRGLPNLITHKKFYCPPSLQMDDNLPDVNDKQSQAINDLLEAIYPRVDKREYIIKLEPIETNQNAVFQYISRTDNPAEVTESSSTPEQTEVQVQETSTEQPKAVPDTDTEVVEVVAAPPVEIVVDEAAPPTEEQPRESQADLETSDSSDLGHQLICCLCRKEFNSRRGVRRHIRKVHKKKMEELKKYIETQKTPNQTSKGRNKSVLVSLSRSCPVCCKSFATKANVRRHFDEVHRGLRRDSITPDKATKPGQPLFLDPASPKKSFKTRKQKSSKPEYNLTACKCLLCKRKYSSQIMLKRHMQIVHKITLSGANSKREKGPNNTANSSEIKVKVEPADSVESSSPSITHSPQNELKGTNHSNEKKNTPATQKNKVKQDSESPKSASPSAAGGQQKARKPKLSVGFDFKQLYCKLCKRQFTSKQNLTKHIELHTDGNNIYVKFYKCPLCTYETRRKRDVIRHITVVHKKSSRYLGKITASLEIRAIKKPIDFVLNKVAKRGPSRDEAKHNDSNPDGTSNSPSKKYEVADVGIEVKVTKNFSLHRCNKCGKAFAKKTYLEHHKKTHKANATNSPEGNKTKGRSTRSKALVCLAKPSPRSAAILRPPAGAVTTRQAASSCRAKLRGAARERQHPARALGKSAARRRAAP", "length": 722, "header": "tr|A0A9J7H7U3-1|A0A9J7H7U3_CRIGR Isoform 1 of Zinc finger protein 800 isoform X4 OS=Cricetulus griseus OX=10029 GN=Znf800 PE=3 SV=1 CANONICAL=A0A9J7H7U3-1" }, "isoforms": [ { "isoform_ac": "A0A8C2LZC9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7U3/entry#A0A8C2LZC9-1", "sequence": { "sequence": "MPLRDKYCQTDHHHHGCCEPVYALEPGDPPLLQQPLQTSKSGIQQIIECFRSGTKQLKHILLKDVDTIFECKLCRSLFRGLPNLITHKKFYCPPSLQMDDNLPDVNDKQSQAINDLLEAIYPRVDKREYIIKLEPIETNQNAVFQYISRTDNPAEVTESSSTPEQTEVQVQETSTEQPKAVPDTDTEVVEVVAAPPVEIVVDEAAPPTEEQPRESQADLETSDSSDLGHQLICCLCRKEFNSRRGVRRHIRKVHKKKMEELKKYIETQKTPNQTSKGRNKSVLVSLSRSCPVCCKSFATKANVRRHFDEVHRGLRRDSITPDKATKPGQPLFLDPASPKKSFKTRKQKSSKPEYNLTACKCLLCKRKYSSQIMLKRHMQIVHKITLSGANSKREKGPNNTANSSEIKVKVEPADSVESSSPSITHSPQNELKGTNHSNEKKNTPATQKNKVKQDSESPKSASPSAAGGQQKARKPKLSVGFDFKQLYCKLCKRQFTSKQNLTKHIELHTDGNNIYVKFYKCPLCTYETRRKRDVIRHITVVHKKSSRYLGKITASLEIRAIKKPIDFVLNKVAKRGPSRDEAKHNDSNPDGTSNSPSKKYEVADVGIEVKVTKNFSLHRCNKCGKAFAKKTYLEHHKKTHKANATNSPEGNKTKGRSTRSKALV", "length": 664, "header": "tr|A0A8C2LZC9-1|A0A9J7H7U3_CRIGR Computationally mapped isoform of Zinc finger protein 800 isoform X4 OS=Cricetulus griseus OX=10029 GN=Znf800 PE=3 SV=1 CANONICAL=A0A9J7H7U3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H7U3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7U3/entry#A0A9J7H7U3-1", "sequence": { "sequence": "MPLRDKYCQTDHHHHGCCEPVYALEPGDPPLLQQPLQTSKSGIQQIIECFRSGTKQLKHILLKDVDTIFECKLCRSLFRGLPNLITHKKFYCPPSLQMDDNLPDVNDKQSQAINDLLEAIYPRVDKREYIIKLEPIETNQNAVFQYISRTDNPAEVTESSSTPEQTEVQVQETSTEQPKAVPDTDTEVVEVVAAPPVEIVVDEAAPPTEEQPRESQADLETSDSSDLGHQLICCLCRKEFNSRRGVRRHIRKVHKKKMEELKKYIETQKTPNQTSKGRNKSVLVSLSRSCPVCCKSFATKANVRRHFDEVHRGLRRDSITPDKATKPGQPLFLDPASPKKSFKTRKQKSSKPEYNLTACKCLLCKRKYSSQIMLKRHMQIVHKITLSGANSKREKGPNNTANSSEIKVKVEPADSVESSSPSITHSPQNELKGTNHSNEKKNTPATQKNKVKQDSESPKSASPSAAGGQQKARKPKLSVGFDFKQLYCKLCKRQFTSKQNLTKHIELHTDGNNIYVKFYKCPLCTYETRRKRDVIRHITVVHKKSSRYLGKITASLEIRAIKKPIDFVLNKVAKRGPSRDEAKHNDSNPDGTSNSPSKKYEVADVGIEVKVTKNFSLHRCNKCGKAFAKKTYLEHHKKTHKANATNSPEGNKTKGRSTRSKALVCLAKPSPRSAAILRPPAGAVTTRQAASSCRAKLRGAARERQHPARALGKSAARRRAAP", "length": 722, "header": "tr|A0A9J7H7U3-1|A0A9J7H7U3_CRIGR Isoform 1 of Zinc finger protein 800 isoform X4 OS=Cricetulus griseus OX=10029 GN=Znf800 PE=3 SV=1 CANONICAL=A0A9J7H7U3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HB16-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7U3/entry#A0A9J7HB16-1", "sequence": { "sequence": "MPLRDKYCQTDHHHHGCCEPGTKQLKHILLKDVDTIFECKLCRSLFRGLPNLITHKKFYCPPSLQMDDNLPDVNDKQSQAINDLLEAIYPRVDKREYIIKLEPIETNQNAVFQYISRTDNPAEVTESSSTPEQTEVQVQETSTEQPKAVPDTDTEVVEVVAAPPVEIVVDEAAPPTEEQPRESQADLETSDSSDLGHQLICCLCRKEFNSRRGVRRHIRKVHKKKMEELKKYIETQKTPNQTSKGRNKSVLVSLSRSCPVCCKSFATKANVRRHFDEVHRGLRRDSITPDKATKPGQPLFLDPASPKKSFKTRKQKSSKPEYNLTACKCLLCKRKYSSQIMLKRHMQIVHKITLSGANSKREKGPNNTANSSEIKVKVEPADSVESSSPSITHSPQNELKGTNHSNEKKNTPATQKNKVKQDSESPKSASPSAAGGQQKARKPKLSVGFDFKQLYCKLCKRQFTSKQNLTKHIELHTDGNNIYVKFYKCPLCTYETRRKRDVIRHITVVHKKSSRYLGKITASLEIRAIKKPIDFVLNKVAKRGPSRDEAKHNDSNPDGTSNSPSKKYEVADVGIEVKVTKNFSLHRCNKCGKAFAKKTYLEHHKKTHKANATNSPEGNKTKGRSTRSKALVCLAKPSPRSAAILRPPAGAVTTRQAASSCRAKLRGAARERQHPARALGKSAARRRAAP", "length": 690, "header": "tr|A0A9J7HB16-1|A0A9J7HB16_CRIGR Computationally mapped isoform of Zinc finger protein 800 isoform X5 OS=Cricetulus griseus OX=10029 GN=Znf800 PE=3 SV=1 CANONICAL=A0A9J7H7U3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LZC9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LZC9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LZC9", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LZC9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100772711", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772711", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2JY61-1", "protein_name": "Zinc finger protein 800", "gene_name": "Zfp800", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPLRDKYCQTDHHHHGCCEPVYILEPGDPPLLQQPVQTSKSGIQQIIECFRSGTKQLKHILLKDVDTIFECKLCRSLFRGLPNLITHKKFYCPPSLQMDDNLPDVNDKQSQAISDLLEAIYPRVDKREYIIKLEPIETNQNAVFQYISRTDNPAEVTESSSTPEQTEVQIQETSSEQPKAVPEADTEVEEAIEPPPVETVADEATAPTEEQPQESQADLETSDSSDLGHQLICCLCRKEFNSRRGVRRHIRKVHKKKMEELKKYIETRKTPNQSSKGRSKSALVSLSRSCPVCCKSFATKANVRRHFDEVHRGLRRDSITPDIATKPGQPLFLDSASPKKSFKTRKQKSSKAEYNLTACKCLLCKRKYSSQIMLKRHMQIVHKITLSGANSKREKGPNNTANSSEVKVKVEPGDSVESSPPSITHSPQNELKGTNHSNEKKNTPATQKNKVKQDSESPKSASPSAAGGQQKTRKPKLSAGFDFKQLYCKLCKRQFTSKQNLTKHIELHTDGNNIYVKFYKCPLCTYETRRKRDVIRHITVVHKKSSRYLGKITASLEIRAIKKPIDFVLNKVAKRGPSRDEAKHNDSKHDGTSNSPSKKYEVADVGIEVKVTKNFSLHRCNKCGKAFAKKTYLEHHKKTHKANATTSPEGNKTKGRSTRSKALVCLAKPSPRSAAILRPPAGAVTTRQAASSCRAKLRGAARERQHAARALGRSAAP", "length": 717 }, "evidence": [ { "id": "A0A9J7H7U3", "url": "https://omabrowser.org/oma/group/A0A9J7H7U3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A0A4X1W130-1", "protein_name": "Zinc finger protein 800", "gene_name": "ZNF800", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MPLRDKYCQTDHHHHGCCEPVYILEPGDAPLLQQPLQTSKSGIQQIIECFRSGTKQLKHILLKDVDTIFECKLCRSLFRGLPNLITHKKFYCPPSLQMDDNLPDVNDKQSQAINDLLEAIYPSVDKQEYIIKLEPIETNQNAVFQYISRTDNPTEVAESSSTPEQTEVQIQDTSTEQSKTAPVTDTEVETVEPPPVEIVADEVVPTSDEQPQESQADLETSDNSDFGHQLICCLCRKEFNSRRGVRRHIRKVHKKKMEELKKYIETRKNPNQSSKGRSKNVLVPLSRSCPVCCKSFATKANVRRHFDEVHRGLRRDSITPDIATKPGQPLFLDSVSPKKSFKTRKQKSSSKAEYNLTACKCLLCKRKYSSQIMLKRHMQIVHKITLSGTNSKREKGPNNTANSSEIKVKVEPADSVESSPPSITHSPQNELKGTNHSNEKKNTPAAQKNKVKQDSESPKSTSPSAAGGQQKTRKPKLSAGFDFKQLYCKLCKRQFTSKQNLTKHIELHTDGNNIYVKFYKCPLCTYETRRKRDVIRHITVVHKKSSRYLGKITASLEIRAIKKPIDFVLNKVAKRGPSRDEAKHSDAKHDGTSNSPSKKYEVADVGIEVKVTKNFSLHRCNKCGKAFAKKTYLEHHKKTHKANASNSPEGNKTKGRSTRSKALVW", "length": 665 }, "evidence": [ { "id": "A0A9J7H7U3", "url": "https://omabrowser.org/oma/group/A0A9J7H7U3/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8V0X4N6-1", "protein_name": "Zinc finger protein 800", "gene_name": "ZNF800", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MPLRDKCCQTEHHHHGCCEPVHILEPGDPPLLQQPLQTSKSGIQQIIECFRSGTKQLKHILLKDVDTIFECKLCRSLFRGLPNLITHKKFYCPPSLQMDDNLPDINDKQSQAISDLLEAIYPRVDKQEYIVRLEPIETNQNAVFQYVSRTDSPVENTESSSAPDQAPVPIQEPSTEPPKAVSAPAPVGETVELPPADPVTNKTTPVPEEQPPAVTPEVDSLDNSDFGHQLICCLCRKEFHSRRSVRRHIRKVHKKKMEELKKYIETKKKPNLCSAKGRNKNVLVALGRSCPVCYKSFATKANVRRHFDEVHRGLRRDSITPDIATKPGQPLFLDTVSAKKSFKARKQKSSSKAEYNLTACKCLLCKRKYSSQIMLKRHMQIVHKITLSGKNSKREKGPNNTANGTEIKLKVEPADSVEPSPPSIALSPQNELKGTNHSNEKKNTPSAQKNKVKQDSENPKSTSKSTTKSTCKSTTKSTSKSTNASAAGGQQKTRKPKLSAGFDFKQLYCKLCKRQFTSKQNLTKHIELHTDGNNIYVKYYRCPLCSYETRRKRDVIRHITVVHKKSPRYLGKITASLEIRAIKKPIDLVLNKVTKRGPQRDETKQIGSKHDVTSNSPNKKYEGADVGIEVKVTKNFSLHRCNKCGKAFARKAFLEHHKKTHKANVSHSPEENKTKGRSTRSKAIGSSDVRKIWSSFA", "length": 697 }, "evidence": [ { "id": "A0A9J7H7U3", "url": "https://omabrowser.org/oma/group/A0A9J7H7U3/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "E1BPK3-1", "protein_name": "Zinc finger protein 800", "gene_name": "ZNF800", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPLRDKYCQTDHHHHGCCEPVYILEPGDAPLLQQPLQTSKSGIQQIIECFRSGTKQLKHILLKDVDTIFECKLCRSLFRGLPNLITHKKFYCPPSLQMDDNLPDVNDKQSQAINDLLEAIYPSVDKREYIIKLEPIETNQNAVFQYISRTDNPTEVTESSSTPEQPEVQIQETSTEQSKTVPVTDTEVETVEPPPVEIVADDVAPPSDEQPQESQADLETSDNSDFGHQLICCLCRKDFNSRRGVRRHIRKVHKKKMEELKKYIETRKNPNQSTKGRSKNVLVPLSRSCPVCYKSFATKANVRRHFDEVHRGLRRDSITPDIATKPGQPLFLDSVSPKKSFKTRKQKSSSKAEYNLTACKCLLCKRKYSSQIMLKRHMQIVHKITLSGTNSKREKGPNNTASSSEIKVKVEPADSVESSPPSITHSPQNELKGTNHSNEKKNTPAAQKNKVKQDSESPKSTSLSAAGGQQKTRKPKLSAGFDFKQLYCKLCKRQFTSKQNLTKHIELHTDGNNIYVKFYKCPLCTYETRRKRDVIRHITVVHKKSSRYLGKITASLEIRAIKKPIDFVLNKVTKRGPSRDEAKHSDAKHDGTSNSPSKKYEVADVGIEVKVTKNFSLHRCNKCGKAFAKKTYLEHHKKTHKANASNSPEGNKTKGRSTRSKALV", "length": 664 }, "evidence": [ { "id": "A0A9J7H7U3", "url": "https://omabrowser.org/oma/group/A0A9J7H7U3/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q0VEE6-1", "protein_name": "Zinc finger protein 800", "gene_name": "Znf800", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPLRDKYCQTDHHHHGCCEPVYILEPGDPPLLQQPVQTSKSGIQQIIECFRSGTKQLKHILLKDVDTIFECKLCRSLFRGLPNLITHKKFYCPPSLQMDDNLPDVNDKQSQAISDLLEAIYPRVDKREYIIKLEPIETNQNAVFQYISRTDNPAEVTESSSTPEQTEVQIQETSSEQLKAVPDADTEVEEAIEPPSIETVVDEAAAPTEEQPQESQADLETSDSSDLGHQLICCLCRKEFNSRRGVRRHIRKVHKKKMEELKKYIETRKTPNQSSKGRSKSVLVSLSRSCPVCCKSFATKANVRRHFDEVHRGLRRDSITPDIATKPGQPLFLDSASPKKSFKTRKQKSSKAEYNLTACKCLLCKRKYSSQIMLKRHMQIVHKITLSGANSKREKGPNNTANSSEVKVELADSVESSPPSITHSPQNELKGTNHSNEKKNTPATQKNKVKQDSESPKSASPSAAGGQQKTRKPKLSAGFDFKQLYCKLCKRQFTSKQNLTKHIELHTDGNNIYVKFYKCPLCTYETRRKRDVIRHITVVHKKSSRYLGKITASLEIRAIKKPIDFVLNKVAKRGPSREEAKHNDSKQDGTSNSPSKKYEVADVGIEVKVTKNFSLHRCNKCGKAFAKKTYLEHHKKTHKANATNSPEGNKTKGRSTRSKALV", "length": 662 }, "evidence": [ { "id": "A0A9J7H7U3", "url": "https://omabrowser.org/oma/group/A0A9J7H7U3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q2TB10-1", "protein_name": "Zinc finger protein 800", "gene_name": "ZNF800", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPLRDKYCQTDHHHHGCCEPVYILEPGDPPLLQQPLQTSKSGIQQIIECFRSGTKQLKHILLKDVDTIFECKLCRSLFRGLPNLITHKKFYCPPSLQMDDNLPDVNDKQSQAINDLLEAIYPSVDKREYIIKLEPIETNQNAVFQYISRTDNPIEVTESSSTPEQTEVQIQETSTEQSKTVPVTDTEVETVEPPPVEIVTDEVAPTSDEQPQESQADLETSDNSDFGHQLICCLCRKEFNSRRGVRRHIRKVHKKKMEELKKYIETRKNPNQSSKGRSKNVLVPLSRSCPVCCKSFATKANVRRHFDEVHRGLRRDSITPDIATKPGQPLFLDSISPKKSFKTRKQKSSSKAEYNLTACKCLLCKRKYSSQIMLKRHMQIVHKITLSGTNSKREKGPNNTANSSEIKVKVEPADSVESSPPSITHSPQNELKGTNHSNEKKNTPAAQKNKVKQDSESPKSTSPSAAGGQQKTRKPKLSAGFDFKQLYCKLCKRQFTSKQNLTKHIELHTDGNNIYVKFYKCPLCTYETRRKRDVIRHITVVHKKSSRYLGKITASLEIRAIKKPIDFVLNKVAKRGPSRDEAKHSDSKHDGTSNSPSKKYEVADVGIEVKVTKNFSLHRCNKCGKAFAKKTYLEHHKKTHKANASNSPEGNKTKGRSTRSKALV", "length": 664 }, "evidence": [ { "id": "A0A9J7H7U3", "url": "https://omabrowser.org/oma/group/A0A9J7H7U3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H7U3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7U3" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H7U3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7U3" } ], "pmid": "" }, { "name": "DNA-binding transcription repressor activity, RNA polymerase II-specific", "id": "GO:0001227", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001227", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H7U3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7U3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H7U3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7U3" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H7U3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7U3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H7U3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7U3" } ], "pmid": "" }, { "name": "cell differentiation", "id": "GO:0030154", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030154", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H7U3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7U3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 272, "end_pos": 274, "annotation": "n_glycosylation_sequon" }, { "start_pos": 279, "end_pos": 281, "annotation": "n_glycosylation_sequon" }, { "start_pos": 355, "end_pos": 357, "annotation": "n_glycosylation_sequon" }, { "start_pos": 398, "end_pos": 400, "annotation": "n_glycosylation_sequon" }, { "start_pos": 402, "end_pos": 404, "annotation": "n_glycosylation_sequon" }, { "start_pos": 435, "end_pos": 437, "annotation": "n_glycosylation_sequon" }, { "start_pos": 500, "end_pos": 502, "annotation": "n_glycosylation_sequon" }, { "start_pos": 585, "end_pos": 587, "annotation": "n_glycosylation_sequon" }, { "start_pos": 614, "end_pos": 616, "annotation": "n_glycosylation_sequon" }, { "start_pos": 643, "end_pos": 645, "annotation": "n_glycosylation_sequon" }, { "start_pos": 651, "end_pos": 653, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7H7U3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7U3" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 231, "end_pos": 259, "start_aa": "Leu", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 272, "end_pos": 274 }, { "start_pos": 279, "end_pos": 281 }, { "start_pos": 355, "end_pos": 357 }, { "start_pos": 398, "end_pos": 400 }, { "start_pos": 402, "end_pos": 404 }, { "start_pos": 435, "end_pos": 437 }, { "start_pos": 500, "end_pos": 502 }, { "start_pos": 585, "end_pos": 587 }, { "start_pos": 614, "end_pos": 616 }, { "start_pos": 643, "end_pos": 645 }, { "start_pos": 651, "end_pos": 653 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7H565-1", "uniprot_ac": "A0A9J7H565", "uniprot_id": "A0A9J7H565_CRIGR", "mass": { "chemical_mass": 35325.0, "monoisotopic_mass": 35325.0 }, "refseq": { "ac": "XP_035303294", "name": "meteorin isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303294" }, "gene_names": [ { "name": "Metrn", "type": "recommended", "evidence": [ { "id": "A0A9J7H565", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H565" } ] }, { "name": "Metrn", "type": "synonym", "evidence": [ { "id": "XP_035303294", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303294" } ] } ], "protein_names": [ { "name": "Meteorin isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7H565", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H565/entry#names_and_taxonomy" } ] }, { "name": "meteorin isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035303294", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303294" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035303294", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303294" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H565", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H565" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Metrn", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H565", "locus": {} } ], "crossref": [ { "id": "A0A9J7H565", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H565", "database": "AlphaFoldDB", "categories": [] }, { "id": "103159155", "url": "https://www.ncbi.nlm.nih.gov/gene/103159155", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR051998", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051998", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:103159155", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103159155", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H565", "url": "https://www.orthodb.org/?gene=A0A9J7H565", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR28593", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28593", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR28593:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28593:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF27640", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27640", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035303294", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303294", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QC99", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QC99", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QC99-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QC99-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H565", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H565", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H565-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H565-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSVAALLCALCFGLLATSSRAGYSKDRCSWRGSGLTQEPGSVGQLTLYCTEGAIEWLYPAGALRLTLGSPDPGTQPSIVCLRPSRPFAGAQVFAERMGGNLELLLAEGPDLAGGRCIRWGPRERRALFLQATPHRDISRRVAAFRFELHKDQHAEMPPQAQGLGVDGACRPCSDAELLLAACTSDFGLPTTWSCKNQSSLWWPPVSSARHCHCSRKRAQRARARARPPFVPRCAVVCVLAQALSFSWAGADLVKPGWAVLPAFKSSAVSIQLPLKPTSTHVRWHWTERPGSKPPSELLLGMGEQVMKAPKVEAETAKGMVVCEQVD", "length": 326, "header": "tr|A0A9J7H565-1|A0A9J7H565_CRIGR Isoform 1 of Meteorin isoform X2 OS=Cricetulus griseus OX=10029 GN=Metrn PE=3 SV=1 CANONICAL=A0A9J7H565-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QC99-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H565/entry#A0A8C2QC99-1", "sequence": { "sequence": "MSVAALLCALCFGLLATSSRAGYSKDRCSWRGSGLTQEPGSVGQLTLYCTEGAIEWLYPAGALRLTLGSPDPGTQPSIVCLRPSRPFAGAQVFAERMGGNLELLLAEGPDLAGGRCIRWGPRERRALFLQATPHRDISRRVAAFRFELHKDQHAEMPPQAQGLGVDGACRPCSDAELLLAACTSDFVIHGTIHRVAHDMELQESVITVVATRVIRQTLPLFQEEGSEGQGQGQASIRTPLRCGVRPGPGSFLFMGWSRFGEAWLGCAPRFQEFSRVYSAALKAHLNPCEVALD", "length": 293, "header": "tr|A0A8C2QC99-1|A0A9J7H565_CRIGR Computationally mapped isoform of Meteorin isoform X2 OS=Cricetulus griseus OX=10029 GN=Metrn PE=3 SV=1 CANONICAL=A0A9J7H565-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H565-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H565/entry#A0A9J7H565-1", "sequence": { "sequence": "MSVAALLCALCFGLLATSSRAGYSKDRCSWRGSGLTQEPGSVGQLTLYCTEGAIEWLYPAGALRLTLGSPDPGTQPSIVCLRPSRPFAGAQVFAERMGGNLELLLAEGPDLAGGRCIRWGPRERRALFLQATPHRDISRRVAAFRFELHKDQHAEMPPQAQGLGVDGACRPCSDAELLLAACTSDFGLPTTWSCKNQSSLWWPPVSSARHCHCSRKRAQRARARARPPFVPRCAVVCVLAQALSFSWAGADLVKPGWAVLPAFKSSAVSIQLPLKPTSTHVRWHWTERPGSKPPSELLLGMGEQVMKAPKVEAETAKGMVVCEQVD", "length": 326, "header": "tr|A0A9J7H565-1|A0A9J7H565_CRIGR Isoform 1 of Meteorin isoform X2 OS=Cricetulus griseus OX=10029 GN=Metrn PE=3 SV=1 CANONICAL=A0A9J7H565-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QC99", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QC99" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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"evidence": [ { "database": "UniProtKB", "id": "A0A9J7H565", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H565" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "positive regulation of axonogenesis", "id": "GO:0050772", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050772", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H565", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H565" } ], "pmid": "" }, { "name": "glial cell differentiation", "id": "GO:0010001", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010001", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H565", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H565" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 196, "end_pos": 198, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": 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{ "name": "Mpp2", "type": "synonym", "evidence": [ { "id": "XP_035303922", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303922" } ] } ], "protein_names": [ { "name": "MAGUK p55 subfamily member 2 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_035303922", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303922" }, { "id": "A0A9J7H7C5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7C5/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035303922", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303922" } ] }, { "annotation": "Postsynaptic MAGUK scaffold protein that links CADM1 cell adhesion molecules to core components of the postsynaptic density. In CA1 pyramidal neurons, required for synaptic KCNN2-containing channel function and long-term potentiation expression. Seems to negatively regulate SRC function in epithelial cells.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H491", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H491#function" }, { "database": "UniProtKB", "id": "ARBA00054812", "url": "https://www.uniprot.org/uniprotkb/ARBA00054812#function" }, { "database": "UniProtKB", "id": "A0A8C2LL90", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LL90#function" }, { "database": "UniProtKB", "id": "A0A8C2LH50", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LH50#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H7C5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7C5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Mpp2", "url": 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"XP_035303922", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303922", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2LH50", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LH50", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LH50-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LH50-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LL90", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LL90", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LL90-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LL90-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H491", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H491", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H491-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H491-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H7C5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7C5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H7C5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7C5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPVAATNSESAMQQVLDNLGSLPNATGAAELDLIFLRGIMESPIVRSLAKVWCMGEHVCVPYKYMLKPYGAHERLEETKLEAVRDNNLELVQEILRDLAQLAEQSSTAAELARILQEPHFQSLLETHDSVASKTYETPPPSPGLDPTFSNQPVPPDAVRMVGIRKTAGEHLGVTFRVEGGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPVGSDPRALQELLRSASGSVILKILPSYQEPHLPRQVFVKCHFDYDPARDSLIPCKEAGLRFNAGDLLQIVNQDDANWWQACHVEGGSAGLIPSQLLEEKRKAFVKRDLELTPTSGTLCGSLSGKKKKRMMYLTTKNAEFDRHELLIYEEVARMPPFRRKTLVLIGAQGVGRRSLKNKLILWDPDRYGTTVPYTSRRPKDTEREGQAYSFVSRGEMESDIRAGRYLEHGEYEGNLYGTRIDSIRGVVASGKVCVLDVNPQAVKVLRTAEFVPYVVFIEAPDFETLRAMNRAALESGVSTKQLTEADLRRTVEESSRIQRGYGHYFDLSLVNSNLERTFRELQAAMEKLRTEPQWVPVSWVY", "length": 572, "header": "tr|A0A9J7H7C5-1|A0A9J7H7C5_CRIGR Isoform 1 of MAGUK p55 subfamily member 2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Mpp2 PE=3 SV=1 CANONICAL=A0A9J7H7C5-1" }, "isoforms": [ { "isoform_ac": "A0A8C2LH50-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7C5/entry#A0A8C2LH50-1", "sequence": { "sequence": "MPVAATNSESAMQQVLDNLGSLPNATGAAELDLIFLRGIMESPIVRSLAKAHERLEETKLEAVRDNNLELVQEILRDLAQLAEQSSTAAELARILQEPHFQSLLETHDSVASKTYETPPPSPGLDPTFSNQPVPPDAVRMVGIRKTAGEHLGVTFRVEGGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPVGSDPRALQELLRSASGSVILKILPSYQEPHLPRQVFVKCHFDYDPARDSLIPCKEAGLRFNAGDLLQIVNQDDANWWQACHVEGGSAGLIPSQLLEEKRKAFVKRDLELTPTSGTLCGSLSGKKKKRMMYLTTKNAEFDRHELLIYEEVARMPPFRRKTLVLIGAQGVGRRSLKNKLILWDPDRYGTTVPYTSRRPKDTEREGQAYSFVSRGEMESDIRAGRYLEHGEYEGNLYGTRIDSIRGVVASGKVCVLDVNPQAVKVLRTAEFVPYVVFIEAPDFETLRAMNRAALESGVSTKQLTEADLRRTVEESSRIQRGYGHYFDLSLVNSNLERTFRELQAAMEKLRTEPQWVPVSWVY", "length": 552, "header": "tr|A0A8C2LH50-1|A0A8C2LH50_CRIGR Computationally mapped isoform of MAGUK p55 subfamily member 2 OS=Cricetulus griseus OX=10029 GN=Mpp2 PE=3 SV=1 CANONICAL=A0A9J7H7C5-1" }, "locus": {} }, { "isoform_ac": "A0A8C2LL90-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7C5/entry#A0A8C2LL90-1", "sequence": { "sequence": "MACSPGSGASLEGISLGSSEEAELCREAMQQVLDNLGSLPNATGAAELDLIFLRGIMESPIVRSLAKAHERLEETKLEAVRDNNLELVQEILRDLAQLAEQSSTAAELARILQEPHFQSLLETHDSVASKTYETPPPSPGLDPTFSNQPVPPDAVRMVGIRKTAGEHLGVTFRVEGGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPVGSDPRALQELLRSASGSVILKILPSYQEPHLPRQVFVKCHFDYDPARDSLIPCKEAGLRFNAGDLLQIVNQDDANWWQACHVEGGSAGLIPSQLLEEKRKAFVKRDLELTPTSGTLCGSLSGKKKKRMMYLTTKNAEFDRHELLIYEEVARMPPFRRKTLVLIGAQGVGRRSLKNKLILWDPDRYGTTVPYTSRRPKDTEREGQAYSFVSRGEMESDIRAGRYLEHGEYEGNLYGTRIDSIRGVVASGKVCVLDVNPQAVKVLRTAEFVPYVVFIEAPDFETLRAMNRAALESGVSTKQLTEADLRRTVEESSRIQRGYGHYFDLSLVNSNLERTFRELQAAMEKLRTEPQWVPVSWVY", "length": 569, "header": "tr|A0A8C2LL90-1|A0A8C2LL90_CRIGR Computationally mapped isoform of MAGUK p55 subfamily member 2 OS=Cricetulus griseus OX=10029 GN=Mpp2 PE=3 SV=1 CANONICAL=A0A9J7H7C5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H491-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7C5/entry#A0A9J7H491-1", "sequence": { "sequence": "MQQVLDNLGSLPNATGAAELDLIFLRGIMESPIVRSLAKAHERLEETKLEAVRDNNLELVQEILRDLAQLAEQSSTAAELARILQEPHFQSLLETHDSVASKTYETPPPSPGLDPTFSNQPVPPDAVRMVGIRKTAGEHLGVTFRVEGGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPVGSDPRALQELLRSASGSVILKILPSYQEPHLPRQRVDALSVHSLDSSQIPGAQVFVKCHFDYDPARDSLIPCKEAGLRFNAGDLLQIVNQDDANWWQACHVEGGSAGLIPSQLLEEKRKAFVKRDLELTPTSGTLCGSLSGKKKKRMMYLTTKNAEFDRHELLIYEEVARMPPFRRKTLVLIGAQGVGRRSLKNKLILWDPDRYGTTVPYTSRRPKDTEREGQAYSFVSRGEMESDIRAGRYLEHGEYEGNLYGTRIDSIRGVVASGKVCVLDVNPQAVKVLRTAEFVPYVVFIEAPDFETLRAMNRAALESGVSTKQLTEADLRRTVEESSRIQRGYGHYFDLSLVNSNLERTFRELQAAMEKLRTEPQWVPVSWVY", "length": 560, "header": "tr|A0A9J7H491-1|A0A9J7H7C5_CRIGR Computationally mapped isoform of MAGUK p55 subfamily member 2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Mpp2 PE=3 SV=1 CANONICAL=A0A9J7H7C5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H7C5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7C5/entry#A0A9J7H7C5-1", "sequence": { "sequence": "MPVAATNSESAMQQVLDNLGSLPNATGAAELDLIFLRGIMESPIVRSLAKVWCMGEHVCVPYKYMLKPYGAHERLEETKLEAVRDNNLELVQEILRDLAQLAEQSSTAAELARILQEPHFQSLLETHDSVASKTYETPPPSPGLDPTFSNQPVPPDAVRMVGIRKTAGEHLGVTFRVEGGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPVGSDPRALQELLRSASGSVILKILPSYQEPHLPRQVFVKCHFDYDPARDSLIPCKEAGLRFNAGDLLQIVNQDDANWWQACHVEGGSAGLIPSQLLEEKRKAFVKRDLELTPTSGTLCGSLSGKKKKRMMYLTTKNAEFDRHELLIYEEVARMPPFRRKTLVLIGAQGVGRRSLKNKLILWDPDRYGTTVPYTSRRPKDTEREGQAYSFVSRGEMESDIRAGRYLEHGEYEGNLYGTRIDSIRGVVASGKVCVLDVNPQAVKVLRTAEFVPYVVFIEAPDFETLRAMNRAALESGVSTKQLTEADLRRTVEESSRIQRGYGHYFDLSLVNSNLERTFRELQAAMEKLRTEPQWVPVSWVY", "length": 572, "header": "tr|A0A9J7H7C5-1|A0A9J7H7C5_CRIGR Isoform 1 of MAGUK p55 subfamily member 2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Mpp2 PE=3 SV=1 CANONICAL=A0A9J7H7C5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H491", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H491" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H491", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H491" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100752145", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752145", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A287AGU8-1", "protein_name": "MAGUK p55 scaffold protein 2", "gene_name": "MPP2", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MPVAATNSETAMQQVLDNLGSLPNATGAAELDLIFLRGIMESPIVRSLAKAHERLEETKLEAVRDNNLELVQEILRDLAQLAEQSSTAAELARILQEPHFQSLLETHDSVASKTYETPPPSPGLDPTFSNQPVPPDAVRMVGIRKTAGEHLGVTFRVEGGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPVGSDPRALQELLRSASGSVILKILPSYQEPHLPRQVFVKCHFDYDPARDSLIPCKEAGLRFSAGDLLQIVNQDDANWWQACHVEGGSAGLIPSQLLEEKRKAFVKRDLELTPNSGTLCGSLSGKKKKRMMYLTTKNAEFDRHELLIYEEVARMPPFRRKTLVLIGAQGVGRRSLKNKLIMWDPDRYGTTVPYTSRRPKDSEREGQGYSFVSRAEMEADIRAGRYLEHGEYEGNLYGTRIDSIRGVVAAGRVCVLDVNPQAVKVLRTAEFVPYVVFIEAPDFETLRAMNRAALESGVSTKQLTEADLRRTVEESSRIQRGYGHYFDLSLVNSNLERTFRELQAAMEKLRTEPQWVPVSWVY", "length": 552 }, "evidence": [ { "id": "A0A9J7H7C5", "url": "https://omabrowser.org/oma/group/A0A9J7H7C5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "D3ZAA9-1", "protein_name": "MAGUK p55 subfamily member 2", "gene_name": "Mpp2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MPVAATNSESAMQQVLDNLGSLPNATGAAELDLIFLRGIMESPIVRSLAKAHERLEETKLEAVRDNNLELVQEILRDLAELAEQSSTAAELARILQEPHFQSLLETHDSVASKTYETPPPSPGLDPTFSNQPVPPDAVRMVGIRKTAGEHLGVTFRVEGGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPVGSDPRALQELLRSASGSVILKILPSYQEPHLPRQVFVKCHFDYDPARDSLIPCKEAGLRFNAGDLLQIVNQDDANWWQACHVEGGSAGLIPSQLLEEKRKAFVKRDLELTPTSGTLCGSLSGKKKKRMMYLTTKNAEFDRHELLIYEEVARMPPFRRKTLVLIGAQGVGRRSLKNKLILWDPDRYGTTVPYTSRRPKDSEREGQGYSFVSRGEMEADIRAGRYLEHGEYEGNLYGTRIDSIRGVVASGKVCVLDVNPQAVKVLRTAEFVPYVVFIEAPDFETLRAMNRAALESGVSTKQLTEADLRRTVEESSRIQRGYGHYFDLSLVNSNLERTFRELQTAMEKLRTEPQWVPVSWVY", "length": 552 }, "evidence": [ { "id": "A0A9J7H7C5", "url": "https://omabrowser.org/oma/group/A0A9J7H7C5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q14168-1", "protein_name": "MAGUK p55 subfamily member 2", "gene_name": "MPP2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MPVAATNSETAMQQVLDNLGSLPSATGAAELDLIFLRGIMESPIVRSLAKVIMVLWFMQQNVFVPMKYMLKYFGAHERLEETKLEAVRDNNLELVQEILRDLAHVAEQSSTAAELAHILQEPHFQSLLETHDSVASKTYETPPPSPGLDPTFSNQPVPPDAVRMVGIRKTAGEHLGVTFRVEGGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPVGSDPRALQELLRNASGSVILKILPSYQEPHLPRQVFVKCHFDYDPARDSLIPCKEAGLRFNAGDLLQIVNQDDANWWQACHVEGGSAGLIPSQLLEEKRKAFVKRDLELTPNSGTLCGSLSGKKKKRMMYLTTKNAEFDRHELLIYEEVARMPPFRRKTLVLIGAQGVGRRSLKNKLIMWDPDRYGTTVPYTSRRPKDSEREGQGYSFVSRGEMEADVRAGRYLEHGEYEGNLYGTRIDSIRGVVAAGKVCVLDVNPQAVKVLRTAEFVPYVVFIEAPDFETLRAMNRAALESGISTKQLTEADLRRTVEESSRIQRGYGHYFDLCLVNSNLERTFRELQTAMEKLRTEPQWVPVSWVY", "length": 576 }, "evidence": [ { "id": "A0A9J7H7C5", "url": "https://omabrowser.org/oma/group/A0A9J7H7C5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9WV34-1", "protein_name": "MAGUK p55 subfamily member 2", "gene_name": "Mpp2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MPVAATNSESAMQQVLDNLGSLPNATGAAELDLIFLRGIMESPIVRSLAKAHERLEETKLEAVRDNNLELVQEILRDLAELAEQSSTAAELARILQEPHFQSLLETHDSVASKTYETPPPSPGLDPTFSNQPVPPDAVRMVGIRKTAGEHLGVTFRVEGGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPVGSDPRALQELLRSASGSVILKILPSYQEPHLPRQVFVKCHFDYDPARDSLSPCKEAGLRFNAGDLLQIVNQDDANWWQACHVEGGSAGLIPSQLLEEKRKAFVKRDLELTPTSGTLCGSLSGKKKKRMMYLTTKNAEFDRHELLIYEEVARMPPFRRKTLVLIGAQGVGRRSLKNKLILWDPDRYGTTVPYTSRRPKDSEREGQGYSFVSRGEMEADIRAGRYLEHGEYEGNLYGTRIDSIRGVVASGKVCVLDVNPQAVKVLRTAEFVPYVVFIEAPDYETLRAMNRAALESGVSTKQLTEADLRRTVEESSRIQRGYGHYFDLSLVNSNLERTFRELQTAMEKLRTEPQWVPVSWVY", "length": 552 }, "evidence": [ { "id": "A0A9J7H7C5", "url": "https://omabrowser.org/oma/group/A0A9J7H7C5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 8, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H7C5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7C5" } ], "pmid": "" }, { "name": "organelle", "id": "GO:0043226", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043226", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H7C5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7C5" } ], "pmid": "" }, { "name": "glutamatergic synapse", "id": "GO:0098978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098978", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H7C5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7C5" } ], "pmid": "" }, { "name": "dendritic spine", "id": "GO:0043197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043197", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H7C5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7C5" } ], "pmid": "" }, { "name": "dendritic shaft", "id": "GO:0043198", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043198", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H7C5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7C5" } ], "pmid": "" }, { "name": "dendrite membrane", "id": "GO:0032590", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032590", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H7C5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7C5" } ], "pmid": "" }, { "name": "postsynaptic density membrane", "id": "GO:0098839", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098839", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H7C5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7C5" } ], "pmid": "" }, { "name": "Schaffer collateral - CA1 synapse", "id": "GO:0098685", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098685", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H7C5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7C5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "structural constituent of postsynaptic density", "id": "GO:0098919", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098919", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H7C5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7C5" } ], "pmid": "" }, { "name": "transmembrane transporter binding", "id": "GO:0044325", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044325", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H7C5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7C5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "excitatory postsynaptic potential", "id": "GO:0060079", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060079", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H7C5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7C5" } ], "pmid": "" }, { "name": "long-term synaptic potentiation", "id": "GO:0060291", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060291", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H7C5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7C5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 24, "end_pos": 26, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7H7C5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7C5" }, { "id": "PS50052", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50052" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Guanylate kinase-like", "eco_id": "ECO_0000259", "start_pos": 370, "end_pos": 557, "start_aa": "Arg", "end_aa": "Glu", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7H7C5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7C5" }, { "id": "PS51022", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51022" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "L27", "eco_id": "ECO_0000259", "start_pos": 80, "end_pos": 138, "start_aa": "Leu", "end_aa": "Pro", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7H7C5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7C5" }, { "id": "PS50106", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50106" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PDZ", "eco_id": "ECO_0000259", "start_pos": 160, "end_pos": 239, "start_aa": "Met", "end_aa": "Tyr", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7H7C5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7C5" }, { "id": "PS50002", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50002" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SH3", "eco_id": "ECO_0000259", "start_pos": 245, "end_pos": 313, "start_aa": "Pro", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 24, "end_pos": 26 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7HCE7-1", "uniprot_ac": "A0A9J7HCE7", "uniprot_id": "A0A9J7HCE7_CRIGR", "mass": { "chemical_mass": 53272.0, "monoisotopic_mass": 53272.0 }, "refseq": { "ac": "XP_035308212", "name": "major facilitator superfamily domain-containing protein 10 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308212" }, "gene_names": [ { "name": "Mfsd10", "type": "recommended", "evidence": [ { "id": "A0A9J7HCE7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCE7" } ] }, { "name": "Mfsd10", "type": "synonym", "evidence": [ { "id": "XP_035308212", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308212" } ] } ], "protein_names": [ { "name": "Major facilitator superfamily domain-containing protein 10 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7HCE7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCE7/entry#names_and_taxonomy" } ] }, { "name": "major facilitator superfamily domain-containing protein 10 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_035308212", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308212" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035308212", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308212" } ] }, { "annotation": "Probable organic anion transporter which may serve as a transporter for some non-steroidal anti-inflammatory drugs (NSAIDs) as well as other organic anions across the luminal membranes of renal proximal tubules at the final excretion step into the urine.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HAB7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAB7#function" }, { "database": "UniProtKB", "id": "ARBA00058620", "url": "https://www.uniprot.org/uniprotkb/ARBA00058620#function" }, { "database": "UniProtKB", "id": "A0A9J7HDB4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDB4#function" }, { "database": "UniProtKB", "id": "A0A9J7J1K4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J1K4#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCE7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCE7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Mfsd10", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCE7", "locus": {} } ], "crossref": [ { "id": "100767880", "url": "https://www.ncbi.nlm.nih.gov/gene/100767880", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001958", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001958", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011701", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011701", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020846", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020846", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036259", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036259", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100767880", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767880", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HCE7", "url": "https://www.orthodb.org/?gene=A0A9J7HCE7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23504", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23504", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23504:SF31", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23504:SF31", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07690", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07690", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035308212", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308212", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HAB7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAB7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HAB7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAB7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HCE7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCE7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HCE7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCE7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HDB4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDB4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HDB4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDB4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J1K4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J1K4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J1K4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J1K4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KE04", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KE04", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KE04-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KE04-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KF10", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KF10", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KF10-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KF10-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGRGYRLHTASAYTTSACVRAPRGHRDLPRPATRPPGLHAVATSAARTPGEPWARTRPPLWLLAARGRLVCHSHRDASREKVQQCPVWRISIHIAKAISEDDLCLSGLIGSAFSLLQFFSAPLTGAASDCLGRRPVMLLCLASTHWQTGMAISYAVWAASRSFKAFLASRVIGGISKGNVSLSTAIVADLGSPPTRSQGMAVIGVAFSLAFTVGPMLGAFLSVEMVPWISLLFAVSDMLFIFCFLPETLPQEKRAPSVTLGFHAAANLLSPLALLRFAAVTHHQDPPAEDRLRSLRRLGLVYFLYLFLFSGLEYTLSFLVHQRFQFSSWWPRGLGAHPPPPSLQQGKMFFFIGLTMATIQGTYARRISPGKEVAAVKQAMLLLVPAFLFIGWGHSLPMLGLGLLLYSFAAAVVVPGLSTLVSSYGSPGQKGTIMGILRSLGALGRALGPMVAASVFWLAGARVCFTVCAGLFLLPFFLLRNLRHPAQTFKEE", "length": 492, "header": "tr|A0A9J7HCE7-1|A0A9J7HCE7_CRIGR Isoform 1 of Major facilitator superfamily domain-containing protein 10 isoform X1 OS=Cricetulus griseus OX=10029 GN=Mfsd10 PE=4 SV=1 CANONICAL=A0A9J7HCE7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HAB7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCE7/entry#A0A9J7HAB7-1", "sequence": { "sequence": "MGWAGDTGCTPRPPIRPRPVSERRVVTVIFLGLLLDLLAFTLLLPLLPGLLENHGREQDPLYGSWQRGVDWFATVIGMPAEKRYNSVLFGGLIGSAFSLLQFFSAPLTGAASDCLGRRPVMLLCLASTHWQTGMAISYAVWAASRSFKAFLASRVIGGISKGNVSLSTAIVADLGSPPTRSQGMAVIGVAFSLAFTVGPMLGAFLSVEMVPWISLLFAVSDMLFIFCFLPETLPQEKRAPSVTLGFHAAANLLSPLALLRFAAVTHHQDPPAEDRLRSLRRLGLVYFLYLFLFSGLEYTLSFLVHQRFQFSSWWPRGLGAHPPPPSLQQGKMFFFIGLTMATIQGTYARRISPGKEVAAVKQAMLLLVPAFLFIGWGHSLPMLGLGLLLYSFAAAVVVPGLSTLVSSYGSPGQKGTIMGILRSLGALGRALGPMVAASVFWLAGARVCFTVCAGLFLLPFFLLRNLRHPAQTFKEE", "length": 476, "header": "tr|A0A9J7HAB7-1|A0A9J7HCE7_CRIGR Computationally mapped isoform of Major facilitator superfamily domain-containing protein 10 isoform X1 OS=Cricetulus griseus OX=10029 GN=Mfsd10 PE=4 SV=1 CANONICAL=A0A9J7HCE7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HCE7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCE7/entry#A0A9J7HCE7-1", "sequence": { "sequence": "MGRGYRLHTASAYTTSACVRAPRGHRDLPRPATRPPGLHAVATSAARTPGEPWARTRPPLWLLAARGRLVCHSHRDASREKVQQCPVWRISIHIAKAISEDDLCLSGLIGSAFSLLQFFSAPLTGAASDCLGRRPVMLLCLASTHWQTGMAISYAVWAASRSFKAFLASRVIGGISKGNVSLSTAIVADLGSPPTRSQGMAVIGVAFSLAFTVGPMLGAFLSVEMVPWISLLFAVSDMLFIFCFLPETLPQEKRAPSVTLGFHAAANLLSPLALLRFAAVTHHQDPPAEDRLRSLRRLGLVYFLYLFLFSGLEYTLSFLVHQRFQFSSWWPRGLGAHPPPPSLQQGKMFFFIGLTMATIQGTYARRISPGKEVAAVKQAMLLLVPAFLFIGWGHSLPMLGLGLLLYSFAAAVVVPGLSTLVSSYGSPGQKGTIMGILRSLGALGRALGPMVAASVFWLAGARVCFTVCAGLFLLPFFLLRNLRHPAQTFKEE", "length": 492, "header": "tr|A0A9J7HCE7-1|A0A9J7HCE7_CRIGR Isoform 1 of Major facilitator superfamily domain-containing protein 10 isoform X1 OS=Cricetulus griseus OX=10029 GN=Mfsd10 PE=4 SV=1 CANONICAL=A0A9J7HCE7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HDB4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCE7/entry#A0A9J7HDB4-1", "sequence": { "sequence": "MGWAGDTGCTPRPPIRPRPVSERRVVTVIFLGLLLDLLAFTLLLPLLPGLLENHGREQDPLYGSWQRGVDWFATVIGMPAEKRYNSVLFGGLIGSAFSLLQFFSAPLTGAASDCLGRRPVMLLCLTGMAISYAVWAASRSFKAFLASRVIGGISKGNVSLSTAIVADLGSPPTRSQGMAVIGVAFSLAFTVGPMLGAFLSVEMVPWISLLFAVSDMLFIFCFLPETLPQEKRAPSVTLGFHAAANLLSPLALLRFAAVTHHQDPPAEDRLRSLRRLGLVYFLYLFLFSGLEYTLSFLVHQRFQFSSWWPRGLGAHPPPPSLQQGKMFFFIGLTMATIQGTYARRISPGKEVAAVKQAMLLLVPAFLFIGWGHSLPMLGLGLLLYSFAAAVVVPGLSTLVSSYGSPGQKGTIMGILRSLGALGRALGPMVAASVFWLAGARVCFTVCAGLFLLPFFLLRNLRHPAQTFKEE", "length": 470, "header": "tr|A0A9J7HDB4-1|A0A9J7HCE7_CRIGR Computationally mapped isoform of Major facilitator superfamily domain-containing protein 10 isoform X1 OS=Cricetulus griseus OX=10029 GN=Mfsd10 PE=4 SV=1 CANONICAL=A0A9J7HCE7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J1K4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCE7/entry#A0A9J7J1K4-1", "sequence": { "sequence": "MGWAGDTGCTPRPPIRPRPVSERRVVTVIFLGLLLDLLAFTLLLPLLPGLLENHGREQDPLYGSWQRGVDWFATVIGMPAEKRYNSVLFGGLIGSAFSLLQFFSAPLTGAASDCLGRRPVMLLCLTGMAISYAVWAASRSFKAFLASRVIGGISKGNVSLSTAIVADLGSPPTRSQGMAVIGVAFSLAFTVGPMLGAFLSVEMVPWISLLFAVSDMLFIFCFLPETLPQEKRAPSVTLGFHAAANLLSPLALLRFAAVTHHQDPPAEDRLRSLRRLGLVYFLYLFLFSGLEYTLSFLVHQRFQFSSLQQGKMFFFIGLTMATIQGTYARRISPGKEVAAVKQAMLLLVPAFLFIGWGHSLPMLGLGLLLYSFAAAVVVPGLSTLVSSYGSPGQKGTIMGILRSLGALGRALGPMVAASVFWLAGARVCFTVCAGLFLLPFFLLRNLRHPAQTFKEE", "length": 456, "header": "tr|A0A9J7J1K4-1|A0A9J7HCE7_CRIGR Computationally mapped isoform of Major facilitator superfamily domain-containing protein 10 isoform X1 OS=Cricetulus griseus OX=10029 GN=Mfsd10 PE=4 SV=1 CANONICAL=A0A9J7HCE7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KE04-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCE7/entry#A0A9J7KE04-1", "sequence": { "sequence": "MGRGYRLHTASAYTTSACVRAPRGHRDLPRPATRPPGLHAVATSAARTPGEPWARTRPPLWLLAARGRLVCHSHRDASREKVQQCPVWRISIHIAKAISEDDLCLSGLIGSAFSLLQFFSAPLTGAASDCLGRRPVMLLCLASTHWQTGMAISYAVWAASRSFKAFLASRVIGGISKGNVSLSTAIVADLGSPPTRSQGMAVIGVAFSLAFTVGPMLGAFLSVEMVPWISLLFAVSDMLFIFCFLPETLPQEKRAPSVTLGFHAAANLLSPLALLRFAAVTHHQDPPAEDRLRSLRRLGLVYFLYLFLFSGLEYTLSFLVHQRFQFSSLQQGKMFFFIGLTMATIQGTYARRISPGKEVAAVKQAMLLLVPAFLFIGWGHSLPMLGLGLLLYSFAAAVVVPGLSTLVSSYGSPGQKGTIMGILRSLGALGRALGPMVAASVFWLAGARVCFTVCAGLFLLPFFLLRNLRHPAQTFKEE", "length": 478, "header": "tr|A0A9J7KE04-1|A0A9J7HCE7_CRIGR Computationally mapped isoform of Major facilitator superfamily domain-containing protein 10 isoform X1 OS=Cricetulus griseus OX=10029 GN=Mfsd10 PE=4 SV=1 CANONICAL=A0A9J7HCE7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KF10-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCE7/entry#A0A9J7KF10-1", "sequence": { "sequence": "MGRGYRLHTASAYTTSACVRAPRGHRDLPRPATRPPGLHAVATSAARTPGEPWARTRPPLWLLAARGRLVCHSHRDASREKVQQCPVWRISIHIAKAISEDDLCLSGLIGSAFSLLQFFSAPLTGAASDCLGRRPVMLLCLTGMAISYAVWAASRSFKAFLASRVIGGISKGNVSLSTAIVADLGSPPTRSQGMAVIGVAFSLAFTVGPMLGAFLSVEMVPWISLLFAVSDMLFIFCFLPETLPQEKRAPSVTLGFHAAANLLSPLALLRFAAVTHHQDPPAEDRLRSLRRLGLVYFLYLFLFSGLEYTLSFLVHQRFQFSSWWPRGLGAHPPPPSLQQGKMFFFIGLTMATIQGTYARRISPGKEVAAVKQAMLLLVPAFLFIGWGHSLPMLGLGLLLYSFAAAVVVPGLSTLVSSYGSPGQKGTIMGILRSLGALGRALGPMVAASVFWLAGARVCFTVCAGLFLLPFFLLRNLRHPAQTFKEE", "length": 486, "header": "tr|A0A9J7KF10-1|A0A9J7HCE7_CRIGR Computationally mapped isoform of Major facilitator superfamily domain-containing protein 10 isoform X1 OS=Cricetulus griseus OX=10029 GN=Mfsd10 PE=4 SV=1 CANONICAL=A0A9J7HCE7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KE04", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KE04" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KE04", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KE04" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100767880", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767880", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "transmembrane transporter activity", "id": "GO:0022857", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022857", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCE7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCE7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "apoptotic process", "id": "GO:0006915", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006915", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCE7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCE7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "brush border membrane", "id": "GO:0031526", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031526", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCE7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCE7" } ], "pmid": "" }, { "name": "nuclear inner membrane", "id": "GO:0005637", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005637", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCE7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCE7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 179, "end_pos": 181, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7HCE7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCE7" }, { "id": "PS50850", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50850" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Major facilitator superfamily (MFS) profile", "eco_id": "ECO_0000259", "start_pos": 60, "end_pos": 487, "start_aa": "Leu", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 179, "end_pos": 181 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 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"A0A9J7H7E3-1", "uniprot_ac": "A0A9J7H7E3", "uniprot_id": "A0A9J7H7E3_CRIGR", "mass": { "chemical_mass": 110973.0, "monoisotopic_mass": 110973.0 }, "refseq": { "ac": "XP_035306332", "name": "calcium homeostasis endoplasmic reticulum protein isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306332" }, "gene_names": [ { "name": "Cherp", "type": "recommended", "evidence": [ { "id": "A0A9J7H7E3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7E3" } ] }, { "name": "Cherp", "type": "synonym", "evidence": [ { "id": "XP_035306332", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306332" } ] } ], "protein_names": [ { "name": "Calcium homeostasis endoplasmic reticulum protein isoform X3", "type": "synonym", "evidence": [ { "id": "A0A9J7H7E3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7E3/entry#names_and_taxonomy" } ] }, { "name": "calcium homeostasis endoplasmic reticulum protein isoform X3", "type": "synonym", "evidence": [ { "id": "XP_035306332", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306332" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035306332", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306332" } ] }, { "annotation": "Involved in calcium homeostasis, growth and proliferation.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HBH0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBH0#function" }, { "database": "UniProtKB", "id": "ARBA00054670", "url": "https://www.uniprot.org/uniprotkb/ARBA00054670#function" }, { "database": "UniProtKB", "id": "A0A061IPH0", "url": "https://www.uniprot.org/uniprotkb/A0A061IPH0#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H7E3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7E3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cherp", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7E3", "locus": {} } ], "crossref": [ { "id": "A0A9J7H7E3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H7E3", "database": "AlphaFoldDB", "categories": [] }, { "id": "100755648", "url": "https://www.ncbi.nlm.nih.gov/gene/100755648", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000061", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000061", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000467", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000467", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006569", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006569", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008942", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008942", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035967", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035967", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056721", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056721", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100755648", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755648", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H7E3", "url": "https://www.orthodb.org/?gene=A0A9J7H7E3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12323", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12323", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12323:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12323:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01585", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01585", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01805", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01805", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF04818", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04818", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25127", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25127", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035306332", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306332", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A061IMG4", "url": "https://www.uniprot.org/uniprotkb/A0A061IMG4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A061IMG4-1", "url": "https://www.uniprot.org/uniprotkb/A0A061IMG4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A061IPH0", "url": "https://www.uniprot.org/uniprotkb/A0A061IPH0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A061IPH0-1", "url": "https://www.uniprot.org/uniprotkb/A0A061IPH0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H7E3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7E3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H7E3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7E3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H874", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H874", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H874-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H874-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HBH0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBH0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HBH0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBH0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KAC2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAC2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KAC2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAC2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEMPLPPDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNPKFSFLFGGEFYSYYKCKLALEQQQLICKQQAPELEPTAAMPPLPQPPLAPTAPLTPAQGTPSMDELIQQSQWSLQQQEQHLLALRQEQVTAAVAHAVEQQMQKLLEETQLDMSEFDNLLQPIIDTCTKDAISAGKNWMFSNAKSPPHCELMAGHLRNRITADGAHFELRLHLIYLINDVLHHWALTRGRSLPHSQRKQARELLAALQKVVVPIYCTSFLAVEEDKQQKIARLLQLWEKNGYFDDSIIQQLQSPALGLGQYQATLINEYSSVVQPVQLAFQQQIQSLKTQHEEFVSSLAQQQQQQQQQQQPPQPQIQLPQMEAEVKATPPPAAPPPAPAPAPTIPPTTQPDDNKPPIQMPGSSEYDASGGVQDPAAAGPRGPGPHEQIPPNKPPWFDQPHPVAPWGQQQWSVAGNILNHVQLLSCLKKQEQVFQATSDNVLDERALTPPEQPPYPHHQGGPPHCPPWNNSHEGMWGEQRGDPGWNGQRDAPWNNQPDPNWNNQFEGPWNNQHEPPPWGGAQREPPFRMQRPPHFRGPFPPHQQHPQFNQPPHPHNFNRFPPRFMQDDFPPRHPFERPPYPHRFDYPQGDFPAEMGPPHHHPGHRMPHPGINEHPPWAGPQHPDFGPPPHGFNGQPPHMRRQGPPHINHDDPSLVPNVPYFDLPAGLMAPLVKLEDHEYKPLDPKDIRLPPPMPPSERLLAAVEAFYSPPSHDRPRNSEGWEQNGLYEFFRAKMRARRRKGQEKRNSGPSRSRSRSKSRGRSSSRSSSRSSKSSRSSSRSRSRSRSRSSSRSRSRSRSRSRSSRSRSRSRSRSRSKSYSPGRRRRSRSRSPTPPSAAGLGSNSAPPIPDSRLGEENKGHQMLVKMGWSGSGGLGAKEQGIQDPIKGGDVRDKWDQYKGVGVALDDPYENYRRNKSYSFIARMKARDEFSTFGARKEEKED", "length": 980, "header": "tr|A0A9J7H7E3-1|A0A9J7H7E3_CRIGR Isoform 1 of Calcium homeostasis endoplasmic reticulum protein isoform X3 OS=Cricetulus griseus OX=10029 GN=Cherp PE=4 SV=1 CANONICAL=A0A9J7H7E3-1" }, "isoforms": [ { "isoform_ac": "A0A061IMG4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7E3/entry#A0A061IMG4-1", "sequence": { "sequence": "MEMPLPPDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNPKFSFLFGGEFYSYYKCKLALEQQQLICKQQAPELEPTAAMPPLPQPPLAPTAPLTPAQGTPSMDELIQQSQWSLQQQEQHLLALRQEQVTAAVAHAVEQQMQKLLEETQLDMSEFDNLLQPIIDTCTKDAISAGKNWMFSNAKSPPHCELMAGHLRNRITADGAHFELRLHLIYLINDVLHHWALTRGRSLPHSQRKQARELLAALQKVVVPIYCTSFLAVEEDKQQKIARLLQLWEKNGYFDDSIIQQLQSPALGLGQYQATLINEYSSVVQPVQLAFQQQIQSLKTQHEEFVSSLAQQQQQQQQQQQPPQPQIQLPQMEAEVKATPPPAAPPPAPAPAPTIPPTTQPDDNKPPIQMPGSSEYDASGGVQDPAAAGPRGPGPHEQIPPNKPPWFDQPHPVAPWGQQQPPEQPPYPHHQGGPPHCPPWNNSHEGMWGEQRGDPGWNGQRDAPWNNQPDPNWNNQFEGPWNNQHEPPPWGGAQREPPFRMQRPPHFRGPFPPHQQHPQFNQPPHPHNFNRFPPRFMQDDFPPRHPFERPPYPHRFDYPQGDFPAEMGPPHHHPGHRMPHPGINEHPPWAGPQHPDFGPPPHGFNGQPPHMRRQGPPHINHDDPSLVPNVPYFDLPAGLMAPLVKLEDHEYKPLDPKDIRLPPPMPPSERLLAAVEAFYSPPSHDRPRNSEGWEQNGLYEFFRAKMRARRRKGQEKRNSGPSRSRSRSKSRGRSSSRSSSRSSKSSRSSSRSRSRSRSRSSSRSRSRSRSRSRSSRSRSRSRSRSRSKSYSPGRRRRSRSRSPTPPSAAGLGSNSAPPIPDSRLGEENKGHQMLVKMGWSGSGGLGAKEQGIQDPIKGGDVRDKWDQYKGVGVALDDPYENYRRNKSYSFIARMKARDEFSTFGARKEEKED", "length": 942, "header": "tr|A0A061IMG4-1|A0A061IMG4_CRIGR Computationally mapped isoform of Calcium homeostasis endoplasmic reticulum protein isoform X6 OS=Cricetulus griseus OX=10029 GN=Cherp PE=4 SV=1 CANONICAL=A0A9J7H7E3-1" }, "locus": {} }, { "isoform_ac": "A0A061IPH0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7E3/entry#A0A061IPH0-1", "sequence": { "sequence": "MEMPLPPDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNPKFSFLFGGEFYSYYKCKLALEQQQLICKQQAPELEPTAAMPPLPQPPLAPTAPLTPAQGTPSMDELIQQSQWSLQQQEQHLLALRQEQVTAAVAHAVEQQMQKLLEETQLDMSEFDNLLQPIIDTCTKDAISAGKNWMFSNAKSPPHCELMAGHLRNRITADGAHFELRLHLIYLINDVLHHCQRKQARELLAALQKVVVPIYCTSFLAVEEDKQQKIARLLQLWEKNGYFDDSIIQQLQSPALGLGQYQATLINEYSSVVQPVQLAFQQQIQSLKTQHEEFVSSLAQQQQQQQQQQQPPQPQIQLPQMEAEVKATPPPAAPPPAPAPAPTIPPTTQPDDNKPPIQMPGSSEYDASGGVQDPAAAGPRGPGPHEQIPPNKPPWFDQPHPVAPWGQQQPPEQPPYPHHQGGPPHCPPWNNSHEGMWGEQRGDPGWNGQRDAPWNNQPDPNWNNQFEGPWNNQHEPPPWGGAQREPPFRMQRPPHFRGPFPPHQQHPQFNQPPHPHNFNRFPPRFMQDDFPPRHPFERPPYPHRFDYPQGDFPAEMGPPHHHPGHRMPHPGINEHPPWAGPQHPDFGPPPHGFNGQPPHMRRQGPPHINHDDPSLVPNVPYFDLPAGLMAPLVKLEDHEYKPLDPKDIRLPPPMPPSERLLAAVEAFYSPPSHDRPRNSEGWEQNGLYEFFRAKMRARRRKGQEKRNSGPSRSRSRSKSRGRSSSRSSSRSSKSSRSSSRSRSRSRSRSSSRSRSRSRSRSRSSRSRSRSRSRSRSKSYSPGRRRRSRSRSPTPPSAAGLGSNSAPPIPDSRLGEENKGHQMLVKMGWSGSGGLGAKEQGIQDPIKGGDVRDKWDQYKGVGVALDDPYENYRRNKSYSFIARMKARDEFSTFGARKEEKED", "length": 931, "header": "tr|A0A061IPH0-1|A0A061IPH0_CRIGR Computationally mapped isoform of Calcium homeostasis endoplasmic reticulum protein OS=Cricetulus griseus OX=10029 GN=Cherp PE=4 SV=1 CANONICAL=A0A9J7H7E3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H7E3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7E3/entry#A0A9J7H7E3-1", "sequence": { "sequence": "MEMPLPPDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNPKFSFLFGGEFYSYYKCKLALEQQQLICKQQAPELEPTAAMPPLPQPPLAPTAPLTPAQGTPSMDELIQQSQWSLQQQEQHLLALRQEQVTAAVAHAVEQQMQKLLEETQLDMSEFDNLLQPIIDTCTKDAISAGKNWMFSNAKSPPHCELMAGHLRNRITADGAHFELRLHLIYLINDVLHHWALTRGRSLPHSQRKQARELLAALQKVVVPIYCTSFLAVEEDKQQKIARLLQLWEKNGYFDDSIIQQLQSPALGLGQYQATLINEYSSVVQPVQLAFQQQIQSLKTQHEEFVSSLAQQQQQQQQQQQPPQPQIQLPQMEAEVKATPPPAAPPPAPAPAPTIPPTTQPDDNKPPIQMPGSSEYDASGGVQDPAAAGPRGPGPHEQIPPNKPPWFDQPHPVAPWGQQQWSVAGNILNHVQLLSCLKKQEQVFQATSDNVLDERALTPPEQPPYPHHQGGPPHCPPWNNSHEGMWGEQRGDPGWNGQRDAPWNNQPDPNWNNQFEGPWNNQHEPPPWGGAQREPPFRMQRPPHFRGPFPPHQQHPQFNQPPHPHNFNRFPPRFMQDDFPPRHPFERPPYPHRFDYPQGDFPAEMGPPHHHPGHRMPHPGINEHPPWAGPQHPDFGPPPHGFNGQPPHMRRQGPPHINHDDPSLVPNVPYFDLPAGLMAPLVKLEDHEYKPLDPKDIRLPPPMPPSERLLAAVEAFYSPPSHDRPRNSEGWEQNGLYEFFRAKMRARRRKGQEKRNSGPSRSRSRSKSRGRSSSRSSSRSSKSSRSSSRSRSRSRSRSSSRSRSRSRSRSRSSRSRSRSRSRSRSKSYSPGRRRRSRSRSPTPPSAAGLGSNSAPPIPDSRLGEENKGHQMLVKMGWSGSGGLGAKEQGIQDPIKGGDVRDKWDQYKGVGVALDDPYENYRRNKSYSFIARMKARDEFSTFGARKEEKED", "length": 980, "header": "tr|A0A9J7H7E3-1|A0A9J7H7E3_CRIGR Isoform 1 of Calcium homeostasis endoplasmic reticulum protein isoform X3 OS=Cricetulus griseus OX=10029 GN=Cherp PE=4 SV=1 CANONICAL=A0A9J7H7E3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H874-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7E3/entry#A0A9J7H874-1", "sequence": { "sequence": "MTMEKQKDNPKFSFLFGGEFYSYYKCKLALEQQQLICKQQAPELEPTAAMPPLPQPPLAPTAPLTPAQGTPSMDELIQQSQWSLQQQEQHLLALRQEQVTAAVAHAVEQQMQKLLEETQLDMSEFDNLLQPIIDTCTKDAISAGKNWMFSNAKSPPHCELMAGHLRNRITADGAHFELRLHLIYLINDVLHHWALTRGRSLPHSQRKQARELLAALQKVVVPIYCTSFLAVEEDKQQKIARLLQLWEKNGYFDDSIIQQLQSPALGLGQYQATLINEYSSVVQPVQLAFQQQIQSLKTQHEEFVSSLAQQQQQQQQQQQPPQPQIQLPQMEAEVKATPPPAAPPPAPAPAPTIPPTTQPDDNKPPIQMPGSSEYDASGGVQDPAAAGPRGPGPHEQIPPNKPPWFDQPHPVAPWGQQQWSVAGNILNHVQLLSCLKKQEQVFQATSDNVLDERALTPPEQPPYPHHQGGPPHCPPWNNSHEGMWGEQRGDPGWNGQRDAPWNNQPDPNWNNQFEGPWNNQHEPPPWGGAQREPPFRMQRPPHFRGPFPPHQQHPQFNQPPHPHNFNRFPPRFMQDDFPPRHPFERPPYPHRFDYPQGDFPAEMGPPHHHPGHRMPHPGINEHPPWAGPQHPDFGPPPHGFNGQPPHMRRQGPPHINHDDPSLVPNVPYFDLPAGLMAPLVKLEDHEYKPLDPKDIRLPPPMPPSERLLAAVEAFYSPPSHDRPRNSEGWEQNGLYEFFRAKMRARRRKGQEKRNSGPSRSRSRSKSRGRSSSRSSSRSSKSSRSSSRSRSRSRSRSSSRSRSRSRSRSRSSRSRSRSRSRSRSKSYSPGRRRRSRSRSPTPPSAAGLGSNSAPPIPDSRLGEENKGHQMLVKMGWSGSGGLGAKEQGIQDPIKGGDVRDKWDQYKGVGVALDDPYENYRRNKSYSFIARMKARDEFSTFGARKEEKED", "length": 948, "header": "tr|A0A9J7H874-1|A0A9J7H874_CRIGR Computationally mapped isoform of Calcium homeostasis endoplasmic reticulum protein isoform X5 OS=Cricetulus griseus OX=10029 GN=Cherp PE=4 SV=1 CANONICAL=A0A9J7H7E3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HBH0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7E3/entry#A0A9J7HBH0-1", "sequence": { "sequence": "MEMPLPPDDQELRNVIDKLAQFVARNGPEFEKMTMEKQKDNPKFSFLFGGEFYSYYKCKLALEQQQLICKQQAPELEPTAAMPPLPQPPLAPTAPLTPAQGTPSMDELIQQSQWSLQQQEQHLLALRQEQVTAAVAHAVEQQMQKLLEETQLDMSEFDNLLQPIIDTCTKDAISAGKNWMFSNAKSPPHCELMAGHLRNRITADGAHFELRLHLIYLINDVLHHCQRKQARELLAALQKVVVPIYCTSFLAVEEDKQQKIARLLQLWEKNGYFDDSIIQQLQSPALGLGQYQATLINEYSSVVQPVQLAFQQQIQSLKTQHEEFVSSLAQQQQQQQQQQQPPQPQIQLPQMEAEVKATPPPAAPPPAPAPAPTIPPTTQPDDNKPPIQMPGSSEYDASGGVQDPAAAGPRGPGPHEQIPPNKPPWFDQPHPVAPWGQQQWSVAGNILNHVQLLSCLKKQEQVFQATSDNVLDERALTPPEQPPYPHHQGGPPHCPPWNNSHEGMWGEQRGDPGWNGQRDAPWNNQPDPNWNNQFEGPWNNQHEPPPWGGAQREPPFRMQRPPHFRGPFPPHQQHPQFNQPPHPHNFNRFPPRFMQDDFPPRHPFERPPYPHRFDYPQGDFPAEMGPPHHHPGHRMPHPGINEHPPWAGPQHPDFGPPPHGFNGQPPHMRRQGPPHINHDDPSLVPNVPYFDLPAGLMAPLVKLEDHEYKPLDPKDIRLPPPMPPSERLLAAVEAFYSPPSHDRPRNSEGWEQNGLYEFFRAKMRARRRKGQEKRNSGPSRSRSRSKSRGRSSSRSSSRSSKSSRSSSRSRSRSRSRSSSRSRSRSRSRSRSSRSRSRSRSRSRSKSYSPGRRRRSRSRSPTPPSAAGLGSNSAPPIPDSRLGEENKGHQMLVKMGWSGSGGLGAKEQGIQDPIKGGDVRDKWDQYKGVGVALDDPYENYRRNKSYSFIARMKARDEFSTFGARKEEKED", "length": 969, "header": "tr|A0A9J7HBH0-1|A0A9J7H7E3_CRIGR Computationally mapped isoform of Calcium homeostasis endoplasmic reticulum protein isoform X3 OS=Cricetulus griseus OX=10029 GN=Cherp PE=4 SV=1 CANONICAL=A0A9J7H7E3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KAC2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7E3/entry#A0A9J7KAC2-1", "sequence": { "sequence": "MQKLLEETQLDMSEFDNLLQPIIDTCTKDAISAGKNWMFSNAKSPPHCELMAGHLRNRITADGAHFELRLHLIYLINDVLHHWALTRGRSLPHSQRKQARELLAALQKVVVPIYCTSFLAVEEDKQQKIARLLQLWEKNGYFDDSIIQQLQSPALGLGQYQATLINEYSSVVQPVQLAFQQQIQSLKTQHEEFVSSLAQQQQQQQQQQQPPQPQIQLPQMEAEVKATPPPAAPPPAPAPAPTIPPTTQPDDNKPPIQMPGSSEYDASGGVQDPAAAGPRGPGPHEQIPPNKPPWFDQPHPVAPWGQQQWSVAGNILNHVQLLSCLKKQEQVFQATSDNVLDERALTPPEQPPYPHHQGGPPHCPPWNNSHEGMWGEQRGDPGWNGQRDAPWNNQPDPNWNNQFEGPWNNQHEPPPWGGAQREPPFRMQRPPHFRGPFPPHQQHPQFNQPPHPHNFNRFPPRFMQDDFPPRHPFERPPYPHRFDYPQGDFPAEMGPPHHHPGHRMPHPGINEHPPWAGPQHPDFGPPPHGFNGQPPHMRRQGPPHINHDDPSLVPNVPYFDLPAGLMAPLVKLEDHEYKPLDPKDIRLPPPMPPSERLLAAVEAFYSPPSHDRPRNSEGWEQNGLYEFFRAKMRARRRKGQEKRNSGPSRSRSRSKSRGRSSSRSSSRSSKSSRSSSRSRSRSRSRSSSRSRSRSRSRSRSSRSRSRSRSRSRSKSYSPGRRRRSRSRSPTPPSAAGLGSNSAPPIPDSRLGEENKGHQMLVKMGWSGSGGLGAKEQGIQDPIKGGDVRDKWDQYKGVGVALDDPYENYRRNKSYSFIARMKARDEFSTFGARKEEKED", "length": 838, "header": "tr|A0A9J7KAC2-1|A0A9J7H7E3_CRIGR Computationally mapped isoform of Calcium homeostasis endoplasmic reticulum protein isoform X3 OS=Cricetulus griseus OX=10029 GN=Cherp PE=4 SV=1 CANONICAL=A0A9J7H7E3-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 102, "start_aa": "Thr", "end_pos": 102, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr102", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 872, "start_aa": "Thr", "end_pos": 872, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr872", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KAC2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAC2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KAC2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAC2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100755648", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755648", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H7E3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7E3" } ], "pmid": "" }, { "name": "nucleic acid binding", "id": "GO:0003676", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003676", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H7E3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7E3" } ], "pmid": "" }, { "name": "transmembrane transporter binding", "id": "GO:0044325", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044325", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H7E3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7E3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H7E3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7E3" } ], "pmid": "" }, { "name": "perinuclear region of cytoplasm", "id": "GO:0048471", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048471", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H7E3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7E3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "RNA processing", "id": "GO:0006396", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006396", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H7E3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7E3" } ], "pmid": "" }, { "name": "intracellular calcium ion homeostasis", "id": "GO:0006874", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006874", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H7E3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7E3" } ], "pmid": "" }, { "name": "release of sequestered calcium ion into cytosol", "id": "GO:0051209", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051209", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H7E3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7E3" } ], "pmid": "" }, { "name": "positive regulation of calcineurin-NFAT signaling cascade", "id": "GO:0070886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H7E3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7E3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 509, "end_pos": 511, "annotation": "n_glycosylation_sequon" }, { "start_pos": 953, "end_pos": 955, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7H7E3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7E3" }, { "id": "PS51391", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51391" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CID", "eco_id": "ECO_0000259", "start_pos": 149, "end_pos": 300, "start_aa": "Glu", "end_aa": "Gly", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7H7E3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7E3" }, { "id": "PS50174", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50174" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-patch", "eco_id": "ECO_0000259", "start_pos": 894, "end_pos": 944, "start_aa": "Glu", "end_aa": "Asp", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7H7E3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7E3" }, { "id": "PS50128", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50128" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SURP motif", "eco_id": "ECO_0000259", "start_pos": 15, "end_pos": 57, "start_aa": "Val", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 102, 872 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 509, "end_pos": 511 }, { "start_pos": 953, "end_pos": 955 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7HCD5-1", "uniprot_ac": "A0A9J7HCD5", "uniprot_id": "A0A9J7HCD5_CRIGR", "mass": { "chemical_mass": 81559.0, "monoisotopic_mass": 81559.0 }, "refseq": { "ac": "XP_035309591", "name": "zinc finger protein 14 isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309591" }, "gene_names": [ { "name": "LOC100765088", "type": "recommended", "evidence": [ { "id": "A0A9J7HCD5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCD5" } ] }, { "name": "LOC100765088", "type": "synonym", "evidence": [ { "id": "XP_035309591", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309591" } ] } ], "protein_names": [ { "name": "Zinc finger protein 14 isoform X3", "type": "synonym", "evidence": [ { "id": "A0A9J7HCD5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCD5/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 14 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_035309591", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309591" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276835.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035309591", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309591" } ] }, { "annotation": "May be involved in transcriptional regulation.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCM0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCM0#function" }, { "database": "UniProtKB", "id": "ARBA00003767", "url": "https://www.uniprot.org/uniprotkb/ARBA00003767#function" }, { "database": "UniProtKB", "id": "A0A9J7HCD5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCD5#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCD5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCD5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100765088", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCD5", "locus": {} } ], "crossref": [ { "id": "A0A9J7HCD5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HCD5", "database": "AlphaFoldDB", "categories": [] }, { "id": "100765088", "url": "https://www.ncbi.nlm.nih.gov/gene/100765088", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100765088", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765088", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HCD5", "url": "https://www.orthodb.org/?gene=A0A9J7HCD5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23226", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23226", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23226:SF430", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23226:SF430", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24399", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24399", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24399:SF67", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24399:SF67", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12874", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12874", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13912", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13912", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035309591", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309591", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HCD5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCD5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HCD5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCD5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HCM0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCM0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HCM0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCM0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEETFRNLAAIGRTQDDQHIDNDHRYSRRNQRNEVVERLLERNKSSECKEIFRQIPNTIVNRKVSHRTMICESHVYEDNMFIGHSSINVSVPLQTIQKPHQYELCGASLCKVGECEKAFIYPECFLKREDTDTEQKFSEFNQCDKIFKSNDYIQIRVNKETREEICMDKQHYDAFTYTDFLQYVEKIHTGKKPYVCKQCGKTFSFLSNIRRHERTHTGEKPYKCNICDKTFTCLTNFQEHERTHTGEKPYLCTQCGKSFSFLSNIRRHERTHTGEKPYRCNICGKAFSYLTNFQDHERTHTGEKPYVCTQCGKAFTYYYSFQTHKRCHTGEKPYVCKQCGKAFSYYNSIQTHKRCHTGEKPYVCKLCDKAFTTLSSLRYHERIHSGEKPHVCLQCGKGFNSSSTLRIHERTHTGEKPYKCRQCGKVFSVDSSLRYHERIHSGEKPYVCQQCGKAFTRHTSLRCHERIHCGEKPYVCKQCGKGFISCSNFRKHESTHSGEKLCVCKLCGKAFTDQSSLRRHERIHSGEKPYVCKHCGKGFSSLSGCQRHEQIHTGEKPYVCKNCGKAFTNPGALRNHERIHSGEKPYVCEQCGKGFISFSKFRIHERIHTGEKPYKCKQCMKAFTGHSSLRRHERIHSGEKPFVCKQCGKSFYTLSDCQRHEQIHTGEKPYICKQCGKAFTRSSSLKIHEKTHTRRNSSV", "length": 699, "header": "tr|A0A9J7HCD5-1|A0A9J7HCD5_CRIGR Isoform 1 of Zinc finger protein 14 isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100765088 PE=3 SV=1 CANONICAL=A0A9J7HCD5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HCD5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCD5/entry#A0A9J7HCD5-1", "sequence": { "sequence": "MEETFRNLAAIGRTQDDQHIDNDHRYSRRNQRNEVVERLLERNKSSECKEIFRQIPNTIVNRKVSHRTMICESHVYEDNMFIGHSSINVSVPLQTIQKPHQYELCGASLCKVGECEKAFIYPECFLKREDTDTEQKFSEFNQCDKIFKSNDYIQIRVNKETREEICMDKQHYDAFTYTDFLQYVEKIHTGKKPYVCKQCGKTFSFLSNIRRHERTHTGEKPYKCNICDKTFTCLTNFQEHERTHTGEKPYLCTQCGKSFSFLSNIRRHERTHTGEKPYRCNICGKAFSYLTNFQDHERTHTGEKPYVCTQCGKAFTYYYSFQTHKRCHTGEKPYVCKQCGKAFSYYNSIQTHKRCHTGEKPYVCKLCDKAFTTLSSLRYHERIHSGEKPHVCLQCGKGFNSSSTLRIHERTHTGEKPYKCRQCGKVFSVDSSLRYHERIHSGEKPYVCQQCGKAFTRHTSLRCHERIHCGEKPYVCKQCGKGFISCSNFRKHESTHSGEKLCVCKLCGKAFTDQSSLRRHERIHSGEKPYVCKHCGKGFSSLSGCQRHEQIHTGEKPYVCKNCGKAFTNPGALRNHERIHSGEKPYVCEQCGKGFISFSKFRIHERIHTGEKPYKCKQCMKAFTGHSSLRRHERIHSGEKPFVCKQCGKSFYTLSDCQRHEQIHTGEKPYICKQCGKAFTRSSSLKIHEKTHTRRNSSV", "length": 699, "header": "tr|A0A9J7HCD5-1|A0A9J7HCD5_CRIGR Isoform 1 of Zinc finger protein 14 isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100765088 PE=3 SV=1 CANONICAL=A0A9J7HCD5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HCM0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCD5/entry#A0A9J7HCM0-1", "sequence": { "sequence": "MGFTRSFPKEAAQRCDGGNLQEPGCHRNEVVERLLERNKSSECKEIFRQIPNTIVNRKVSHRTMICESHVYEDNMFIGHSSINVSVPLQTIQKPHQYELCGASLCKVGECEKAFIYPECFLKREDTDTEQKFSEFNQCDKIFKSNDYIQIRVNKETREEICMDKQHYDAFTYTDFLQYVEKIHTGKKPYVCKQCGKTFSFLSNIRRHERTHTGEKPYKCNICDKTFTCLTNFQEHERTHTGEKPYLCTQCGKSFSFLSNIRRHERTHTGEKPYRCNICGKAFSYLTNFQDHERTHTGEKPYVCTQCGKAFTYYYSFQTHKRCHTGEKPYVCKQCGKAFSYYNSIQTHKRCHTGEKPYVCKLCDKAFTTLSSLRYHERIHSGEKPHVCLQCGKGFNSSSTLRIHERTHTGEKPYKCRQCGKVFSVDSSLRYHERIHSGEKPYVCQQCGKAFTRHTSLRCHERIHCGEKPYVCKQCGKGFISCSNFRKHESTHSGEKLCVCKLCGKAFTDQSSLRRHERIHSGEKPYVCKHCGKGFSSLSGCQRHEQIHTGEKPYVCKNCGKAFTNPGALRNHERIHSGEKPYVCEQCGKGFISFSKFRIHERIHTGEKPYKCKQCMKAFTGHSSLRRHERIHSGEKPFVCKQCGKSFYTLSDCQRHEQIHTGEKPYICKQCGKAFTRSSSLKIHEKTHTRRNSSV", "length": 694, "header": "tr|A0A9J7HCM0-1|A0A9J7HCD5_CRIGR Computationally mapped isoform of Zinc finger protein 14 isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100765088 PE=3 SV=1 CANONICAL=A0A9J7HCD5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [], "pathway": [ { "id": "cge:100765088", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765088", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCD5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCD5" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCD5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCD5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCD5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCD5" } ], "pmid": "" }, { "name": "regulation of immune system process", "id": "GO:0002682", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002682", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCD5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCD5" } ], "pmid": "" }, { "name": "regulation of cytokine production", "id": "GO:0001817", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001817", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCD5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCD5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCD5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCD5" } ], "pmid": "" }, { "name": "DNA-binding transcription repressor activity, RNA polymerase II-specific", "id": "GO:0001227", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001227", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCD5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCD5" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCD5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCD5" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCD5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCD5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 400, "end_pos": 402, "annotation": "n_glycosylation_sequon" }, { "start_pos": 43, "end_pos": 45, "annotation": "n_glycosylation_sequon" }, { "start_pos": 696, "end_pos": 698, "annotation": "n_glycosylation_sequon" }, { "start_pos": 88, "end_pos": 90, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7HCD5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCD5" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 194, "end_pos": 221, "start_aa": "Tyr", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 400, "end_pos": 402 }, { "start_pos": 43, "end_pos": 45 }, { "start_pos": 696, "end_pos": 698 }, { "start_pos": 88, "end_pos": 90 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "uniprot_canonical_ac": "A0A9J7H8T4-1", "uniprot_ac": "A0A9J7H8T4", "uniprot_id": "A0A9J7H8T4_CRIGR", "mass": { "chemical_mass": 17357.0, "monoisotopic_mass": 17357.0 }, "refseq": { "ac": "XP_035305911", "name": "protein SSXA1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305911" }, "gene_names": [ { "name": "LOC100767016", "type": "recommended", "evidence": [ { "id": "A0A9J7H8T4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8T4" } ] }, { "name": "LOC100767016", "type": "synonym", "evidence": [ { "id": "XP_035305911", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305911" } ] } ], "protein_names": [ { "name": "Protein SSXA1 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7H8T4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8T4/entry#names_and_taxonomy" } ] }, { "name": "protein SSXA1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_035305911", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305911" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048604.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035305911", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305911" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H8T4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8T4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100767016", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8T4", "locus": {} } ], "crossref": [ { "id": "A0A9J7H8T4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H8T4", "database": "AlphaFoldDB", "categories": [] }, { "id": "100767016", "url": "https://www.ncbi.nlm.nih.gov/gene/100767016", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003655", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003655", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019041", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019041", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100767016", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767016", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GPC9", "url": "https://www.orthodb.org/?gene=A0A9J7GPC9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7H8T4", "url": "https://www.orthodb.org/?gene=A0A9J7H8T4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14112", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14112", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14112:SF29", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14112:SF29", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF09514", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09514", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035305911", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305911", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GPC9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GPC9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GPC9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GPC9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H8T4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8T4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H8T4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8T4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNRRRSCSVNVKKTEHNPEKTCKAFEDISKYFSKEEWAKMSYSEKITYVYMKRNYTTMTRLGLRTHLPDFMQSKEKATKSVLSDSDEGCGHESQERNESKLSVWSHRLRERKKPVIYEEISDPEEEDEDEEEKGWTYESWGPRQI", "length": 145, "header": "tr|A0A9J7H8T4-1|A0A9J7H8T4_CRIGR Isoform 1 of Protein SSXA1 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100767016 PE=4 SV=1 CANONICAL=A0A9J7H8T4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GPC9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8T4/entry#A0A9J7GPC9-1", "sequence": { "sequence": "MNRRRSCSVNVKKTEHNPEKTCKAFEDISKYFSKEEWAKMSYSEKITYVYMKRNYTTMTRLGLRTHLPDFMQSKEKATKSVLSDSDEGCGHESQVQNRKYTIKKCPHRPVTLQLSMLHGLPP", "length": 122, "header": "tr|A0A9J7GPC9-1|A0A9J7H8T4_CRIGR Computationally mapped isoform of Protein SSXA1 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100767016 PE=4 SV=1 CANONICAL=A0A9J7H8T4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H8T4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8T4/entry#A0A9J7H8T4-1", "sequence": { "sequence": "MNRRRSCSVNVKKTEHNPEKTCKAFEDISKYFSKEEWAKMSYSEKITYVYMKRNYTTMTRLGLRTHLPDFMQSKEKATKSVLSDSDEGCGHESQERNESKLSVWSHRLRERKKPVIYEEISDPEEEDEDEEEKGWTYESWGPRQI", "length": 145, "header": "tr|A0A9J7H8T4-1|A0A9J7H8T4_CRIGR Isoform 1 of Protein SSXA1 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100767016 PE=4 SV=1 CANONICAL=A0A9J7H8T4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GPC9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GPC9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GPC9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GPC9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100767016", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767016", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H8T4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8T4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H8T4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8T4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 54, "end_pos": 56, "annotation": "n_glycosylation_sequon" }, { "start_pos": 97, "end_pos": 99, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7H8T4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8T4" }, { "id": "PS50805", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50805" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KRAB", "eco_id": "ECO_0000259", "start_pos": 23, "end_pos": 93, "start_aa": "Lys", "end_aa": "Ser", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7H8T4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8T4" }, { "id": "PS50806", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50806" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KRAB-related", "eco_id": "ECO_0000259", "start_pos": 20, "end_pos": 83, "start_aa": "Lys", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 54, "end_pos": 56 }, { "start_pos": 97, "end_pos": 99 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"A0A9J7HCE9_CRIGR", "mass": { "chemical_mass": 58713.0, "monoisotopic_mass": 58713.0 }, "refseq": { "ac": "XP_035309462", "name": "zinc finger protein 431-like isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309462" }, "gene_names": [ { "name": "LOC113838864", "type": "recommended", "evidence": [ { "id": "A0A9J7HCE9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCE9" } ] }, { "name": "LOC113838864", "type": "synonym", "evidence": [ { "id": "XP_035309462", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309462" } ] } ], "protein_names": [ { "name": "Zinc finger protein 431-like isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7HCE9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCE9/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 431-like isoform X1", "type": "synonym", "evidence": [ { "id": "XP_035309462", "database": "RefSeq", "url": 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This record is derived from a genomic sequence (NW_023276808.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035309462", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309462" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCE9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCE9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113838864", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCE9", "locus": {} } ], "crossref": [ { "id": "A0A9J7HCE9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HCE9", "database": "AlphaFoldDB", "categories": [] }, { "id": "113838864", "url": "https://www.ncbi.nlm.nih.gov/gene/113838864", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050589", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050589", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113838864", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113838864", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HCE9", "url": "https://www.orthodb.org/?gene=A0A9J7HCE9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24394", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24394", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24394:SF48", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24394:SF48", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24404", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24404", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24404:SF111", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24404:SF111", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13465", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13465", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035309462", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309462", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GPP6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GPP6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GPP6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GPP6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HCE9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCE9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HCE9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCE9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLETYKNLNDIGYIWEDHTIEEHGASSKRHERHETNQIGEKSSVYTEYVKSFAYNSNLQRHKQICTGEKPYECIHCCKVLATHSNFQKHKRTHTGEKNYESIQCGKVFTKHIQIEGRKRTHTGEKPHECMQCDKGFADPSSLHVHKGTHTGEKPYECNQCGKAFTYHSCLLRHKITHTGEKPYECNHCGKGFADPSTLRVHKRTHTGEKPYECNQCGKAFAQHIHLQRHKITHTGEKPYECSQCGKTFTQHSHLQRHKITHTGEKPYGCNQCDKAFMFHNHLQRHKRTHTGEKPYECNQCGKAFAQHSHLQRHKRIHTGEKPYECTQCGKAFMSHSHLQSHKRTHTGEKPYECNQCGKGFADLSSLRVHKRTHSGEKPYECNQCGKAFVQHSHLQRHKRRHTGEKPYECNYCGKGFADSGALHVHKRTHTGEKPYECTQCGKAFMCHSHLKCHKRTHSGEKPYECNWCGKAFAQPSHLQRHKIIHTGEKPYEYNQCGKAFAQQSSSNA", "length": 508, "header": "tr|A0A9J7HCE9-1|A0A9J7HCE9_CRIGR Isoform 1 of Zinc finger protein 431-like isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC113838864 PE=3 SV=1 CANONICAL=A0A9J7HCE9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GPP6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCE9/entry#A0A9J7GPP6-1", "sequence": { "sequence": "MLETYKNLNDIGYIWEDHTIEEHGASSKRHERHETNQIGEKSSVYTEYVKSFAYNSNLQRHKQIHTGEKPYECNQCGKAFTYHSCLLRHKITHTGEKPYECNHCGKGFADPSTLRVHKRTHTGEKPYECNQCGKAFAQHIHLQRHKITHTGEKPYECSQCGKTFTQHSHLQRHKITHTGEKPYGCNQCDKAFMFHNHLQRHKRTHTGEKPYECNQCGKAFAQHSHLQRHKRIHTGEKPYECTQCGKAFMSHSHLQSHKRTHTGEKPYECNQCGKGFADLSSLRVHKRTHSGEKPYECNQCGKAFVQHSHLQRHKRRHTGEKPYECNYCGKGFADSGALHVHKRTHTGEKPYECTQCGKAFMCHSHLKCHKRTHSGEKPYECNWCGKAFAQPSHLQRHKIIHTGEKPYEYNQCGKAFAQQSSSNA", "length": 424, "header": "tr|A0A9J7GPP6-1|A0A9J7HCE9_CRIGR Computationally mapped isoform of Zinc finger protein 431-like isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC113838864 PE=3 SV=1 CANONICAL=A0A9J7HCE9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HCE9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCE9/entry#A0A9J7HCE9-1", "sequence": { "sequence": "MLETYKNLNDIGYIWEDHTIEEHGASSKRHERHETNQIGEKSSVYTEYVKSFAYNSNLQRHKQICTGEKPYECIHCCKVLATHSNFQKHKRTHTGEKNYESIQCGKVFTKHIQIEGRKRTHTGEKPHECMQCDKGFADPSSLHVHKGTHTGEKPYECNQCGKAFTYHSCLLRHKITHTGEKPYECNHCGKGFADPSTLRVHKRTHTGEKPYECNQCGKAFAQHIHLQRHKITHTGEKPYECSQCGKTFTQHSHLQRHKITHTGEKPYGCNQCDKAFMFHNHLQRHKRTHTGEKPYECNQCGKAFAQHSHLQRHKRIHTGEKPYECTQCGKAFMSHSHLQSHKRTHTGEKPYECNQCGKGFADLSSLRVHKRTHSGEKPYECNQCGKAFVQHSHLQRHKRRHTGEKPYECNYCGKGFADSGALHVHKRTHTGEKPYECTQCGKAFMCHSHLKCHKRTHSGEKPYECNWCGKAFAQPSHLQRHKIIHTGEKPYEYNQCGKAFAQQSSSNA", "length": 508, "header": "tr|A0A9J7HCE9-1|A0A9J7HCE9_CRIGR Isoform 1 of Zinc finger protein 431-like isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC113838864 PE=3 SV=1 CANONICAL=A0A9J7HCE9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [], "pathway": [ { "id": "cge:113838864", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113838864", "resource": "KEGG Pathway" } ], "orthologs": [], 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"evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCE9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCE9" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCE9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCE9" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCE9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCE9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCE9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCE9" } ], "pmid": "" }, { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCE9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCE9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7HCE9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCE9" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 71, "end_pos": 98, "start_aa": "Tyr", "end_aa": "Asn", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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{ "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "uniprot_canonical_ac": "A0A9J7H6T0-1", "uniprot_ac": "A0A9J7H6T0", "uniprot_id": "A0A9J7H6T0_CRIGR", "mass": { "chemical_mass": 94806.0, "monoisotopic_mass": 94806.0 }, "refseq": { "ac": "XP_035295399", "name": "rho guanine nucleotide exchange factor 15 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035295399" }, "gene_names": [ { "name": "Arhgef15", "type": "recommended", "evidence": [ { "id": "A0A9J7H6T0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6T0" } ] }, { "name": "Arhgef15", "type": "synonym", "evidence": [ { "id": "XP_035295399", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035295399" } ] } ], "protein_names": [ { "name": "Rho guanine nucleotide exchange factor 15 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7H6T0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6T0/entry#names_and_taxonomy" } ] }, { "name": "rho guanine nucleotide exchange factor 15 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035295399", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035295399" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613643.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035295399", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035295399" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H6T0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6T0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Arhgef15", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6T0", "locus": {} } ], "crossref": [ { "id": "A0A9J7H6T0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H6T0", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00160", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00160", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd01221", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01221", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100752685", "url": "https://www.ncbi.nlm.nih.gov/gene/100752685", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000219", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000219", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035899", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035899", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047270", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047270", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047271", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047271", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100752685", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752685", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H6T0", "url": "https://www.orthodb.org/?gene=A0A9J7H6T0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12845", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12845", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12845:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12845:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00621", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00621", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035295399", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035295399", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H216", 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"MSAQSLPAATPPTLKPPRIIRPRPPSRHRAPHSPGPPHNGSSSKALPQIPNDASASMCTSIFWEPPTSSLKPPALLPPSVSRTSLDSQTSPDSPSSTPSPSPVSRRSVSPEPAPCSPVPPPKPSGSPRTRTRVPSLPMPLQDGSASAPGTLPMPLQDGSASAPGTVRRLAGKFEWGAEGKAQSSDSLERCSQGGTDVNGERETLQAVLSGNGSQENGPPDAVLACPPCCPCVCHVAKPGLELRWVPVGSSDDILRAPCRASPLRASRSRINPPIISHPPVVLTSYRSTAERKLLPPLKPPKPTRVRQETSTSGELPQPDPELPSEDGIQTGTRAWSRDRPEEAPQNVPPAALEGRDEEGLEVLKEQWELPLQDEPLYQTYRAAVLSEELWGVGEDGGPSPANPGEAPTFSRLPGPRNTLWQELPAVRASGLLESLSPQERRMQESLFEVVTSEASYLRSLRLLTDTFVLSRALRDTLTPRDHHTLFSNVQRVQGVSERFLGTLLSRVRSSPHISDLCDVVHAHAVGPFSVYVDYVRNQQYQEETYSRLMDTNVRFSAELRRLQSLPKCERLPLPSFLLLPFQRITRLRMLLQNILGQTEEGSSRQENAQKALGAVSKIIERCSAEVGRMKQTEELIRLTQRLRFHKVKALPLVSWSRRLELQGELTELGCRRGGVLFNSRPRFTPLCLLLFSDLLLITQPKSGQRLQVLDYAHRSLVQAQQVPDPSGPPTFRLSLLSNHQGRPTHRLLQAASLSDMQRWLGAFPTPGPLPCSPDTIYEDCECSQELCSEPSTPSKTEGQSLDSKVPRKHPHKNPEGWLKGLPGAFPAQLVCEVTGEHERRKHLRQHQKLLEAVGPSSGTSDTPQP", "length": 865, "header": "tr|A0A9J7H6T0-1|A0A9J7H6T0_CRIGR Isoform 1 of Rho guanine nucleotide exchange factor 15 isoform X2 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"MSAQSLPAATPPTLKPPRIIRPRPPSRHRAPHSPGPPHNGSSSKALPQIPNDASASMCTSIFWEPPTSSLKPPALLPPSVSRTSLDSQTSPDSPSSTPSPSPVSRRSVSPEPAPCSPVPPPKPSGSPRTRTRVPSLPMPLQDGSASAPGTLPMPLQDGSASAPGTVRRLAGKFEWGAEGKAQSSDSLERCSQGGTDVNGERETLQAVLSGNGSQENGPPDAVLACPPCCPCVCHVAKPGLELRWVPVGSSDDILRAPCRASPLRASRSRINPPIISHPPVVLTSYRSTAERKLLPPLKPPKPTRVRQETSTSGELPQPDPELPSEDGIQTGTRAWSRDRPEEAPQNVPPAALEGRDEEGLEVLKEQWELPLQDEPLYQTYRAAVLSEELWGVGEDGGPSPANPGEAPTFSRLPGPRNTLWQELPAVRASGLLESLSPQERRMQESLFEVVTSEASYLRSLRLLTDTFVLSRALRDTLTPRDHHTLFSNVQRVQGVSERFLGTLLSRVRSSPHISDLCDVVHAHAVGPFSVYVDYVRNQQYQEETYSRLMDTNVRFSAELRRLQSLPKCERLPLPSFLLLPFQRITRLRMLLQNILGQTEEGSSRQENAQKALGAVSKIIERCSAEVGRMKQTEELIRLTQRLRFHKVKALPLVSWSRRLELQGELTELGCRRGGVLFNSRPRFTPLCLLLFSDLLLITQPKSGQRLQVLDYAHRSLVQAQQVPDPSGPPTFRLSLLSNHQGRPTHRLLQAASLSDMQRWLGAFPTPGPLPCSPDTIYEDCECSQELCSEPSTPSKTEGQSLDSKVPRKHPHKNPEGWLKGLPGAFPAQLVCEVTGEHERRKHLRQHQKLLEAVGPSSGTSDTPQP", "length": 865, "header": "tr|A0A9J7H6T0-1|A0A9J7H6T0_CRIGR Isoform 1 of Rho guanine nucleotide exchange factor 15 isoform X2 OS=Cricetulus griseus OX=10029 GN=Arhgef15 PE=4 SV=1 CANONICAL=A0A9J7H6T0-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 765, "start_aa": "Thr", "end_pos": 765, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr765", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 792, "start_aa": "Thr", "end_pos": 792, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr792", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 97, "start_aa": "Thr", "end_pos": 97, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr97", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. 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"MKRPLSPSPSSEKEPPTTAASECPPHSPESSKPKRERKQPSYTLCDVCNIQLNSAAQAQVHCGGRAHQRRLRQLSLGKTSTGPAGPASSAPSPLLASLTLPTRPLQTPLDFKHLLAFHLNGTTPLSLFPNFSTMDPVQKAVISHTFGVPSPLKKKLFISCNICHLRFNSANQAEAHYKGHRHARKLKAVEAAKSKQKPRNLTPNGTVASSASPPANGGPRSPQSKDPASPPLGPSLQLSPTPDASARELAHSDHLDAAASSSSSSSSCPPCSLDLGTEAQGPEPGEVAVGSGVNGEGRSEKGCLYCPTCKVTVNSASQLQAHNTGAKHRWMVEGQQGAPRRGRGRPVSRVGAGHKTKRVTGNRGGRQGPSPPFHCALCQLQVNSETQLKQHMSSRRHKDRLAGKPPKPSSQHSKLQKQAALAVSVLKSKLALQKQLTKTLAARFLPSPLPTTAAAICALPGPLALRPAATAAATLFPAPVLGPALFRTPAGAVRPTAGPILFAPY", "length": 505, "header": "tr|A0A9J7H618-1|A0A9J7H618_CRIGR Isoform 1 of Zinc finger protein 385C isoform X1 OS=Cricetulus griseus OX=10029 GN=Znf385c PE=4 SV=1 CANONICAL=A0A9J7H618-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K7P3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H618/entry#A0A9J7K7P3-1", "sequence": { "sequence": "MKRPLSPSPSSEKEPPTTAASECPPHSPESSKPKRERKQPSYTLCDVCNIQLNSAAQAQVHCGGRAHQRRLRQLSLGKTSTGPAGPASSAPSPLLASLTLPTRPLQTPLDFKHLLAFHLNGTTPLSLFPNFSTMDPVQKAVISHTFGVPSPLKKKLFISCNICHLRFNSANQAEAHYKGHRHARKLKAVEAAKSKQKPRNLTPNGTVASSASPPANGGPRSPQSKDPASPPLGPSLQLSPTPDASARELAHSDHLDAAASSSSSSSSCPPCSLDLGTEAQGPEPGEVAVGSGVNGEGRSEKGCLYCPTCKVTVNSASQLQAHNTGAKHRWMVEGQQGAPRRGRGRPVSRVGAGHKTKRVTGNRGGRQGPSPPFHCALCQLQVNSETQLKQHMSSRRHKDRLAGKPPKPSSQHSKLQKQAALASKLALQKQLTKTLAARFLPSPLPTTAAAICALPGPLALRPAATAAATLFPAPVLGPALFRTPAGAVRPTAGPILFAPY", "length": 500, "header": "tr|A0A9J7K7P3-1|A0A9J7H618_CRIGR Computationally mapped isoform of Zinc finger protein 385C isoform X1 OS=Cricetulus griseus OX=10029 GN=Znf385c PE=4 SV=1 CANONICAL=A0A9J7H618-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", 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"database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H7R9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7R9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H8Q2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8Q2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H8Q2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8Q2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K1A0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K1A0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K1A0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K1A0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K8Z8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8Z8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K8Z8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8Z8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KAY5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAY5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KAY5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAY5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KCF5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCF5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KCF5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCF5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KCJ5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCJ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KCJ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KCJ5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MELEDLPWPGELEEEEEEEVENASAAATEEEVKAGTSQEILGAEEEEVEEEGPEVGLDLDLNCEFQPQESTDEEEDEMAKAWLQAHPAHTVGACPPLPPPRHVYAPVEHLSETERAESWNHLPQERDPSQTLETSQTETDVRIEGTKVTDFPSQEGGELAQAERPVTEPKLNFLCSPLIVIQNNFATPDLPLLTCLIQHQEFESDSLFQQSELEFAPLRGIPDKSEDTEWLARPSEVSEALFQATSETSSDLVNSCLSISQHPLTGSTFGSQRSFPSEQENNGENATPNAPDELKSLNDSDNYDNALLSFMSWQMEKDSQQPEGNLADKDQVSASAISDVSDESIDAGRNNSFGSACSQDQYWEQEALQQTEACLASKDQTSFPCENTPPPSEMPYSFLRCMLERGKGAPFTSVNHLKDVCLGAPAAVELRPKMDSFESFEGNEHLQKEFSYFFKQKERRDFLVSSQVHAKAPEIKYIGKVAVPNSHEQVSEAYILSRGLEFSKLEASGGPFSTVKSNLDETSEQLYFQEERTQKAASTFGEKNVDATENVAFEAVIASIESSKQESPIRGIQTDINKPLADDSQEREPPKSDLSPLNYNDENSFMDKLKHPKYQSTPGVFEPAASKPLLHKEDDGGSSLSRDPDLKSPPNAPQNILKGLQGKAESGIVTSYGDAEYSSLYKTADVHSERLAELQREVDHSNLGISQTFPTPLPSFVPQEPTSESNYPFPRLRMLRISPDTLPTALTAGDTSKGGKVAISQSKLKPDITNTLEDSDIAAHSSLSFEGLSHFAVTPEGHLSEEAPKASAHLGLANQNTGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVSAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLSTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVSPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVSPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQDGYRTDQEPAVLAFPGQADQKNGLSTMTPTSYSRREKPGIFYQQVPTGGYLPEEIPKAPAAPTLSNQQKLPTGVSTSYSQSDKPGVFYQHALTGGRLPENIMKTSAAPGTTDQKFDVPVSPPTSYTGPTVFYQQELPKSHLSEETVRGSALPGPAAQNIGITALPSASYSHGEKPHTFYHQAFPESYLNHPAWKVSVAPGSVDQKIGAAVVPSTYSHDVKPGSFPQEELPDRHFTGETQKVSPVLRPAGQKPEVSTVHSSSYSKGMKPGIFYQHPLSDSRPGKEPLDVLAVSGSAEKTHSPTVTFASQPHKETANAFYQQTLSDSHLTEEALPVYVIPGLRDQKTPLPSELPVSYSHRAKNLPEDVIVSTDSGPADKTADIPTVSSSSYQHKKKPTVPYHQELPDRPVPAGTQKASLVSRSVDQKSGTSHPYGEMPSVFYQQELPDSHSTEKSTKTLIPGPADQKTDLPTVPPTSPSHAEKPIFPYQLTLPGSHLPEDAFKASPVSKSSDELSGISTKTSASYSNKERPSISHQQKFPDSRLTEDAQVSGTTRSEDQKTGTTVSVSPTSYSQKVRPGISYQQVLPSHLSEEALQTSATTRPADQSIAMPIVTSTSSSQREKPQIFYQQALPGSHLPGEPLKVSAAPRPPDQNTGAPAVSSSSYLPGEESIIFYQPGLSGNSLSAETFKSPGISGLTDQKTSIPAGPSASGSHPVREKSIIFYQNDLPTSPLTAETLRVAAVPVPTEQKTGTPAGPSGSHPVDGKFIIFLPDGHLPKEASDVLTSPGAVDLKTGEPPVYSNSYFGEKPIVFHHQALSDSQRTEKGHKVSVVSGPADQKTGLPFITSSYSSLELPDRPLTENTGQVSVVPGPTDQKTAIPTVPSASHSYIERPTVSYQLEFPDRSEKALEVLGGAGPTEQKTEIPVVPSIPYYGERPSGSYQQELPDFPEEALQVLGVAGVVSSSPYSKDEMPLIASQQELPDLTKISLKAVGPGSTDQKTEAQIVSSSSREKPSGFYQQELPNTGEDALGGFVHPGPFVQKVEKATVPLTYHPSQELPASHLPEESLKVSTGSALAAQTPGTPTGLSSSYFHREKFSDVYPKASPDHVLTENSLKASTVPGVSDQNRRPAVSSGSHSHKEKHKISAADLLDDEKSELPTVTHRSYLHRKKPAVSSGIGPDDQKTPLPTAFHGSYLQKVKPLVFIQKQLPDRDHYEDIPKISTVYESTAVNTGVPVPLPVSYAHREKLDTSRGFPQELPDRYLTEDALKVSSYLGQAEQISGLPIVSPGTYSHSEKHQLVSEHVQDNLNSPESYSLIANSIPLNSQIDDGVICKPESSGFGDVGYEETQHIDHGSKTLKEIRTLLMEAENIALKRYNFPAPLVPFRDVNDVSFIKSKKVVCFKDPSVTDICTQREAFTEEVPHVECIQKDIGTQTNLNCRSGVENWEFISSTTIRSPLQEAYSTRVAFDETFRQYEASRSVMRSEPEGCSAGFGNKIFIPMMTFIKSDSSSDVSDGCCSWNSNLPESLESVSDVFLNFFPYASSKTSITDSREEDGFSESDDGCGSVDSLAAHVRYLLQCESSLNQAKQILKNAEEEECRVRAHAWNLKFNLGHDCGYSISELNEDDRRKVEEIKAKLFGHGRATHVSEGLCSPQGIGCVPEAVCGHIVIESHEKGCFRTLTAEQPRPDSRHCVFQSVEPSDSIRGRRSPSSWRGRHINLSRSIDQSNTHLKVWNSFQLHSHPPFEKLAPDDIKISKGVGMPFHTNMDSHPLGLVEPTFVPAKEMDFPSPESMKQFTTSITFSSHGHSKYISDTSVFKIGVTTESSQDTGPSLGVFKSRIPEEQISPRDLKQKIFSPSSLKRQSHSPVTILAEDSRQRHKLPADCEHSHQKQKPLERSGFKASHSVPSVTSNCSNFKGVHFSGKDTIISPDKLSSTLEVKEKNVTVTPDLPSCIFIEGRELFEQSHSPHTDHQMRKYSSPSCPDIASCIFLEQRELFEQCKAPQVDHDNREDHSFFPKCQDYVVADLPSDFLDQQQCRSPDVDDDMRKEQFPLSQGQGWVVEKIQHMPQSHFSNMINVDAKVSNLISQSAPDHCTADSPPPSNRKALSCVRITLCPKTSSKLDSGTLDERFHSLDTASKTKINSKCNFDLRTIPSRSLEPTSKLLTCKPIAKDQESLGFLGPESPLDLEVTQSSLPDSKTISQDLKTKLPQNSQIVTSRQTQVNKSDLEGYSKPEGTPVSADGSPKQSKALFPSSSTKLSSDAITQITTESPEKTTFSSEIFINVEDHGQEVLGPMAQKPPELASVCSVQQITSSHGKDGQPVLLPYKPSGSSKMYYVPQLKTLPSCLDSRSDTTIESSHSGSNDAIAPDFPAEMLGTRDDDLSTTVNIKHTEGIYSKRAVTKVKKPPQKDNAGSGDTTVQDKETENLPDTESIKQKEEIHVKRTIPQEFCPEKEGSLEIDISESECHSAFENTTHSVFRSAKFYFHHPVHLPHEQDFCHESLGRSVFMKHSWKDFFHHHSEHSCLPPPGPIADKTKMDYTRIKSLSINLNLGENEKMHTLKNQAKDPKGKRQTNDQKKDQKVTPELTTQCTMSLNELWNKFQERQKQQKSPGNCDKKELSLVERLDRLAKLLQNPITHSLQASESTQDDSRGGRGVRGWRTGKRQHQQRGKLQRKQCKSLERGHNTGDFRKSRVLSHCGGKSNKIKIEQVKLDKYILRKQPDFDYASNTSSDSRLSEESELLTDSPNIFSSTNSLMDSDVLTQTDRDVTLNERSSSISTIDTARLIQAFGQERLYVSPRRIKLYSSVANQQRRYLEKRCKYSKSALGTGYPQMTSEHTRRRHIQEANHISSDSISSAGSFLTLDSTLYNGETVHMLNKGVQAGNLEIVTGTKKYTRDVGVTFPTPSSSEARLEEDSDVTSWSEEKNKEKRFFSNYLQNKNLRKIKPNSCEGVSWFVPVESRKSGSKKENLPKIYSPGIAWFEPVTKNKPWREPLREQNWQKQCMSRGRLGGPGGDGGRVPLRPFVRATLQEALQLHRPDFISRSGERVKRLKLLVQERKLQSIFQSEREALFNTVRPLPRRVVLTVQSNTPIGKKEMIQRTKRIYEQLPEVKKKREEEKRKSDYKSYRLRAQHYKSKVTNRLLGRKVPWD", "length": 4561, "header": "tr|A0A9J7H8Q2-1|A0A9J7H8Q2_CRIGR Isoform 1 of Alstrom syndrome protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Alms1 PE=4 SV=1 CANONICAL=A0A9J7H8Q2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H387-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8Q2/entry#A0A9J7H387-1", "sequence": { "sequence": "MELEDLPWPGELEEEEEEEVENASAAATEEEVKAGTSQEILGAEEEEVEEEGPEVGLDLDLNCEFQPQESTDEEEDEMAKAWLQAHPAHTVGACPPLPPPRHVYAPVEHLSETEVDHSNLGISQTFPTPLPSFVPQEPTSESNYPFPRLRMLRISPDTLPTALTAGDTSKGGKVAISQSKLKPDITNTLEDSDIAAHSSLSFEGLSHFAVTPEGHLSEEAPKASAHLGLANQNTGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVSAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLSTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVSPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVSPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQDGYRTDQEPAVLAFPGQADQKNGLSTMTPTSYSRREKPGIFYQQVPTGGYLPEEIPKAPAAPTLSNQQKLPTGVSTSYSQSDKPGVFYQHALTGGRLPENIMKTSAAPGTTDQKFDVPVSPPTSYTGPTVFYQQELPKSHLSEETVRGSALPGPAAQNIGITALPSASYSHGEKPHTFYHQAFPESYLNHPAWKVSVAPGSVDQKIGAAVVPSTYSHDVKPGSFPQEELPDRHFTGETQKVSPVLRPAGQKPEVSTVHSSSYSKGMKPGIFYQHPLSDSRPGKEPLDVLAVSGSAEKTHSPTVTFASQPHKETANAFYQQTLSDSHLTEEALPVYVIPGLRDQKTPLPSELPVSYSHRAKNLPEDVIVSTDSGPADKTADIPTVSSSSYQHKKKPTVPYHQELPDRPVPAGTQKASLVSRSVDQKSGTSHPYGEMPSVFYQQELPDSHSTEKSTKTLIPGPADQKTDLPTVPPTSPSHAEKPIFPYQLTLPGSHLPEDAFKASPVSKSSDELSGISTKTSASYSNKERPSISHQQKFPDSRLTEDAQVSGTTRSEDQKTGTTVSVSPTSYSQKVRPGISYQQVLPSHLSEEALQTSATTRPADQSIAMPIVTSTSSSQREKPQIFYQQALPGSHLPGEPLKVSAAPRPPDQNTGAPAVSSSSYLPGEESIIFYQPGLSGNSLSAETFKSPGISGLTDQKTSIPAGPSASGSHPVREKSIIFYQNDLPTSPLTAETLRVAAVPVPTEQKTGTPAGPSGSHPVDGKFIIFLPDGHLPKEASDVLTSPGAVDLKTGEPPVYSNSYFGEKPIVFHHQALSDSQRTEKGHKVSVVSGPADQKTGLPFITSSYSSLELPDRPLTENTGQVSVVPGPTDQKTAIPTVPSASHSYIERPTVSYQLEFPDRSEKALEVLGGAGPTEQKTEIPVVPSIPYYGERPSGSYQQELPDFPEEALQVLGVAGVVSSSPYSKDEMPLIASQQELPDLTKISLKAVGPGSTDQKTEAQIVSSSSREKPSGFYQQELPNTGEDALGGFVHPGPFVQKVEKATVPLTYHPSQELPASHLPEESLKVSTGSALAAQTPGTPTGLSSSYFHREKFSDVYPKASPDHVLTENSLKASTVPGVSDQNRRPAVSSGSHSHKEKHKISAADLLDDEKSELPTVTHRSYLHRKKPAVSSGIGPDDQKTPLPTAFHGSYLQKVKPLVFIQKQLPDRDHYEDIPKISTVYESTAVNTGVPVPLPVSYAHREKLDTSRGFPQELPDRYLTEDALKVSSYLGQAEQISGLPIVSPGTYSHSEKHQLVSEHVQDNLNSPESYSLIANSIPLNSQIDDGVICKPESSGFGDVGYEETQHIDHGSKTLKEIRTLLMEAENIALKRYNFPAPLVPFRDVNDVSFIKSKKVVCFKDPSVTDICTQREAFTEEVPHVECIQKDIGTQTNLNCRSGVENWEFISSTTIRSPLQEAYSTRVAFDETFRQYEASRSVMRSEPEGCSAGFGNKIFIPMMTFIKSDSSSDVSDGCCSWNSNLPESLESVSDVFLNFFPYASSKTSITDSREEDGFSESDDGCGSVDSLAAHVRYLLQCESSLNQAKQILKNAEEEECRVRAHAWNLKFNLGHDCGYSISELNEDDRRKVEEIKAKLFGHGRATHVSEGLCSPQGIGCVPEAVCGHIVIESHEKGCFRTLTAEQPRPDSRHCVFQSVEPSDSIRGRRSPSSWRGRHINLSRSIDQSNTHLKVWNSFQLHSHPPFEKLAPDDIKISKGVGMPFHTNMDSHPLGLVEPTFVPAKEMDFPSPESMKQFTTSITFSSHGHSKYISDTSVFKIGVTTESSQDTGPSLGVFKSRIPEEQISPRDLKQKIFSPSSLKRQSHSPVTILAEDSRQRHKLPADCEHSHQKQKPLERSGFKASHSVPSVTSNCSNFKGVHFSGKDTIISPDKLSSTLEVKEKNVTVTPDLPSCIFIEGRELFEQSHSPHTDHQMRKYSSPSCPDIASCIFLEQRELFEQCKAPQVDHDNREDHSFFPKCQDYVVADLPSDFLDQQQCRSPDVDDDMRKEQFPLSQGQGWVVEKIQHMPQSHFSNMINVDAKVSNLISQSAPDHCTADSPPPSNRKALSCVRITLCPKTSSKLDSGTLDERFHSLDTASKTKINSKCNFDLRTIPSRSLEPTSKLLTCKPIAKDQESLGFLGPESPLDLEVTQSSLPDSKTISQDLKTKLPQNSQIVTSRQTQVNKSDLEGYSKPEGTPVSADGSPKQSKALFPSSSTKLSSDAITQITTESPEKTTFSSEIFINVEDHGQEVLGPMAQKPPELASVCSVQQITSSHGKDGQPVLLPYKPSGSSKMYYVPQLKTLPSCLDSRSDTTIESSHSGSNDAIAPDFPAEMLGTRDDDLSTTVNIKHTEGIYSKRAVTKVKKPPQKDNAGSGDTTVQDKETENLPDTESIKQKEEIHVKRTIPQEFCPEKEGSLEIDISESECHSAFENTTHSVFRSAKFYFHHPVHLPHEQDFCHESLGRSVFMKHSWKDFFHHHSEHSCLPPPGPIADKTKMDYTRIKSLSINLNLGENEKMHTLKNQAKDPKGKRQTNDQKKDQKVTPELTTQCTMSLNELWNKFQERQKQQKSPGNCDKKELSLVERLDRLAKLLQNPITHSLQASESTQDDSRGGRGVRGWRTGKRQHQQRGKLQRKQCKSLERGHNTGDFRKSRVLSHCGGKSNKIKIEQVKLDKYILRKQPDFDYASNTSSDSRLSEESELLTDSPNIFSSTNSLMDSDVLTQTDRDVTLNERSSSISTIDTARLIQAFGQERLYVSPRRIKLYSSVANQQRRYLEKRCKYSKSALGTGYPQMTSEHTRRRHIQEANHISSDSISSAGSFLTLDSTLYNGETVHMLNKGVQAGNLEIVTGTKKYTRDVGVTFPTPSSSEARLEEDSDVTSWSEEKNKEKRFFSNYLQNKNLRKIKPNSCEGVSWFVPVESRKSGSKKENLPKIYSPGIAWFEPVTKNKPWREPLREQNWQKQCMSRGRLGGPGGDGGRVPLRPFVRATLQEALQLHRPDFISRSGERVKRLKLLVQERKLQSIFQSEREALFNTVRPLPRRVVLTVQSNTPIGKKEMIQRTKRIYEQLPEVKKKREEEKRKSDYKSYRLRAQHYKSKVTNRLLGRKVPWD", "length": 3978, "header": "tr|A0A9J7H387-1|A0A9J7H8Q2_CRIGR Computationally mapped isoform of Alstrom syndrome protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Alms1 PE=4 SV=1 CANONICAL=A0A9J7H8Q2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H490-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8Q2/entry#A0A9J7H490-1", "sequence": { "sequence": "MELEDLPWPGELEEEEEEEVENASAAATEEEVKAGTSQEILGAEEEEVEEEGPEVGLDLDLNCEFQPQESTDEEEDEMAKAWLQAHPAHTVGACPPLPPPRHVYAPVEHLSETERAESWNHLPQERDPSQTLETSQTETDVRIEGTKVTDFPSQEGGELAQAERPVTEPKLNFLCSPLIGDTSKGGKVAISQSKLKPDITNTLEDSDIAAHSSLSFEGLSHFAVTPEGHLSEEAPKASAHLGLANQNTGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVSAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLSTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVSPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVSPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQDGYRTDQEPAVLAFPGQADQKNGLSTMTPTSYSRREKPGIFYQQVPTGGYLPEEIPKAPAAPTLSNQQKLPTGVSTSYSQSDKPGVFYQHALTGGRLPENIMKTSAAPGTTDQKFDVPVSPPTSYTGPTVFYQQELPKSHLSEETVRGSALPGPAAQNIGITALPSASYSHGEKPHTFYHQAFPESYLNHPAWKVSVAPGSVDQKIGAAVVPSTYSHDVKPGSFPQEELPDRHFTGETQKVSPVLRPAGQKPEVSTVHSSSYSKGMKPGIFYQHPLSDSRPGKEPLDVLAVSGSAEKTHSPTVTFASQPHKETANAFYQQTLSDSHLTEEALPVYVIPGLRDQKTPLPSELPVSYSHRAKNLPEDVIVSTDSGPADKTADIPTVSSSSYQHKKKPTVPYHQELPDRPVPAGTQKASLVSRSVDQKSGTSHPYGEMPSVFYQQELPDSHSTEKSTKTLIPGPADQKTDLPTVPPTSPSHAEKPIFPYQLTLPGSHLPEDAFKASPVSKSSDELSGISTKTSASYSNKERPSISHQQKFPDSRLTEDAQVSGTTRSEDQKTGTTVSVSPTSYSQKVRPGISYQQVLPSHLSEEALQTSATTRPADQSIAMPIVTSTSSSQREKPQIFYQQALPGSHLPGEPLKVSAAPRPPDQNTGAPAVSSSSYLPGEESIIFYQPGLSGNSLSAETFKSPGISGLTDQKTSIPAGPSASGSHPVREKSIIFYQNDLPTSPLTAETLRVAAVPVPTEQKTGTPAGPSGSHPVDGKFIIFLPDGHLPKEASDVLTSPGAVDLKTGEPPVYSNSYFGEKPIVFHHQALSDSQRTEKGHKVSVVSGPADQKTGLPFITSSYSSLELPDRPLTENTGQVSVVPGPTDQKTAIPTVPSASHSYIERPTVSYQLEFPDRSEKALEVLGGAGPTEQKTEIPVVPSIPYYGERPSGSYQQELPDFPEEALQVLGVAGVVSSSPYSKDEMPLIASQQELPDLTKISLKAVGPGSTDQKTEAQIVSSSSREKPSGFYQQELPNTGEDALGGFVHPGPFVQKVEKATVPLTYHPSQELPASHLPEESLKVSTGSALAAQTPGTPTGLSSSYFHREKFSDVYPKASPDHVLTENSLKASTVPGVSDQNRRPAVSSGSHSHKEKHKISAADLLDDEKSELPTVTHRSYLHRKKPAVSSGIGPDDQKTPLPTAFHGSYLQKVKPLVFIQKQLPDRDHYEDIPKISTVYESTAVNTGVPVPLPVSYAHREKLDTSRGFPQELPDRYLTEDALKVSSYLGQAEQISGLPIVSPGTYSHSEKHQLVSEHVQDNLNSPESYSLIANSIPLNSQIDDGVICKPESSGFGDVGYEETQHIDHGSKTLKEIRTLLMEAENIALKRYNFPAPLVPFRDVNDVSFIKSKKVVCFKDPSVTDICTQREAFTEEVPHVECIQKDIGTQTNLNCRSGVENWEFISSTTIRSPLQEAYSTRVAFDETFRQYEASRSVMRSEPEGCSAGFGNKIFIPMMTFIKSDSSSDVSDGCCSWNSNLPESLESVSDVFLNFFPYASSKTSITDSREEDGFSESDDGCGSVDSLAAHVRYLLQCESSLNQAKQILKNAEEEECRVRAHAWNLKFNLGHDCGYSISELNEDDRRKVEEIKAKLFGHGRATHVSEGLCSPQGIGCVPEAVCGHIVIESHEKGCFRTLTAEQPRPDSRHCVFQSVEPSDSIRGRRSPSSWRGRHINLSRSIDQSNTHLKVWNSFQLHSHPPFEKLAPDDIKISKGVGMPFHTNMDSHPLGLVEPTFVPAKEMDFPSPESMKQFTTSITFSSHGHSKYISDTSVFKIGVTTESSQDTGPSLGVFKSRIPEEQISPRDLKQKIFSPSSLKRQSHSPVTILAEDSRQRHKLPADCEHSHQKQKPLERSGFKASHSVPSVTSNCSNFKGVHFSGKDTIISPDKLSSTLEVKEKNVTVTPDLPSCIFIEGRELFEQSHSPHTDHQMRKYSSPSCPDIASCIFLEQRELFEQCKAPQVDHDNREDHSFFPKCQDYVVADLPSDFLDQQQCRSPDVDDDMRKEQFPLSQGQGWVVEKIQHMPQSHFSNMINVDAKVSNLISQSAPDHCTADSPPPSNRKALSCVRITLCPKTSSKLDSGTLDERFHSLDTASKTKINSKCNFDLRTIPSRSLEPTSKLLTCKPIAKDQESLGFLGPESPLDLEVTQSSLPDSKTISQDLKTKLPQNSQIVTSRQTQVNKSDLEGYSKPEGTPVSADGSPKQSKALFPSSSTKLSSDAITQITTESPEKTTFSSEIFINVEDHGQEVLGPMAQKPPELASVCSVQQITSSHGKDGQPVLLPYKPSGSSKMYYVPQLKTLPSCLDSRSDTTIESSHSGSNDAIAPDFPAEMLGTRDDDLSTTVNIKHTEGIYSKRAVTKVKKPPQKDNAGSGDTTVQDKETENLPDTESIKQKEEIHVKRTIPQEFCPEKEGSLEIDISESECHSAFENTTHSVFRSAKFYFHHPVHLPHEQDFCHESLGRSVFMKHSWKDFFHHHSEHSCLPPPGPIADKTKMDYTRIKSLSINLNLGENEKMHTLKNQAKDPKGKRQTNDQKKDQKVTPELTTQCTMSLNELWNKFQERQKQQKSPGNCDKKELSLVERLDRLAKLLQNPITHSLQASESTQDDSRGGRGVRGWRTGKRQHQQRGKLQRKQCKSLERGHNTGDFRKSRVLSHCGGKSNKIKIEQVKLDKYILRKQPDFDYASNTSSDSRLSEESELLTDSPNIFSSTNSLMDSDVLTQTDRDVTLNERSSSISTIDTARLIQAFGQERLYVSPRRIKLYSSVANQQRRYLEKRCKYSKSALGTGYPQMTSEHTRRRHIQEANHISSDSISSAGSFLTLDSTLYNGETVHMLNKGVQAGNLEIVTGTKKYTRDVGVTFPTPSSSEARLEEDSDVTSWSEEKNKEKRFFSNYLQNKNLRKIKPNSCEGVSWFVPVESRKSGSKKENLPKIYSPGIAWFEPVTKNKPWREPLREQNWQKQCMSRGRLGGPGGDGGRVPLRPFVRATLQEALQLHRPDFISRSGERVKRLKLLVQERKLQSIFQSEREALFNTVRPLPRRVVLTVQSNTPIGKKEMIQRTKRIYEQLPEVKKKREEEKRKSDYKSYRLRAQHYKSKVTNRLLGRKVPWD", "length": 3992, "header": "tr|A0A9J7H490-1|A0A9J7H8Q2_CRIGR Computationally mapped isoform of Alstrom syndrome protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Alms1 PE=4 SV=1 CANONICAL=A0A9J7H8Q2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H4R7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8Q2/entry#A0A9J7H4R7-1", "sequence": { "sequence": "MELEDLPWPGELEEEEEEEVENASAAATEEEVKAGTSQEILGAEEEEVEEEGPEVGLDLDLNCEFQPQESTDEEEDEMAKAWLQAHPAHTVGACPPLPPPRHVYAPVEHLSETERAESWNHLPQERDPSQTLETSQTETDVRIEGTKVTDFPSQEGGELAQAERPVTEPKLNFLCSPLIVIQNNFATPDLPLLTCLIQHQEFESDSLFQQSELEFAPLRGIPDKSEDTEWLARPSEVSEALFQATSETSSDLVNSCLSISQHPLTGSTFGSQRSFPSEQENNGENATPNAPDELKSLNDSDNYDNALLSFMSWQMEKDSQQPEGNLADKDQVSASAISDVSDESIDAGRNNSFGSACSQDQYWEQEALQQTEACLASKDQTSFPCENTPPPSEMPYSFLRCMLERGKGAPFTSVNHLKDVCLGAPAAVELRPKMDSFESFEGNEHLQKEFSYFFKQKERRDFLVSSQVHAKAPEIKYIGKVAVPNSHEQVSEAYILSRGLEFSKLEASGGPFSTVKSNLDETSEQLYFQEERTQKAASTFGEKNVDATENVAFEAVIASIESSKQESPIRGIQTDINKPLADDSQEREPPKSDLSPLNYNDENSFMDKLKHPKYQSTPGVFEPAASKPLLHKEDDGGSSLSRDPDLKSPPNAPQNILKGLQGKAESGIVTSYGDAEYSSLYKTADVHSERLAELQREVDHSNLGISQTFPTPLPSFVPQEPTSESNYPFPRLRMLRISPDTLPTALTAGDTSKGGKVAISQSKLKPDITNTLEDSDIAAHSSLSFEGLSHFAVTPEGHLSEEAPKASAHLGLANQNTGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVSAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLSTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVSPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVSPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQDGYRTDQEPAVLAFPGQADQKNGLSTMTPTSYSRREKPGIFYQQVPTGGYLPEEIPKAPAAPTLSNQQKLPTGVSTSYSQSDKPGVFYQHALTGGRLPENIMKTSAAPGTTDQKFDVPVSPPTSYTGPTVFYQQELPKSHLSEETVRGSALPGPAAQNIGITALPSASYSHGEKPHTFYHQAFPESYLNHPAWKVSVAPGSVDQKIGAAVVPSTYSHDVKPGSFPQEELPDRHFTGETQKVSPVLRPAGQKPEVSTVHSSSYSKGMKPGIFYQHPLSDSRPGKEPLDVLAVSGSAEKTHSPTVTFASQPHKETANAFYQQTLSDSHLTEEALPVYVIPGLRDQKTPLPSELPVSYSHRAKNLPEDVIVSTDSGPADKTADIPTVSSSSYQHKKKPTVPYHQELPDRPVPAGTQKASLVSRSVDQKSGTSHPYGEMPSVFYQQELPDSHSTEKSTKTLIPGPADQKTDLPTVPPTSPSHAEKPIFPYQLTLPGSHLPEDAFKASPVSKSSDELSGISTKTSASYSNKERPSISHQQKFPDSRLTEDAQVSGTTRSEDQKTGTTVSVSPTSYSQKVRPGISYQQVLPSHLSEEALQTSATTRPADQSIAMPIVTSTSSSQREKPQIFYQQALPGSHLPGEPLKVSAAPRPPDQNTGAPAVSSSSYLPGEESIIFYQPGLSGNSLSAETFKSPGISGLTDQKTSIPAGPSASGSHPVREKSIIFYQNDLPTSPLTAETLRVAAVPVPTEQKTGTPAGPSGSHPVDGKFIIFLPDGHLPKEASDVLTSPGAVDLKTGEPPVYSNSYFGEKPIVFHHQALSDSQRTEKGHKVSVVSGPADQKTGLPFITSSYSSLELPDRPLTENTGQVSVVPGPTDQKTAIPTVPSASHSYIERPTVSYQLEFPDRSEKALEVLGGAGPTEQKTEIPVVPSIPYYGERPSGSYQQELPDFPEEALQVLGVAGVVSSSPYSKDEMPLIASQQELPDLTKISLKAVGPGSTDQKTEAQIVSSSSREKPSGFYQQELPNTGEDALGGFVHPGPFVQKVEKATVPLTYHPSQELPASHLPEESLKVSTGSALAAQTPGTPTGLSSSYFHREKFSDVYPKASPDHVLTENSLKASTVPGVSDQNRRPAVSSGSHSHKEKHKISAADLLDDEKSELPTVTHRSYLHRKKPAVSSGIGPDDQKTPLPTAFHGSYLQKVKPLVFIQKQLPDRDHYEDIPKISTVYESTAVNTGVPVPLPVSYAHREKLDTSRGFPQELPDRYLTEDALKVSSYLGQAEQISGLPIVSPGTYSHSEKHQLVSEHVQDNLNSPESYSLIANSIPLNSQIDDGVICKPESSGFGDVGYEETQHIDHGSKTLKEIRTLLMEAENIALKRYNFPAPLVPFRDVNDVSFIKSKKVVCFKDPSVTDICTQREAFTEEVPHVECIQKDIGTQTNLNCRSGVENWEFISSTTIRSPLQEAYSTRVAFDETFRQYEASRSVMRSEPEGCSAGFGNKIFIPMMTFIKSDSSSDVSDGCCSWNSNLPESLESVSDVFLNFFPYASSKTSITDSREEDGFSESDDGCGSVDSLAAHVRYLLQCESSLNQAKQILKNAEEEECRVRAHAWNLKFNLGHDCGYSISELNEDDRRKVEEIKAKLFGHGRATHVSEGLCSPQGIGCVPEAVCGHIVIESHEKGCFRTLTAEQPRPDSRHCVFQSVEPSDSIRGRRSPSSWRGRHINLSRSIDQSNTHLKVWNSFQLHSHPPFEKLAPDDIKISKGVGMPFHTNMDSHPLGLVEPTFVPAKEMDFPSPESMKQFTTSITFSSHGHSKYISDTSVFKIGVTTESSQDTGPSLGVFKSRIPEEQISPRDLKQKIFSPSSLKRQSHSPVTILAEDSRQRHKLPADCEHSHQKQKPLERSGFKASHSVPSVTSNCSNFKGVHFSGKDTIISPDKLSSTLEVKEKNVTVTPDLPSCIFIEGRELFEQSHSPHTDHQMRKYSSPSCPDIASCIFLEQRELFEQCKAPQVDHDNREDHSFFPKCQDYVVADLPSDFLDQQQCRSPDVDDDMRKEQFPLSQGQGWVVEKIQHMPQSHFSNMINVDAKVSNLISQSAPDHCTADSPPPSNRKALSCVRITLCPKTSSKLDSGTLDERFHSLDTASKTKINSKCNFDLRTIPSRSLEPTSKLLTCKPIAKDQESLGFLGPESPLDLEVTQSSLPDSKTISQDLKTKLPQNSQIVTSRQTQVNKSDLEGYSKPEGTPVSADGSPKQSKALFPSSSTKLSSDAITQITTESPEKTTFSSEIFINVEDHGQEVLGPMAQKPPELASVCSVQQITSSHGKDGQPVLLPYKPSGSSKMYYVPQLKTLPSCLDSRSDTTIESSHSGSNDAIAPDFPAEMLGTRDDDLSTTVNIKHTEGIYSKRAVTKVKKPPQKDNAGSGDTTVQDKETENLPDTESIKQKEEIHVKRTIPQEFCPEKEGSLEIDISESECHSAFENTTHSVFRSAKFYFHHPVHLPHEQDFCHESLGRSVFMKHSWKDFFHHHSEHSCLPPPGPIADKTKMDYTRIKSLSINLNLGENEKMHTLKNQAKDPKGKRQTNDQKKDQKVTPELTTQCTMSLNELWNKFQERQKQQKSPGNCDKKELSLVERLDRLAKLLQNPITHSLQASESTQDDSRGGRGVRGWRTGKRQHQQRGKLQRKQCKSLERGHNTGDFRKSRVLSHCGGKSNKIKIEQVKLDKYILRKQPDFDYASNTSSDSRLSEESELLTDSPNIFSSTNSLMDSDVLTQTDRDVTLNERSSSISTIDTARLIQAFGQERLYVSPRRIKLYSSVANQQRRYLEKRCKYSKSALGTGYPQMTSEHTRRRHIQVTWRL", "length": 4260, "header": "tr|A0A9J7H4R7-1|A0A9J7H8Q2_CRIGR Computationally mapped isoform of Alstrom syndrome protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Alms1 PE=4 SV=1 CANONICAL=A0A9J7H8Q2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H5L2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8Q2/entry#A0A9J7H5L2-1", "sequence": { "sequence": "MELEDLPWPGELEEEEEEEVENASAAATEEEVKAGTSQEILGAEEEEVEEEGPEVGLDLDLNCEFQPQESTDEEEDEMAKAWLQAHPAHTVGACPPLPPPRHVYAPVEHLSETERAESWNHLPQERDPSQTLETSQTETDVRIEGTKVTDFPSQEGGELAQAERPVTEPKLNFLCSPLIVIQNNFATPDLPLLTCLIQHQEFESDSLFQQSELEFAPLRGIPDKSEDTEWLARPSEVSEALFQATSETSSDLVNSCLSISQHPLTGSTFGSQRSFPSEQENNGENATPNAPDELKSLNDSDNYDNALLSFMSWQMEKDSQQPEGNLADKDQVSASAISDVSDESIDAGRNNSFGSACSQDQYWEQEALQQTEACLASKDQTSFPCENTPPPSEMPYSFLRCMLERGKGAPFTSVNHLKDVCLGAPAAVELRPKMDSFESFEGNEHLQKEFSYFFKQKERRDFLVSSQVHAKAPEIKYIGKVAVPNSHEQVSEAYILSRGLEFSKLEASGGPFSTVKSNLDETSEQLYFQEERTQKAASTFGEKNVDATENVAFEAVIASIESSKQESPIRGIQTDINKPLADDSQEREPPKSDLSPLNYNDENSFMDKLKHPKYQSTPGVFEPAASKPLLHKEDDGGSSLSRDPDLKSPPNAPQNILKGLQGKAESGIVTSYGDAEYSSLYKTADVHSERLAELQREVDHSNLGISQTFPTPLPSFVPQEPTSESNYPFPRLRMLRISPDTLPTALTAGDTSKGGKVAISQSKLKPDITNTLEDSDIAAHSSLSFEGLSHFAVTPEGHLSEEAPKASAHLGLANQNTGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVSAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLSTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVSPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVSPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQDGYRTDQEPAVLAFPGQADQKNGLSTMTPTSYSRREKPGIFYQQVPTGGYLPEEIPKAPAAPTLSNQQKLPTGVSTSYSQSDKPGVFYQHALTGGRLPENIMKTSAAPGTTDQKFDVPVSPPTSYTGPTVFYQQELPKSHLSEETVRGSALPGPAAQNIGITALPSASYSHGEKPHTFYHQAFPESYLNHPAWKVSVAPGSVDQKIGAAVVPSTYSHDVKPGSFPQEELPDRHFTGETQKVSPVLRPAGQKPEVSTVHSSSYSKGMKPGIFYQHPLSDSRPGKEPLDVLAVSGSAEKTHSPTVTFASQPHKETANAFYQQTLSDSHLTEEALPVYVIPGLRDQKTPLPSELPVSYSHRAKNLPEDVIVSTDSGPADKTADIPTVSSSSYQHKKKPTVPYHQELPDRPVPAGTQKASLVSRSVDQKSGTSHPYGEMPSVFYQQELPDSHSTEKSTKTLIPGPADQKTDLPTVPPTSPSHAEKPIFPYQLTLPGSHLPEDAFKASPVSKSSDELSGISTKTSASYSNKERPSISHQQKFPDSRLTEDAQVSGTTRSEDQKTGTTVSVSPTSYSQKVRPGISYQQVLPSHLSEEALQTSATTRPADQSIAMPIVTSTSSSQREKPQIFYQQALPGSHLPGEPLKVSAAPRPPDQNTGAPAVSSSSYLPGEESIIFYQPGLSGNSLSAETFKSPGISGLTDQKTSIPAGPSASGSHPVREKSIIFYQNDLPTSPLTAETLRVAAVPVPTEQKTGTPAGPSGSHPVDGKFIIFLPDGHLPKEASDVLTSPGAVDLKTGEPPVYSNSYFGEKPIVFHHQALSDSQRTEKGHKVSVVSGPADQKTGLPFITSSYSSLELPDRPLTENTGQVSVVPGPTDQKTAIPTVPSASHSYIERPTVSYQLEFPDRSEKALEVLGGAGPTEQKTEIPVVPSIPYYGERPSGSYQQELPDFPEEALQVLGVAGVVSSSPYSKDEMPLIASQQELPDLTKISLKAVGPGSTDQKTEAQIVSSSSREKPSGFYQQELPNTGEDALGGFVHPGPFVQKVEKATVPLTYHPSQELPASHLPEESLKVSTGSALAAQTPGTPTGLSSSYFHREKFSDVYPKASPDHVLTENSLKASTVPGVSDQNRRPAVSSGSHSHKEKHKISAADLLDDEKSELPTVTHRSYLHRKKPAVSSGIGPDDQKTPLPTAFHGSYLQKVKPLVFIQKQLPDRDHYEDIPKISTVYESTAVNTGVPVPLPVSYAHREKLDTSRGFPQELPDRYLTEDALKVSSYLGQAEQISGLPIVSPGTYSHSEKHQLVSEHVQDNLNSPESYSLIANSIPLNSQIDDGVICKPESSGFGDVGYEETQHIDHGSKTLKEIRTLLMEAENIALKRYNFPAPLVPFRDVNDVSFIKSKKVVCFKDPSVTDICTQREAFTEEVPHVECIQKDIGTQTNLNCRSGVENWEFISSTTIRSPLQEAYSTRVAFDETFRQYEASRSVMRSEPEGCSAGFGNKIFIPMMTFIKSDSSSDTSITDSREEDGFSESDDGCGSVDSLAAHVRYLLQCESSLNQAKQILKNAEEEECRVRAHAWNLKFNLGHDCGYSISELNEDDRRKVEEIKAKLFGHGRATHVSEGLCSPQGIGCVPEAVCGHIVIESHEKGCFRTLTAEQPRPDSRHCVFQSVEPSDSIRGRRSPSSWRGRHINLSRSIDQSNTHLKVWNSFQLHSHPPFEKLAPDDIKISKGVGMPFHTNMDSHPLGLVEPTFVPAKEMDFPSPESMKQFTTSITFSSHGHSKYISDTSVFKIGVTTESSQDTGPSLGVFKSRIPEEQISPRDLKQKIFSPSSLKRQSHSPVTILAEDSRQRHKLPADCEHSHQKQKPLERSGFKASHSVPSVTSNCSNFKGVHFSGKDTIISPDKLSSTLEVKEKNVTVTPDLPSCIFIEGRELFEQSHSPHTDHQMRKYSSPSCPDIASCIFLEQRELFEQCKAPQVDHDNREDHSFFPKCQDYVVADLPSDFLDQQQCRSPDVDDDMRKEQFPLSQGQGWVVEKIQHMPQSHFSNMINVDAKVSNLISQSAPDHCTADSPPPSNRKALSCVRITLCPKTSSKLDSGTLDERFHSLDTASKTKINSKCNFDLRTIPSRSLEPTSKLLTCKPIAKDQESLGFLGPESPLDLEVTQSSLPDSKTISQDLKTKLPQNSQIVTSRQTQVNKSDLEGYSKPEGTPVSADGSPKQSKALFPSSSTKLSSDAITQITTESPEKTTFSSEIFINVEDHGQEVLGPMAQKPPELASVCSVQQITSSHGKDGQPVLLPYKPSGSSKMYYVPQLKTLPSCLDSRSDTTIESSHSGSNDAIAPDFPAEMLGTRDDDLSTTVNIKHTEGIYSKRAVTKVKKPPQKDNAGSGDTTVQDKETENLPDTESIKQKEEIHVKRTIPQEFCPEKEGSLEIDISESECHSAFENTTHSVFRSAKFYFHHPVHLPHEQDFCHESLGRSVFMKHSWKDFFHHHSEHSCLPPPGPIADKTKMDYTRIKSLSINLNLGENEKMHTLKNQAKDPKGKRQTNDQKKDQKVTPELTTQCTMSLNELWNKFQERQKQQKSPGNCDKKELSLVERLDRLAKLLQNPITHSLQASESTQDDSRGGRGVRGWRTGKRQHQQRGKLQRKQCKSLERGHNTGDFRKSRVLSHCGGKSNKIKIEQVKLDKYILRKQPDFDYASNTSSDSRLSEESELLTDSPNIFSSTNSLMDSDVLTQTDRDVTLNERSSSISTIDTARLIQAFGQERLYVSPRRIKLYSSVANQQRRYLEKRCKYSKSALGTGYPQMTSEHTRRRHIQEANHISSDSISSAGSFLTLDSTLYNGETVHMLNKGVQAGNLEIVTGTKKYTRDVGVTFPTPSSSEARLEEDSDVTSWSEEKNKEKRFFSNYLQNKNLRKIKPNSCEGVSWFVPVESRKSGSKKENLPKIYSPGIAWFEPVTKNKPWREPLREQNWQKQCMSRGRLGGPGGDGGRVPLRPFVRATLQEALQLHRPDFISRSGERVKRLKLLVQERKLQSIFQSEREALFNTVRPLPRRVVLTVQSNTPIGKKEMIQRTKRIYEQLPEVKKKREEEKRKSDYKSYRLRAQHYKSKVTNRLLGRKVPWD", "length": 4528, "header": "tr|A0A9J7H5L2-1|A0A9J7H5L2_CRIGR Computationally mapped isoform of Alstrom syndrome protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Alms1 PE=4 SV=1 CANONICAL=A0A9J7H8Q2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H6C7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8Q2/entry#A0A9J7H6C7-1", "sequence": { "sequence": "MELEDLPWPGELEEEEEEEVENASAAATEEEVKAGTSQEILGAEEEEVEEEGPEVGLDLDLNCEFQPQESTDEEEDEMAKAWLQAHPAHTVGACPPLPPPRHVYAPVEHLSETERAESWNHLPQERDPSQTLETSQTETDVRIEGTKVTDFPSQEGGELAQAERPVTEPKLNFLCSPLIVIQNNFATPDLPLLTCLIQHQEFESDSLFQQSELEFAPLRGIPDKSEDTEWLARPSEVSEALFQATSETSSDLVNSCLSISQHPLTGSTFGSQRSFPSEQENNGENATPNAPDELKSLNDSDNYDNALLSFMSWQMEKDSQQPEGNLADKDQVSASAISDVSDESIDAGRNNSFGSACSQDQYWEQEALQQTEACLASKDQTSFPCENTPPPSEMPYSFLRCMLERGKGAPFTSVNHLKDVCLGAPAAVELRPKMDSFESFEGNEHLQKEFSYFFKQKERRDFLVSSQVHAKAPEIKYIGKVAVPNSHEQVSEAYILSRGLEFSKLEASGGPFSTVKSNLDETSEQLYFQEERTQKAASTFGEKNVDATENVAFEAVIASIESSKQESPIRGIQTDINKPLADDSQEREPPKSDLSPLNYNDENSFMDKLKHPKYQSTPGVFEPAASKPLLHKEDDGGSSLSRDPDLKSPPNAPQNILKGLQGKAESGIVTSYGDAEYSSLYKTADVHSERLAELQREVDHSNLGISQTFPTPLPSFVPQEPTSESNYPFPRLRMLRISPDTLPTALTAGDTSKGGKVAISQSKLKPDITNTLEDSDIAAHSSLSFEGLSHFAVTPEGHLSEEAPKASAHLGLANQNTGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVSAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLSTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVSPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVSPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQDGYRTDQEPAVLAFPGQADQKNGLSTMTPTSYSRREKPGIFYQQVPTGGYLPEEIPKAPAAPTLSNQQKLPTGVSTSYSQSDKPGVFYQHALTGGRLPENIMKTSAAPGTTDQKFDVPVSPPTSYTGPTVFYQQELPKSHLSEETVRGSALPGPAAQNIGITALPSASYSHGEKPHTFYHQAFPESYLNHPAWKVSVAPGSVDQKIGAAVVPSTYSHDVKPGSFPQEELPDRHFTGETQKVSPVLRPAGQKPEVSTVHSSSYSKGMKPGIFYQHPLSDSRPGKEPLDVLAVSGSAEKTHSPTVTFASQPHKETANAFYQQTLSDSHLTEEALPVYVIPGLRDQKTPLPSELPVSYSHRAKNLPEDVIVSTDSGPADKTADIPTVSSSSYQHKKKPTVPYHQELPDRPVPAGTQKASLVSRSVDQKSGTSHPYGEMPSVFYQQELPDSHSTEKSTKTLIPGPADQKTDLPTVPPTSPSHAEKPIFPYQLTLPGSHLPEDAFKASPVSKSSDELSGISTKTSASYSNKERPSISHQQKFPDSRLTEDAQVSGTTRSEDQKTGTTVSVSPTSYSQKVRPGISYQQVLPSHLSEEALQTSATTRPADQSIAMPIVTSTSSSQREKPQIFYQQALPGSHLPGEPLKVSAAPRPPDQNTGAPAVSSSSYLPGEESIIFYQPGLSGNSLSAETFKSPGISGLTDQKTSIPAGPSASGSHPVREKSIIFYQNDLPTSPLTAETLRVAAVPVPTEQKTGTPAGPSGSHPVDGKFIIFLPDGHLPKEASDVLTSPGAVDLKTGEPPVYSNSYFGEKPIVFHHQALSDSQRTEKGHKVSVVSGPADQKTGLPFITSSYSSLELPDRPLTENTGQVSVVPGPTDQKTAIPTVPSASHSYIERPTVSYQLEFPDRSEKALEVLGGAGPTEQKTEIPVVPSIPYYGERPSGSYQQELPDFPEEALQVLGVAGVVSSSPYSKDEMPLIASQQELPDLTKISLKAVGPGSTDQKTEAQIVSSSSREKPSGFYQQELPNTGEDALGGFVHPGPFVQKVEKATVPLTYHPSQELPASHLPEESLKVSTGSALAAQTPGTPTGLSSSYFHREKFSDVYPKASPDHVLTENSLKASTVPGVSDQNRRPAVSSGSHSHKEKHKISAADLLDDEKSELPTVTHRSYLHRKKPAVSSGIGPDDQKTPLPTAFHGSYLQKVKPLVFIQKQLPDRDHYEDIPKISTVYESTAVNTGVPVPLPVSYAHREKLDTSRGFPQELPDRYLTEDALKVSSYLGQAEQISGLPIVSPGTYSHSEKHQLVSEHVQDNLNSPESYSLIANSIPLNSQIDDGVICKPESSGFGDVGYEETQHIDHGSKTLKEIRTLLMEAENIALKRYNFPAPLVPFRDVNDVSFIKSKKVVCFKDPSVTDICTQREAFTEEVPHVECIQKDIGTQTNLNCRSGVENWEFISSTTIRSPLQEAYSTRVAFDETFRQYEASRSVMRSEPEGCSAGFGNKIFIPMMTFIKSDSSSDVSDGCCSWNSNLPESLESVSDVFLNFFPYASSKTSITDSREEDGFSESDDGCGSVDSLAAHVRYLLQCESSLNQAKQILKNAEEEECRVRAHAWNLKFNLGHDCGYSISELNEDDRRKVEEIKAKLFGHGRATHVSEGLCSPQGIGCVPEAVCGHIVIESHEKGCFRTLTAEQPRPDSRHCVFQSVEPSDSIRGRRSPSSWRGRHINLSRSIDQSNTHLKVWNSFQLHSHPPFEKLAPDDIKISKGVGMPFHTNMDSHPLGLVEPTFVPAKEMDFPSPESMKQFTTSITFSSHGHSKYISDTSVFKIGVTTESSQDTGPSLGVFKSRIPEEQISPRDLKQKIFSPSSLKRQSHSPVTILAEDSRQRHKLPADCEHSHQKQKPLERSGFKASHSVPSVTSNCSNFKGVHFSGKDTIISPDKLSSTLEVKEKNVTVTPDLPSCIFIEGRELFEQSHSPHTDHQMRKYSSPSCPDIASCIFLEQRELFEQCKAPQVDHDNREDHSFFPKCQDYVVADLPSDFLDQQQCRSPDVDDDMRKEQFPLSQGQGWVVEKIQHMPQSHFSNMINVDAKVSNLISQSAPDHCTADSPPPSNRKALSCVRITLCPKTSSKLDSGTLDERFHSLDTASKTKINSKCNFDLRTIPSRSLEPTSKLLTCKPIAKDQESLGFLGPESPLDLEVTQSSLPDSKTISQDLKTKLPQNSQIVTSRQTQVNKSDLEGYSKPEGTPVSADGSPKQSKALFPSSSTKLSSDAITQITTESPEKTTFSSEIFINVEDHGQEVLGPMAQKPPELASVCSVQQITSSHGKDGQPVLLPYKPSGSSKMYYVPQLKTLPSCLDSRSDTTIESSHSGSNDAIAPDFPAEMLGTRDDDLSTTVNIKHTEGIYSKRAVTKVKKPPQKDNAGSGDTTVQDKETENLPDTESIKQKEEIHVKRTIPQEFCPEKEGSLEIDISESECHSAFENTTHSVFRSAKFYFHHPVHLPHEQDFCHESLGRSVFMKHSWKDFFHHHSEHSCLPPPGPIADKTKMDYTRIKSLSINLNLGENEKMHTLKNQAKDPKGKRQTNDQKKDQKVTPELTTQCTMSLNELWNKFQERQKQQKSPGNCDKKELSLVERLDRLAKLLQNPITHSLQASESTQDDSRGGRGVRGWRTGKRQHQQRGKLQRKQCKSLERGHNTGDFRKSRVLSHCGGKSNKIKIEQVKLDKYILRKQPDFDYASNTSSDSRLSEESELLTDSPNIFSSTNSLMDSDVLTQTDRDVTLNERSSSISTIDTARLIQAFGQERLYVSPRRIKLYSSVANQQRRYLEKRCKYSKSALGTGYPQMTSEHTRRRHIQEANHISSDSISSAGSFLTLDSTLYNGETVHMLNKGVQAGNLEIVTGTKKYTRDVGVTFPTPSSSEARLEEDSDVTSWSEEKNKEKRFFSNYLQNKNLRKIKPNSCEGVSWFVPVESRKSGSKKENLPKIYSPGIAWFEPVTKNKPWREPLREQNWQKQCMSRGRLGGPGGDGGRVPLRPFVRATLQEALQLHRPDFISRSGERVKRLKLLVQERKLQSIFQSEREALFNTVRPLPRRVVLTVQSNTPIGKKEMIQRTKRIYEQLPEVKKKREEEKRKSDYKSYRLRAQHYKSKVTNRLLGRKVPWD", "length": 4479, "header": "tr|A0A9J7H6C7-1|A0A9J7H6C7_CRIGR Computationally mapped isoform of Alstrom syndrome protein 1 isoform X14 OS=Cricetulus griseus OX=10029 GN=Alms1 PE=4 SV=1 CANONICAL=A0A9J7H8Q2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H7L5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8Q2/entry#A0A9J7H7L5-1", "sequence": { "sequence": "MLRISPDTLPTALTAGDTSKGGKVAISQSKLKPDITNTLEDSDIAAHSSLSFEGLSHFAVTPEGHLSEEAPKASAHLGLANQNTGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVSAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLSTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVSPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVSPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQDGYRTDQEPAVLAFPGQADQKNGLSTMTPTSYSRREKPGIFYQQVPTGGYLPEEIPKAPAAPTLSNQQKLPTGVSTSYSQSDKPGVFYQHALTGGRLPENIMKTSAAPGTTDQKFDVPVSPPTSYTGPTVFYQQELPKSHLSEETVRGSALPGPAAQNIGITALPSASYSHGEKPHTFYHQAFPESYLNHPAWKVSVAPGSVDQKIGAAVVPSTYSHDVKPGSFPQEELPDRHFTGETQKVSPVLRPAGQKPEVSTVHSSSYSKGMKPGIFYQHPLSDSRPGKEPLDVLAVSGSAEKTHSPTVTFASQPHKETANAFYQQTLSDSHLTEEALPVYVIPGLRDQKTPLPSELPVSYSHRAKNLPEDVIVSTDSGPADKTADIPTVSSSSYQHKKKPTVPYHQELPDRPVPAGTQKASLVSRSVDQKSGTSHPYGEMPSVFYQQELPDSHSTEKSTKTLIPGPADQKTDLPTVPPTSPSHAEKPIFPYQLTLPGSHLPEDAFKASPVSKSSDELSGISTKTSASYSNKERPSISHQQKFPDSRLTEDAQVSGTTRSEDQKTGTTVSVSPTSYSQKVRPGISYQQVLPSHLSEEALQTSATTRPADQSIAMPIVTSTSSSQREKPQIFYQQALPGSHLPGEPLKVSAAPRPPDQNTGAPAVSSSSYLPGEESIIFYQPGLSGNSLSAETFKSPGISGLTDQKTSIPAGPSASGSHPVREKSIIFYQNDLPTSPLTAETLRVAAVPVPTEQKTGTPAGPSGSHPVDGKFIIFLPDGHLPKEASDVLTSPGAVDLKTGEPPVYSNSYFGEKPIVFHHQALSDSQRTEKGHKVSVVSGPADQKTGLPFITSSYSSLELPDRPLTENTGQVSVVPGPTDQKTAIPTVPSASHSYIERPTVSYQLEFPDRSEKALEVLGGAGPTEQKTEIPVVPSIPYYGERPSGSYQQELPDFPEEALQVLGVAGVVSSSPYSKDEMPLIASQQELPDLTKISLKAVGPGSTDQKTEAQIVSSSSREKPSGFYQQELPNTGEDALGGFVHPGPFVQKVEKATVPLTYHPSQELPASHLPEESLKVSTGSALAAQTPGTPTGLSSSYFHREKFSDVYPKASPDHVLTENSLKASTVPGVSDQNRRPAVSSGSHSHKEKHKISAADLLDDEKSELPTVTHRSYLHRKKPAVSSGIGPDDQKTPLPTAFHGSYLQKVKPLVFIQKQLPDRDHYEDIPKISTVYESTAVNTGVPVPLPVSYAHREKLDTSRGFPQELPDRYLTEDALKVSSYLGQAEQISGLPIVSPGTYSHSEKHQLVSEHVQDNLNSPESYSLIANSIPLNSQIDDGVICKPESSGFGDVGYEETQHIDHGSKTLKEIRTLLMEAENIALKRYNFPAPLVPFRDVNDVSFIKSKKVVCFKDPSVTDICTQREAFTEEVPHVECIQKDIGTQTNLNCRSGVENWEFISSTTIRSPLQEAYSTRVAFDETFRQYEASRSVMRSEPEGCSAGFGNKIFIPMMTFIKSDSSSDVSDGCCSWNSNLPESLESVSDVFLNFFPYASSKTSITDSREEDGFSESDDGCGSVDSLAAHVRYLLQCESSLNQAKQILKNAEEEECRVRAHAWNLKFNLGHDCGYSISELNEDDRRKVEEIKAKLFGHGRATHVSEGLCSPQGIGCVPEAVCGHIVIESHEKGCFRTLTAEQPRPDSRHCVFQSVEPSDSIRGRRSPSSWRGRHINLSRSIDQSNTHLKVWNSFQLHSHPPFEKLAPDDIKISKGVGMPFHTNMDSHPLGLVEPTFVPAKEMDFPSPESMKQFTTSITFSSHGHSKYISDTSVFKIGVTTESSQDTGPSLGVFKSRIPEEQISPRDLKQKIFSPSSLKRQSHSPVTILAEDSRQRHKLPADCEHSHQKQKPLERSGFKASHSVPSVTSNCSNFKGVHFSGKDTIISPDKLSSTLEVKEKNVTVTPDLPSCIFIEGRELFEQSHSPHTDHQMRKYSSPSCPDIASCIFLEQRELFEQCKAPQVDHDNREDHSFFPKCQDYVVADLPSDFLDQQQCRSPDVDDDMRKEQFPLSQGQGWVVEKIQHMPQSHFSNMINVDAKVSNLISQSAPDHCTADSPPPSNRKALSCVRITLCPKTSSKLDSGTLDERFHSLDTASKTKINSKCNFDLRTIPSRSLEPTSKLLTCKPIAKDQESLGFLGPESPLDLEVTQSSLPDSKTISQDLKTKLPQNSQIVTSRQTQVNKSDLEGYSKPEGTPVSADGSPKQSKALFPSSSTKLSSDAITQITTESPEKTTFSSEIFINVEDHGQEVLGPMAQKPPELASVCSVQQITSSHGKDGQPVLLPYKPSGSSKMYYVPQLKTLPSCLDSRSDTTIESSHSGSNDAIAPDFPAEMLGTRDDDLSTTVNIKHTEGIYSKRAVTKVKKPPQKDNAGSGDTTVQDKETENLPDTESIKQKEEIHVKRTIPQEFCPEKEGSLEIDISESECHSAFENTTHSVFRSAKFYFHHPVHLPHEQDFCHESLGRSVFMKHSWKDFFHHHSEHSCLPPPGPIADKTKMDYTRIKSLSINLNLGENEKMHTLKNQAKDPKGKRQTNDQKKDQKVTPELTTQCTMSLNELWNKFQERQKQQKSPGNCDKKELSLVERLDRLAKLLQNPITHSLQASESTQDDSRGGRGVRGWRTGKRQHQQRGKLQRKQCKSLERGHNTGDFRKSRVLSHCGGKSNKIKIEQVKLDKYILRKQPDFDYASNTSSDSRLSEESELLTDSPNIFSSTNSLMDSDVLTQTDRDVTLNERSSSISTIDTARLIQAFGQERLYVSPRRIKLYSSVANQQRRYLEKRCKYSKSALGTGYPQMTSEHTRRRHIQEANHISSDSISSAGSFLTLDSTLYNGETVHMLNKGVQAGNLEIVTGTKKYTRDVGVTFPTPSSSEARLEEDSDVTSWSEEKNKEKRFFSNYLQNKNLRKIKPNSCEGVSWFVPVESRKSGSKKENLPKIYSPGIAWFEPVTKNKPWREPLREQNWQKQCMSRGRLGGPGGDGGRVPLRPFVRATLQEALQLHRPDFISRSGERVKRLKLLVQERKLQSIFQSEREALFNTVRPLPRRVVLTVQSNTPIGKKEMIQRTKRIYEQLPEVKKKREEEKRKSDYKSYRLRAQHYKSKVTNRLLGRKVPWD", "length": 3828, "header": "tr|A0A9J7H7L5-1|A0A9J7H7L5_CRIGR Computationally mapped isoform of Alstrom syndrome protein 1 isoform X13 OS=Cricetulus griseus OX=10029 GN=Alms1 PE=4 SV=1 CANONICAL=A0A9J7H8Q2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H7R9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8Q2/entry#A0A9J7H7R9-1", "sequence": { "sequence": "MKVSTSDSWVLQDLKQQTFEEVADSSDYNLEGLQGKAESGIVTSYGDAEYSSLYKTADVHSERLAELQREVDHSNLGISQTFPTPLPSFVPQEPTSESNYPFPRLRMLRISPDTLPTALTAGDTSKGGKVAISQSKLKPDITNTLEDSDIAAHSSLSFEGLSHFAVTPEGHLSEEAPKASAHLGLANQNTGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVSAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLSTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVSPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVSPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQDGYRTDQEPAVLAFPGQADQKNGLSTMTPTSYSRREKPGIFYQQVPTGGYLPEEIPKAPAAPTLSNQQKLPTGVSTSYSQSDKPGVFYQHALTGGRLPENIMKTSAAPGTTDQKFDVPVSPPTSYTGPTVFYQQELPKSHLSEETVRGSALPGPAAQNIGITALPSASYSHGEKPHTFYHQAFPESYLNHPAWKVSVAPGSVDQKIGAAVVPSTYSHDVKPGSFPQEELPDRHFTGETQKVSPVLRPAGQKPEVSTVHSSSYSKGMKPGIFYQHPLSDSRPGKEPLDVLAVSGSAEKTHSPTVTFASQPHKETANAFYQQTLSDSHLTEEALPVYVIPGLRDQKTPLPSELPVSYSHRAKNLPEDVIVSTDSGPADKTADIPTVSSSSYQHKKKPTVPYHQELPDRPVPAGTQKASLVSRSVDQKSGTSHPYGEMPSVFYQQELPDSHSTEKSTKTLIPGPADQKTDLPTVPPTSPSHAEKPIFPYQLTLPGSHLPEDAFKASPVSKSSDELSGISTKTSASYSNKERPSISHQQKFPDSRLTEDAQVSGTTRSEDQKTGTTVSVSPTSYSQKVRPGISYQQVLPSHLSEEALQTSATTRPADQSIAMPIVTSTSSSQREKPQIFYQQALPGSHLPGEPLKVSAAPRPPDQNTGAPAVSSSSYLPGEESIIFYQPGLSGNSLSAETFKSPGISGLTDQKTSIPAGPSASGSHPVREKSIIFYQNDLPTSPLTAETLRVAAVPVPTEQKTGTPAGPSGSHPVDGKFIIFLPDGHLPKEASDVLTSPGAVDLKTGEPPVYSNSYFGEKPIVFHHQALSDSQRTEKGHKVSVVSGPADQKTGLPFITSSYSSLELPDRPLTENTGQVSVVPGPTDQKTAIPTVPSASHSYIERPTVSYQLEFPDRSEKALEVLGGAGPTEQKTEIPVVPSIPYYGERPSGSYQQELPDFPEEALQVLGVAGVVSSSPYSKDEMPLIASQQELPDLTKISLKAVGPGSTDQKTEAQIVSSSSREKPSGFYQQELPNTGEDALGGFVHPGPFVQKVEKATVPLTYHPSQELPASHLPEESLKVSTGSALAAQTPGTPTGLSSSYFHREKFSDVYPKASPDHVLTENSLKASTVPGVSDQNRRPAVSSGSHSHKEKHKISAADLLDDEKSELPTVTHRSYLHRKKPAVSSGIGPDDQKTPLPTAFHGSYLQKVKPLVFIQKQLPDRDHYEDIPKISTVYESTAVNTGVPVPLPVSYAHREKLDTSRGFPQELPDRYLTEDALKVSSYLGQAEQISGLPIVSPGTYSHSEKHQLVSEHVQDNLNSPESYSLIANSIPLNSQIDDGVICKPESSGFGDVGYEETQHIDHGSKTLKEIRTLLMEAENIALKRYNFPAPLVPFRDVNDVSFIKSKKVVCFKDPSVTDICTQREAFTEEVPHVECIQKDIGTQTNLNCRSGVENWEFISSTTIRSPLQEAYSTRVAFDETFRQYEASRSVMRSEPEGCSAGFGNKIFIPMMTFIKSDSSSDVSDGCCSWNSNLPESLESVSDVFLNFFPYASSKTSITDSREEDGFSESDDGCGSVDSLAAHVRYLLQCESSLNQAKQILKNAEEEECRVRAHAWNLKFNLGHDCGYSISELNEDDRRKVEEIKAKLFGHGRATHVSEGLCSPQGIGCVPEAVCGHIVIESHEKGCFRTLTAEQPRPDSRHCVFQSVEPSDSIRGRRSPSSWRGRHINLSRSIDQSNTHLKVWNSFQLHSHPPFEKLAPDDIKISKGVGMPFHTNMDSHPLGLVEPTFVPAKEMDFPSPESMKQFTTSITFSSHGHSKYISDTSVFKIGVTTESSQDTGPSLGVFKSRIPEEQISPRDLKQKIFSPSSLKRQSHSPVTILAEDSRQRHKLPADCEHSHQKQKPLERSGFKASHSVPSVTSNCSNFKGVHFSGKDTIISPDKLSSTLEVKEKNVTVTPDLPSCIFIEGRELFEQSHSPHTDHQMRKYSSPSCPDIASCIFLEQRELFEQCKAPQVDHDNREDHSFFPKCQDYVVADLPSDFLDQQQCRSPDVDDDMRKEQFPLSQGQGWVVEKIQHMPQSHFSNMINVDAKVSNLISQSAPDHCTADSPPPSNRKALSCVRITLCPKTSSKLDSGTLDERFHSLDTASKTKINSKCNFDLRTIPSRSLEPTSKLLTCKPIAKDQESLGFLGPESPLDLEVTQSSLPDSKTISQDLKTKLPQNSQIVTSRQTQVNKSDLEGYSKPEGTPVSADGSPKQSKALFPSSSTKLSSDAITQITTESPEKTTFSSEIFINVEDHGQEVLGPMAQKPPELASVCSVQQITSSHGKDGQPVLLPYKPSGSSKMYYVPQLKTLPSCLDSRSDTTIESSHSGSNDAIAPDFPAEMLGTRDDDLSTTVNIKHTEGIYSKRAVTKVKKPPQKDNAGSGDTTVQDKETENLPDTESIKQKEEIHVKRTIPQEFCPEKEGSLEIDISESECHSAFENTTHSVFRSAKFYFHHPVHLPHEQDFCHESLGRSVFMKHSWKDFFHHHSEHSCLPPPGPIADKTKMDYTRIKSLSINLNLGENEKMHTLKNQAKDPKGKRQTNDQKKDQKVTPELTTQCTMSLNELWNKFQERQKQQKSPGNCDKKELSLVERLDRLAKLLQNPITHSLQASESTQDDSRGGRGVRGWRTGKRQHQQRGKLQRKQCKSLERGHNTGDFRKSRVLSHCGGKSNKIKIEQVKLDKYILRKQPDFDYASNTSSDSRLSEESELLTDSPNIFSSTNSLMDSDVLTQTDRDVTLNERSSSISTIDTARLIQAFGQERLYVSPRRIKLYSSVANQQRRYLEKRCKYSKSALGTGYPQMTSEHTRRRHIQEANHISSDSISSAGSFLTLDSTLYNGETVHMLNKGVQAGNLEIVTGTKKYTRDVGVTFPTPSSSEARLEEDSDVTSWSEEKNKEKRFFSNYLQNKNLRKIKPNSCEGVSWFVPVESRKSGSKKENLPKIYSPGIAWFEPVTKNKPWREPLREQNWQKQCMSRGRLGGPGGDGGRVPLRPFVRATLQEALQLHRPDFISRSGERVKRLKLLVQERKLQSIFQSEREALFNTVRPLPRRVVLTVQSNTPIGKKEMIQRTKRIYEQLPEVKKKREEEKRKSDYKSYRLRAQHYKSKVTNRLLGRKVPWD", "length": 3934, "header": "tr|A0A9J7H7R9-1|A0A9J7H7R9_CRIGR Computationally mapped isoform of Alstrom syndrome protein 1 isoform X11 OS=Cricetulus griseus OX=10029 GN=Alms1 PE=4 SV=1 CANONICAL=A0A9J7H8Q2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H8Q2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8Q2/entry#A0A9J7H8Q2-1", "sequence": { "sequence": "MELEDLPWPGELEEEEEEEVENASAAATEEEVKAGTSQEILGAEEEEVEEEGPEVGLDLDLNCEFQPQESTDEEEDEMAKAWLQAHPAHTVGACPPLPPPRHVYAPVEHLSETERAESWNHLPQERDPSQTLETSQTETDVRIEGTKVTDFPSQEGGELAQAERPVTEPKLNFLCSPLIVIQNNFATPDLPLLTCLIQHQEFESDSLFQQSELEFAPLRGIPDKSEDTEWLARPSEVSEALFQATSETSSDLVNSCLSISQHPLTGSTFGSQRSFPSEQENNGENATPNAPDELKSLNDSDNYDNALLSFMSWQMEKDSQQPEGNLADKDQVSASAISDVSDESIDAGRNNSFGSACSQDQYWEQEALQQTEACLASKDQTSFPCENTPPPSEMPYSFLRCMLERGKGAPFTSVNHLKDVCLGAPAAVELRPKMDSFESFEGNEHLQKEFSYFFKQKERRDFLVSSQVHAKAPEIKYIGKVAVPNSHEQVSEAYILSRGLEFSKLEASGGPFSTVKSNLDETSEQLYFQEERTQKAASTFGEKNVDATENVAFEAVIASIESSKQESPIRGIQTDINKPLADDSQEREPPKSDLSPLNYNDENSFMDKLKHPKYQSTPGVFEPAASKPLLHKEDDGGSSLSRDPDLKSPPNAPQNILKGLQGKAESGIVTSYGDAEYSSLYKTADVHSERLAELQREVDHSNLGISQTFPTPLPSFVPQEPTSESNYPFPRLRMLRISPDTLPTALTAGDTSKGGKVAISQSKLKPDITNTLEDSDIAAHSSLSFEGLSHFAVTPEGHLSEEAPKASAHLGLANQNTGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVSAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLSTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVSPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVSPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQDGYRTDQEPAVLAFPGQADQKNGLSTMTPTSYSRREKPGIFYQQVPTGGYLPEEIPKAPAAPTLSNQQKLPTGVSTSYSQSDKPGVFYQHALTGGRLPENIMKTSAAPGTTDQKFDVPVSPPTSYTGPTVFYQQELPKSHLSEETVRGSALPGPAAQNIGITALPSASYSHGEKPHTFYHQAFPESYLNHPAWKVSVAPGSVDQKIGAAVVPSTYSHDVKPGSFPQEELPDRHFTGETQKVSPVLRPAGQKPEVSTVHSSSYSKGMKPGIFYQHPLSDSRPGKEPLDVLAVSGSAEKTHSPTVTFASQPHKETANAFYQQTLSDSHLTEEALPVYVIPGLRDQKTPLPSELPVSYSHRAKNLPEDVIVSTDSGPADKTADIPTVSSSSYQHKKKPTVPYHQELPDRPVPAGTQKASLVSRSVDQKSGTSHPYGEMPSVFYQQELPDSHSTEKSTKTLIPGPADQKTDLPTVPPTSPSHAEKPIFPYQLTLPGSHLPEDAFKASPVSKSSDELSGISTKTSASYSNKERPSISHQQKFPDSRLTEDAQVSGTTRSEDQKTGTTVSVSPTSYSQKVRPGISYQQVLPSHLSEEALQTSATTRPADQSIAMPIVTSTSSSQREKPQIFYQQALPGSHLPGEPLKVSAAPRPPDQNTGAPAVSSSSYLPGEESIIFYQPGLSGNSLSAETFKSPGISGLTDQKTSIPAGPSASGSHPVREKSIIFYQNDLPTSPLTAETLRVAAVPVPTEQKTGTPAGPSGSHPVDGKFIIFLPDGHLPKEASDVLTSPGAVDLKTGEPPVYSNSYFGEKPIVFHHQALSDSQRTEKGHKVSVVSGPADQKTGLPFITSSYSSLELPDRPLTENTGQVSVVPGPTDQKTAIPTVPSASHSYIERPTVSYQLEFPDRSEKALEVLGGAGPTEQKTEIPVVPSIPYYGERPSGSYQQELPDFPEEALQVLGVAGVVSSSPYSKDEMPLIASQQELPDLTKISLKAVGPGSTDQKTEAQIVSSSSREKPSGFYQQELPNTGEDALGGFVHPGPFVQKVEKATVPLTYHPSQELPASHLPEESLKVSTGSALAAQTPGTPTGLSSSYFHREKFSDVYPKASPDHVLTENSLKASTVPGVSDQNRRPAVSSGSHSHKEKHKISAADLLDDEKSELPTVTHRSYLHRKKPAVSSGIGPDDQKTPLPTAFHGSYLQKVKPLVFIQKQLPDRDHYEDIPKISTVYESTAVNTGVPVPLPVSYAHREKLDTSRGFPQELPDRYLTEDALKVSSYLGQAEQISGLPIVSPGTYSHSEKHQLVSEHVQDNLNSPESYSLIANSIPLNSQIDDGVICKPESSGFGDVGYEETQHIDHGSKTLKEIRTLLMEAENIALKRYNFPAPLVPFRDVNDVSFIKSKKVVCFKDPSVTDICTQREAFTEEVPHVECIQKDIGTQTNLNCRSGVENWEFISSTTIRSPLQEAYSTRVAFDETFRQYEASRSVMRSEPEGCSAGFGNKIFIPMMTFIKSDSSSDVSDGCCSWNSNLPESLESVSDVFLNFFPYASSKTSITDSREEDGFSESDDGCGSVDSLAAHVRYLLQCESSLNQAKQILKNAEEEECRVRAHAWNLKFNLGHDCGYSISELNEDDRRKVEEIKAKLFGHGRATHVSEGLCSPQGIGCVPEAVCGHIVIESHEKGCFRTLTAEQPRPDSRHCVFQSVEPSDSIRGRRSPSSWRGRHINLSRSIDQSNTHLKVWNSFQLHSHPPFEKLAPDDIKISKGVGMPFHTNMDSHPLGLVEPTFVPAKEMDFPSPESMKQFTTSITFSSHGHSKYISDTSVFKIGVTTESSQDTGPSLGVFKSRIPEEQISPRDLKQKIFSPSSLKRQSHSPVTILAEDSRQRHKLPADCEHSHQKQKPLERSGFKASHSVPSVTSNCSNFKGVHFSGKDTIISPDKLSSTLEVKEKNVTVTPDLPSCIFIEGRELFEQSHSPHTDHQMRKYSSPSCPDIASCIFLEQRELFEQCKAPQVDHDNREDHSFFPKCQDYVVADLPSDFLDQQQCRSPDVDDDMRKEQFPLSQGQGWVVEKIQHMPQSHFSNMINVDAKVSNLISQSAPDHCTADSPPPSNRKALSCVRITLCPKTSSKLDSGTLDERFHSLDTASKTKINSKCNFDLRTIPSRSLEPTSKLLTCKPIAKDQESLGFLGPESPLDLEVTQSSLPDSKTISQDLKTKLPQNSQIVTSRQTQVNKSDLEGYSKPEGTPVSADGSPKQSKALFPSSSTKLSSDAITQITTESPEKTTFSSEIFINVEDHGQEVLGPMAQKPPELASVCSVQQITSSHGKDGQPVLLPYKPSGSSKMYYVPQLKTLPSCLDSRSDTTIESSHSGSNDAIAPDFPAEMLGTRDDDLSTTVNIKHTEGIYSKRAVTKVKKPPQKDNAGSGDTTVQDKETENLPDTESIKQKEEIHVKRTIPQEFCPEKEGSLEIDISESECHSAFENTTHSVFRSAKFYFHHPVHLPHEQDFCHESLGRSVFMKHSWKDFFHHHSEHSCLPPPGPIADKTKMDYTRIKSLSINLNLGENEKMHTLKNQAKDPKGKRQTNDQKKDQKVTPELTTQCTMSLNELWNKFQERQKQQKSPGNCDKKELSLVERLDRLAKLLQNPITHSLQASESTQDDSRGGRGVRGWRTGKRQHQQRGKLQRKQCKSLERGHNTGDFRKSRVLSHCGGKSNKIKIEQVKLDKYILRKQPDFDYASNTSSDSRLSEESELLTDSPNIFSSTNSLMDSDVLTQTDRDVTLNERSSSISTIDTARLIQAFGQERLYVSPRRIKLYSSVANQQRRYLEKRCKYSKSALGTGYPQMTSEHTRRRHIQEANHISSDSISSAGSFLTLDSTLYNGETVHMLNKGVQAGNLEIVTGTKKYTRDVGVTFPTPSSSEARLEEDSDVTSWSEEKNKEKRFFSNYLQNKNLRKIKPNSCEGVSWFVPVESRKSGSKKENLPKIYSPGIAWFEPVTKNKPWREPLREQNWQKQCMSRGRLGGPGGDGGRVPLRPFVRATLQEALQLHRPDFISRSGERVKRLKLLVQERKLQSIFQSEREALFNTVRPLPRRVVLTVQSNTPIGKKEMIQRTKRIYEQLPEVKKKREEEKRKSDYKSYRLRAQHYKSKVTNRLLGRKVPWD", "length": 4561, "header": "tr|A0A9J7H8Q2-1|A0A9J7H8Q2_CRIGR Isoform 1 of Alstrom syndrome protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Alms1 PE=4 SV=1 CANONICAL=A0A9J7H8Q2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K1A0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8Q2/entry#A0A9J7K1A0-1", "sequence": { "sequence": "MELEDLPWPGELEEEEEEEVENASAAATEEEVKAGTSQEILGAEEEEVEEEGPEVGLDLDLNCEFQPQESTDEEEDEMAKAWLQAHPAHTVGACPPLPPPRHVYAPVEHLSETERAESWNHLPQERDPSQTLETSQTETDVRIEGTKVTDFPSQEGGELAQAERPVTEPKLNFLCSPLIVIQNNFATPDLPLLTCLIQHQEFESDSLFQQSELEFAPLRGIPDKSEDTEWLARPSEVSEALFQATSETSSDLVNSCLSISQHPLTGSTFGSQRSFPSEQENNGENATPNAPDELKSLNDSDNYDNALLSFMSWQMEKDSQQPEGNLADKDQVSASAISDVSDESIDAGRNNSFGSACSQDQYWEQEALQQTEACLASKDQTSFPCENTPPPSEMPYSFLRCMLERGKGAPFTSVNHLKDVCLGAPAAVELRPKMDSFESFEGNEHLQKEFSYFFKQKERRDFLVSSQVHAKAPEIKYIGKVAVPNSHEQVSEAYILSRGLEFSKLEASGGPFSTVKSNLDETSEQLYFQEERTQKAASTFEGLQGKAESGIVTSYGDAEYSSLYKTADVHSERLAELQREVDHSNLGISQTFPTPLPSFVPQEPTSESNYPFPRLRMLRISPDTLPTALTAGDTSKGGKVAISQSKLKPDITNTLEDSDIAAHSSLSFEGLSHFAVTPEGHLSEEAPKASAHLGLANQNTGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVSAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLSTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVSPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVSPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQDGYRTDQEPAVLAFPGQADQKNGLSTMTPTSYSRREKPGIFYQQVPTGGYLPEEIPKAPAAPTLSNQQKLPTGVSTSYSQSDKPGVFYQHALTGGRLPENIMKTSAAPGTTDQKFDVPVSPPTSYTGPTVFYQQELPKSHLSEETVRGSALPGPAAQNIGITALPSASYSHGEKPHTFYHQAFPESYLNHPAWKVSVAPGSVDQKIGAAVVPSTYSHDVKPGSFPQEELPDRHFTGETQKVSPVLRPAGQKPEVSTVHSSSYSKGMKPGIFYQHPLSDSRPGKEPLDVLAVSGSAEKTHSPTVTFASQPHKETANAFYQQTLSDSHLTEEALPVYVIPGLRDQKTPLPSELPVSYSHRAKNLPEDVIVSTDSGPADKTADIPTVSSSSYQHKKKPTVPYHQELPDRPVPAGTQKASLVSRSVDQKSGTSHPYGEMPSVFYQQELPDSHSTEKSTKTLIPGPADQKTDLPTVPPTSPSHAEKPIFPYQLTLPGSHLPEDAFKASPVSKSSDELSGISTKTSASYSNKERPSISHQQKFPDSRLTEDAQVSGTTRSEDQKTGTTVSVSPTSYSQKVRPGISYQQVLPSHLSEEALQTSATTRPADQSIAMPIVTSTSSSQREKPQIFYQQALPGSHLPGEPLKVSAAPRPPDQNTGAPAVSSSSYLPGEESIIFYQPGLSGNSLSAETFKSPGISGLTDQKTSIPAGPSASGSHPVREKSIIFYQNDLPTSPLTAETLRVAAVPVPTEQKTGTPAGPSGSHPVDGKFIIFLPDGHLPKEASDVLTSPGAVDLKTGEPPVYSNSYFGEKPIVFHHQALSDSQRTEKGHKVSVVSGPADQKTGLPFITSSYSSLELPDRPLTENTGQVSVVPGPTDQKTAIPTVPSASHSYIERPTVSYQLEFPDRSEKALEVLGGAGPTEQKTEIPVVPSIPYYGERPSGSYQQELPDFPEEALQVLGVAGVVSSSPYSKDEMPLIASQQELPDLTKISLKAVGPGSTDQKTEAQIVSSSSREKPSGFYQQELPNTGEDALGGFVHPGPFVQKVEKATVPLTYHPSQELPASHLPEESLKVSTGSALAAQTPGTPTGLSSSYFHREKFSDVYPKASPDHVLTENSLKASTVPGVSDQNRRPAVSSGSHSHKEKHKISAADLLDDEKSELPTVTHRSYLHRKKPAVSSGIGPDDQKTPLPTAFHGSYLQKVKPLVFIQKQLPDRDHYEDIPKISTVYESTAVNTGVPVPLPVSYAHREKLDTSRGFPQELPDRYLTEDALKVSSYLGQAEQISGLPIVSPGTYSHSEKHQLVSEHVQDNLNSPESYSLIANSIPLNSQIDDGVICKPESSGFGDVGYEETQHIDHGSKTLKEIRTLLMEAENIALKRYNFPAPLVPFRDVNDVSFIKSKKVVCFKDPSVTDICTQREAFTEEVPHVECIQKDIGTQTNLNCRSGVENWEFISSTTIRSPLQEAYSTRVAFDETFRQYEASRSVMRSEPEGCSAGFGNKIFIPMMTFIKSDSSSDVSDGCCSWNSNLPESLESVSDVFLNFFPYASSKTSITDSREEDGFSESDDGCGSVDSLAAHVRYLLQCESSLNQAKQILKNAEEEECRVRAHAWNLKFNLGHDCGYSISELNEDDRRKVEEIKAKLFGHGRATHVSEGLCSPQGIGCVPEAVCGHIVIESHEKGCFRTLTAEQPRPDSRHCVFQSVEPSDSIRGRRSPSSWRGRHINLSRSIDQSNTHLKVWNSFQLHSHPPFEKLAPDDIKISKGVGMPFHTNMDSHPLGLVEPTFVPAKEMDFPSPESMKQFTTSITFSSHGHSKYISDTSVFKIGVTTESSQDTGPSLGVFKSRIPEEQISPRDLKQKIFSPSSLKRQSHSPVTILAEDSRQRHKLPADCEHSHQKQKPLERSGFKASHSVPSVTSNCSNFKGVHFSGKDTIISPDKLSSTLEVKEKNVTVTPDLPSCIFIEGRELFEQSHSPHTDHQMRKYSSPSCPDIASCIFLEQRELFEQCKAPQVDHDNREDHSFFPKCQDYVVADLPSDFLDQQQCRSPDVDDDMRKEQFPLSQGQGWVVEKIQHMPQSHFSNMINVDAKVSNLISQSAPDHCTADSPPPSNRKALSCVRITLCPKTSSKLDSGTLDERFHSLDTASKTKINSKCNFDLRTIPSRSLEPTSKLLTCKPIAKDQESLGFLGPESPLDLEVTQSSLPDSKTISQDLKTKLPQNSQIVTSRQTQVNKSDLEGYSKPEGTPVSADGSPKQSKALFPSSSTKLSSDAITQITTESPEKTTFSSEIFINVEDHGQEVLGPMAQKPPELASVCSVQQITSSHGKDGQPVLLPYKPSGSSKMYYVPQLKTLPSCLDSRSDTTIESSHSGSNDAIAPDFPAEMLGTRDDDLSTTVNIKHTEGIYSKRAVTKVKKPPQKDNAGSGDTTVQDKETENLPDTESIKQKEEIHVKRTIPQEFCPEKEGSLEIDISESECHSAFENTTHSVFRSAKFYFHHPVHLPHEQDFCHESLGRSVFMKHSWKDFFHHHSEHSCLPPPGPIADKTKMDYTRIKSLSINLNLGENEKMHTLKNQAKDPKGKRQTNDQKKDQKVTPELTTQCTMSLNELWNKFQERQKQQKSPGNCDKKELSLVERLDRLAKLLQNPITHSLQASESTQDDSRGGRGVRGWRTGKRQHQQRGKLQRKQCKSLERGHNTGDFRKSRVLSHCGGKSNKIKIEQVKLDKYILRKQPDFDYASNTSSDSRLSEESELLTDSPNIFSSTNSLMDSDVLTQTDRDVTLNERSSSISTIDTARLIQAFGQERLYVSPRRIKLYSSVANQQRRYLEKRCKYSKSALGTGYPQMTSEHTRRRHIQEANHISSDSISSAGSFLTLDSTLYNGETVHMLNKGVQAGNLEIVTGTKKYTRDVGVTFPTPSSSEARLEEDSDVTSWSEEKNKEKRFFSNYLQNKNLRKIKPNSCEGVSWFVPVESRKSGSKKENLPKIYSPGIAWFEPVTKNKPWREPLREQNWQKQCMSRGRLGGPGGDGGRVPLRPFVRATLQEALQLHRPDFISRSGERVKRLKLLVQERKLQSIFQSEREALFNTVRPLPRRVVLTVQSNTPIGKKEMIQRTKRIYEQLPEVKKKREEEKRKSDYKSYRLRAQHYKSKVTNRLLGRKVPWD", "length": 4444, "header": "tr|A0A9J7K1A0-1|A0A9J7H8Q2_CRIGR Computationally mapped isoform of Alstrom syndrome protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Alms1 PE=4 SV=1 CANONICAL=A0A9J7H8Q2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K8Z8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8Q2/entry#A0A9J7K8Z8-1", "sequence": { "sequence": "MELEDLPWPGELEEEEEEEVENASAAATEEEVKAGTSQEILGAEEEEVEEEGPEVGLDLDLNCEFQPQESTDEEEDEMAKAWLQAHPAHTVGACPPLPPPRHVYAPVEHLSETERAESWNHLPQERDPSQTLETSQTETDVRIEGTKVTDFPSQEGGELAQAERPVTEPKLNFLCSPLIVIQNNFATPDLPLLTCLIQHQEFESDSLFQQSELEFAPLRGIPDKSEDTEWLARPSEVSEALFQATSETSSDLVNSCLSISQHPLTGSTFGSQRSFPSEQENNGENATPNAPDELKSLNDSDNYDNALLSFMSWQMEKDSQQPEGNLADKDQVSASAISDVSDESIDAGRNNSFGSACSQDQYWEQEALQQTEACLASKDQTSFPCENTPPPSEMPYSFLRCMLERGKGAPFTSVNHLKDVCLGAPAAVELRPKMDSFESFEGNEHLQKEFSYFFKQKERRDFLVSSQVHAKAPEIKYIGKVAVPNSHEQVSEAYILSRGLEFSKLEASGGPFSTVKSNLDETSEQLYFQEERTQKAASTFGEKNVDATENVAFEAVIASIESSKQESPIRGIQTDINKPLADDSQEREPPKSDLSPLNYNDENSFMDKLKHPKYQSTPGVFEPAASKPLLHKEDDGGSSLSRDPDLKSPPNAPQNILKGLQGKAESGIVTSYGDAEYSSLYKTADVHSERLAELQREVDHSNLGISQTFPTPLPSFVPQEPTSESNYPFPRLRMLRISPDTLPTALTAGDTSKGGKVAISQSKLKPDITNTLEDSDIAAHSSLSFEGLSHFAVTPEGHLSEEAPKASAHLGLANQNTGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVSAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLSTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVSPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVSPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQDGYRTDQEPAVLAFPGQADQKNGLSTMTPTSYSRREKPGIFYQQVPTGGYLPEEIPKAPAAPTLSNQQKLPTGVSTSYSQSDKPGVFYQHALTGGRLPENIMKTSAAPGTTDQKFDVPVSPPTSYTGPTVFYQQELPKSHLSEETVRGSALPGPAAQNIGITALPSASYSHGEKPHTFYHQAFPESYLNHPAWKVSVAPGSVDQKIGAAVVPSTYSHDVKPGSFPQEELPDRHFTGETQKVSPVLRPAGQKPEVSTVHSSSYSKGMKPGIFYQHPLSDSRPGKEPLDVLAVSGSAEKTHSPTVTFASQPHKETANAFYQQTLSDSHLTEEALPVYVIPGLRDQKTPLPSELPVSYSHRAKNLPEDVIVSTDSGPADKTADIPTVSSSSYQHKKKPTVPYHQELPDRPVPAGTQKASLVSRSVDQKSGTSHPYGEMPSVFYQQELPDSHSTEKSTKTLIPGPADQKTDLPTVPPTSPSHAEKPIFPYQLTLPGSHLPEDAFKASPVSKSSDELSGISTKTSASYSNKERPSISHQQKFPDSRLTEDAQVSGTTRSEDQKTGTTVSVSPTSYSQKVRPGISYQQVLPSHLSEEALQTSATTRPADQSIAMPIVTSTSSSQREKPQIFYQQALPGSHLPGEPLKVSAAPRPPDQNTGAPAVSSSSYLPGEESIIFYQPGLSGNSLSAETFKSPGISGLTDQKTSIPAGPSASGSHPVREKSIIFYQNDLPTSPLTAETLRVAAVPVPTEQKTGTPAGPSGSHPVDGKFIIFLPDGHLPKEASDVLTSPGAVDLKTGEPPVYSNSYFGEKPIVFHHQALSDSQRTEKGHKVSVVSGPADQKTGLPFITSSYSSLELPDRPLTENTGQVSVVPGPTDQKTAIPTVPSASHSYIERPTVSYQLEFPDRSEKALEVLGGAGPTEQKTEIPVVPSIPYYGERPSGSYQQELPDFPEEALQVLGVAGVVSSSPYSKDEMPLIASQQELPDLTKISLKAVGPGSTDQKTEAQIVSSSSREKPSGFYQQELPNTGEDALGGFVHPGPFVQKVEKATVPLTYHPSQELPASHLPEESLKVSTGSALAAQTPGTPTGLSSSYFHREKFSDVYPKASPDHVLTENSLKASTVPGVSDQNRRPAVSSGSHSHKEKHKISAADLLDDEKSELPTVTHRSYLHRKKPAVSSGIGPDDQKTPLPTAFHGSYLQKVKPLVFIQKQLPDRDHYEDIPKISTVYESTAVNTGVPVPLPVSYAHREKLDTSRGFPQELPDRYLTEDALKVSSYLGQAEQISGLPIVSPGTYSHSEKHQLVSEHVQDNLNSPESYSLIANSIPLNSQIDDGVICKPESSGFGDVGYEETQHIDHGSKTLKEIRTLLMEAENIALKRYNFPAPLVPFRDVNDVSFIKSKKVVCFKDPSVTDICTQREAFTEEVPHVECIQKDIGTQTNLNCRSGVENWEFISSTTIRSPLQEAYSTRVAFDETFRQYEASRSVMRSEPEGCSAGFGNKIFIPMMTFIKSDSSSDVSDGCCSWNSNLPESLESVSDVFLNFFPYASSKTSITDSREEDGFSESDDGCGSVDSLAAHVRYLLQCESSLNQAKQILKNAEEEECRVRAHAWNLKFNLGHDCGYSISELNEDDRRKVEEIKAKLFGHGRATHVSEGLCSPQGIGCVPEAVCGHIVIESHEKGCFRTLTAEQPRPDSRHCVFQSVEPSDSIRGRRSPSSWRGRHINLSRSIDQSNTHLKVWNSFQLHSHPPFEKLAPDDIKISKGVGMPFHTNMDSHPLGLVEPTFVPAKEMDFPSPESMKQFTTSITFSSHGHSKYISDTSVFKIGVTTESSQDTGPSLGVFKSRIPEEQISPRDLKQKIFSPSSLKRQSHSPVTILAEDSRQRHKLPADCEHSHQKQKPLERSGFKASHSVPSVTSNCSNFKGVHFSGRELFEQSHSPHTDHQMRKYSSPSCPDIASCIFLEQRELFEQCKAPQVDHDNREDHSFFPKCQDYVVADLPSDFLDQQQCRSPDVDDDMRKEQFPLSQGQGWVVEKIQHMPQSHFSNMINVDAKVSNLISQSAPDHCTADSPPPSNRKALSCVRITLCPKTSSKLDSGTLDERFHSLDTASKTKINSKCNFDLRTIPSRSLEPTSKLLTCKPIAKDQESLGFLGPESPLDLEVTQSSLPDSKTISQDLKTKLPQNSQIVTSRQTQVNKSDLEGYSKPEGTPVSADGSPKQSKALFPSSSTKLSSDAITQITTESPEKTTFSSEIFINVEDHGQEVLGPMAQKPPELASVCSVQQITSSHGKDGQPVLLPYKPSGSSKMYYVPQLKTLPSCLDSRSDTTIESSHSGSNDAIAPDFPAEMLGTRDDDLSTTVNIKHTEGIYSKRAVTKVKKPPQKDNAGSGDTTVQDKETENLPDTESIKQKEEIHVKRTIPQEFCPEKEGSLEIDISESECHSAFENTTHSVFRSAKFYFHHPVHLPHEQDFCHESLGRSVFMKHSWKDFFHHHSEHSCLPPPGPIADKTKMDYTRIKSLSINLNLGENEKMHTLKNQAKDPKGKRQTNDQKKDQKVTPELTTQCTMSLNELWNKFQERQKQQKSPGNCDKKELSLVERLDRLAKLLQNPITHSLQASESTQDDSRGGRGVRGWRTGKRQHQQRGKLQRKQCKSLERGHNTGDFRKSRVLSHCGGKSNKIKIEQVKLDKYILRKQPDFDYASNTSSDSRLSEESELLTDSPNIFSSTNSLMDSDVLTQTDRDVTLNERSSSISTIDTARLIQAFGQERLYVSPRRIKLYSSVANQQRRYLEKRCKYSKSALGTGYPQMTSEHTRRRHIQEANHISSDSISSAGSFLTLDSTLYNGETVHMLNKGVQAGNLEIVTGTKKYTRDVGVTFPTPSSSEARLEEDSDVTSWSEEKNKEKRFFSNYLQNKNLRKIKPNSCEGVSWFVPVESRKSGSKKENLPKIYSPGIAWFEPVTKNKPWREPLREQNWQKQCMSRGRLGGPGGDGGRVPLRPFVRATLQEALQLHRPDFISRSGERVKRLKLLVQERKLQSIFQSEREALFNTVRPLPRRVVLTVQSNTPIGKKEMIQRTKRIYEQLPEVKKKREEEKRKSDYKSYRLRAQHYKSKVTNRLLGRKVPWD", "length": 4526, "header": "tr|A0A9J7K8Z8-1|A0A9J7H8Q2_CRIGR Computationally mapped isoform of Alstrom syndrome protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Alms1 PE=4 SV=1 CANONICAL=A0A9J7H8Q2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KAY5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8Q2/entry#A0A9J7KAY5-1", "sequence": { "sequence": "MELEDLPWPGELEEEEEEEVENASAAATEEEVKAGTSQEILGAEEEEVEEEGPEVGLDLDLNCEFQPQESTDEEEDEMAKAWLQAHPAHTVGACPPLPPPRHVYAPVEHLSETERAESWNHLPQERDPSQTLETSQTETDVRIEGTKVTDFPSQEGGELAQAERPVTEPKLNFLCSPLIVIQNNFATPDLPLLTCLIQHQEFESDSLFQQSELEFAPLRGIPDKSEDTEWLARPSEVSEALFQATSETSSDLVNSCLSISQHPLTGSTFGSQRSFPSEQENNGENATPNAPDELKSLNDSDNYDNALLSFMSWQMEKDSQQPEGNLADKDQVSASAISDVSDESIDAGRNNSFGSACSQDQYWEQEALQQTEACLASKDQTSFPCENTPPPSEMPYSFLRCMLERGKGAPFTSVNHLKDVCLGAPAAVELRPKMDSFESFEGNEHLQKEFSYFFKQKERRDFLVSSQVHAKAPEIKYIGKVAVPNSHEQVSEAYILSRGLEFSKLEASGGPFSTVKSNLDETSEQLYFQEERTQKAASTFGEKNVDATENVAFEAVIASIESSKQESPIRGIQTDINKPLADDSQEREPPKSDLSPLNYNDENSFMDKLKHPKYQSTPGVFEPAASKPLLHKEDDGGSSLSRDPDLKSPPNAPQNILKGLQGKAESGIVTSYGDAEYSSLYKTADVHSERLAELQREVDHSNLGISQTFPTPLPSFVPQEPTSESNYPFPRLRMLRISPDTLPTALTAGDTSKGGKVAISQSKLKPDITNTLEDSDIAAHSSLSFEGLSHFAVTPEGHLSEEAPKASAHLGLANQNTGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVSAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLSTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVSPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVSPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQDGYRTDQEPAVLAFPGQADQKNGLSTMTPTSYSRREKPGIFYQQVPTGGYLPEEIPKAPAAPTLSNQQKLPTGVSTSYSQSDKPGVFYQHALTGGRLPENIMKTSAAPGTTDQKFDVPVSPPTSYTGPTVFYQQELPKSHLSEETVRGSALPGPAAQNIGITALPSASYSHGEKPHTFYHQAFPESYLNHPAWKVSVAPGSVDQKIGAAVVPSTYSHDVKPGSFPQEELPDRHFTGETQKVSPVLRPAGQKPEVSTVHSSSYSKGMKPGIFYQHPLSDSRPGKEPLDVLAVSGSAEKTHSPTVTFASQPHKETANAFYQQTLSDSHLTEEALPVYVIPGLRDQKTPLPSELPVSYSHRAKNLPEDVIVSTDSGPADKTADIPTVSSSSYQHKKKPTVPYHQELPDRPVPAGTQKASLVSRSVDQKSGTSHPYGEMPSVFYQQELPDSHSTEKSTKTLIPGPADQKTDLPTVPPTSPSHAEKPIFPYQLTLPGSHLPEDAFKASPVSKSSDELSGISTKTSASYSNKERPSISHQQKFPDSRLTEDAQVSGTTRSEDQKTGTTVSVSPTSYSQKVRPGISYQQVLPSHLSEEALQTSATTRPADQSIAMPIVTSTSSSQREKPQIFYQQALPGSHLPGEPLKVSAAPRPPDQNTGAPAVSSSSYLPGEESIIFYQPGLSGNSLSAETFKSPGISGLTDQKTSIPAGPSASGSHPVREKSIIFYQNDLPTSPLTAETLRVAAVPVPTEQKTGTPAGPSGSHPVDGKFIIFLPDGHLPKEASDVLTSPGAVDLKTGEPPVYSNSYFGEKPIVFHHQALSDSQRTEKGHKVSVVSGPADQKTGLPFITSSYSSLELPDRPLTENTGQVSVVPGPTDQKTAIPTVPSASHSYIERPTVSYQLEFPDRSEKALEVLGGAGPTEQKTEIPVVPSIPYYGERPSGSYQQELPDFPEEALQVLGVAGVVSSSPYSKDEMPLIASQQELPDLTKISLKAVGPGSTDQKTEAQIVSSSSREKPSGFYQQELPNTGEDALGGFVHPGPFVQKVEKATVPLTYHPSQELPASHLPEESLKVSTGSALAAQTPGTPTGLSSSYFHREKFSDVYPKASPDHVLTENSLKASTVPGVSDQNRRPAVSSGSHSHKEKHKISAADLLDDEKSELPTVTHRSYLHRKKPAVSSGIGPDDQKTPLPTAFHGSYLQKVKPLVFIQKQLPDRDHYEDIPKISTVYESTAVNTGVPVPLPVSYAHREKLDTSRGFPQELPDRYLTEDALKVSSYLGQAEQISGLPIVSPGTYSHSEKHQLVSEHVQDNLNSPESYSLIANSIPLNSQIDDGVICKPESSGFGDVGYEETQHIDHGSKTLKEIRTLLMEAENIALKRYNFPAPLVPFRDVNDVSFIKSKKVVCFKDPSVTDICTQREAFTEEVPHVECIQKDIGTQTNLNCRSGVENWEFISSTTIRSPLQEAYSTRVAFDETFRQYEASRSVMRSEPEGCSAGFGNKIFIPMMTFIKSDSSSDVSDGCCSWNSNLPESLESVSDVFLNFFPYASSKTSITDSREEDGFSESDDGCGSVDSLAAHVRYLLQCESSLNQAKQILKNAEEEECRVRAHAWNLKFNLGHDCGYSISELNEDDRRKVEEIKAKLFGHGRATHVSEGLCSPQGIGCVPEAVCGHIVIESHEKGCFRTLTAEQPRPDSRHCVFQSVEPSDSIRGRRSPSSWRGRELFEQSHSPHTDHQMRKYSSPSCPDIASCIFLEQRELFEQCKAPQVDHDNREDHSFFPKCQDYVVADLPSDFLDQQQCRSPDVDDDMRKEQFPLSQGQGWVVEKIQHMPQSHFSNMINVDAKVSNLISQSAPDHCTADSPPPSNRKALSCVRITLCPKTSSKLDSGTLDERFHSLDTASKTKINSKCNFDLRTIPSRSLEPTSKLLTCKPIAKDQESLGFLGPESPLDLEVTQSSLPDSKTISQDLKTKLPQNSQIVTSRQTQVNKSDLEGYSKPEGTPVSADGSPKQSKALFPSSSTKLSSDAITQITTESPEKTTFSSEIFINVEDHGQEVLGPMAQKPPELASVCSVQQITSSHGKDGQPVLLPYKPSGSSKMYYVPQLKTLPSCLDSRSDTTIESSHSGSNDAIAPDFPAEMLGTRDDDLSTTVNIKHTEGIYSKRAVTKVKKPPQKDNAGSGDTTVQDKETENLPDTESIKQKEEIHVKRTIPQEFCPEKEGSLEIDISESECHSAFENTTHSVFRSAKFYFHHPVHLPHEQDFCHESLGRSVFMKHSWKDFFHHHSEHSCLPPPGPIADKTKMDYTRIKSLSINLNLGENEKMHTLKNQAKDPKGKRQTNDQKKDQKVTPELTTQCTMSLNELWNKFQERQKQQKSPGNCDKKELSLVERLDRLAKLLQNPITHSLQASESTQDDSRGGRGVRGWRTGKRQHQQRGKLQRKQCKSLERGHNTGDFRKSRVLSHCGGKSNKIKIEQVKLDKYILRKQPDFDYASNTSSDSRLSEESELLTDSPNIFSSTNSLMDSDVLTQTDRDVTLNERSSSISTIDTARLIQAFGQERLYVSPRRIKLYSSVANQQRRYLEKRCKYSKSALGTGYPQMTSEHTRRRHIQEANHISSDSISSAGSFLTLDSTLYNGETVHMLNKGVQAGNLEIVTGTKKYTRDVGVTFPTPSSSEARLEEDSDVTSWSEEKNKEKRFFSNYLQNKNLRKIKPNSCEGVSWFVPVESRKSGSKKENLPKIYSPGIAWFEPVTKNKPWREPLREQNWQKQCMSRGRLGGPGGDGGRVPLRPFVRATLQEALQLHRPDFISRSGERVKRLKLLVQERKLQSIFQSEREALFNTVRPLPRRVVLTVQSNTPIGKKEMIQRTKRIYEQLPEVKKKREEEKRKSDYKSYRLRAQHYKSKVTNRLLGRKVPWD", "length": 4318, "header": "tr|A0A9J7KAY5-1|A0A9J7H8Q2_CRIGR Computationally mapped isoform of Alstrom syndrome protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Alms1 PE=4 SV=1 CANONICAL=A0A9J7H8Q2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KCF5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8Q2/entry#A0A9J7KCF5-1", "sequence": { "sequence": "MELEDLPWPGELEEEEEEEVENASAAATEEEVKAGTSQEILGAEEEEVEEEGPEVGLDLDLNCEFQPQESTDEEEDEMAKAWLQAHPAHTVGACPPLPPPRHVYAPVEHLSETERAESWNHLPQERDPSQTLETSQTETDVRIEGTKVTDFPSQEGGELAQAERPVTEPKLNFLCSPLIVIQNNFATPDLPLLTCLIQHQEFESDSLFQQSELEFAPLRGIPDKSEDTEWLARPSEVSEALFQATSETSSDLVNSCLSISQHPLTGSTFGSQRSFPSEQENNGENATPNAPDELKSLNDSDNYDNALLSFMSWQMEKDSQQPEGNLADKDQVSASAISDVSDESIDAGRNNSFGSACSQDQYWEQEALQQTEACLASKDQTSFPCENTPPPSEMPYSFLRCMLERGKGAPFTSVNHLKDVCLGAPAAVELRPKMDSFESFEGNEHLQKEFSYFFKQKERRDFLVSSQVHAKAPEIKYIGKVAVPNSHEQVSEAYILSRGLEFSKLEASGGPFSTVKSNLDETSEQLYFQEERTQKAASTFGEKNVDATENVAFEAVIASIESSKQESPIRGIQTDINKPLADDSQEREPPKSDLSPLNYNDENSFMDKLKHPKYQSTPGVFEPAASKPLLHKEDDGGSSLSRDPDLKSPPNAPQNILKGLQGKAESGIVTSYGDAEYSSLYKTADVHSERLAELQREVDHSNLGISQTFPTPLPSFVPQEPTSESNYPFPRLRMLRISPDTLPTALTAGDTSKGGKVAISQSKLKPDITNTLEDSDIAAHSSLSFEGLSHFAVTPEGHLSEEAPKASAHLGLANQNTGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVSAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLSTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVSPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVSPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQDGYRTDQEPAVLAFPGQADQKNGLSTMTPTSYSRREKPGIFYQQVPTGGYLPEEIPKAPAAPTLSNQQKLPTGVSTSYSQSDKPGVFYQHALTGGRLPENIMKTSAAPGTTDQKFDVPVSPPTSYTGPTVFYQQELPKSHLSEETVRGSALPGPAAQNIGITALPSASYSHGEKPHTFYHQAFPESYLNHPAWKVSVAPGSVDQKIGAAVVPSTYSHDVKPGSFPQEELPDRHFTGETQKVSPVLRPAGQKPEVSTVHSSSYSKGMKPGIFYQHPLSDSRPGKEPLDVLAVSGSAEKTHSPTVTFASQPHKETANAFYQQTLSDSHLTEEALPVYVIPGLRDQKTPLPSELPVSYSHRAKNLPEDVIVSTDSGPADKTADIPTVSSSSYQHKKKPTVPYHQELPDRPVPAGTQKASLVSRSVDQKSGTSHPYGEMPSVFYQQELPDSHSTEKSTKTLIPGPADQKTDLPTVPPTSPSHAEKPIFPYQLTLPGSHLPEDAFKASPVSKSSDELSGISTKTSASYSNKERPSISHQQKFPDSRLTEDAQVSGTTRSEDQKTGTTVSVSPTSYSQKVRPGISYQQVLPSHLSEEALQTSATTRPADQSIAMPIVTSTSSSQREKPQIFYQQALPGSHLPGEPLKVSAAPRPPDQNTGAPAVSSSSYLPGEESIIFYQPGLSGNSLSAETFKSPGISGLTDQKTSIPAGPSASGSHPVREKSIIFYQNDLPTSPLTAETLRVAAVPVPTEQKTGTPAGPSGSHPVDGKFIIFLPDGHLPKEASDVLTSPGAVDLKTGEPPVYSNSYFGEKPIVFHHQALSDSQRTEKGHKVSVVSGPADQKTGLPFITSSYSSLELPDRPLTENTGQVSVVPGPTDQKTAIPTVPSASHSYIERPTVSYQLEFPDRSEKALEVLGGAGPTEQKTEIPVVPSIPYYGERPSGSYQQELPDFPEEALQVLGVAGVVSSSPYSKDEMPLIASQQELPDLTKISLKAVGPGSTDQKTEAQIVSSSSREKPSGFYQQELPNTGEDALGGFVHPGPFVQKVEKATVPLTYHPSQELPASHLPEESLKVSTGSALAAQTPGTPTGLSSSYFHREKFSDVYPKASPDHVLTENSLKASTVPGVSDQNRRPAVSSGSHSHKEKHKISAADLLDDEKSELPTVTHRSYLHRKKPAVSSGIGPDDQKTPLPTAFHGSYLQKVKPLVFIQKQLPDRDHYEDIPKISTVYESTAVNTGVPVPLPVSYAHREKLDTSRGFPQELPDRYLTEDALKVSSYLGQAEQISGLPIVSPGTYSHSEKHQLVSEHVQDNLNSPESYSLIANSIPLNSQIDDGVICKPESSGFGDVGYEETQHIDHGSKTLKEIRTLLMEAENIALKRYNFPAPLVPFRDVNDVSFIKSKKVVCFKDPSVTDICTQREAFTEEVPHVECIQKDIGTQTNLNCRSGVENWEFISSTTIRSPLQEAYSTRVAFDETFRQYEASRSVMRSEPEGCSAGFGNKIFIPMMTFIKSDSSSDVSDGCCSWNSNLPESLESVSDVFLNFFPYASSKTSITDSREEDGFSESDDGCGSVDSLAAHVRYLLQCESSLNQAKQILKNAEEEECRVRAHAWNLKFNLGHDCGYSISELNEDDRRKVEEIKAKLFGHGRATHVSEGLCSPQGIGCVPEAVCGHIVIESHEKGCFRTLTAEQPRPDSRHCVFQSVEPSDSIRGRRSPSSWRGRHINLSRSIDQSNTHLKVWNSFQLHSHPPFEKLAPDDIKISKGVGMPFHTNMDSHPLGLVEPTFVPAKEMDFPSPESMKQFTTSITFSSHGHSKYISDTSVFKIGVTTESSQDTGPSLGVFKSRIPEEQISPRDLKQKIFSPSSLKRQSHSPVTILAEDSRQRHKLPADCEHSHQKQKPLERSGFKASHSVPSVTSNCSNFKGVHFSGKDTIISPDKLSSTLEVKEKNVTVTPDLPSCIFIEGRELFEQSHSPHTDHQMRKYSSPSCPDIASCIFLEQRELFEQCKAPQVDHDNREDHSFFPKCQDYVVADLPSDFLDQQQCRSPDVDDDMRKEQFPLSQGQGWVVEKIQHMPQSHFSNMINVDAKVSNLISQSAPDHCTADSPPPSNRKALSCVRITLCPKTSSKLDSGTLDERFHSLDTASKTKINSKCNFDLRTIPSRSLEPTSKLLTCKPIAKDQESLGFLGPESPLDLEVTQSSLPDSKTISQDLKTKLPQNSQIVTSRQTQVNKSDLEGYSKPEGTPVSADGSPKQSKALFPSSSTKLSSDAITQITTESPEKTTFSSEIFINVEDHGQEVLGPMAQKPPELASVCSVQQITSSHGKDGQPVLLPYKPSGSSKMYYVPQLKTLPSCLDSRSDTTIESSHSGSNDAIAPDFPAEMLGTRDDDLSTTVNIKHTEGIYSKRAVTKVKKPPQKDNAGSGDTTVQDKETENLPDTESIKQKEEIHVKRTIPQEFCPEKEGSLEIDISESECHSAFENTTHSVFRSAKFYFHHPVHLPHEQDFCHESLGRSVFMKHSWKDFFHHHSEHSCLPPPGPIADKTKMDYTRIKSLSINLNLGENEKMHTLKNQAKDPKGKRQTNDQKKDQKVTPELTTQCTMSLNELWNKFQERQKQQKSPGNCDKKELSLVERLDRLAKLLQNPITHSLQASESTQDDSRGGRGVRGWRTGKRQHQQRGKLQRKQCKSLERGHNTGDFRKSRVLSHCGGKSNKIKIEQVKLDKYILRKQPDFDYASNTSSDSRLSEESELLTDSPNIFSSTNSLMDSDVLTQTDRDVTLNERSSSISTIDTARLIQAFGQERLYVSPRRIKLYSSVANQQRRYLEKRCKYSKSALGTGYPQMTSEHTRRRHIQEANHISSDSISSAGSFLTLDSTLYNGETVHMLNKGVQAGNLEIVTGTKKYTRDVGVTFPTPSSSEARLEEDSDVTSWSEEKNKEKRFFSNYLQNKNLRKIKPNSCEGSLDLRRKTCLRFTALVSPGLNQ", "length": 4384, "header": "tr|A0A9J7KCF5-1|A0A9J7H8Q2_CRIGR Computationally mapped isoform of Alstrom syndrome protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Alms1 PE=4 SV=1 CANONICAL=A0A9J7H8Q2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KCJ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8Q2/entry#A0A9J7KCJ5-1", "sequence": { "sequence": "MELEDLPWPGELEEEEEEEVENASAAATEEEVKAGTSQEILGAEEEEVEEEGPEVGLDLDLNCEFQPQESTDEEEDEMAKAWLQAHPAHTVGACPPLPPPRHVYAPVEHLSETERAESWNHLPQERDPSQTLETSQTETDVRIEGTKVTDFPSQEGGELAQAERPVTEPKLNFLCSPLIVIQNNFATPDLPLLTCLIQHQEFESDSLFQQSELEFAPLRGIPDKSEDTEWLARPSEVSEALFQATSETSSDLVNSCLSISQHPLTGSTFGSQRSFPSEQENNGENATPNAPDELKSLNDSDNYDNALLSFMSWQMEKDSQQPEGNLADKDQVSASAISDVSDESIDAGRNNSFGSACSQDQYWEQEALQQTEACLASKDQTSFPCENTPPPSEMPYSFLRCMLERGKGAPFTSVNHLKDVCLGAPAAVELRPKMDSFESFEGNEHLQKEFSYFFKQKERRDFLVSSQVHAKAPEIKYIGKVAVPNSHEQVSEAYILSRGLEFSKLEASGGPFSTVKSNLDETSEQLYFQEERTQKAASTFGEKNVDATENVAFEAVIASIESSKQESPIRGIQTDINKPLADDSQEREPPKSDLSPLNYNDENSFMDKLKHPKYQSTPGVFEPAASKPLLHKEDDGGSSLSRDPDLKSPPNAPQNILKGLQGKAESGIVTSYGDAEYSSLYKTADVHSERLAELQREVDHSNLGISQTFPTPLPSFVPQEPTSESNYPFPRLRMLRISPDTLPTALTAGDTSKGGKVAISQSKLKPDITNTLEDSDIAAHSSLSFEGLSHFAVTPEGHLSEEAPKASAHLGLANQNTGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVSAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLSTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVSPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVSPTSYSQREKPNILHQGGYRTDQEPAVLAFPGQADQKNGLPTMTPTSYSPREKPGIFYQQVPTGGYLPEEIPKAPATGTSPVIPTSYSQREKPNILHQDGYRTDQEPAVLAFPGQADQKNGLSTMTPTSYSRREKPGIFYQQVPTGGYLPEEIPKAPAAPTLSNQQKLPTGVSTSYSQSDKPGVFYQHALTGGRLPENIMKTSAAPGTTDQKFDVPVSPPTSYTGPTVFYQQELPKSHLSEETVRGSALPGPAAQNIGITALPSASYSHGEKPHTFYHQAFPESYLNHPAWKVSVAPGSVDQKIGAAVVPSTYSHDVKPGSFPQEELPDRHFTGETQKVSPVLRPAGQKPEVSTVHSSSYSKGMKPGIFYQHPLSDSRPGKEPLDVLAVSGSAEKTHSPTVTFASQPHKETANAFYQQTLSDSHLTEEALPVYVIPGLRDQKTPLPSELPVSYSHRAKNLPEDVIVSTDSGPADKTADIPTVSSSSYQHKKKPTVPYHQELPDRPVPAGTQKASLVSRSVDQKSGTSHPYGEMPSVFYQQELPDSHSTEKSTKTLIPGPADQKTDLPTVPPTSPSHAEKPIFPYQLTLPGSHLPEDAFKASPVSKSSDELSGISTKTSASYSNKERPSISHQQKFPDSRLTEDAQVSGTTRSEDQKTGTTVSVSPTSYSQKVRPGISYQQVLPSHLSEEALQTSATTRPADQSIAMPIVTSTSSSQREKPQIFYQQALPGSHLPGEPLKVSAAPRPPDQNTGAPAVSSSSYLPGEESIIFYQPGLSGNSLSAETFKSPGISGLTDQKTSIPAGPSASGSHPVREKSIIFYQNDLPTSPLTAETLRVAAVPVPTEQKTGTPAGPSGSHPVDGKFIIFLPDGHLPKEASDVLTSPGAVDLKTGEPPVYSNSYFGEKPIVFHHQALSDSQRTEKGHKVSVVSGPADQKTGLPFITSSYSSLELPDRPLTENTGQVSVVPGPTDQKTAIPTVPSASHSYIERPTVSYQLEFPDRSEKALEVLGGAGPTEQKTEIPVVPSIPYYGERPSGSYQQELPDFPEEALQVLGVAGVVSSSPYSKDEMPLIASQQELPDLTKISLKAVGPGSTDQKTEAQIVSSSSREKPSGFYQQELPNTGEDALGGFVHPGPFVQKVEKATVPLTYHPSQELPASHLPEESLKVSTGSALAAQTPGTPTGLSSSYFHREKFSDVYPKASPDHVLTENSLKASTVPGVSDQNRRPAVSSGSHSHKEKHKISAADLLDDEKSELPTVTHRSYLHRKKPAVSSGIGPDDQKTPLPTAFHGSYLQKVKPLVFIQKQLPDRDHYEDIPKISTVYESTAVNTGVPVPLPVSYAHREKLDTSRGFPQELPDRYLTEDALKVSSYLGQAEQISGLPIVSPGTYSHSEKHQLVSEHVQDNLNSPESYSLIANSIPLNSQIDDGVICKPESSGFGDVGYEETQHIDHGSKTLKEIRTLLMEAENIALKRYNFPAPLVPFRDVNDVSFIKSKKVVCFKDPSVTDICTQREAFTEEVPHVECIQKDIGTQTNLNCRSGVENWEFISSTTIRSPLQEAYSTRVAFDETFRQYEASRSVMRSEPEGCSAGFGNKIFIPMMTFIKSDSSSDVSDGCCSWNSNLPESLESVSDVFLNFFPYASSKTSITDSREEDGFSESDDGCGSVDSLAAHVRYLLQCESSLNQAKQILKNAEEEECRVRAHAWNLKFNLGHDCGYSISELNEDDRRKVEEIKAKLFGHGRATHVSEGLCSPQGIGCVPEAVCGHIVIESHEKGCFRTLTAEQPRPDSRHCVFQSVEPSDSIRGRRSPSSWRGRHINLSRSIDQSNTHLKVWNSFQLHSHPPFEKLAPDDIKISKGVGMPFHTNMDSHPLGLVEPTFVPAKEMDFPSPESMKQFTTSITFSSHGHSKYISDTSVFKIGVTTESSQDTGPSLGVFKSRIPEEQISPRDLKQKIFSPSSLKRQSHSPVTILAEDSRQRHKLPADCEHSHQKQKPLERSGFKASHSVPSVTSNCSNFKGVHFSGKDTIISPDKLSSTLEVKEKNVTVTPDLPSCIFIEGRELFEQSHSPHTDHQMRKYSSPSCPDIASCIFLEQRELFEQCKAPQVDHDNREDHSFFPKCQDYVVADLPSDFLDQQQCRSPDVDDDMRKEQFPLSQGQGWVVEKIQHMPQSHFSNMINVDAKVSNLISQSAPDHCTADSPPPSNRKALSCVRITLCPKTSSKLDSGTLDERFHSLDTASKTKINSKCNFDLRTIPSRSLEPTSKLLTCKPIAKDQESLGFLGPESPLDLEVTQSSLPDSKTISQDLKTKLPQNSQIVTSRQTQVNKSDLEGYSKPEGTPVSADGSPKQSKALFPSSSTKLSSDAITQITTESPEKTTFSSEIFINVEDHGQEVLGPMAQKPPELASVCSVQQITSSHGKDGQPVLLPYKPSGSSKMYYVPQLKTLPSCLDSRSDTTIESSHSGSNDAIAPDFPAEMLGTRDDDLSTTVNIKHTEGIYSKRAVTKVKKPPQKDNAGRPLVPVRCCFKKT", "length": 3837, "header": "tr|A0A9J7KCJ5-1|A0A9J7H8Q2_CRIGR Computationally mapped isoform of Alstrom syndrome protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Alms1 PE=4 SV=1 CANONICAL=A0A9J7H8Q2-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1886, "start_aa": "Thr", "end_pos": 1886, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1886", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", 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Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035303364", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303364" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H6D4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6D4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Rnf212", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6D4", "locus": {} } ], "crossref": [ { "id": "A0A9J7H6D4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H6D4", "database": "AlphaFoldDB", "categories": [] }, { "id": "103159853", "url": "https://www.ncbi.nlm.nih.gov/gene/103159853", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR042123", 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"UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H3A3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H3A3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H6D4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6D4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H6D4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6D4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K7U7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7U7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K7U7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7U7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGSPVNWEDFFRVPGSAPLLRKTEVAAATLAVLWEESRQTRQSHHGKKDECLICQVPCNTVLLSKNTNSNIQTFFLGIDGLCKKYSQETSQISEFQDKHRRRLVAFYREKISQLEESLRKSVLQIKRLQSMRSSQQAAFNTIKTSVTTKPNGYPLLPPNSSLPDRLESMEIDLTPPARKPEMAAGPSRISLISPPQDGRMGSVSCRGTQQLSLTPSHASMTSAIRVPPLQMPYKELSPAPVSQLSSRAAGGPSPSVSSSWTGLPRPPISISGLLQRQCAGSTSPRGMDTEKMSPFLPSTPANPRSTASPWHVCVPR", "length": 316, "header": "tr|A0A9J7H6D4-1|A0A9J7H6D4_CRIGR Isoform 1 of Probable E3 SUMO-protein ligase RNF212 isoform X1 OS=Cricetulus griseus OX=10029 GN=Rnf212 PE=4 SV=1 CANONICAL=A0A9J7H6D4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H3A3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6D4/entry#A0A9J7H3A3-1", "sequence": { "sequence": "MGSPVNWEDFFRVPGSAPLLRKTEVAAATLAVLWEESRQTRQSHHGKKDECLICQVPCNTVLLSKNTNSNIQTFFLGIDGLCKKYSQETSQISEFQDKHRRRLVAFYREKISQLEESLRKSVLQIKRLQSMRSSQQAAFNTIKTSVTTKPNGYPLLPPNSSLPDRLESMEIDLTPPARKPEMAAGPSRISLISPPQDGRMGSVSCRGTQQLSLTPSHASMTSAISSSLCLCMRSVAGGVEASSLTVPHKVLHRSSGVVYGYGIPTLRTYLSLSHTFLCGQSSTIADALQGTIASSRVTAIQQSSRRAFSQC", "length": 311, "header": "tr|A0A9J7H3A3-1|A0A9J7H6D4_CRIGR Computationally mapped isoform of Probable E3 SUMO-protein ligase RNF212 isoform X1 OS=Cricetulus griseus OX=10029 GN=Rnf212 PE=4 SV=1 CANONICAL=A0A9J7H6D4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H6D4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6D4/entry#A0A9J7H6D4-1", "sequence": { "sequence": "MGSPVNWEDFFRVPGSAPLLRKTEVAAATLAVLWEESRQTRQSHHGKKDECLICQVPCNTVLLSKNTNSNIQTFFLGIDGLCKKYSQETSQISEFQDKHRRRLVAFYREKISQLEESLRKSVLQIKRLQSMRSSQQAAFNTIKTSVTTKPNGYPLLPPNSSLPDRLESMEIDLTPPARKPEMAAGPSRISLISPPQDGRMGSVSCRGTQQLSLTPSHASMTSAIRVPPLQMPYKELSPAPVSQLSSRAAGGPSPSVSSSWTGLPRPPISISGLLQRQCAGSTSPRGMDTEKMSPFLPSTPANPRSTASPWHVCVPR", "length": 316, "header": "tr|A0A9J7H6D4-1|A0A9J7H6D4_CRIGR Isoform 1 of Probable E3 SUMO-protein ligase RNF212 isoform X1 OS=Cricetulus griseus OX=10029 GN=Rnf212 PE=4 SV=1 CANONICAL=A0A9J7H6D4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K7U7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6D4/entry#A0A9J7K7U7-1", "sequence": { "sequence": "MKGKKDECLICQVPCNTVLLSKNTNSNIQTFFLGIDGLCKKYSQETSQISEFQDKHRRRLVAFYREKISQLEESLRKSVLQIKRLQSMRSSQQAAFNTIKTSVTTKPNGYPLLPPNSSLPDRLESMEIDLTPPARKPEMAAGPSRISLISPPQDGRMGSVSCRGTQQLSLTPSHASMTSAIRVPPLQMPYKELSPAPVSQLSSRAAGGPSPSVSSSWTGLPRPPISISGLLQRQCAGSTSPRGMDTEKMSPFLPSTPANPRSTASPWHVCVPR", "length": 273, "header": "tr|A0A9J7K7U7-1|A0A9J7H6D4_CRIGR Computationally mapped isoform of Probable E3 SUMO-protein ligase RNF212 isoform X1 OS=Cricetulus griseus OX=10029 GN=Rnf212 PE=4 SV=1 CANONICAL=A0A9J7H6D4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K7U7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7U7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K7U7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7U7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:103159853", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103159853", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "protein sumoylation", "id": "GO:0016925", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016925", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H6D4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6D4" } ], "pmid": "" }, { "name": "homologous chromosome pairing at meiosis", "id": "GO:0007129", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007129", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H6D4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6D4" } ], "pmid": "" }, { "name": "reciprocal meiotic recombination", "id": "GO:0007131", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007131", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H6D4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6D4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "SUMO transferase activity", "id": "GO:0019789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019789", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H6D4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6D4" } ], "pmid": "" }, { "name": "ligase activity", "id": "GO:0016874", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016874", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H6D4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6D4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "synaptonemal complex", "id": "GO:0000795", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000795", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H6D4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6D4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 159, "end_pos": 161, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 159, "end_pos": 161 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": 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"uniprot_canonical_ac": "A0A9J7H5T6-1", "uniprot_ac": "A0A9J7H5T6", "uniprot_id": "A0A9J7H5T6_CRIGR", "mass": { "chemical_mass": 64031.0, "monoisotopic_mass": 64031.0 }, "refseq": { "ac": "XP_035303672", "name": "keratin-associated protein 10-4-like isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303672" }, "gene_names": [ { "name": "LOC113836887", "type": "recommended", "evidence": [ { "id": "A0A9J7H5T6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5T6" } ] }, { "name": "LOC113836887", "type": "synonym", "evidence": [ { "id": "XP_035303672", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303672" } ] } ], "protein_names": [ { "name": "Keratin-associated protein 10-4-like isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7H5T6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5T6/entry#names_and_taxonomy" } ] }, { "name": "keratin-associated protein 10-4-like isoform X1", "type": "synonym", "evidence": [ { "id": "XP_035303672", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303672" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035303672", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303672" } ] }, { "annotation": "In the hair cortex, hair keratin intermediate filaments are embedded in an interfilamentous matrix, consisting of hair keratin-associated proteins (KRTAP), which are essential for the formation of a rigid and resistant hair shaft through their extensive disulfide bond cross-linking with abundant cysteine residues of hair keratins. The matrix proteins include the high-sulfur and high-glycine-tyrosine keratins.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H5T6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5T6#function" }, { "database": "UniProtKB", "id": "ARBA00003327", "url": "https://www.uniprot.org/uniprotkb/ARBA00003327#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H5T6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5T6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113836887", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5T6", "locus": {} } ], "crossref": [ { "id": "A0A9J7H5T6", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H5T6", "database": "AlphaFoldDB", "categories": [] }, { "id": "113836887", "url": "https://www.ncbi.nlm.nih.gov/gene/113836887", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002494", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002494", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113836887", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113836887", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR23262", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23262", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23262:SF182", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23262:SF182", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13885", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13885", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035303672", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303672", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H509", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H509", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H509-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H509-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H5T6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5T6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H5T6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5T6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. 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Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 39% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035305057", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305057" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H579", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H579" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC103163500", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H579", "locus": {} } ], "crossref": [ { "id": "A0A9J7H579", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H579", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd16843", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16843", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "103163500", "url": "https://www.ncbi.nlm.nih.gov/gene/103163500", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050412", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050412", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:103163500", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103163500", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H579", "url": "https://www.orthodb.org/?gene=A0A9J7H579", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11738", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11738", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11738:SF187", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11738:SF187", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13895", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13895", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035305057", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305057", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H579", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H579", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H579-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H579-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFWSSPLEGDAMTIASIALLCLEIIGKPTLRAHPSSVMTRGMQLTISCEGTSRAQEYYLYKEGSPDPWQRQSPMEPGHKTEFFFPSVLENHAGRYRCYYMTRVGWSERSDFLDLIVTGFYSKPNLSALPSPVVRLGGNVTLQCASQIGYDGFSLTKEEPQKFSWTLDSQYIYSDSNFRALFSEGPVNSRQRRTFRCYGYYLNTPQVWSEPSDPLELRVSGVLETTTQPQNLSETTAGLPQQGKDSECNLEVKRRDGHKPCIVTMFEKEI", "length": 269, "header": "tr|A0A9J7H579-1|A0A9J7H579_CRIGR Isoform 1 of Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC103163500 PE=4 SV=1 CANONICAL=A0A9J7H579-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H579-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H579/entry#A0A9J7H579-1", "sequence": { "sequence": "MFWSSPLEGDAMTIASIALLCLEIIGKPTLRAHPSSVMTRGMQLTISCEGTSRAQEYYLYKEGSPDPWQRQSPMEPGHKTEFFFPSVLENHAGRYRCYYMTRVGWSERSDFLDLIVTGFYSKPNLSALPSPVVRLGGNVTLQCASQIGYDGFSLTKEEPQKFSWTLDSQYIYSDSNFRALFSEGPVNSRQRRTFRCYGYYLNTPQVWSEPSDPLELRVSGVLETTTQPQNLSETTAGLPQQGKDSECNLEVKRRDGHKPCIVTMFEKEI", "length": 269, "header": "tr|A0A9J7H579-1|A0A9J7H579_CRIGR Isoform 1 of Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC103163500 PE=4 SV=1 CANONICAL=A0A9J7H579-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H579", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H579" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H579", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H579" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:103163500", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103163500", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H579", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H579" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "cytokine-mediated signaling pathway", "id": "GO:0019221", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019221", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H579", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H579" } ], "pmid": "" }, { "name": "immune response-regulating signaling pathway", "id": "GO:0002764", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002764", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H579", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H579" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "inhibitory MHC class I receptor activity", "id": "GO:0032396", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032396", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H579", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H579" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 124, "end_pos": 126, "annotation": "n_glycosylation_sequon" }, { "start_pos": 138, "end_pos": 140, "annotation": "n_glycosylation_sequon" }, { "start_pos": 230, "end_pos": 232, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7H579", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H579" }, { "id": "PS50835", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50835" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ig-like", "eco_id": "ECO_0000259", "start_pos": 28, "end_pos": 97, "start_aa": "Pro", "end_aa": "Cys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 124, "end_pos": 126 }, { "start_pos": 138, "end_pos": 140 }, { "start_pos": 230, "end_pos": 232 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7H587-1", "uniprot_ac": "A0A9J7H587", "uniprot_id": "A0A9J7H587_CRIGR", "mass": { "chemical_mass": 85771.0, "monoisotopic_mass": 85771.0 }, "refseq": { "ac": "XP_035305034", "name": "LOW QUALITY PROTEIN: zinc finger protein 420-like isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305034" }, "gene_names": [ { "name": "LOC100756005", "type": "recommended", "evidence": [ { "id": "A0A9J7H587", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H587" } ] }, { "name": "LOC100756005", "type": "synonym", "evidence": [ { "id": "XP_035305034", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305034" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: zinc finger protein 420-like isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035305034", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305034" }, { "id": "A0A9J7H587", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H587/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035305034", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305034" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H587", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H587" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100756005", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H587", "locus": {} } ], "crossref": [ { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100756005", "url": "https://www.ncbi.nlm.nih.gov/gene/100756005", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050636", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050636", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100756005", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756005", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H587", "url": "https://www.orthodb.org/?gene=A0A9J7H587", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47772", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47772", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47772:SF15", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47772:SF15", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035305034", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305034", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H587", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H587", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H587-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H587-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAASLVNVPQDPLTFRDVTVDLSQEEWECLDCAQRALYMDVLLENYSNLVFVENNHRICGNYEKFLDQGSEHIARHHHVTIPEISCKCNELGKMTHESFRSTPYDTGDTPENYNKFMCGSHKNAASESSVIERHKSGDSGEEPCKFKDCGNGLNLFPISQNQRFPSSLSIHQKNHSAEKPHKCKACGKCFYHLYQVKYHFKTHTGERAYKCSECHKRFSQLTHLRSHQTIHTGEKHYKCDECDKSFSRLTYLRTHQRIHTGEKPYRCNECEKCFIQKAQLTIHQRIHTGEKPYKCSECGKSFTCCSGLRKHQRIHTGEKPYKCGECKKSFASGSDLRRHQKIHTGEKPYKCSQCDKCFIQKVQLRIHERIHSGEEPYKCRECVKAFTHLSGLRKHQKRIHTGEKPYKCSECDKSFSKKDHLRTHETIHTGDRPFKCSECDKSFTEKSHLTVHQRIHTGEKPYKCSECDKSFSRKYHLRTHERIHTGEKPYKCTECDKSFCRTDELRIHQRIHTGEKSHKCSECDKYLTTKHSLRIHQRTHTGEKPYKCSECDQSFSRKDHLRTHERIHTGEKPYKCTECCKSFSRKYHLRTHERIHTGEKPYKCTECDKSFCRTDELRIHQRIHTREKCHKCSECNKYLTTKHNLRLHLRIHTGEKPYKCSECDKSFSQKCLLIAHQRXYTGEKPYKCCECNKSFTRKGHLRTHQTIHMLDDIYKCYKLVKSFTVVSKS", "length": 729, "header": "tr|A0A9J7H587-1|A0A9J7H587_CRIGR Isoform 1 of LOW QUALITY PROTEIN: zinc finger protein 420-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100756005 PE=3 SV=1 CANONICAL=A0A9J7H587-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H587-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H587/entry#A0A9J7H587-1", "sequence": { "sequence": "MAASLVNVPQDPLTFRDVTVDLSQEEWECLDCAQRALYMDVLLENYSNLVFVENNHRICGNYEKFLDQGSEHIARHHHVTIPEISCKCNELGKMTHESFRSTPYDTGDTPENYNKFMCGSHKNAASESSVIERHKSGDSGEEPCKFKDCGNGLNLFPISQNQRFPSSLSIHQKNHSAEKPHKCKACGKCFYHLYQVKYHFKTHTGERAYKCSECHKRFSQLTHLRSHQTIHTGEKHYKCDECDKSFSRLTYLRTHQRIHTGEKPYRCNECEKCFIQKAQLTIHQRIHTGEKPYKCSECGKSFTCCSGLRKHQRIHTGEKPYKCGECKKSFASGSDLRRHQKIHTGEKPYKCSQCDKCFIQKVQLRIHERIHSGEEPYKCRECVKAFTHLSGLRKHQKRIHTGEKPYKCSECDKSFSKKDHLRTHETIHTGDRPFKCSECDKSFTEKSHLTVHQRIHTGEKPYKCSECDKSFSRKYHLRTHERIHTGEKPYKCTECDKSFCRTDELRIHQRIHTGEKSHKCSECDKYLTTKHSLRIHQRTHTGEKPYKCSECDQSFSRKDHLRTHERIHTGEKPYKCTECCKSFSRKYHLRTHERIHTGEKPYKCTECDKSFCRTDELRIHQRIHTREKCHKCSECNKYLTTKHNLRLHLRIHTGEKPYKCSECDKSFSQKCLLIAHQRXYTGEKPYKCCECNKSFTRKGHLRTHQTIHMLDDIYKCYKLVKSFTVVSKS", "length": 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"url": "https://www.ebi.ac.uk/interpro/entry/IPR031368", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113832590", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113832590", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H5C2", "url": "https://www.orthodb.org/?gene=A0A9J7H5C2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR34834", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34834", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34834:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34834:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15670", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15670", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035303395", "url": 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"MGEHIYHGAQTCSGTNLRRCQDLGDSILLILGSFILLNVGINVVTLLWKHLKNSLRILFHHFFPKDPKNLCSRMPPRFHRHPNFLLGDVNHLDSRIPDTNDENVSRCCWMPPQCRHGRAPTEASWELWKEGLMGAGEVPQTTFIKTQALFFRPEISPRTPKIIKLNRVPPPTPQESKTKAPDDNPPRAPSQALTYSSTNTHELPSTQSQTQTSEPTQSRAQGLEHTSAHTPPAHAPDFISAPTPALSEASTPGNAPSSTPSHNPAPTPPYSSVQDPTHSQAHTLDQAQPHILAPVTLQVPVPPQTQSLAHTPEQTSVHTSPQPPIQAPASAYFRCQGHDPAQALVHTLTHPQADVPEQTASQASAHAPPNSLLHSHAHSPVPGPTSGPAPALALSMTMTTTQASAQVPVTNSTPTISPLPSMLATFDPSFSTGHTLYDARRVKQNVFLKHNSQNLRCFRKDLNIPSRPQEVKGLVNSGTSEQTPKQHGGDSAVPPAGSILGYLKVGNTGWKISDNAEDKFSQPKTFPHCSFHPCCSESINKDPQAPVYPKFLVYTQDTTPSKPCFHSPSTAQSVLPTVPPPCTLAVPLVSPRTFVVPQSNHQMPSNLTQTSTFLSTSKSPQTVSSAYYASPSQFTTTSQTLTQPPNPENQNLNQGFDLQKTPSLAKDSRVPRKPGLTQDPGHQKNPSLTQDPGLQNPSLTQDPGLQKNPRLIPNPGCQKNPGLIPNPGLQKNPGLILNPCLHKNSGFYKFPACTQDPFLCMNPNVSQDPCPQKNLDITQDSSLRSSAATQDAGVLRNLGFIQPSRLHKNIIFNQTSGQRTLSFMQDSVVFRTASLNQDTVINKNKDLSPVTDQKRPDPSQDCEGNSGSRNAQPLGVCRNVDPTQDSRPQKSPCHTQDSEINKNSGLTQKSSSKSPGLIQASCFHKSSGLTQDSGDYQNLGFTQDSGIYRVPDLNQDTDSHKSPCPINVTIAEKRSELNQDVGIYSSEHSQDPNLQECPAIDQDSGRHQNPVPGQGSGFKMQGFTQQADPLRDSGLTQQAGLNKKTSFAPGTASAQVLGSLQALKMTSSPVKSFVCKMDNTEPVNQSSCPSKAQMLPHDLKSFSEVPVLIELQPSSQRLDNQEWACHSVNTVASSCQKYRQTSIPHKINWRPHCPGPSNRTGHVVFDSRHKQSVTGREKCEALFPRRPRQEVLKNSEEIQKEWGYQNVMKTLEKEGANVHQE", "length": 1221, "header": "tr|A0A9J7H5C2-1|A0A9J7H5C2_CRIGR Isoform 1 of Uncharacterized protein SPEM3 OS=Cricetulus griseus OX=10029 GN=Spem3 PE=4 SV=1 CANONICAL=A0A9J7H5C2-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 172, "start_aa": "Thr", "end_pos": 172, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr172", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 243, "start_aa": "Thr", "end_pos": 243, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr243", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 251, "start_aa": "Thr", "end_pos": 251, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr251", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 259, "start_aa": "Thr", "end_pos": 259, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr259", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 267, "start_aa": "Thr", "end_pos": 267, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr267", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 385, "start_aa": "Thr", "end_pos": 385, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr385", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H5C2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5C2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H5C2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5C2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:113832590", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113832590", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H5C2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5C2" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H5C2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5C2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "flagellated sperm motility", "id": "GO:0030317", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030317", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H5C2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5C2" } ], "pmid": "" }, { "name": "sperm individualization", "id": "GO:0007291", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007291", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H5C2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5C2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 103, "end_pos": 105, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1084, "end_pos": 1086, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1158, "end_pos": 1160, "annotation": "n_glycosylation_sequon" }, { "start_pos": 411, "end_pos": 413, "annotation": "n_glycosylation_sequon" }, { 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"enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 172, 243, 251, 259, 267, 385 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 103, "end_pos": 105 }, { "start_pos": 1084, "end_pos": 1086 }, { "start_pos": 1158, "end_pos": 1160 }, { "start_pos": 411, "end_pos": 413 }, { "start_pos": 606, "end_pos": 608 }, { "start_pos": 764, "end_pos": 766 }, { "start_pos": 813, "end_pos": 815 }, { "start_pos": 967, "end_pos": 969 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 6 }, { "field": "total_sites", "count": 6 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 6 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": 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"glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7H5C7-1", "uniprot_ac": "A0A9J7H5C7", "uniprot_id": "A0A9J7H5C7_CRIGR", "mass": { "chemical_mass": 11852.0, "monoisotopic_mass": 11852.0 }, "refseq": { "ac": "XP_035304568", "name": "eukaryotic translation initiation factor 1-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304568" }, "gene_names": [ { "name": "LOC118239255", "type": "recommended", "evidence": [ { "id": "A0A9J7H5C7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5C7" } ] }, { "name": "LOC118239255", "type": "synonym", "evidence": [ { "id": "XP_035304568", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304568" } ] } ], "protein_names": [ { "name": "Eukaryotic translation initiation factor 1-like", "type": "synonym", 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This record is derived from a genomic sequence (NC_048601.1) annotated using gene prediction method: Gnomon. 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984, "header": "tr|A0A9J7H5D2-1|A0A9J7H5D2_CRIGR Isoform 1 of LOW QUALITY PROTEIN: methyl-CpG-binding domain protein 6-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100769530 PE=4 SV=1 CANONICAL=A0A9J7H5D2-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 618, "start_aa": "Thr", "end_pos": 618, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr618", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 674, "start_aa": "Thr", "end_pos": 674, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr674", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 800, "start_aa": "Thr", "end_pos": 800, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr800", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. 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}, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7H5E7-1", "uniprot_ac": "A0A9J7H5E7", "uniprot_id": "A0A9J7H5E7_CRIGR", "mass": { "chemical_mass": 49954.0, "monoisotopic_mass": 49954.0 }, "refseq": { "ac": "XP_035304603", "name": "inositol 1,4,5-triphosphate receptor associated 2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304603" }, "gene_names": [ { "name": "Irag2", "type": "recommended", "evidence": [ { "id": "A0A9J7H5E7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5E7" } ] }, { "name": "Irag2", "type": "synonym", "evidence": [ { "id": "XP_035304603", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304603" } ] } ], "protein_names": [ { "name": "Inositol 1,4,5-triphosphate receptor associated 2", "type": "synonym", "evidence": [ { "id": "A0A9J7H5E7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5E7/entry#names_and_taxonomy" } ] }, { "name": "inositol 1,4,5-triphosphate receptor associated 2", "type": "synonym", "evidence": [ { "id": "XP_035304603", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304603" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048601.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035304603", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304603" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H5E7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5E7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Irag2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5E7", "locus": {} } ], "crossref": [ { "id": "A0A9J7H5E7", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H5E7", "database": "AlphaFoldDB", "categories": [] }, { "id": "100765506", "url": "https://www.ncbi.nlm.nih.gov/gene/100765506", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100765506", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765506", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H5E7", "url": "https://www.orthodb.org/?gene=A0A9J7H5E7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15352", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15352", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15352:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15352:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05781", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05781", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035304603", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304603", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H5E7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5E7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H5E7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5E7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTSGDLDCKSLCKKEEEARSASAMPGTSPAPETAVLGDSGDAGDAQGVDKAASHLEAREELRIVEDGGKGCIAGETEVSEPPKSPVKLVNFQQSENTSASEKEVEAEFLRLSLGLKCDWFTLEKRVRLEERSRDLAEENLKKEITNCLKLLESLAPLCEDDNQAQEIIKKLEKSITFLSQCTTRVASRAEMLGAINQESRVSKAVEVMIQHVENLKRMYAKEHAELGELKQALLQNERSFSPLEDEDDCQIKKRSSSLNSKPSSLRRVTIASLPRNLGNMGMVYGIDNNDRFSRRSSSWRILGTKPSEHRPSLQRFISTYSWADTEDDKCDEKTRDASEPAGEEVVERTRKASVSEKRSSPSTWDSTAVCSSVASWVTHLQVSCRRANKVLWLSVVFIVLFAALMSFLTGQFFQTAVEAAPTQEGTSWMSLEHVLWPLTRLRHNGPPPV", "length": 449, "header": "tr|A0A9J7H5E7-1|A0A9J7H5E7_CRIGR Isoform 1 of Inositol 1,4,5-triphosphate receptor associated 2 OS=Cricetulus griseus OX=10029 GN=Irag2 PE=4 SV=1 CANONICAL=A0A9J7H5E7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H5E7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5E7/entry#A0A9J7H5E7-1", "sequence": { "sequence": "MTSGDLDCKSLCKKEEEARSASAMPGTSPAPETAVLGDSGDAGDAQGVDKAASHLEAREELRIVEDGGKGCIAGETEVSEPPKSPVKLVNFQQSENTSASEKEVEAEFLRLSLGLKCDWFTLEKRVRLEERSRDLAEENLKKEITNCLKLLESLAPLCEDDNQAQEIIKKLEKSITFLSQCTTRVASRAEMLGAINQESRVSKAVEVMIQHVENLKRMYAKEHAELGELKQALLQNERSFSPLEDEDDCQIKKRSSSLNSKPSSLRRVTIASLPRNLGNMGMVYGIDNNDRFSRRSSSWRILGTKPSEHRPSLQRFISTYSWADTEDDKCDEKTRDASEPAGEEVVERTRKASVSEKRSSPSTWDSTAVCSSVASWVTHLQVSCRRANKVLWLSVVFIVLFAALMSFLTGQFFQTAVEAAPTQEGTSWMSLEHVLWPLTRLRHNGPPPV", "length": 449, "header": "tr|A0A9J7H5E7-1|A0A9J7H5E7_CRIGR Isoform 1 of Inositol 1,4,5-triphosphate receptor associated 2 OS=Cricetulus griseus OX=10029 GN=Irag2 PE=4 SV=1 CANONICAL=A0A9J7H5E7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H5E7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5E7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100765506", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765506", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "endoplasmic reticulum membrane", "id": "GO:0005789", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005789", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H5E7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5E7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 96, "end_pos": 98, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], 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"A0A9J7H5F2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5F2" } ] }, { "name": "LOC118239406", "type": "synonym", "evidence": [ { "id": "XP_035305883", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305883" } ] } ], "protein_names": [ { "name": "Uncharacterized protein LOC118239406", "type": "synonym", "evidence": [ { "id": "A0A9J7H5F2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5F2/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein LOC118239406", "type": "synonym", "evidence": [ { "id": "XP_035305883", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305883" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048604.1) annotated using gene prediction method: Gnomon. 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This record is derived from a genomic sequence (NC_048599.1) annotated using gene prediction method: Gnomon. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H5H2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5H2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100766517", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766517", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H5H2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5H2" } ], "pmid": "" }, { "name": "structural constituent of ribosome", "id": "GO:0003735", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003735", "evidence": [ { "database": "UniProtKB", "id": 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"A0A9J7H5H6-1", "uniprot_ac": "A0A9J7H5H6", "uniprot_id": "A0A9J7H5H6_CRIGR", "mass": { "chemical_mass": 120529.0, "monoisotopic_mass": 120529.0 }, "refseq": { "ac": "XP_035303974", "name": "uncharacterized protein C16orf96 homolog isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303974" }, "gene_names": [ { "name": "CUNH16orf96", "type": "recommended", "evidence": [ { "id": "A0A9J7H5H6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5H6" } ] }, { "name": "CUNH16orf96", "type": "synonym", "evidence": [ { "id": "XP_035303974", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303974" } ] } ], "protein_names": [ { "name": "Uncharacterized protein C16orf96 homolog isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7H5H6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5H6/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein C16orf96 homolog isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035303974", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303974" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 13% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035303974", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303974" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H5H6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5H6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "CUNH16orf96", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5H6", "locus": {} } ], "crossref": [ { "id": "A0A9J7H5H6", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H5H6", "database": "AlphaFoldDB", "categories": [] }, { "id": "100769587", "url": "https://www.ncbi.nlm.nih.gov/gene/100769587", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR032013", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032013", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100769587", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769587", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H5H6", "url": "https://www.orthodb.org/?gene=A0A9J7H5H6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47080", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47080", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47080:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47080:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF16043", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16043", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035303974", "url": 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"MSFSVTFSELANIAIPQCGVVNFKALHLLIQGILDHIQISGLKKVLSGDEDFLQTSQVVIMPREGEAQTIINPMKRLSNIFDTVVERINKIENQISSMQTMPTTTSLLEASQGTSRPAEEMWNTIKLLKRIEAIEEVTAKFMKTLQDLLNDLYILKRTVETLQKDVDLMKFIFGKVNPEKMELICEDLKVQNRKLGALQREVVTLQDKVDAIPEPKDMVLWSGLHEAMFSPRSKEELGQFEDEDHIAHPTKTFMPVGTTGPLERQEFAQADEFRGPLGLQQTRVSMTETVPGSAWGSWGFARGFARGFARGFARGFARGSARGSAWGSWGFARGFARGFARGFAWCSGQMYRAPFPAMEAGPQHQVPKTGTPLSDLEERDEYEYGYMEQIPRDGAPQDGVPKEEAPQDGVTKEEAPQVGVPKERAPQDGVPKEGAPQDRAPKDRVHHHRAHRRRVPKDGAPQDSASKDTVHKDKEQKDKTPEAQSKHSLSALKKLKSVASAAAATAAAYAAAANTAAQRATAALKAIKDPESKLASSASTMAAGGPLEAFADFLGSGTSPGATDIIPYSDDELQELVETLTPATRPTTPRSALSQAMVTASQAVSPEEKKAAVQYSMSHLAQMPVRHDSLKEELVHLSTKLNQRLDYLAKMGSSGKLGNAVNVLEEKICNLQKARLEEEELERIWGHQIETMKSHYIVLDRTVEKLQIRMDDFKTLKAEIQRLDLIKADKTMMEQELREKANRDALASKASRTDLEVVATELNEIVQSMLLKITTQEDDWKKSLKQLRKDLNTKIVHSDLNSLKKDIEEVWKTLRKLLIEGLRFDPDSAAGFKKKLFERVKCISCDRKIEMMTGPHLITIHNTHWKVRPASANSYEYLQRQLMREQQQQLHYQNFGVHEEGLGSQKDWGDGPRNDTTFKHKSHDLSTIYPYGDPELMDYDTAEVDILGVDGVLYKGRMNSQFGTRTGEKDLAAMKVSSPSVQNMNDRVRSGSILTSSYPPLGTRTSSATTYLHSPSGQPPSLSPVQQLPPLMPHSRDPQEAPASTRHLKSLRLESLTSTHTMDEQPTHETQVRDPTTMRSP", 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"MSFSVTFSELANIAIPQCGVVNFKALHLLIQGILDHIQISGLKKVLSGDEDFLQTSQVVIMPREGEAQTIINPMKRLSNIFDTVVERINKIENQISSMQTMPTTTSLLEASQGTSRPAEEMWNTIKLLKRIEAIEEVTAKFMKTLQDLLNDLYILKRTVETLQKDVDLMKFIFGKVNPEKMELICEDLKVQNRKLGALQREVVTLQDKVDAIPEPKDMVLWSGLHEAMFSPRSKEELGQFEDEDHIAHPTKTFMPVGTTGPLERQEFAQADEFRGPLGLQQTRVSMTETVPGSAWGSWGFARGFARGFARGFARGFARGSARGSAWGSWGFARGFARGFARGFAWCSGQMYRAPFPAMEAGPQHQVPKTGTPLSDLEERDEYEYGYMEQIPRDGAPQDGVPKEEAPQDGVTKEEAPQVGVPKERAPQDGVPKEGAPQDRAPKDRVHHHRAHRRRVPKDGAPQDSASKDTVHKDKEQKDKTPEAQSKHSLSALKKLKSVASAAAATAAAYAAAANTAAQRATAALKAIKDPESKLASSASTMAAGGPLEAFADFLGSGTSPGATDIIPYSDDELQELVETLTPATRPTTPRSALSQAMVTASQAVSPEEKKAAVQYSMSHLAQMPVRHDSLKEELVHLSTKLNQRLDYLAKMGSSGKLGNAVNVLEEKICNLQKARLEEEELERIWGHQIETMKSHYIVLDRTVEKLQIRMDDFKTLKAEIQRLDLIKADKTMMEQELREKANRDALASKASRTDLEVVATELNEIVQSMLLKITTQEDDWKKSLKQLRKDLNTKIVHSDLNSLKKDIEEVWKTLRKLLIEGLRFDPDSAAGFKKKLFERVKCISCDRKIEMMTGPHLITIHNTHWKVRPASANSYEYLQRQLMREQQQQLHYQNFGVHEEGLGSQKDWGDGPRNDTTFKHKSHDLSTIYPYGDPELMDYDTAEVDILGVDGVLYKGRMNSQFGTRTGEKDLAAMKVSSPSVQNMNDRVRSGSILTSSYPPLGTRTSSATTYLHSPSGQPPSLSPVQQLPPLMPHSRDPQEAPASTRHLKSLRLESLTSTHTMDEQPTHETQVRDPTTMRSP", "length": 1081, "header": "tr|A0A9J7H5H6-1|A0A9J7H5H6_CRIGR Isoform 1 of Uncharacterized protein C16orf96 homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=CUNH16orf96 PE=4 SV=1 CANONICAL=A0A9J7H5H6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048604.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035305966", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305966" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H5J4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5J4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Prrg3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5J4", "locus": {} } ], "crossref": [ { "id": "A0A9J7H5J4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H5J4", "database": "AlphaFoldDB", "categories": [] }, { "id": "113837608", "url": "https://www.ncbi.nlm.nih.gov/gene/113837608", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000294", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000294", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017857", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017857", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035972", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035972", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113837608", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113837608", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H5J4", "url": "https://www.orthodb.org/?gene=A0A9J7H5J4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PF00594", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00594", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035305966", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305966", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H5J4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5J4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H5J4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5J4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEEICSYEEVKEVFENKEKTMEFWKGYPNAVYSVRDPAQSSDAMYVVVPLLGVVLLIVIALFIIWRCQLQKATRHHPSYAQNRYLASRTGHNLPRVMVYRGTVHSQGESSGHREAGNNPQIVLGPSRGGRTTVRLESTLYLPELSLSRLSSATPPPSYEEVTAPQEGSSEEASVSYSDPPPKYEEIVAGSPSADK", "length": 195, "header": "tr|A0A9J7H5J4-1|A0A9J7H5J4_CRIGR Isoform 1 of Transmembrane gamma-carboxyglutamic acid protein 3 OS=Cricetulus griseus OX=10029 GN=Prrg3 PE=4 SV=1 CANONICAL=A0A9J7H5J4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H5J4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5J4/entry#A0A9J7H5J4-1", "sequence": { "sequence": "MEEICSYEEVKEVFENKEKTMEFWKGYPNAVYSVRDPAQSSDAMYVVVPLLGVVLLIVIALFIIWRCQLQKATRHHPSYAQNRYLASRTGHNLPRVMVYRGTVHSQGESSGHREAGNNPQIVLGPSRGGRTTVRLESTLYLPELSLSRLSSATPPPSYEEVTAPQEGSSEEASVSYSDPPPKYEEIVAGSPSADK", "length": 195, "header": "tr|A0A9J7H5J4-1|A0A9J7H5J4_CRIGR Isoform 1 of Transmembrane gamma-carboxyglutamic acid protein 3 OS=Cricetulus griseus OX=10029 GN=Prrg3 PE=4 SV=1 CANONICAL=A0A9J7H5J4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035303308", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303308" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H5J8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5J8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "C7H17orf80", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5J8", "locus": {} } ], "crossref": [ { "id": "100752871", "url": "https://www.ncbi.nlm.nih.gov/gene/100752871", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR037694", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037694", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR060516", "url": "https://www.ebi.ac.uk/interpro/entry/IPR060516", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7H5J8", "url": "https://www.orthodb.org/?gene=A0A9J7H5J8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16270", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16270", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16270:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16270:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF28519", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28519", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035303308", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303308", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H5J8", "url": 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"MGDAGPRMEVCPYCKKPFKRLKSHLPHCKMRGTPVSADQKVYQSKPATLSHAKKETGPTGDITKAERKEPEMESAKRNAKSEEGRPEWTAATSPLPAGVLERAGTAEAGGEANDQNQPSFQALRQAKIKVVLQRGTAPLSQALDTSSPERELARDVTGSQGSPRHPSETKASLLVGSMEPVLSNQGKKYPSAQHHAKPATSASLKLDTVDPQRQKFLAKLLDVPASDCHSPKNDSHGVQGGKPSMLIRESSSGDGDHLSGVPLDPGSAETRAKSKSLLLGLYTAPLGKAQVREHQELGLGVELCQTKGNPKNSKSATEVPERACLHHGAKDPISPPKAKTQAALAPPEETLSKLLSIPESGRQHLTSLAVKLPPEDRAQFYGQSQAPAVTLLVGSKRDILDPTSSHQPHAAQAGYHIPSYSAPHSVSKSSFISHVAAAADSGAAPRSLGLEWFPELYPGYVGLGVLPSGPQHWNSVAQMPLPATSQGASVSKGWVKCNTTIKKSGVGGLTMLFAGYFILCCNWSFKHLTSGSGSEL", "length": 536, "header": "tr|A0A9J7H6A3-1|A0A9J7H6A3_CRIGR Computationally mapped isoform of Uncharacterized protein C17orf80 homolog isoform X3 OS=Cricetulus griseus OX=10029 GN=C7H17orf80 PE=4 SV=1 CANONICAL=A0A9J7H5J8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JWH3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5J8/entry#A0A9J7JWH3-1", "sequence": { "sequence": "MGDAGPRMEVCPYCKKPFKRLKSHLPHCKMRGTPVSADQKVYQSKPATLSHAKKETGPTGDITKAERKEPEMESAKRNAKSEEGRPEWTAATSPLPAGVLERAGTAEAGGEANDQNQPSFQALRQAKIKVVLQRGTAPLSQALDTSSPERELARDVTGSQGSPRHPSETKASLLVGSMEPVLSNQGKKYPSAQHHAKPATSASLKLDTVDPQRQKFLAKLLDVPASDCHSPKNDSHGVQGGKPSMLIRESSSGDGDHLSGVPLDPGSAETRAKSKSLLLGLYTAPLGKAQVREHQELGLGVELCQTKGNPKNSKSATEVPERACLHHGAKDPISPPKAKTQAALAPPEETLSKLLSIPESGRQHLTSLAVKLPPEDRAQFYGQSQAPAVTLLVGSKRDILDPTSSHQPHAAQAGYHIPSYSAPHSVSKSSFISHVAAAADSGAAPRSLGLEWFPELYPGYVGLGVLPSGPQHWNSVAQMPLPATSQGASVSKGWVKCNTTIKKSGVGGLTMLFAGYFILCCNWSFKHLKLQRWRK", "length": 535, "header": "tr|A0A9J7JWH3-1|A0A9J7H5J8_CRIGR Computationally mapped isoform of Uncharacterized protein C17orf80 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=C7H17orf80 PE=4 SV=1 CANONICAL=A0A9J7H5J8-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 59, "start_aa": "Thr", "end_pos": 59, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr59", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JWH3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JWH3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JWH3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JWH3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 233, "end_pos": 235, "annotation": "n_glycosylation_sequon" }, { "start_pos": 533, "end_pos": 535, "annotation": "n_glycosylation_sequon" }, { "start_pos": 557, "end_pos": 559, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7H5J8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5J8" }, { "id": "PF28519", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF28519" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Mitochondrial nucleoid-associated protein 1 zinc finger", "eco_id": "ECO_0000259", "start_pos": 9, "end_pos": 31, "start_aa": "Glu", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 59 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 233, "end_pos": 235 }, { "start_pos": 533, "end_pos": 535 }, { "start_pos": 557, "end_pos": 559 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7H5L6-1", "uniprot_ac": "A0A9J7H5L6", "uniprot_id": "A0A9J7H5L6_CRIGR", "mass": { "chemical_mass": 60366.0, "monoisotopic_mass": 60366.0 }, "refseq": { "ac": "XP_035304037", "name": "protein FAM117A isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304037" }, "gene_names": [ { "name": "Fam117a", "type": "recommended", "evidence": [ { "id": "A0A9J7H5L6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5L6" } ] }, { "name": "Fam117a", "type": "synonym", "evidence": [ { "id": "XP_035304037", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304037" } ] } ], "protein_names": [ { "name": "Protein FAM117A isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7H5L6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5L6/entry#names_and_taxonomy" } ] }, { "name": "protein FAM117A isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035304037", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304037" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 19% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035304037", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304037" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H5L6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5L6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Fam117a", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5L6", "locus": {} } ], "crossref": [ { "id": "A0A9J7H5L6", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H5L6", "database": "AlphaFoldDB", "categories": [] }, { "id": "100761276", "url": "https://www.ncbi.nlm.nih.gov/gene/100761276", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026642", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026642", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100761276", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761276", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H5L6", "url": "https://www.orthodb.org/?gene=A0A9J7H5L6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14972", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14972", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14972:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14972:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15388", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15388", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035304037", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304037", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H5L6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5L6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H5L6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5L6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMQGRSPNAAALKNSQFNPAVKRPRPISILLWFASFGWLQRGRGVFDSNPHQAPPPAQLDITWQTFAYYLGVGVTIFLFEPSHWRCRRTSPLPKGPIGSLKDPGGPCPGAAAGGRGGGSWGPGRGGAGGLRRGCSPPAPAGSPRAGLQPLRATVPFQLQQPHQRRDGGGRAASVPCSVAPEKSVCRPQPPQVRRTFSLDTVLSSYLLGQWPRDADGAFTCCTNDKATQTPLSWQEPEGERASFCMHKRSASWGSTDHRKEITKLKQQLQRTKLSRSGKEKERSSPVQGDHAVRGAGRASLPSFPPGSPVLRLSPCLHRSLEGLNQELEEVFVKEQGEEELLRILEVPDGHRAPAPPQNSSCDRSLLLLEPGNMTSSPSVPLVSPQPPGQANREEHRGATEELTSIHSDKASSPGQPAFLEDGSPSPVLAFAASPRPNHSYVFKREPPEGCERVRVFEEATSPGPDLAFLTSCPDKNKVHFNPTGSAFCPVSLIKPLFPSMGFIFRNCPSSPGSPLPPASPRTPPRKDPEASKASSLPFEPWQRTPPSEESVLFQSSLVV", "length": 559, "header": "tr|A0A9J7H5L6-1|A0A9J7H5L6_CRIGR Isoform 1 of Protein FAM117A isoform X2 OS=Cricetulus griseus OX=10029 GN=Fam117a PE=4 SV=1 CANONICAL=A0A9J7H5L6-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H5L6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5L6/entry#A0A9J7H5L6-1", "sequence": { "sequence": "MMQGRSPNAAALKNSQFNPAVKRPRPISILLWFASFGWLQRGRGVFDSNPHQAPPPAQLDITWQTFAYYLGVGVTIFLFEPSHWRCRRTSPLPKGPIGSLKDPGGPCPGAAAGGRGGGSWGPGRGGAGGLRRGCSPPAPAGSPRAGLQPLRATVPFQLQQPHQRRDGGGRAASVPCSVAPEKSVCRPQPPQVRRTFSLDTVLSSYLLGQWPRDADGAFTCCTNDKATQTPLSWQEPEGERASFCMHKRSASWGSTDHRKEITKLKQQLQRTKLSRSGKEKERSSPVQGDHAVRGAGRASLPSFPPGSPVLRLSPCLHRSLEGLNQELEEVFVKEQGEEELLRILEVPDGHRAPAPPQNSSCDRSLLLLEPGNMTSSPSVPLVSPQPPGQANREEHRGATEELTSIHSDKASSPGQPAFLEDGSPSPVLAFAASPRPNHSYVFKREPPEGCERVRVFEEATSPGPDLAFLTSCPDKNKVHFNPTGSAFCPVSLIKPLFPSMGFIFRNCPSSPGSPLPPASPRTPPRKDPEASKASSLPFEPWQRTPPSEESVLFQSSLVV", "length": 559, "header": "tr|A0A9J7H5L6-1|A0A9J7H5L6_CRIGR Isoform 1 of Protein FAM117A isoform X2 OS=Cricetulus griseus OX=10029 GN=Fam117a PE=4 SV=1 CANONICAL=A0A9J7H5L6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H5L6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5L6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H5Q0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5Q0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H5Q0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5Q0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100758255", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758255", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H5Q0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5Q0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "small molecule binding", "id": "GO:0036094", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0036094", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H5Q0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5Q0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 42, "end_pos": 44, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7H5Q0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5Q0" }, { "id": "PF00061", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00061" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Lipocalin/cytosolic fatty-acid binding", "eco_id": "ECO_0000259", "start_pos": 31, "end_pos": 165, "start_aa": "Ser", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 42, "end_pos": 44 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7H6I9-1", "uniprot_ac": "A0A9J7H6I9", "uniprot_id": "A0A9J7H6I9_CRIGR", "mass": { "chemical_mass": 119458.0, "monoisotopic_mass": 119458.0 }, "refseq": { "ac": "XP_035304097", "name": "CMT1A duplicated region transcript 1 protein isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304097" }, "gene_names": [ { "name": "Cdrt1", "type": "recommended", "evidence": [ { "id": "A0A9J7H6I9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6I9" } ] }, { "name": "Cdrt1", "type": "synonym", "evidence": [ { "id": "XP_035304097", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304097" } ] } ], "protein_names": [ { "name": "CMT1A duplicated region transcript 1 protein isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035304097", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304097" }, { "id": "A0A9J7H6I9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6I9/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035304097", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304097" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H6I9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6I9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cdrt1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6I9", "locus": {} } ], "crossref": [ { "id": "A0A9J7H6I9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H6I9", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00200", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00200", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd22136", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22136", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100761995", "url": "https://www.ncbi.nlm.nih.gov/gene/100761995", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051075", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051075", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100761995", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761995", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H6I9", "url": "https://www.orthodb.org/?gene=A0A9J7H6I9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR19872", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19872", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19872:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19872:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00400", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00400", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035304097", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304097", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H5Q9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5Q9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H5Q9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5Q9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H6I9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6I9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H6I9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6I9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MENMEPRIKQAPFFRCESGLDWVPVCQKCETCVLAWKIFATKEWFRRVSDISQRRFLVSILGQLNSLYLLRYFQNILQTTQGKDFIYNRSRIKYSRKEGKEEKIVKSSLTQMLDETVEQKMKEILYWFGNSTHRTKANYTLLLLQMCDTKLLLTAANVIRVLFLKEWNNIAGLHQDSNDVMFYPEKNYNPASDTSYIYWVAKTKTTSLPMSGDFPDKDETESVERETTITEEKGKSSLQCISELNKQLSGKAGISKLEDDPCNLLLSLDDIQALSSGSSKYRDFIRYLPLHLSKYILRMLDKNSLTRCAFVSQHWAALTQQVKMDLSMQSFLQNQISLLQGSYTRGIDPNYASKVSVPVPKFLDEGKRMRSKSQKWKLRTKNDYNLWTAYQNQETQLVQMEERNVFCGTYNIRILSDTKDQNRIIHYNGGDLMALSSNRKIHLLNIMQAREMPIEFRGHAGSIRALYVSEEENILFSGSYDLSIRYWDMTTGSCIRIFYGHQGTITCLDLYKNRLASGARDGQVKEWDIETGKCLKTFKHKDAVLAVKISETYIVSSCERGIVRVWHAVTAQLLKTLMGHEGAVKCLFFNQWHLVSGGADGLVMAWSMVGKYERCLMAFKHPKEVLQVSLLYLRVISACGDGKIRIYNFLNGNCLKVIKVDARGDPVLSFFYQGNRWVVGRCVRMVVQTDSNILLFQFENVKWQYSSDRGKTKKMKDKEEEKEEISLADVHSKSSTQVHSLRDSVSSKQTMTQEFILNKTQKTRVHLKPHKKLSSDDVESHGEEISQPMKKFWKVPMTPDRFLLTVNALQKAHNSEEFAYPGRPKTPVIDAWGPSIPYPRKVLNFKGKSIQYAVDQLRSSNILTDMKQTNIPLEIQKLQPNLKKSLHSPRVQSTIPQPRLIRSRASDILKGDDFFTSSIDGEIRPRVAPLTSMQVIKPNRMLAPRGGTATLSLKKERPRFYTTLDPLRMNTGFMLLTVKEEKEYGEAKMKEYQTSESTKVVDPGKASKAAWIRKIKGLPIDNFMKQGKTAAPELGQNVFI", "length": 1040, "header": "tr|A0A9J7H6I9-1|A0A9J7H6I9_CRIGR Isoform 1 of CMT1A duplicated region transcript 1 protein isoform X2 OS=Cricetulus griseus OX=10029 GN=Cdrt1 PE=4 SV=1 CANONICAL=A0A9J7H6I9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H5Q9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6I9/entry#A0A9J7H5Q9-1", "sequence": { "sequence": 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"MTSNKICSVGQNTCLQNEHHAMPLNSKIDVQSNWNLENDVIIRSPENCELSKNWFFSMENNSVKEVEFFIPSSLHKSLISPKQHLIDSIMEECGRFNIFFSRKKSGFQKVIIRGPAENVEKVNKKFLQLLEEEKAKSYSVAVPVKSKYHQFLKSKNGGNLPNICVKEGARAIFPTPKNRDQDLVTIIGKEEAVKEVKKELELLLKDLEYVVEDSMMINRKFHHYFVMRRDQLIREMTEVYAGMIINFTYEGKQSIRVTMKGEKACVEAAKKHIQRIFEPLGSHVTTQYVIPQKFYTFFMGPMYSRVQQIAKDYKVQLTFPDKEKPTMYIHPAVQENVKEKGGKNTKELAFSNQRKCKTILVSGQMENCKAAMKALEYLIPVTAEVQVPSCLHPYIIGHKGSGIKKLMSEFDVHTQVLQRGGNSDIIYIMGLAAKVEQAKIKLEKQINELQTKLEDHVLRNFKLMFTLDPKYHSKITGHKGLLIAQICTEYDVTIHFPKKGNRKIQDKITITGYKENTFAAKDAIMRVLYKIEKTVSKEIPLNHQVRDSIVGFGGKSMHKIMEEFHVDIRLPPKGSWNPNITVIGLPDNVQEAIDRILELEKYYLSTVINYDSQMDTIRNSCFYKITMDSSKCFIKKDVPHNAKGTPNSPNDDSEEFPKLKQQTPLKVLPWRP", "length": 672, "header": "tr|A0A9J7H5V4-1|A0A9J7H5V4_CRIGR Isoform 1 of Vigilin OS=Cricetulus griseus OX=10029 GN=LOC100765975 PE=4 SV=1 CANONICAL=A0A9J7H5V4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H5V4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5V4/entry#A0A9J7H5V4-1", "sequence": { "sequence": "MTSNKICSVGQNTCLQNEHHAMPLNSKIDVQSNWNLENDVIIRSPENCELSKNWFFSMENNSVKEVEFFIPSSLHKSLISPKQHLIDSIMEECGRFNIFFSRKKSGFQKVIIRGPAENVEKVNKKFLQLLEEEKAKSYSVAVPVKSKYHQFLKSKNGGNLPNICVKEGARAIFPTPKNRDQDLVTIIGKEEAVKEVKKELELLLKDLEYVVEDSMMINRKFHHYFVMRRDQLIREMTEVYAGMIINFTYEGKQSIRVTMKGEKACVEAAKKHIQRIFEPLGSHVTTQYVIPQKFYTFFMGPMYSRVQQIAKDYKVQLTFPDKEKPTMYIHPAVQENVKEKGGKNTKELAFSNQRKCKTILVSGQMENCKAAMKALEYLIPVTAEVQVPSCLHPYIIGHKGSGIKKLMSEFDVHTQVLQRGGNSDIIYIMGLAAKVEQAKIKLEKQINELQTKLEDHVLRNFKLMFTLDPKYHSKITGHKGLLIAQICTEYDVTIHFPKKGNRKIQDKITITGYKENTFAAKDAIMRVLYKIEKTVSKEIPLNHQVRDSIVGFGGKSMHKIMEEFHVDIRLPPKGSWNPNITVIGLPDNVQEAIDRILELEKYYLSTVINYDSQMDTIRNSCFYKITMDSSKCFIKKDVPHNAKGTPNSPNDDSEEFPKLKQQTPLKVLPWRP", "length": 672, "header": "tr|A0A9J7H5V4-1|A0A9J7H5V4_CRIGR Isoform 1 of Vigilin OS=Cricetulus griseus OX=10029 GN=LOC100765975 PE=4 SV=1 CANONICAL=A0A9J7H5V4-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 175, "start_aa": "Thr", "end_pos": 175, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr175", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H5V4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5V4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H5V4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5V4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100765975", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765975", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "mRNA binding", "id": "GO:0003729", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003729", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H5V4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5V4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 246, "end_pos": 248, "annotation": "n_glycosylation_sequon" }, { "start_pos": 579, "end_pos": 581, "annotation": "n_glycosylation_sequon" }, { "start_pos": 60, "end_pos": 62, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7H5V4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5V4" }, { "id": "SM00322", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00322" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "K Homology", "eco_id": "ECO_0000259", "start_pos": 62, "end_pos": 131, "start_aa": "Ser", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 175 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 246, "end_pos": 248 }, { "start_pos": 579, "end_pos": 581 }, { "start_pos": 60, "end_pos": 62 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7H7Z6-1", "uniprot_ac": "A0A9J7H7Z6", "uniprot_id": "A0A9J7H7Z6_CRIGR", "mass": { "chemical_mass": 95842.0, "monoisotopic_mass": 95842.0 }, "refseq": { "ac": "XP_027289709", "name": "zinc finger protein 420 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289709" }, "gene_names": [ { "name": "LOC100762754", "type": "recommended", "evidence": [ { "id": "A0A9J7H7Z6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7Z6" } ] }, { "name": "LOC100762754", "type": "synonym", "evidence": [ { "id": "XP_027289709", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289709" } ] } ], "protein_names": [ { "name": "Zinc finger protein 420 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7H7Z6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7Z6/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 420 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027289709", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289709" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027289709", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289709" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H7Z6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7Z6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100762754", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7Z6", "locus": {} } ], "crossref": [ { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100762754", "url": "https://www.ncbi.nlm.nih.gov/gene/100762754", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050752", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050752", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100762754", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762754", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H7Z6", "url": "https://www.orthodb.org/?gene=A0A9J7H7Z6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24384", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24384", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24384:SF218", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24384:SF218", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027289709", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027289709", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H5V5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5V5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H5V5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5V5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H7Z6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7Z6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H7Z6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7Z6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDASVINAPQGPISFRDVAVDLSQEEWECLDCAQRALYLDVMLENYSNLVFVENHCIYGKYEKILDQGTKHMTHKHVNIQEKHFEFDELGKVIHESAESTLYGRNGIAETCKKDIFAYHREAIVESLNIIRHPSRDTGEEPYIDKESIKSFDFCSIISQPQRIHTTKNEYNNTEYDKSFDSKHKFMLNGINSRRNPHQCRKCGKCFKLYSSLSRHQNAHNTEKPYKCTKCGKSFLHLSQLKVHCKIHCGGKLYKCTNCGKCFSHASHLERHYSFHTGENTYKPSDCGKSFVCCSGLTKHQKTHGGEKLSEFKQCTRTFYTWSHLKNHCRTYTGEKLYICNECGKSLYTFSGLKRHQRIHTGDKHYKCNEFEKRFTEKGSLRTYQAIHTGDKPYKCSECNKSFTKKGSLRIHQRIHTGEKPYKCSECENLFICVSHLRNHRRIHIGEKPYKSSECDKYLTHSSDLTRHQKIHTGEKPYKCSECDKSFTREFYLRTHQRIHTGEKPYKCSECDKYFTHGSDLRKHQKIHTGEKLYKCSECENLFICVSHLRSHQRIHTGERPYKCIQCEKSFTHSSDLRRHQKSHTGEKPYKCSECDKSFTRKFYLRTHQRIHTGEKPYKCSECDKYFTHGSDLRRHQKIHTGDKPYKCSECDKSFTQKCSLTTHQRIHTGERPYKCSECDKSFISKFYLGTHQRIHTGEKPYKCSECDKFFTRKFHLRTHQRIHTGEKPYKCSECDRSFTSSSVLNKHQKIHTGEKLYKCSECDRFFTEKCNLETHQRIHSGEKPYQCSQCKKSFIQKANLRTHQRIHMKEALQI", "length": 814, "header": "tr|A0A9J7H7Z6-1|A0A9J7H7Z6_CRIGR Isoform 1 of Zinc finger protein 420 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100762754 PE=3 SV=1 CANONICAL=A0A9J7H7Z6-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H5V5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7Z6/entry#A0A9J7H5V5-1", "sequence": { "sequence": "MTHKHVNIQEKHFEFDELGKVIHESAESTLYGRNGIAETCKKDIFAYHREAIVESLNIIRHPSRDTGEEPYIDKESIKSFDFCSIISQPQRIHTTKNEYNNTEYDKSFDSKHKFMLNGINSRRNPHQCRKCGKCFKLYSSLSRHQNAHNTEKPYKCTKCGKSFLHLSQLKVHCKIHCGGKLYKCTNCGKCFSHASHLERHYSFHTGENTYKPSDCGKSFVCCSGLTKHQKTHGGEKLSEFKQCTRTFYTWSHLKNHCRTYTGEKLYICNECGKSLYTFSGLKRHQRIHTGDKHYKCNEFEKRFTEKGSLRTYQAIHTGDKPYKCSECNKSFTKKGSLRIHQRIHTGEKPYKCSECENLFICVSHLRNHRRIHIGEKPYKSSECDKYLTHSSDLTRHQKIHTGEKPYKCSECDKSFTREFYLRTHQRIHTGEKPYKCSECDKYFTHGSDLRKHQKIHTGEKLYKCSECENLFICVSHLRSHQRIHTGERPYKCIQCEKSFTHSSDLRRHQKSHTGEKPYKCSECDKSFTRKFYLRTHQRIHTGEKPYKCSECDKYFTHGSDLRRHQKIHTGDKPYKCSECDKSFTQKCSLTTHQRIHTGERPYKCSECDKSFISKFYLGTHQRIHTGEKPYKCSECDKFFTRKFHLRTHQRIHTGEKPYKCSECDRSFTSSSVLNKHQKIHTGEKLYKCSECDRFFTEKCNLETHQRIHSGEKPYQCSQCKKSFIQKANLRTHQRIHMKEALQI", "length": 743, "header": "tr|A0A9J7H5V5-1|A0A9J7H7Z6_CRIGR Computationally mapped isoform of Zinc finger protein 420 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100762754 PE=3 SV=1 CANONICAL=A0A9J7H7Z6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H7Z6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7Z6/entry#A0A9J7H7Z6-1", "sequence": { "sequence": 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}, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7H6W6-1", "uniprot_ac": "A0A9J7H6W6", "uniprot_id": "A0A9J7H6W6_CRIGR", "mass": { "chemical_mass": 145849.0, "monoisotopic_mass": 145849.0 }, "refseq": { "ac": "XP_035306158", "name": "protocadherin-11 X-linked isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306158" }, "gene_names": [ { "name": "LOC100754537", "type": "recommended", "evidence": [ { "id": "A0A9J7H6W6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6W6" } ] }, { "name": "LOC100754537", "type": "synonym", "evidence": [ { "id": "XP_035306158", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306158" } ] } ], "protein_names": [ { "name": "Protocadherin-11 X-linked isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7H6W6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6W6/entry#names_and_taxonomy" } ] }, { "name": "protocadherin-11 X-linked isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035306158", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306158" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048604.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035306158", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306158" } ] }, { "annotation": "Potential calcium-dependent cell-adhesion protein.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KDM7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDM7#function" }, { "database": "UniProtKB", "id": "ARBA00037723", "url": "https://www.uniprot.org/uniprotkb/ARBA00037723#function" }, { "database": "UniProtKB", "id": "A0A9J7H5Y0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5Y0#function" }, { "database": "UniProtKB", "id": "A0A9J7H6U1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6U1#function" }, { "database": "UniProtKB", "id": "A0A9J7H6W6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6W6#function" }, { "database": "UniProtKB", "id": "A0A9J7HA21", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HA21#function" }, { "database": "UniProtKB", "id": "A0A9J7HA22", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HA22#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H6W6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6W6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100754537", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6W6", "locus": {} } ], "crossref": [ { "id": "cd11304", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11304", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100754537", "url": "https://www.ncbi.nlm.nih.gov/gene/100754537", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002126", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002126", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013164", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013164", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013585", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013585", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015919", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015919", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020894", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020894", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050174", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050174", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100754537", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754537", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H6W6", "url": "https://www.orthodb.org/?gene=A0A9J7H6W6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24028", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24028", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24028:SF254", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24028:SF254", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00028", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00028", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08266", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08266", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08374", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08374", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035306158", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306158", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H5Y0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5Y0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H5Y0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5Y0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H6U1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6U1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H6U1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6U1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H6W6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6W6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H6W6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6W6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HA21", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HA21", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HA21-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HA21-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HA22", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HA22", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HA22-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HA22-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KDM7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDM7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KDM7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDM7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDLFFGTYIFAVLLACVVFQSGAQEKNYTVREEMPENVLIGDLLRDLNLSFIPDKSLTMPMQFKLVYKTGDVPLIRIEEGTGEIFTTGARIDREKLCAGVVLDARCFYEVEVAVLPDEIFRLVKIRFLIEDINDNAPLFPATVINISIPENSAINSRYNIPAAFDPDTGINGVQNYKLIKSQNIFGLDVIETPEGEKLPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAILQISVADTNDNGPVFVENEIEVSIPENAPVGSSVAQLHATDADIGENARIHFYFSNLVSNIAKRLFHLNSTTGLITVKEPLDREESASHKLPVLASDGGSTPAKAMVLVNVTDINDNVPSIDIRYIVNPTNGTVLLSENAPLNTKIALITVTDEDSEHNGRVTCFTDHEIPFRLRPVFSNQFLLETAAFLDFESTREYAIKILATDAGKPPLNQTSMLLIKVKDENDNAPVFTQPFISLSVPENNSPGSQLTKVSATDADTGRNAEINYLLGFDAPPEFALDRRTGILTAVKNLDRENQEKYYFTVLAQDNGIPPLTSNASVFLTVLDQNDNIPLFTHSEYNFYVPENLPKHGTVGLITVTDLDYGENSAVTLSVVDMKDQFTIDPQTGVIRPNISFDREKQESYTFYVKAEDGGRVSQTSTAKVTINVVDVNDNKPIFIDPPSNYSFEWVPPSTNPGTVIFKVVAIDDDMGMNAEIRYSIVGGNIKELFMIEQISGNITLKEKCVFSDLGLHKVVVKAMDLGQPDSLFNIVNVNLFVNETVPNATLIYELVRRSIDAPATPSPDTTNSSTSTIDYVKIMVAIVAGTITVLLVILIAAVVRCRHSPHLKASQKNKQNSEWATPNPENMQMIMLKKKKKKKKNAPQTLLLNFVTIEEAKLDDADNDRNSVTLDLPIELEEQTMGKYNWSTTPTTFKPDSPDLARHYKSASPQPAFQIQPETPLNSKHHIIQELPLDNTFVGCDSISKCSSSSSDPYSVSECSYALTTFKTPVSVHARPTMKEVVRSHTPMKEVTTVEIWTHPHPQRRSEVKKAGKSQRRVTFHLPEGSQESISDGGLGDHDAGSTSHALPLGYPQEEYYDHVAPSNRTEGDGNSDPECTFIPGLKKAAEITVQPTVEEASDNCTQECLILGHSDSCWMPAALNHPTPPQIQTTALCHSPPRAYKSGRRYSPPVTQTIAICHSPPVTQVIALCHSPPPVQASSFHHSPPLSPPAQAAAVCYSPPLAQAVAIHRSPPLPQGDTIHHNQGAGVDGLHTIDEGVQGRPRAQFYTTVERIHSDDDSIKVIPLTTFTSGKKARSSRVDSPIIEEHPL", "length": 1324, "header": "tr|A0A9J7H6W6-1|A0A9J7H6W6_CRIGR Isoform 1 of Protocadherin-11 X-linked isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100754537 PE=4 SV=1 CANONICAL=A0A9J7H6W6-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H5Y0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6W6/entry#A0A9J7H5Y0-1", "sequence": { "sequence": "MDLFFGTYIFAVLLACVVFQSGAQEKNYTVREEMPENVLIGDLLRDLNLSFIPDKSLTMPMQFKLVYKTGDVPLIRIEEGTGEIFTTGARIDREKLCAGVVLDARCFYEVEVAVLPDEIFRLVKIRFLIEDINDNAPLFPATVINISIPENSAINSRYNIPAAFDPDTGINGVQNYKLIKSQNIFGLDVIETPEGEKLPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAILQISVADTNDNGPVFVENEIEVSIPENAPVGSSVAQLHATDADIGENARIHFYFSNLVSNIAKRLFHLNSTTGLITVKEPLDREESASHKLPVLASDGGSTPAKAMVLVNVTDINDNVPSIDIRYIVNPTNGTVLLSENAPLNTKIALITVTDEDSEHNGRVTCFTDHEIPFRLRPVFSNQFLLETAAFLDFESTREYAIKILATDAGKPPLNQTSMLLIKVKDENDNAPVFTQPFISLSVPENNSPGSQLTKVSATDADTGRNAEINYLLGFDAPPEFALDRRTGILTAVKNLDRENQEKYYFTVLAQDNGIPPLTSNASVFLTVLDQNDNIPLFTHSEYNFYVPENLPKHGTVGLITVTDLDYGENSAVTLSVVDMKDQFTIDPQTGVIRPNISFDREKQESYTFYVKAEDGGRVSQTSTAKVTINVVDVNDNKPIFIDPPSNYSFEWVPPSTNPGTVIFKVVAIDDDMGMNAEIRYSIVGGNIKELFMIEQISGNITLKEKCVFSDLGLHKVVVKAMDLGQPDSLFNIVNVNLFVNETVPNATLIYELVRRSIDAPATPSPDTTNSSTSTIDYVKIMVAIVAGTITVLLVILIAAVVRCRHSPHLKASQKNKQNSEWATPNPENMQMIMLKKKKKKKKNAPQTLLLNFVTIEEAKLDDADNDRNSVTLDLPIELEEQTMGKYNWSTTPTTFKPDSPDLARHYKSASPQPAFQIQPETPLNSKHHIIQELPLDNTFVGCDSISKCSSSSSDPYSVSECSYALTTFKTPVSVHARPTMKEVVRSHTPMKEVTTVEIWTHPHPQSQRRVTFHLPEGSQESISDGGLGDHDAGSTSHALPLGYPQEEYYDHVAPSNRTEGDGNSDPECTFIPGLKKAAEITVQPTVEEASDNCTQECLILGHSDSCWMPAALNHPTPPQIQTTALCHSPPRAYKSGRRYSPPVTQTIAICHSPPVTQVIALCHSPPPVQASSFHHSPPLSPPAQAAAVCYSPPLAQAVAIHRSPPLPQGDTIHHNQGAGVDGLHTIDEGVQGRPRAQFYTTVERIHSDDDSIKVIPLTTFTSGKKARSSRVDSPIIEEHPL", "length": 1314, "header": "tr|A0A9J7H5Y0-1|A0A9J7H6W6_CRIGR Computationally mapped isoform of Protocadherin-11 X-linked isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100754537 PE=4 SV=1 CANONICAL=A0A9J7H6W6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H6U1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6W6/entry#A0A9J7H6U1-1", "sequence": { "sequence": "MDLFFGTYIFAVLLACVVFQSGAQEKNYTVREEMPENVLIGDLLRDLNLSFIPDKSLTMPMQFKLVYKTGDVPLIRIEEGTGEIFTTGARIDREKLCAGVVLDARCFYEVEVAVLPDEIFRLVKIRFLIEDINDNAPLFPATVINISIPENSAINSRYNIPAAFDPDTGINGVQNYKLIKSQNIFGLDVIETPEGEKLPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAILQISVADTNDNGPVFVENEIEVSIPENAPVGSSVAQLHATDADIGENARIHFYFSNLVSNIAKRLFHLNSTTGLITVKEPLDREESASHKLPVLASDGGSTPAKAMVLVNVTDINDNVPSIDIRYIVNPTNGTVLLSENAPLNTKIALITVTDEDSEHNGRVTCFTDHEIPFRLRPVFSNQFLLETAAFLDFESTREYAIKILATDAGKPPLNQTSMLLIKVKDENDNAPVFTQPFISLSVPENNSPGSQLTKVSATDADTGRNAEINYLLGFDAPPEFALDRRTGILTAVKNLDRENQEKYYFTVLAQDNGIPPLTSNASVFLTVLDQNDNIPLFTHSEYNFYVPENLPKHGTVGLITVTDLDYGENSAVTLSVVDMKDQFTIDPQTGVIRPNISFDREKQESYTFYVKAEDGGRVSQTSTAKVTINVVDVNDNKPIFIDPPSNYSFEWVPPSTNPGTVIFKVVAIDDDMGMNAEIRYSIVGGNIKELFMIEQISGNITLKEKCVFSDLGLHKVVVKAMDLGQPDSLFNIVNVNLFVNETVPNATLIYELVRRSIDAPATPSPDTTNSSTSTIDYVKIMVAIVAGTITVLLVILIAAVVRCRHSPHLKASQKNKQNSEWATPNPENMQMIMLKKKKKKKKNAPQTLLLNFVTIEEAKLDDADNDRNSVTLDLPIELEEQTMGKYNWSTTPTTFKPDSPDLARHYKSASPQPAFQIQPETPLNSKHHIIQELPLDNTFVGCDSISKCSSSSSDPYSVSECSYALTTFKTPVSVHARPTMKEVVRSHTPMKEVTTVEIWTHPHPQRRSEVKKAGKSQRRVTFHLPEGSQESISDGGLGDHDAGSTSHALPLGYPQEEYYDHVAPSNRTEGDGNSDPECTAEITVQPTVEEASDNCTQECLILGHSDSCWMPAALNHPTPPQIQTTALCHSPPRAYKSGRRYSPPVTQTIAICHSPPVTQVIALCHSPPPVQASSFHHSPPLSPPAQAAAVCYSPPLAQAVAIHRSPPLPQGDTIHHNQGAGVDGLHTIDEGVQGRPRAQFYTTVERIHSDDDSIKVIPLTTFTSGKKARSSRVDSPIIEEHPL", "length": 1316, "header": "tr|A0A9J7H6U1-1|A0A9J7H6U1_CRIGR Computationally mapped isoform of Protocadherin-11 X-linked isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100754537 PE=4 SV=1 CANONICAL=A0A9J7H6W6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H6W6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6W6/entry#A0A9J7H6W6-1", "sequence": { "sequence": "MDLFFGTYIFAVLLACVVFQSGAQEKNYTVREEMPENVLIGDLLRDLNLSFIPDKSLTMPMQFKLVYKTGDVPLIRIEEGTGEIFTTGARIDREKLCAGVVLDARCFYEVEVAVLPDEIFRLVKIRFLIEDINDNAPLFPATVINISIPENSAINSRYNIPAAFDPDTGINGVQNYKLIKSQNIFGLDVIETPEGEKLPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAILQISVADTNDNGPVFVENEIEVSIPENAPVGSSVAQLHATDADIGENARIHFYFSNLVSNIAKRLFHLNSTTGLITVKEPLDREESASHKLPVLASDGGSTPAKAMVLVNVTDINDNVPSIDIRYIVNPTNGTVLLSENAPLNTKIALITVTDEDSEHNGRVTCFTDHEIPFRLRPVFSNQFLLETAAFLDFESTREYAIKILATDAGKPPLNQTSMLLIKVKDENDNAPVFTQPFISLSVPENNSPGSQLTKVSATDADTGRNAEINYLLGFDAPPEFALDRRTGILTAVKNLDRENQEKYYFTVLAQDNGIPPLTSNASVFLTVLDQNDNIPLFTHSEYNFYVPENLPKHGTVGLITVTDLDYGENSAVTLSVVDMKDQFTIDPQTGVIRPNISFDREKQESYTFYVKAEDGGRVSQTSTAKVTINVVDVNDNKPIFIDPPSNYSFEWVPPSTNPGTVIFKVVAIDDDMGMNAEIRYSIVGGNIKELFMIEQISGNITLKEKCVFSDLGLHKVVVKAMDLGQPDSLFNIVNVNLFVNETVPNATLIYELVRRSIDAPATPSPDTTNSSTSTIDYVKIMVAIVAGTITVLLVILIAAVVRCRHSPHLKASQKNKQNSEWATPNPENMQMIMLKKKKKKKKNAPQTLLLNFVTIEEAKLDDADNDRNSVTLDLPIELEEQTMGKYNWSTTPTTFKPDSPDLARHYKSASPQPAFQIQPETPLNSKHHIIQELPLDNTFVGCDSISKCSSSSSDPYSVSECSYALTTFKTPVSVHARPTMKEVVRSHTPMKEVTTVEIWTHPHPQRRSEVKKAGKSQRRVTFHLPEGSQESISDGGLGDHDAGSTSHALPLGYPQEEYYDHVAPSNRTEGDGNSDPECTFIPGLKKAAEITVQPTVEEASDNCTQECLILGHSDSCWMPAALNHPTPPQIQTTALCHSPPRAYKSGRRYSPPVTQTIAICHSPPVTQVIALCHSPPPVQASSFHHSPPLSPPAQAAAVCYSPPLAQAVAIHRSPPLPQGDTIHHNQGAGVDGLHTIDEGVQGRPRAQFYTTVERIHSDDDSIKVIPLTTFTSGKKARSSRVDSPIIEEHPL", "length": 1324, "header": "tr|A0A9J7H6W6-1|A0A9J7H6W6_CRIGR Isoform 1 of Protocadherin-11 X-linked isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100754537 PE=4 SV=1 CANONICAL=A0A9J7H6W6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HA21-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6W6/entry#A0A9J7HA21-1", "sequence": { "sequence": "MDLFFGTYIFAVLLACVVFQSGAQEKNYTVREEMPENVLIGDLLRDLNLSFIPDKSLTMPMQFKLVYKTGDVPLIRIEEGTGEIFTTGARIDREKLCAGVVLDARCFYEVEVAVLPDEIFRLVKIRFLIEDINDNAPLFPATVINISIPENSAINSRYNIPAAFDPDTGINGVQNYKLIKSQNIFGLDVIETPEGEKLPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAILQISVADTNDNGPVFVENEIEVSIPENAPVGSSVAQLHATDADIGENARIHFYFSNLVSNIAKRLFHLNSTTGLITVKEPLDREESASHKLPVLASDGGSTPAKAMVLVNVTDINDNVPSIDIRYIVNPTNGTVLLSENAPLNTKIALITVTDEDSEHNGRVTCFTDHEIPFRLRPVFSNQFLLETAAFLDFESTREYAIKILATDAGKPPLNQTSMLLIKVKDENDNAPVFTQPFISLSVPENNSPGSQLTKVSATDADTGRNAEINYLLGFDAPPEFALDRRTGILTAVKNLDRENQEKYYFTVLAQDNGIPPLTSNASVFLTVLDQNDNIPLFTHSEYNFYVPENLPKHGTVGLITVTDLDYGENSAVTLSVVDMKDQFTIDPQTGVIRPNISFDREKQESYTFYVKAEDGGRVSQTSTAKVTINVVDVNDNKPIFIDPPSNYSFEWVPPSTNPGTVIFKVVAIDDDMGMNAEIRYSIVGGNIKELFMIEQISGNITLKEKCVFSDLGLHKVVVKAMDLGQPDSLFNIVNVNLFVNETVPNATLIYELVRRSIDAPATPSPDTTNSSTSTIDYVKIMVAIVAGTITVLLVILIAAVVRCRHSPHLKASQKNKQNSEWATPNPENMQMIMLKKKKKKKKNAPQTLLLNFVTIEEAKLDDADNDRNSVTLDLPIELEEQTMGKYNWSTTPTTFKPDSPDLARHYKSASPQPAFQIQPETPLNSKHHIIQELPLDNTFVGCDSISKCSSSSSDPYSVSECSYALTTFKTPVSVHARPTMKEVVRSHTPMKEVTTVEIWTHPHPQSQRRVTFHLPEGSQESISDGGLGDHDAGSTSHALPLGYPQEEYYDHVAPSNRTEGDGNSDPECTAEITVQPTVEEASDNCTQECLILGHSDSCWMPAALNHPTPPQIQTTALCHSPPRAYKSGRRYSPPVTQTIAICHSPPVTQVIALCHSPPPVQASSFHHSPPLSPPAQAAAVCYSPPLAQAVAIHRSPPLPQGDTIHHNQGAGVDGLHTIDEGVQGRPRAQFYTTVERIHSDDDSIKVIPLTTFTSGKKARSSRVDSPIIEEHPL", "length": 1306, "header": "tr|A0A9J7HA21-1|A0A9J7HA21_CRIGR Computationally mapped isoform of Protocadherin-11 X-linked isoform X5 OS=Cricetulus griseus OX=10029 GN=LOC100754537 PE=4 SV=1 CANONICAL=A0A9J7H6W6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HA22-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6W6/entry#A0A9J7HA22-1", "sequence": { "sequence": "MDLFFGTYIFAVLLACVVFQSGAQEKNYTVREEMPENVLIGDLLRDLNLSFIPDKSLTMPMQFKLVYKTGDVPLIRIEEGTGEIFTTGARIDREKLCAGVVLDARCFYEVEVAVLPDEIFRLVKIRFLIEDINDNAPLFPATVINISIPENSAINSRYNIPAAFDPDTGINGVQNYKLIKSQNIFGLDVIETPEGEKLPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAILQISVADTNDNGPVFVENEIEVSIPENAPVGSSVAQLHATDADIGENARIHFYFSNLVSNIAKRLFHLNSTTGLITVKEPLDREESASHKLPVLASDGGSTPAKAMVLVNVTDINDNVPSIDIRYIVNPTNGTVLLSENAPLNTKIALITVTDEDSEHNGRVTCFTDHEIPFRLRPVFSNQFLLETAAFLDFESTREYAIKILATDAGKPPLNQTSMLLIKVKDENDNAPVFTQPFISLSVPENNSPGSQLTKVSATDADTGRNAEINYLLGFDAPPEFALDRRTGILTAVKNLDRENQEKYYFTVLAQDNGIPPLTSNASVFLTVLDQNDNIPLFTHSEYNFYVPENLPKHGTVGLITVTDLDYGENSAVTLSVVDMKDQFTIDPQTGVIRPNISFDREKQESYTFYVKAEDGGRVSQTSTAKVTINVVDVNDNKPIFIDPPSNYSFEWVPPSTNPGTVIFKVVAIDDDMGMNAEIRYSIVGGNIKELFMIEQISGNITLKEKCVFSDLGLHKVVVKAMDLGQPDSLFNIVNVNLFVNETVPNATLIYELVRRSIDAPATPSPDTTNSSTSTIDYVKIMVAIVAGTITVLLVILIAAVVRCRHSPHLKASQKNKQNSEWATPNPENMQMIMLKKKKKKKKNAPQTLLLNFVTIEEAKLDDADNDRNSVTLDLPIELEEQTMGKYNWSTTPTTFKPDSPDLARHYKSASPQPAFQIQPETPLNSKHHIIQELPLDNTFVGCDSISKCSSSSSDPYSVSECSYALTTFKTPVSVHARPSQRRVTFHLPEGSQESISDGGLGDHDAGSTSHALPLGYPQEEYYDHVAPSNRTEGDGNSDPECTFIPGLKKEITVQPTVEEASDNCTQECLILGHSDSCWMPAALNHPTPPQIQTTALCHSPPRAYKSGRRYSPPVTQTIAICHSPPVTQVIALCHSPPPVQASSFHHSPPLSPPAQAAAVCYSPPLAQAVAIHRSPPLPQGDTIHHNQGAGVDGLHTIDEGVQGRPRAQFYTTVERIHSDDDSIKVIPLTTFTSGKKARSSRVDSPIIEEHPL", "length": 1285, "header": "tr|A0A9J7HA22-1|A0A9J7HA22_CRIGR Computationally mapped isoform of Protocadherin-11 X-linked isoform X7 OS=Cricetulus griseus OX=10029 GN=LOC100754537 PE=4 SV=1 CANONICAL=A0A9J7H6W6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KDM7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6W6/entry#A0A9J7KDM7-1", "sequence": { "sequence": "MDLFFGTYIFAVLLACVVFQSGAQEKNYTVREEMPENVLIGDLLRDLNLSFIPDKSLTMPMQFKLVYKTGDVPLIRIEEGTGEIFTTGARIDREKLCAGVVLDARCFYEVEVAVLPDEIFRLVKIRFLIEDINDNAPLFPATVINISIPENSAINSRYNIPAAFDPDTGINGVQNYKLIKSQNIFGLDVIETPEGEKLPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAILQISVADTNDNGPVFVENEIEVSIPENAPVGSSVAQLHATDADIGENARIHFYFSNLVSNIAKRLFHLNSTTGLITVKEPLDREESASHKLPVLASDGGSTPAKAMVLVNVTDINDNVPSIDIRYIVNPTNGTVLLSENAPLNTKIALITVTDEDSEHNGRVTCFTDHEIPFRLRPVFSNQFLLETAAFLDFESTREYAIKILATDAGKPPLNQTSMLLIKVKDENDNAPVFTQPFISLSVPENNSPGSQLTKVSATDADTGRNAEINYLLGFDAPPEFALDRRTGILTAVKNLDRENQEKYYFTVLAQDNGIPPLTSNASVFLTVLDQNDNIPLFTHSEYNFYVPENLPKHGTVGLITVTDLDYGENSAVTLSVVDMKDQFTIDPQTGVIRPNISFDREKQESYTFYVKAEDGGRVSQTSTAKVTINVVDVNDNKPIFIDPPSNYSFEWVPPSTNPGTVIFKVVAIDDDMGMNAEIRYSIVGGNIKELFMIEQISGNITLKEKCVFSDLGLHKVVVKAMDLGQPDSLFNIVNVNLFVNETVPNATLIYELVRRSIDAPATPSPDTTNSSTSTIDYVKIMVAIVAGTITVLLVILIAAVVRCRHSPHLKASQKNKQNSEWATPNPENMQMIMLKKKKKKKKNAPQTLLLNFVTIEEAKLDDADNDRNSVTLDLPIELEEQTMGKYNWSTTPTTFKPDSPDLARHYKSASPQPAFQIQPETPLNSKHHIIQELPLDNTFVGCDSISKCSSSSSDPYSVSECSYALTTFKTPVSVHARPSQRRVTFHLPEGSQESISDGGLGDHDAGSTSHALPLGYPQEEYYDHVAPSNRTEGDGNSDPECTFIPGLKKAAEITVQPTVEEASDNCTQECLILGHSDSCWMPAALNHPTPPQIQTTALCHSPPRAYKSGRRYSPPVTQTIAICHSPPVTQVIALCHSPPPVQASSFHHSPPLSPPAQAAAVCYSPPLAQAVAIHRSPPLPQGDTIHHNQGAGVDGLHTIDEGVQGRPRAQFYTTVERIHSDDDSIKVIPLTTFTSGKKARSSRVDSPIIEEHPL", "length": 1287, "header": "tr|A0A9J7KDM7-1|A0A9J7H6W6_CRIGR Computationally mapped isoform of Protocadherin-11 X-linked isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100754537 PE=4 SV=1 CANONICAL=A0A9J7H6W6-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 795, "start_aa": "Thr", "end_pos": 795, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr795", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KDM7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDM7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KDM7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDM7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100754537", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754537", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H6W6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6W6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H6W6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6W6" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "homophilic cell adhesion via plasma membrane adhesion molecules", "id": "GO:0007156", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007156", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H6W6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6W6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1099, "end_pos": 1101, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1135, "end_pos": 1137, "annotation": "n_glycosylation_sequon" }, { "start_pos": 145, "end_pos": 147, "annotation": "n_glycosylation_sequon" }, { "start_pos": 27, "end_pos": 29, "annotation": "n_glycosylation_sequon" }, { "start_pos": 303, "end_pos": 305, "annotation": "n_glycosylation_sequon" }, { "start_pos": 344, "end_pos": 346, "annotation": "n_glycosylation_sequon" }, { "start_pos": 365, "end_pos": 367, "annotation": "n_glycosylation_sequon" }, { "start_pos": 447, "end_pos": 449, "annotation": "n_glycosylation_sequon" }, { "start_pos": 478, "end_pos": 480, "annotation": "n_glycosylation_sequon" }, { "start_pos": 48, "end_pos": 50, "annotation": "n_glycosylation_sequon" }, { "start_pos": 553, "end_pos": 555, "annotation": "n_glycosylation_sequon" }, { "start_pos": 628, "end_pos": 630, "annotation": "n_glycosylation_sequon" }, { "start_pos": 679, "end_pos": 681, "annotation": "n_glycosylation_sequon" }, { "start_pos": 732, "end_pos": 734, "annotation": "n_glycosylation_sequon" }, { "start_pos": 773, "end_pos": 775, "annotation": "n_glycosylation_sequon" }, { "start_pos": 778, "end_pos": 780, "annotation": "n_glycosylation_sequon" }, { "start_pos": 802, "end_pos": 804, "annotation": "n_glycosylation_sequon" }, { "start_pos": 920, "end_pos": 922, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7H6W6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6W6" }, { "id": "PS50268", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50268" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cadherin", "eco_id": "ECO_0000259", "start_pos": 53, "end_pos": 139, "start_aa": "Pro", "end_aa": "Phe", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 795 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1099, "end_pos": 1101 }, { "start_pos": 1135, "end_pos": 1137 }, { "start_pos": 145, "end_pos": 147 }, { "start_pos": 27, "end_pos": 29 }, { "start_pos": 303, "end_pos": 305 }, { "start_pos": 344, "end_pos": 346 }, { "start_pos": 365, "end_pos": 367 }, { "start_pos": 447, "end_pos": 449 }, { "start_pos": 478, "end_pos": 480 }, { "start_pos": 48, "end_pos": 50 }, { "start_pos": 553, "end_pos": 555 }, { "start_pos": 628, "end_pos": 630 }, { "start_pos": 679, "end_pos": 681 }, { "start_pos": 732, "end_pos": 734 }, { "start_pos": 773, "end_pos": 775 }, { "start_pos": 778, "end_pos": 780 }, { "start_pos": 802, "end_pos": 804 }, { "start_pos": 920, "end_pos": 922 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7H5Y9-1", "uniprot_ac": "A0A9J7H5Y9", "uniprot_id": "A0A9J7H5Y9_CRIGR", "mass": { "chemical_mass": 16326.0, "monoisotopic_mass": 16326.0 }, "refseq": { "ac": "XP_035304918", "name": "zinc finger protein 431-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304918" }, "gene_names": [ { "name": "LOC113837036", "type": "recommended", "evidence": [ { "id": "A0A9J7H5Y9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5Y9" } ] }, { "name": "LOC113837036", "type": "synonym", "evidence": [ { "id": "XP_035304918", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304918" } ] } ], "protein_names": [ { "name": "Zinc finger protein 431-like", "type": "synonym", "evidence": [ { "id": "A0A9J7H5Y9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5Y9/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 431-like", "type": "synonym", "evidence": [ { "id": "XP_035304918", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304918" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048601.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: incomplete on the carboxy end.", "evidence": [ { "database": "RefSeq", "id": "XP_035304918", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304918" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H5Y9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5Y9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113837036", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5Y9", "locus": {} } ], "crossref": [ { "id": "A0A9J7H5Y9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H5Y9", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "113837036", "url": "https://www.ncbi.nlm.nih.gov/gene/113837036", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050758", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050758", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113837036", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113837036", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H5Y9", "url": "https://www.orthodb.org/?gene=A0A9J7H5Y9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23234", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23234", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23234:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23234:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13465", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13465", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035304918", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304918", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H5Y9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5Y9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H5Y9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5Y9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDAVIYDDVYINFTQEEWAFLDPSEKRLCKDVTLDTYRNLIDIGYSWEDHNIEENCKTFRSHRRHHQSCLRLHKRTHTGEKNHECDQCGKSFASNSHLQTHKRSHTGEKPYACNQCGKAFSQQSSLLSHKITHTGEKPY", "length": 139, "header": "tr|A0A9J7H5Y9-1|A0A9J7H5Y9_CRIGR Isoform 1 of Zinc finger protein 431-like OS=Cricetulus griseus OX=10029 GN=LOC113837036 PE=4 SV=1 CANONICAL=A0A9J7H5Y9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H5Y9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5Y9/entry#A0A9J7H5Y9-1", "sequence": { "sequence": "MDAVIYDDVYINFTQEEWAFLDPSEKRLCKDVTLDTYRNLIDIGYSWEDHNIEENCKTFRSHRRHHQSCLRLHKRTHTGEKNHECDQCGKSFASNSHLQTHKRSHTGEKPYACNQCGKAFSQQSSLLSHKITHTGEKPY", "length": 139, "header": "tr|A0A9J7H5Y9-1|A0A9J7H5Y9_CRIGR Isoform 1 of Zinc finger protein 431-like OS=Cricetulus griseus OX=10029 GN=LOC113837036 PE=4 SV=1 CANONICAL=A0A9J7H5Y9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H5Y9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5Y9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H5Y9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5Y9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:113837036", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113837036", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H5Y9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5Y9" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H5Y9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5Y9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H5Y9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5Y9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 12, "end_pos": 14, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7H5Y9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H5Y9" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": 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"uniprot_canonical_ac": "A0A9J7H602-1", "uniprot_ac": "A0A9J7H602", "uniprot_id": "A0A9J7H602_CRIGR", "mass": { "chemical_mass": 245167.0, "monoisotopic_mass": 245167.0 }, "refseq": { "ac": "XP_035306190", "name": "armadillo repeat-containing X-linked protein 4 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306190" }, "gene_names": [ { "name": "Armcx4", "type": "recommended", "evidence": [ { "id": "A0A9J7H602", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H602" } ] }, { "name": "Armcx4", "type": "synonym", "evidence": [ { "id": "XP_035306190", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306190" } ] } ], "protein_names": [ { "name": "Armadillo repeat-containing X-linked protein 4 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7H602", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H602/entry#names_and_taxonomy" } ] }, { "name": "armadillo repeat-containing X-linked protein 4 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035306190", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306190" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048604.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035306190", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306190" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H602", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H602" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Armcx4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H602", "locus": {} } ], "crossref": [ { "id": "100753309", "url": "https://www.ncbi.nlm.nih.gov/gene/100753309", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006911", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006911", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100753309", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753309", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H602", "url": "https://www.orthodb.org/?gene=A0A9J7H602", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47081", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47081", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47081:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47081:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04826", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04826", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035306190", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306190", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H602", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H602", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H602-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H602-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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"MGRVQDVGWATAGLVIWAGTCYCIYRLTKGRYQSVSRDGSRIKTETVVGEENQTMATDEAMAGAETETRAMTEPETGEGGEPVAEVDTKVPVLVRPNINYQAKRILEEEIETHSETSLLVETMVMTDAVTFTEATGQAKEVTMKEAVTQTDVETEEVGKKEAVTQTKSKAWAVADRAEVKKEAMTQTKAEAPSLAEKETEINRVTVTQSEVLAVTKEVVKIGTMNETGIVAEATIRALEETVCVTRTQSETRLDVTVDTNENSNDMPLIVAGVDVKSYAQPQAVTIIQNDDMIGDEGDDQGNLKNTSKAGSAVDKDTSAQPHIVANILAEAMPGAKDDACDNTNDICEAEADLRTCIIQPETVATIQAEAMSGATTDDGEDASDVFKAMTGAEITDTNPQAVTSDHIEATPDANAKGKGNASATAKAGAKANTKTNLQTDALPETEDKNRSDTNDMAKAEASVDVVSCAQPDPVASVQGDDLPDGKIKPKDNANTISKEGAQTTAQSQGEALPNTKGKARGKAKAKCKAGAAADVKPCAQPQGGIKTQAEPLSDSKVDSKSDSNAVSKAGAKADQKACAQPQPVVNCQNEALPATKNKVKGNPNPMPKAEAGTATAGSAQTNVVTSSQGETTPGAKTKVKGNRNSVPKAGAGPDTTGSAQNQTVASSHSEALPGAKNKVKSNPNVVPKAEAGVGACPQSVAVSQGTALTGTKAKVKGNSNAVSKPDAGAGTMGSAKAVTSSQGETLPGSKSKVKGNSNAVPKADAGATTTDSVQPQAEALLGARNKVRGNSNSVPKAESGASTILALASSQAEALLGARNKVRGNSNTVPKAEAGSGARGSAQSQAVVSSQNETLLGARNKIRANASTKSGAKTGTRGSAQPQAVVSSQSEALLGARDKGLSSSQVEATADNKTHARPVAGAVPTSESVSGAGAQSNMHDYYWNGIGVEDWIAAERWIKFRFQTIDGDWENSVTWAEDENGAAVGPWSGANDKTGIVSSWAVACDEASIKSWTGARTENEVALGSWVGAGDQTSGALWAGAQAADGTWVADKTGGASWTGAENQLSAGSWVVSGNQAITGPWAVSQVSDGSWPAVQASGVSWVVDQATGTWTVADNQAGAMSWAGAGNIVSIGYWTGAVDQTNAVAWTGTAEQVGGEVKPRYEDQASEKGTWAGAAVQTSGDSRLGPEAQSSGRAWAETADQASAASRLGTVDPSSGVSWPVTGAQVGGVSTSGSADQSSSGSWTGTRNLTGERSWTGTGDQSNGGAKPGFENQTGAEGSWTGTISQASGGSKSVPGDQSAGRSWTNSGDQLSGAFLVGPLDQASGNSQPGSGDLVASGVNPSSGGGCWAGSGDQSGGESRMGTRGQTNGQSWPGTGDQTGGWYCTYTPTQAIGGASWGATAQDIGVSKPVQVNQSSSGSWLGSGTQVGGVSWTGDQVGGCPKPGFEDQAIGGGFWAAAGDQSTGGSRPAVSEDQSSGGVSWGGAGAHVIGGNRTCPTDQASGASWAGIGSQVSGGSWVGPVDQTSGCSKSGFEDQTCGGGSWAGAVDQTSGESWPGSRASNEASGGSKLDTQEQTSGRFLVSAEVEANEGFWFGPGSEAFIGSWCWTEEATILPIANMNDETSGESTSGTKEETSASSGLEDEKKTSTESWTRAEETALAGTCVGGEPESVAGAEAEVEAEAEAEAEAEAEAEAEAEAEAEVGVETRAEAGAAAAAAADSETGAEAGPRVEAEAGAEAGTGFWSWDGDAATKGSRLGAEAEAEVEAGAGGGAEAEAETENSMGFWFWDGDATTKGSKLGAEAGAEAGIGTGAGAEAEAVTETSMGFWFWEGDGAAKGSKLGAEPEAGVGAGAEAVAETVAETSMEFWSWDGDAATKGSRLGAEVEAGAGVVAEAGAETRMGFWFWNEDSTTKGSGLGAEAGAGVVAEGGAEARMEFWSWDGDAASKGSRLGVEAEAGLGSWTFSTDVNDDDDDDEELSRESSPGIEEISLRNLFGAESEDNNDLRSTNEKDTNSESGTGDKDSTKDKFDAADGVDIRSWFCTGNENRCEDESTSQVKAKKSTEPRGIYPPMVPGAGMGVWDGTIVCSESKLLHQTSFPGEDGFRKQANTGAHSCNCRCRREVNLDPQDLEKLICMIEMTEDPSVHEIATNALYNSADYPYPQEIDRNIGGISVIQSLLSNPHPTVRQKALNALNNISVAAENHRKVKTYLSQVCEDTVTYPLNSNVQVAGLRLIRHLTITSEYQHMVTNYISEFLRLLAMGSGETKDHVLGMLVNFSKNPSMTKDLLIANAPTALINIFSKKETKENILNALLLFENINHHFKKRAKTYPQDRFSKSSLYFLFQRPKACAKKLRALAADCSDPEVKERVEVLINKL", "length": 2377, "header": "tr|A0A9J7H602-1|A0A9J7H602_CRIGR Isoform 1 of Armadillo repeat-containing X-linked protein 4 isoform X2 OS=Cricetulus griseus OX=10029 GN=Armcx4 PE=4 SV=1 CANONICAL=A0A9J7H602-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H602", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H602" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H602", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H602" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100753309", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753309", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 1249, "end_pos": 1251, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1273, "end_pos": 1275, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1414, "end_pos": 1416, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1493, "end_pos": 1495, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2196, "end_pos": 2198, "annotation": "n_glycosylation_sequon" }, { "start_pos": 225, "end_pos": 227, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2276, "end_pos": 2278, "annotation": "n_glycosylation_sequon" }, { "start_pos": 305, "end_pos": 307, "annotation": "n_glycosylation_sequon" }, { "start_pos": 420, "end_pos": 422, "annotation": "n_glycosylation_sequon" }, { "start_pos": 449, "end_pos": 451, "annotation": "n_glycosylation_sequon" }, { "start_pos": 52, "end_pos": 54, "annotation": "n_glycosylation_sequon" }, { "start_pos": 661, "end_pos": 663, "annotation": "n_glycosylation_sequon" }, { "start_pos": 852, "end_pos": 854, "annotation": "n_glycosylation_sequon" }, { "start_pos": 865, "end_pos": 867, "annotation": "n_glycosylation_sequon" }, { "start_pos": 912, "end_pos": 914, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7H602", "database": "UniProtKB", "url": 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"start_pos": 449, "end_pos": 451 }, { "start_pos": 52, "end_pos": 54 }, { "start_pos": 661, "end_pos": 663 }, { "start_pos": 852, "end_pos": 854 }, { "start_pos": 865, "end_pos": 867 }, { "start_pos": 912, "end_pos": 914 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7H605-1", "uniprot_ac": "A0A9J7H605", "uniprot_id": "A0A9J7H605_CRIGR", "mass": { "chemical_mass": 37371.0, "monoisotopic_mass": 37371.0 }, "refseq": { "ac": "XP_035304951", "name": "LOW QUALITY PROTEIN: GTPase IMAP family member 5-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304951" }, "gene_names": [ { "name": "LOC118239312", "type": "recommended", "evidence": [ { "id": "A0A9J7H605", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H605" } ] }, { "name": "LOC118239312", "type": "synonym", "evidence": [ { "id": "XP_035304951", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304951" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: GTPase IMAP family member 5-like", "type": "synonym", "evidence": [ { "id": "XP_035304951", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304951" }, { "id": "A0A9J7H605", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H605/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 9% of CDS bases internal stop codons :: corrected 2 genomic stop codon ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048601.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035304951", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304951" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H605", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H605" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC118239312", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H605", "locus": {} } ], "crossref": [ { "id": "cd01852", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01852", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "118239312", "url": "https://www.ncbi.nlm.nih.gov/gene/118239312", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006703", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006703", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045058", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045058", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:118239312", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118239312", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H605", "url": "https://www.orthodb.org/?gene=A0A9J7H605", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10903", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10903", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10903:SF69", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10903:SF69", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04548", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04548", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035304951", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304951", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H605", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H605", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H605-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H605-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTLHLLANTPEHEVCPAELSTRTHDVTVXRLCKXGINFLSSTGSREACYIANSCWLRILLVGKSGCGKSATGNSILCRQAFESRLRAQSVTRTSMAEMGTWKGRSFLVVDTPPIFESEAQNQDKDIADCYLLCAPGPHVLLLVTQLGRFTAQDTIAVRRVKEIFGAGVMRHMILLFTHKEDLANETLDEFVTHTDNHSLRSLVQECGRRYCAFNNRASGEEQQGQLAELMAQVRALEQECEGSFHSNDLFLHAHVLLSDNTSESQEAYRCYLAKVRQEVARQKRELEEQEGSLGAKMLCRVKMCLGSHIAAATLLIMCGLIFITILVNLCITQEH", "length": 335, "header": "tr|A0A9J7H605-1|A0A9J7H605_CRIGR Isoform 1 of LOW QUALITY PROTEIN: GTPase IMAP family member 5-like OS=Cricetulus griseus OX=10029 GN=LOC118239312 PE=3 SV=1 CANONICAL=A0A9J7H605-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H605-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H605/entry#A0A9J7H605-1", "sequence": { "sequence": "MTLHLLANTPEHEVCPAELSTRTHDVTVXRLCKXGINFLSSTGSREACYIANSCWLRILLVGKSGCGKSATGNSILCRQAFESRLRAQSVTRTSMAEMGTWKGRSFLVVDTPPIFESEAQNQDKDIADCYLLCAPGPHVLLLVTQLGRFTAQDTIAVRRVKEIFGAGVMRHMILLFTHKEDLANETLDEFVTHTDNHSLRSLVQECGRRYCAFNNRASGEEQQGQLAELMAQVRALEQECEGSFHSNDLFLHAHVLLSDNTSESQEAYRCYLAKVRQEVARQKRELEEQEGSLGAKMLCRVKMCLGSHIAAATLLIMCGLIFITILVNLCITQEH", "length": 335, "header": "tr|A0A9J7H605-1|A0A9J7H605_CRIGR Isoform 1 of LOW QUALITY PROTEIN: GTPase IMAP family member 5-like OS=Cricetulus griseus OX=10029 GN=LOC118239312 PE=3 SV=1 CANONICAL=A0A9J7H605-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H605", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H605" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H605", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H605" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:118239312", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118239312", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H605", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H605" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 184, "end_pos": 186, "annotation": "n_glycosylation_sequon" }, { "start_pos": 196, "end_pos": 198, "annotation": "n_glycosylation_sequon" }, { "start_pos": 260, "end_pos": 262, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7H605", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H605" }, { "id": "PS51720", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51720" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "AIG1-type G", "eco_id": "ECO_0000259", "start_pos": 53, "end_pos": 254, "start_aa": "Ser", "end_aa": "His", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 184, "end_pos": 186 }, { "start_pos": 196, "end_pos": 198 }, { "start_pos": 260, "end_pos": 262 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7H628-1", "uniprot_ac": "A0A9J7H628", "uniprot_id": "A0A9J7H628_CRIGR", "mass": { "chemical_mass": 156715.0, "monoisotopic_mass": 156715.0 }, "refseq": { "ac": "XP_035305554", "name": "LOW QUALITY PROTEIN: regulator of G-protein signaling 22 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305554" }, "gene_names": [ { "name": "Rgs22", "type": "recommended", "evidence": [ { "id": "A0A9J7H628", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H628" } ] }, { "name": "Rgs22", "type": "synonym", "evidence": [ { "id": "XP_035305554", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305554" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: regulator of G-protein signaling 22 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035305554", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305554" }, { "id": "A0A9J7H628", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H628/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 8% of CDS bases internal stop codons :: corrected 1 genomic stop codon ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048603.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035305554", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305554" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H628", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H628" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Rgs22", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H628", "locus": {} } ], "crossref": [ { "id": "cd08725", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08725", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd08727", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08727", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100763225", "url": "https://www.ncbi.nlm.nih.gov/gene/100763225", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR016137", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016137", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036305", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036305", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042651", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042651", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044926", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044926", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048074", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048074", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048075", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048075", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100763225", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763225", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H628", "url": "https://www.orthodb.org/?gene=A0A9J7H628", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46583", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46583", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46583:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46583:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00615", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00615", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035305554", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305554", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H628", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H628", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H628-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H628-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MYSRASAIREFHLVQKEVRWIRVRKNLTSCLVSDPPDITEEEFTASPHSPASSSAFPFLSCVLVTGTLGIESSKFVFFTPGWQASPSLSCGVFLRLGTPLLCSVVLRVHLKSQLENYLATDGFLVDYFNEFLSLPTFSEAIRFNVDYGVFEVVNNAPQLLEKQLKRILQSQKPRNPIYDVIRKGKSDAKPFRKNVPREDETINITYTIMCLNREQGIKWIKRKRLPAFLESDCYFEYRLAKLISQATWSSSGMNFIVGTSIPPWALRKPPTPPPPSIEEENILIMKKFYVSLGQASCTQTKDWFTLAKQSERTVMSFSLPCCVSHHKISQPGLSSISESLIYEDGVHPRTIRRTSKMGPESEEEEEGSISIKDSPSQALLRIYLEKRVIQEKTLHFANVDEFLNAYIIFILREAMKKISDHSLSSTSDYTNFYNISRVVFDKTEPAPSKKAVSSPPNETADQVSEEKLEKVSLSSKSESTASESRADWCISHRTYDIGNRKEFERFKKFLKGTSGERYWWLWMDIERLKVLKDQGRHQRHLEKMKKCYLLSSGELYLSTEILSKFKLLHGSLWTEEHLKKIQIEVLKPLLLYWAPRFCVTHSSSTKNASAELKFWRLRQQKPREDVDPFPQMATLLPLRPKSCIPQVTEVQGDEVSLFQQAKSPNKLSRVSTGTQKMGKSEPLYRIPSKDDSLEKGXRRLKLGNTVVRLTSFTDISECLKPQLERRYTYTEEPNVKATFGSRALGGFNMENLLQSLYVENRAGFFFTKFCENSGNKLWKNSVYFWFDLQAYHQLFYQDTLHPFKVCKQAQYLFATYIAPSATLDIGLDPEERKDIYLRIQPPFEDLFDTAEEYILLILLEPWTQMVMSDQVAYAQVELQEETRQLDSTYFRKLHALHKEAVLKKGEDTTGSVAGMLSLSEISKHMEYWSNVPEEYKNFTFNDLLNNKLEFEHFRQFLESHSSSMDLSCWVDIEQFRRILFKDQRQREAKSIYIKNKYLNKKYFFGPKSPASLNQQNQIMLLSGGWGSILHEQLEASVLVEIQKHVLNRLENVWLPLFLTSEEFASRQKVKIQMKDIADELLLQRPDRKIGVWKPVESKWLSSSCEIIAFRKALLNPITARQFQRFVALKGDLLENGVLFWQEVQKFKDLCHSHCDESIIQQKITTIINCFINSCIPPALQIDIPIEQAQKIIEHRKELGPYVFREAQMTIFGVLFKFWPQFCEFRKNLTDEKIMSVLERRQEYKQKKKLSETDEDKIGKAGLKQYTSTTGSLTKVPITSESFLGLHAYGRQPTWCYSKYIEALEQERILLKIQEEVERKMFTGASSFTNLLKLPTVSIMSLKNLSLHSIQRFL", "length": 1353, "header": "tr|A0A9J7H628-1|A0A9J7H628_CRIGR Isoform 1 of LOW QUALITY PROTEIN: regulator of G-protein signaling 22 isoform X2 OS=Cricetulus griseus OX=10029 GN=Rgs22 PE=4 SV=1 CANONICAL=A0A9J7H628-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H628-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H628/entry#A0A9J7H628-1", "sequence": { "sequence": 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"length": 1353, "header": "tr|A0A9J7H628-1|A0A9J7H628_CRIGR Isoform 1 of LOW QUALITY PROTEIN: regulator of G-protein signaling 22 isoform X2 OS=Cricetulus griseus OX=10029 GN=Rgs22 PE=4 SV=1 CANONICAL=A0A9J7H628-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 271, "start_aa": "Thr", "end_pos": 271, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr271", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 23% of CDS bases frameshifts :: corrected 2 indels internal stop codons :: corrected 1 genomic stop codons ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. 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This record is derived from a genomic sequence (NC_048601.1) annotated using gene prediction method: Gnomon. 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"https://www.ebi.ac.uk/interpro/entry/pfam/PF14646", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035304036", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304036", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H6E8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6E8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H6E8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6E8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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"tr|A0A9J7H6E8-1|A0A9J7H6E8_CRIGR Isoform 1 of MYCBP-associated protein isoform X2 OS=Cricetulus griseus OX=10029 GN=Mycbpap PE=4 SV=1 CANONICAL=A0A9J7H6E8-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H6E8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6E8/entry#A0A9J7H6E8-1", "sequence": { "sequence": 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"tr|A0A9J7H6E8-1|A0A9J7H6E8_CRIGR Isoform 1 of MYCBP-associated protein isoform X2 OS=Cricetulus griseus OX=10029 GN=Mycbpap PE=4 SV=1 CANONICAL=A0A9J7H6E8-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 42, "start_aa": "Thr", "end_pos": 42, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr42", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 42 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 394, "end_pos": 396 }, { "start_pos": 454, "end_pos": 456 }, { "start_pos": 478, "end_pos": 480 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", 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"field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", 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"uniprot_canonical_ac": "A0A9J7H6F8-1", "uniprot_ac": "A0A9J7H6F8", "uniprot_id": "A0A9J7H6F8_CRIGR", "mass": { "chemical_mass": 34119.0, "monoisotopic_mass": 34119.0 }, "refseq": { "ac": "XP_035303862", "name": "LOW QUALITY PROTEIN: asialoglycoprotein receptor 1 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303862" }, "gene_names": [ { "name": "LOC100763164", "type": "recommended", "evidence": [ { "id": "A0A9J7H6F8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6F8" } ] }, { "name": "LOC100763164", "type": "synonym", "evidence": [ { "id": "XP_035303862", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303862" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: asialoglycoprotein receptor 1 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035303862", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303862" }, { "id": "A0A9J7H6F8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6F8/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## internal stop codons :: corrected 1 genomic stop codon ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035303862", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303862" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H6F8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6F8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100763164", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6F8", "locus": {} } ], "crossref": [ { "id": "cd03590", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03590", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100763164", "url": "https://www.ncbi.nlm.nih.gov/gene/100763164", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001304", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001304", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016186", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016186", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016187", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016187", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018378", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018378", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050111", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050111", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100763164", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763164", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H6F8", "url": "https://www.orthodb.org/?gene=A0A9J7H6F8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22803", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22803", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00059", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00059", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03954", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03954", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035303862", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303862", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H6F8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6F8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H6F8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6F8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVSLGLLESLVCALPRTPGSTRGELLTPSLAGPPPSPSLLHRLCSGSRLLLLSLGLSLLLLVVVCVIASQNSQLRADLLALQQNFSNFSVSTEDQVKVLSTQGGSVGRKMKLLESQLEKQQQDLSEGHSNLMLHVKQLVYDLQSLSCQMAVLQGNGSERTCCPINWVEYEGSCYWFSSSGRSWTEADKYCQLENAHLAVVTSWDEQKFVQHHMGPTNTWIGLTDQNGPWKWVDGTDYEKNFKNWRPEQPDDWHGHGLGGGEDCAHFTSDGRWNDDVCRRPYRWVCEKKLGKPNXEQEPPPLNLFP", "length": 305, "header": "tr|A0A9J7H6F8-1|A0A9J7H6F8_CRIGR Isoform 1 of LOW QUALITY PROTEIN: asialoglycoprotein receptor 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100763164 PE=4 SV=1 CANONICAL=A0A9J7H6F8-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H6F8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6F8/entry#A0A9J7H6F8-1", "sequence": { "sequence": "MVSLGLLESLVCALPRTPGSTRGELLTPSLAGPPPSPSLLHRLCSGSRLLLLSLGLSLLLLVVVCVIASQNSQLRADLLALQQNFSNFSVSTEDQVKVLSTQGGSVGRKMKLLESQLEKQQQDLSEGHSNLMLHVKQLVYDLQSLSCQMAVLQGNGSERTCCPINWVEYEGSCYWFSSSGRSWTEADKYCQLENAHLAVVTSWDEQKFVQHHMGPTNTWIGLTDQNGPWKWVDGTDYEKNFKNWRPEQPDDWHGHGLGGGEDCAHFTSDGRWNDDVCRRPYRWVCEKKLGKPNXEQEPPPLNLFP", "length": 305, "header": "tr|A0A9J7H6F8-1|A0A9J7H6F8_CRIGR Isoform 1 of LOW QUALITY PROTEIN: asialoglycoprotein receptor 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100763164 PE=4 SV=1 CANONICAL=A0A9J7H6F8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035303464", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303464" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H6J2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6J2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Thap5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6J2", "locus": {} } ], "crossref": [ { "id": "103159821", "url": "https://www.ncbi.nlm.nih.gov/gene/103159821", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR052224", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052224", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:103159821", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103159821", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H6J2", "url": "https://www.orthodb.org/?gene=A0A9J7H6J2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46927", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46927", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46927:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46927:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_035303464", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035303464", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H6J2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6J2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H6J2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6J2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKXDSWSLHKYQFPCSDHFTPDXVDIRXGILYLKQTAILTVFCLPENCQGKDTKKKKKNIQSNILTLKQNTWEISVNQDLGVAGFCASSENPNSATVTLTTSNSEDIXLPINHLTNSYFINNYVETVSGQENSFPLAQLXELNTNNKSAIAIFIPTENLKVAVNSVLSDPKYAMEMEDTDLDSLNKDVDHNAEVLQTEHLYCRQNINKEHLWQVSNLHSKIQNPSLARLKALEAFISQLWQGNWLFEENVKIIGNCFTTYNVTVI", "length": 265, "header": "tr|A0A9J7H6J2-1|A0A9J7H6J2_CRIGR Isoform 1 of LOW QUALITY PROTEIN: THAP domain-containing protein 5 isoform X2 OS=Cricetulus griseus OX=10029 GN=Thap5 PE=4 SV=1 CANONICAL=A0A9J7H6J2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H6J2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6J2/entry#A0A9J7H6J2-1", "sequence": { "sequence": "MKXDSWSLHKYQFPCSDHFTPDXVDIRXGILYLKQTAILTVFCLPENCQGKDTKKKKKNIQSNILTLKQNTWEISVNQDLGVAGFCASSENPNSATVTLTTSNSEDIXLPINHLTNSYFINNYVETVSGQENSFPLAQLXELNTNNKSAIAIFIPTENLKVAVNSVLSDPKYAMEMEDTDLDSLNKDVDHNAEVLQTEHLYCRQNINKEHLWQVSNLHSKIQNPSLARLKALEAFISQLWQGNWLFEENVKIIGNCFTTYNVTVI", "length": 265, "header": "tr|A0A9J7H6J2-1|A0A9J7H6J2_CRIGR Isoform 1 of LOW QUALITY PROTEIN: THAP domain-containing protein 5 isoform X2 OS=Cricetulus griseus OX=10029 GN=Thap5 PE=4 SV=1 CANONICAL=A0A9J7H6J2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7H6K2-1", "uniprot_ac": "A0A9J7H6K2", "uniprot_id": "A0A9J7H6K2_CRIGR", "mass": { "chemical_mass": 99600.0, "monoisotopic_mass": 99600.0 }, "refseq": { "ac": "XP_035306030", "name": "MAP7 domain-containing protein 3 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306030" }, "gene_names": [ { "name": "Map7d3", "type": "recommended", "evidence": [ { "id": "A0A9J7H6K2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6K2" } ] }, { "name": "Map7d3", "type": "synonym", "evidence": [ { "id": "XP_035306030", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306030" } ] } ], "protein_names": [ { "name": "MAP7 domain-containing protein 3 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035306030", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306030" }, { "id": "A0A9J7H6K2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6K2/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048604.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035306030", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306030" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H6K2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6K2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Map7d3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6K2", "locus": {} } ], "crossref": [ { "id": "A0A9J7H6K2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H6K2", "database": "AlphaFoldDB", "categories": [] }, { "id": "100767940", "url": "https://www.ncbi.nlm.nih.gov/gene/100767940", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR051483", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051483", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100767940", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767940", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H6K2", "url": "https://www.orthodb.org/?gene=A0A9J7H6K2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15073", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15073", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15073:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15073:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_035306030", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306030", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H6K2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6K2", "database": 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isoform X2 OS=Cricetulus griseus OX=10029 GN=Map7d3 PE=3 SV=1 CANONICAL=A0A9J7H6K2-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 212, "start_aa": "Thr", "end_pos": 212, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr212", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H6K2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6K2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100767940", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767940", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "microtubule cytoskeleton", "id": "GO:0015630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015630", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H6K2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6K2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "microtubule cytoskeleton organization", "id": "GO:0000226", "url": 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Classification" ] }, { "id": "PTHR45712", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45712", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45712:SF19", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45712:SF19", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13855", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13855", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035306527", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306527", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H6L9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6L9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H6L9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6L9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEYRNESPIPDSDQSSTCSKPTPRLRKIDIGSVNLTSSSRKNSGKHMFGDSAADADSFNVIRLLRGSAVAVVLAPTVLLTMLSSAERGCPKGCRCEGKMVYCESQKLQEIPSSISAGCLGLSLRYNSLQKLKYNQFKGLNQLTWLYLDHNHISNIDENAFNGIRRLKELILSSNRISYFLNNTFRPVTNLRNLDLSYNQLHSLGSEQFRGLRKLLSLHLRSNSLRTIPVRIFQDCRNLELLDLGYNRIRSLARNVFAGMIRLKELHLEHNQFSKLNLALFPRLVSLQNLYMQWNKISVIGQTMSWTWSSLQRLDLSGNEIEAFSGPSVFQCVPNLQRLNLDSNKLTFIGQEILDSWISLNDISLAGNIWECSRNICSLVNWLKSFKGLRENTIICASPKELQGVNVIDAVKNYSICGKSTTERFDLARALPKPTFKPKLPRPKHESKPPLPPTVGATEPSPETDVDTEHISFHKIIAGSVALFLSVLVILLVMYVSWKRYPASMKQLQQRSLMRRHRKKKRQSLKQMTPGTQEFYVDYKPTNTETSEMLLNGTGPCTYSKSGSRECEIPLSMNVSTFLAYDQPTISYCGVHHELLSHKPFETNAQEDTMESHLETELDLSTITSAGRISDHKPQLA", "length": 636, "header": "tr|A0A9J7H6L9-1|A0A9J7H6L9_CRIGR Isoform 1 of Leucine-rich repeat transmembrane neuronal protein 3 isoform X2 OS=Cricetulus griseus OX=10029 GN=Lrrtm3 PE=3 SV=1 CANONICAL=A0A9J7H6L9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H6L9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6L9/entry#A0A9J7H6L9-1", "sequence": { "sequence": "MEYRNESPIPDSDQSSTCSKPTPRLRKIDIGSVNLTSSSRKNSGKHMFGDSAADADSFNVIRLLRGSAVAVVLAPTVLLTMLSSAERGCPKGCRCEGKMVYCESQKLQEIPSSISAGCLGLSLRYNSLQKLKYNQFKGLNQLTWLYLDHNHISNIDENAFNGIRRLKELILSSNRISYFLNNTFRPVTNLRNLDLSYNQLHSLGSEQFRGLRKLLSLHLRSNSLRTIPVRIFQDCRNLELLDLGYNRIRSLARNVFAGMIRLKELHLEHNQFSKLNLALFPRLVSLQNLYMQWNKISVIGQTMSWTWSSLQRLDLSGNEIEAFSGPSVFQCVPNLQRLNLDSNKLTFIGQEILDSWISLNDISLAGNIWECSRNICSLVNWLKSFKGLRENTIICASPKELQGVNVIDAVKNYSICGKSTTERFDLARALPKPTFKPKLPRPKHESKPPLPPTVGATEPSPETDVDTEHISFHKIIAGSVALFLSVLVILLVMYVSWKRYPASMKQLQQRSLMRRHRKKKRQSLKQMTPGTQEFYVDYKPTNTETSEMLLNGTGPCTYSKSGSRECEIPLSMNVSTFLAYDQPTISYCGVHHELLSHKPFETNAQEDTMESHLETELDLSTITSAGRISDHKPQLA", "length": 636, "header": "tr|A0A9J7H6L9-1|A0A9J7H6L9_CRIGR Isoform 1 of Leucine-rich repeat transmembrane neuronal protein 3 isoform X2 OS=Cricetulus griseus OX=10029 GN=Lrrtm3 PE=3 SV=1 CANONICAL=A0A9J7H6L9-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 453, "start_aa": "Thr", "end_pos": 453, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr453", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H6L9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6L9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H6L9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6L9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100759319", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759319", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H6L9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6L9" } ], "pmid": "" }, { "name": "postsynaptic membrane", "id": "GO:0045211", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045211", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H6L9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6L9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 181, "end_pos": 183, "annotation": "n_glycosylation_sequon" }, { "start_pos": 34, "end_pos": 36, "annotation": "n_glycosylation_sequon" }, { "start_pos": 412, "end_pos": 414, "annotation": "n_glycosylation_sequon" }, { "start_pos": 551, "end_pos": 553, "annotation": "n_glycosylation_sequon" }, { "start_pos": 573, "end_pos": 575, "annotation": "n_glycosylation_sequon" }, { "start_pos": 5, "end_pos": 7, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7H6L9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6L9" }, { "id": "SM00013", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00013" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "LRRNT", "eco_id": "ECO_0000259", "start_pos": 88, "end_pos": 120, "start_aa": "Gly", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 453 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 181, "end_pos": 183 }, { "start_pos": 34, "end_pos": 36 }, { "start_pos": 412, "end_pos": 414 }, { "start_pos": 551, "end_pos": 553 }, { "start_pos": 573, "end_pos": 575 }, { "start_pos": 5, "end_pos": 7 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7H6M8-1", "uniprot_ac": "A0A9J7H6M8", "uniprot_id": "A0A9J7H6M8_CRIGR", "mass": { "chemical_mass": 55803.0, "monoisotopic_mass": 55803.0 }, "refseq": { "ac": "XP_035293052", "name": "chromodomain Y-like protein", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035293052" }, "gene_names": [ { "name": "LOC100760645", "type": "recommended", "evidence": [ { "id": "A0A9J7H6M8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6M8" } ] }, { "name": "LOC100760645", "type": "synonym", "evidence": [ { "id": "XP_035293052", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035293052" } ] } ], "protein_names": [ { "name": "Chromodomain Y-like protein", "type": "synonym", "evidence": [ { "id": "A0A9J7H6M8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6M8/entry#names_and_taxonomy" } ] }, { "name": "chromodomain Y-like protein", "type": "synonym", "evidence": [ { "id": "XP_035293052", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035293052" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 47% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003615740.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035293052", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035293052" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H6M8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6M8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100760645", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6M8", "locus": {} } ], "crossref": [ { "id": "A0A9J7H6M8", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H6M8", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd06558", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06558", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100760645", "url": "https://www.ncbi.nlm.nih.gov/gene/100760645", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001753", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001753", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014748", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014748", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029045", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029045", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051053", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051053", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100760645", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760645", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H6M8", "url": "https://www.orthodb.org/?gene=A0A9J7H6M8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR43684", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43684", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43684:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43684:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00378", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00378", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035293052", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035293052", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H6M8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6M8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H6M8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6M8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTTSLAVARNSQSLSGSVATAMGKRLAGATKNQSSSGQVTTCLALARKSRSSGPMTMAMATCLTNARKSQSSSGLMTKARATGLAIGKKRPTTITTQLASPRKKNPSGPVTRAAAIRSAVANSGHSLSDPLTTNMAIGSAVTKMSQSMSDLVTAPTATHLVAAKKSHSVSGQMMAATAKQLAITRKRQSSSCPRTTSSTIATTGQSPPVDTSNMKQPVTETTNRETPVPEEMAKNRQLTGKKWPERQQRFSLRLTESSSRFKDIVVRKQEGFTHIFLSTKSSENNSLNLEVMNEVQNALNKAAEDDSKLVLLSAIGSVFCFGLDFSYFIQHLRGNKKRESTKMAGSIKNFVNTFIQFKKPIIAAVNGPAIGLGASILPLCDVVWANEKAWFQTPYTNFGQSPDGCSSFTFPKIMGEDSANEMLIGGQKLTAQEACNKGLVSQVFWPQTFNQEVMIRVKEMASCDAVVLQESKALLRFNTKTELEKANEKECTMLKDIWGSVAGIDAMLKYLQNKTGY", "length": 517, "header": "tr|A0A9J7H6M8-1|A0A9J7H6M8_CRIGR Isoform 1 of Chromodomain Y-like protein OS=Cricetulus griseus OX=10029 GN=LOC100760645 PE=4 SV=1 CANONICAL=A0A9J7H6M8-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H6M8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6M8/entry#A0A9J7H6M8-1", "sequence": { "sequence": "MTTSLAVARNSQSLSGSVATAMGKRLAGATKNQSSSGQVTTCLALARKSRSSGPMTMAMATCLTNARKSQSSSGLMTKARATGLAIGKKRPTTITTQLASPRKKNPSGPVTRAAAIRSAVANSGHSLSDPLTTNMAIGSAVTKMSQSMSDLVTAPTATHLVAAKKSHSVSGQMMAATAKQLAITRKRQSSSCPRTTSSTIATTGQSPPVDTSNMKQPVTETTNRETPVPEEMAKNRQLTGKKWPERQQRFSLRLTESSSRFKDIVVRKQEGFTHIFLSTKSSENNSLNLEVMNEVQNALNKAAEDDSKLVLLSAIGSVFCFGLDFSYFIQHLRGNKKRESTKMAGSIKNFVNTFIQFKKPIIAAVNGPAIGLGASILPLCDVVWANEKAWFQTPYTNFGQSPDGCSSFTFPKIMGEDSANEMLIGGQKLTAQEACNKGLVSQVFWPQTFNQEVMIRVKEMASCDAVVLQESKALLRFNTKTELEKANEKECTMLKDIWGSVAGIDAMLKYLQNKTGY", "length": 517, "header": "tr|A0A9J7H6M8-1|A0A9J7H6M8_CRIGR Isoform 1 of Chromodomain Y-like protein OS=Cricetulus griseus OX=10029 GN=LOC100760645 PE=4 SV=1 CANONICAL=A0A9J7H6M8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304002" }, { "id": "A0A9J7H6N3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6N3/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 7% of CDS bases frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035304002", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304002" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H6N3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6N3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Col23a1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6N3", "locus": {} } ], "crossref": [ { "id": "100768117", "url": "https://www.ncbi.nlm.nih.gov/gene/100768117", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008160", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008160", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050938", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050938", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100768117", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768117", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H6N3", "url": "https://www.orthodb.org/?gene=A0A9J7H6N3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR37456", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37456", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR37456:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37456:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01391", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01391", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035304002", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304002", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H6N3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6N3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H6N3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6N3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGAGERPSGGGGAQDPGAGCGARVLGALCLLLSVGSATACLLLGAQAAALHGRVEALEQEREILRRAGRPXSPDAWAETHLERLLREKLDGVAKLRTVREAPSECICPPGPPGRRGKPGRRGDPGPPGQSGRDGYPGPLGLDGKPGLPGPKGEKGAPGDFGPRGAQGQDGAAGPPGPPGPPGARGPPGDTGKDGPRGAQGPAGPKGEPGQDGEMGPKGPPGPKPQLLSSQGDDGMPSQPGLPGPPGPKGEPGDVGPQGENGVDGAPGLKGEPGHPGADGSAGPRGPPGLKGEQGDTVVIDYDGRILDALKGPPGPQGAPGPPGIPGAKGELGLPGAPGIDGEKGPKGSKGDPGEPGPAGPKGETGEMGLSGLPGADGPKGEKGESASDRLQESLAQIIVEPGPPGPPGPPGPMGLQGIQGPKGLDGAKGEKGALGERGPHGLPGPVGPPGLIGLPGTKGEKGRPGEPGLDGFPGPRGEKGDRSERGEKGDRGVPGRKGVKGQKGEPGPPGLDQPCPVGPDGLPVPGCWHKEAGRKADRLLWGNVFEDPWQGLAFLEMTKVKMPSSDPLG", "length": 569, "header": "tr|A0A9J7H6N3-1|A0A9J7H6N3_CRIGR Isoform 1 of LOW QUALITY PROTEIN: collagen alpha-1(XXIII) chain isoform X2 OS=Cricetulus griseus OX=10029 GN=Col23a1 PE=4 SV=1 CANONICAL=A0A9J7H6N3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H6N3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6N3/entry#A0A9J7H6N3-1", "sequence": { "sequence": "MGAGERPSGGGGAQDPGAGCGARVLGALCLLLSVGSATACLLLGAQAAALHGRVEALEQEREILRRAGRPXSPDAWAETHLERLLREKLDGVAKLRTVREAPSECICPPGPPGRRGKPGRRGDPGPPGQSGRDGYPGPLGLDGKPGLPGPKGEKGAPGDFGPRGAQGQDGAAGPPGPPGPPGARGPPGDTGKDGPRGAQGPAGPKGEPGQDGEMGPKGPPGPKPQLLSSQGDDGMPSQPGLPGPPGPKGEPGDVGPQGENGVDGAPGLKGEPGHPGADGSAGPRGPPGLKGEQGDTVVIDYDGRILDALKGPPGPQGAPGPPGIPGAKGELGLPGAPGIDGEKGPKGSKGDPGEPGPAGPKGETGEMGLSGLPGADGPKGEKGESASDRLQESLAQIIVEPGPPGPPGPPGPMGLQGIQGPKGLDGAKGEKGALGERGPHGLPGPVGPPGLIGLPGTKGEKGRPGEPGLDGFPGPRGEKGDRSERGEKGDRGVPGRKGVKGQKGEPGPPGLDQPCPVGPDGLPVPGCWHKEAGRKADRLLWGNVFEDPWQGLAFLEMTKVKMPSSDPLG", "length": 569, "header": "tr|A0A9J7H6N3-1|A0A9J7H6N3_CRIGR Isoform 1 of LOW QUALITY PROTEIN: collagen alpha-1(XXIII) chain isoform X2 OS=Cricetulus griseus OX=10029 GN=Col23a1 PE=4 SV=1 CANONICAL=A0A9J7H6N3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035306561", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306561" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H6P3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6P3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Lpar3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6P3", "locus": {} } ], "crossref": [ { "id": "A0A9J7H6P3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H6P3", "database": "AlphaFoldDB", "categories": [] }, { "id": "100759265", "url": "https://www.ncbi.nlm.nih.gov/gene/100759265", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004065", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004065", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005385", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005385", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100759265", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759265", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H6P3", "url": "https://www.orthodb.org/?gene=A0A9J7H6P3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22750", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22750", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00001", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00001", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035306561", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306561", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H6P3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6P3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H6P3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6P3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNECHYDKRMDFFYNRSNSDTADEWSGTKLVIVLCVGTFFCLFIFFSNSLVIAAVITNRKFHFPFYYLLANLAAADFFAGIAYVFLMFNTGPVSKTLTVNRWFLRQGLLDTSLTASLANLLVIAVERHVSIMRMRVHSNLTKKRVTLLILLVWAIAIFMGAVPTLGWNCLCNISACSSLAPIYSRSYLIFWTVSNLLAFFIMVVVYVRIYMYVKRKTNVLSPHTSGSISRRRAPMKLMKTVMTVLETLERLRRRKWCLKAPDHFAMTVEVGVVETRIRGGASLEGMACRRPGQ", "length": 293, "header": "tr|A0A9J7H6P3-1|A0A9J7H6P3_CRIGR Isoform 1 of Lysophosphatidic acid receptor 3 OS=Cricetulus griseus OX=10029 GN=Lpar3 PE=3 SV=1 CANONICAL=A0A9J7H6P3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H6P3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6P3/entry#A0A9J7H6P3-1", "sequence": { "sequence": "MNECHYDKRMDFFYNRSNSDTADEWSGTKLVIVLCVGTFFCLFIFFSNSLVIAAVITNRKFHFPFYYLLANLAAADFFAGIAYVFLMFNTGPVSKTLTVNRWFLRQGLLDTSLTASLANLLVIAVERHVSIMRMRVHSNLTKKRVTLLILLVWAIAIFMGAVPTLGWNCLCNISACSSLAPIYSRSYLIFWTVSNLLAFFIMVVVYVRIYMYVKRKTNVLSPHTSGSISRRRAPMKLMKTVMTVLETLERLRRRKWCLKAPDHFAMTVEVGVVETRIRGGASLEGMACRRPGQ", "length": 293, "header": "tr|A0A9J7H6P3-1|A0A9J7H6P3_CRIGR Isoform 1 of Lysophosphatidic acid receptor 3 OS=Cricetulus griseus OX=10029 GN=Lpar3 PE=3 SV=1 CANONICAL=A0A9J7H6P3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"https://www.ebi.ac.uk/QuickGO/term/GO:0070915", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H6P3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6P3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 139, "end_pos": 141, "annotation": "n_glycosylation_sequon" }, { "start_pos": 15, "end_pos": 17, "annotation": "n_glycosylation_sequon" }, { "start_pos": 172, "end_pos": 174, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7H6P3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6P3" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 1 profile", "eco_id": "ECO_0000259", "start_pos": 47, "end_pos": 245, "start_aa": "Ser", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 139, "end_pos": 141 }, { "start_pos": 15, "end_pos": 17 }, { "start_pos": 172, "end_pos": 174 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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} ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7H6Q6-1", "uniprot_ac": "A0A9J7H6Q6", "uniprot_id": "A0A9J7H6Q6_CRIGR", "mass": { "chemical_mass": 69353.0, "monoisotopic_mass": 69353.0 }, "refseq": { "ac": "XP_035304920", "name": "interleukin-17 receptor E isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304920" }, "gene_names": [ { "name": "Il17re", "type": "recommended", "evidence": [ { "id": "A0A9J7H6Q6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6Q6" } ] }, { "name": "Il17re", "type": "synonym", "evidence": [ { "id": "XP_035304920", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304920" } ] } ], "protein_names": [ { "name": "Interleukin-17 receptor E", "type": "recommended", "evidence": [ { "id": "A0A9J7H6Q6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6Q6/entry#names_and_taxonomy" } ] }, { "name": "interleukin-17 receptor E isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035304920", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304920" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 5% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048601.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035304920", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304920" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H6Q6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6Q6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Il17re", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6Q6", "locus": {} } ], "crossref": [ { "id": "A0A9J7H6Q6", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H6Q6", "database": "AlphaFoldDB", "categories": [] }, { "id": "100751042", "url": "https://www.ncbi.nlm.nih.gov/gene/100751042", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013568", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013568", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039465", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039465", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100751042", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751042", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H6Q6", "url": "https://www.orthodb.org/?gene=A0A9J7H6Q6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15583", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15583", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15583:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15583:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08357", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08357", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF15037", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15037", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035304920", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304920", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H6Q6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6Q6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H6Q6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6Q6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIGTKSSGSMHLLQFPSNHTSLISFPHWALYLQDKNSAGLQWNWFPLLVKKSKSPPKSEFYWRRRRPASSQRKLLSSLSLSQEDHSISNPFPAISHGGPHCKRTQPLDTGGVEHFPRAGSQKRGGPEFSFDLLPEAQAIRVTIPPGPEASVRLCYQWALECEDMSSPFDTQKIVSGGHTVDLPYEFLLPCMCIEASYLQEDTVRCKKCPFQSWPEAYGSDFWKSVHFTDYSQNNQMVMAVTLRCPLKLEASLCQKQDPLLPCETLPNATAQESEGWYVLENVDLHPHLCFKFSFENSSHVECPHQSGSLPSWSVSMGTQGQRLTLHFSSTTYASFSAAWSNPGSGLDALMPPVYSISQTQGSVPVTFDLIIPFLNPGSCILVWRSDVQFASKHLLCPDVSHRHLGLLILALLGLTTLLGVVLVLLCRRLLPGPGQARPILLLHAADSEAQRRLVGALAELLRTALGGGRDVIVDLWEGTHVARIGPLPWFWAARERVVREQGTVLLLWNCAGPSPAGSGDPHPASIRTLLCAAPRRLLLAYFSRLCAKGDIPQPLRALPRYRLLRDLPRLLRALDARPATLATSWSHTGAKQCLQRRLELCHRLELAAKIDYQTSTDHPCGSSCL", "length": 625, "header": "tr|A0A9J7H6Q6-1|A0A9J7H6Q6_CRIGR Isoform 1 of Interleukin-17 receptor E OS=Cricetulus griseus OX=10029 GN=Il17re PE=4 SV=1 CANONICAL=A0A9J7H6Q6-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H6Q6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6Q6/entry#A0A9J7H6Q6-1", "sequence": { "sequence": "MIGTKSSGSMHLLQFPSNHTSLISFPHWALYLQDKNSAGLQWNWFPLLVKKSKSPPKSEFYWRRRRPASSQRKLLSSLSLSQEDHSISNPFPAISHGGPHCKRTQPLDTGGVEHFPRAGSQKRGGPEFSFDLLPEAQAIRVTIPPGPEASVRLCYQWALECEDMSSPFDTQKIVSGGHTVDLPYEFLLPCMCIEASYLQEDTVRCKKCPFQSWPEAYGSDFWKSVHFTDYSQNNQMVMAVTLRCPLKLEASLCQKQDPLLPCETLPNATAQESEGWYVLENVDLHPHLCFKFSFENSSHVECPHQSGSLPSWSVSMGTQGQRLTLHFSSTTYASFSAAWSNPGSGLDALMPPVYSISQTQGSVPVTFDLIIPFLNPGSCILVWRSDVQFASKHLLCPDVSHRHLGLLILALLGLTTLLGVVLVLLCRRLLPGPGQARPILLLHAADSEAQRRLVGALAELLRTALGGGRDVIVDLWEGTHVARIGPLPWFWAARERVVREQGTVLLLWNCAGPSPAGSGDPHPASIRTLLCAAPRRLLLAYFSRLCAKGDIPQPLRALPRYRLLRDLPRLLRALDARPATLATSWSHTGAKQCLQRRLELCHRLELAAKIDYQTSTDHPCGSSCL", "length": 625, "header": "tr|A0A9J7H6Q6-1|A0A9J7H6Q6_CRIGR Isoform 1 of Interleukin-17 receptor E OS=Cricetulus griseus OX=10029 GN=Il17re PE=4 SV=1 CANONICAL=A0A9J7H6Q6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. 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Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035304978", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304978" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H6U2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6U2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC118239314", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6U2", "locus": {} } ], "crossref": [ { "id": "A0A9J7H6U2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H6U2", "database": "AlphaFoldDB", "categories": [] }, { "id": "118239314", "url": "https://www.ncbi.nlm.nih.gov/gene/118239314", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050717", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050717", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:118239314", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118239314", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H6U2", "url": "https://www.orthodb.org/?gene=A0A9J7H6U2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14196", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14196", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14196:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14196:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035304978", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304978", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H6U2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6U2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H6U2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6U2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLENYSNLVSVGLSESKPELVSCLEENKEPWMVNLQAHQRIHTGEKLYNCKVCGKSFNQSSYLQVHQRIHTGEKPYNCKVCGKSFTNGTNLQVHQRIHTGEKPYNCKVCGKFFTNGSNLQVHQRIHTGEKPYNCKVCGKSFTKSSTLQVHQRIHTGEKPYNCKVCGKSFTNGSDLQIHQRIHTGEKPYNCKLCGKSFAKGSHLQVHQRKHTGEKPYNCKLCGKSFINGSHLQVHQRIHTGEKPYNCKVCGMSFTKSSTLQVHQRIHTGEKPYKCSDCGKFFKQSSNLQVHQRIHTGEKPYKCSLCGKFFSQNTHLQIHQRIHTGEKPYNCKVCGKSFTNSSTLQVHQRIHTGDKPYNCKVCGKSFTRGSHLQIHQRVHTGEKRYKCSHCRKFFSQITHLQVHQRIHTVQKC", "length": 411, "header": "tr|A0A9J7H6U2-1|A0A9J7H6U2_CRIGR Isoform 1 of Zinc finger protein 345-like OS=Cricetulus griseus OX=10029 GN=LOC118239314 PE=3 SV=1 CANONICAL=A0A9J7H6U2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H6U2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6U2/entry#A0A9J7H6U2-1", "sequence": { "sequence": "MLENYSNLVSVGLSESKPELVSCLEENKEPWMVNLQAHQRIHTGEKLYNCKVCGKSFNQSSYLQVHQRIHTGEKPYNCKVCGKSFTNGTNLQVHQRIHTGEKPYNCKVCGKFFTNGSNLQVHQRIHTGEKPYNCKVCGKSFTKSSTLQVHQRIHTGEKPYNCKVCGKSFTNGSDLQIHQRIHTGEKPYNCKLCGKSFAKGSHLQVHQRKHTGEKPYNCKLCGKSFINGSHLQVHQRIHTGEKPYNCKVCGMSFTKSSTLQVHQRIHTGEKPYKCSDCGKFFKQSSNLQVHQRIHTGEKPYKCSLCGKFFSQNTHLQIHQRIHTGEKPYNCKVCGKSFTNSSTLQVHQRIHTGDKPYNCKVCGKSFTRGSHLQIHQRVHTGEKRYKCSHCRKFFSQITHLQVHQRIHTVQKC", "length": 411, "header": "tr|A0A9J7H6U2-1|A0A9J7H6U2_CRIGR Isoform 1 of Zinc finger protein 345-like OS=Cricetulus griseus OX=10029 GN=LOC118239314 PE=3 SV=1 CANONICAL=A0A9J7H6U2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"length": 1004, "header": "tr|A0A9J7H6U7-1|A0A9J7H6U7_CRIGR Isoform 1 of NACHT, LRR and PYD domains-containing protein 9B isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100770646 PE=3 SV=1 CANONICAL=A0A9J7H6U7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K9N5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6U7/entry#A0A9J7K9N5-1", "sequence": { "sequence": "MEEISGYDLTLCLQKLSKADFMSFKVLLRKAPEEFELDPIPWTEIKMASRKGLVMLLNKNYPGKVWDIALSLFQKVKRKDLFAMTEALRRDKGTPYKETMKTLFNFIWNFESGIYVPYHEFEIITEMQYSSLQVVFEPQSQPVTAVILGNKGEGKTTFLRRAMLDWASGDLWQNRFQYVFFFSLMSLNDITELSLAQLLLSKLSESSESLEDILSDPRRILFILEGFDYLKFDLELRTNLCNDWRKTVPTQIVLSSLLQKVMLPESSLLLELGNLSVPKIYPLLQKPRDITLGGYTDEAIKYYCMSFMYSYTEGSAIFNYLQTMQPLLTLCKNPYKRWMVCSTLKCQRKRGENMNIDYKPDSALYASFMVNSFRAEYANRPSRQNRDQLKPLCTLAVEGMWKLVFVFKPEDLYRNGISESGQIVWLKMNFLNTRGDHFVFYHPALQLYFAALFYFLRQDEDRPHPVIGSLSQLLREIYAHDQNQWLLTGIFVFGIATEKVAAILEPHFGSIPSEEMRQEILKCFRNLSRGECGEKLRSPQSLFDSLVDNQEEGFIRQVMDLFEEMTIDISSADALSVATTCLLKSQRLKNLHLHIQHRVFSEKYKPEDGDLEAFKHEKMCSFVTNFGHGVLFHTLLQLPHLKSLNLYGTNLSNDVVENMCCVLKCSTCRVEELLLGKCNLSSEACGIIATSLIFCKVKHLSLVENPLKNKGVMLLCETLKRPSCDLETLMLSYCALTFIACGHLYEALLHNKYLSLLDLSSNFLEDTGVNILCKALKDPMCPLQELWLSGCYLTSDCCEEISAVLTHNQKLKTLKLGNNNIQDTGVRQLCEALSNPECKLRCLGLDMCEFTTGSCADLALVLTTCKTLTMLNLDRMTFDRDGLKLLCEALNHKDCNLKVLGLDKSAFCEESQKILQEVEKKNTLDILHYPWIKEESKKRGVRLVWNSEN", "length": 949, "header": "tr|A0A9J7K9N5-1|A0A9J7H6U7_CRIGR Computationally mapped isoform of NACHT, LRR and PYD domains-containing protein 9B isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100770646 PE=3 SV=1 CANONICAL=A0A9J7H6U7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"Genome Annotation" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100758022", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758022", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H6X5", "url": "https://www.orthodb.org/?gene=A0A9J7H6X5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24381", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24381", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24381:SF393", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24381:SF393", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035305030", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305030", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H6X5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6X5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H6X5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6X5-1", "database": "UniProtKB", 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CANONICAL=A0A9J7H6X5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H6X5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6X5/entry#A0A9J7H6X5-1", "sequence": { "sequence": "MCSLFLKEKLKEEKQEEIAISPANMSQGVLTFRDVAVDFSQEEWECLDSAQRALCIDVMLENYSNLVFVEEYCKCDPVHQHVKTEKESCQCNELGKVLHDPSTCALYRTSETTENSNNYTCSNDSDASVDSSNPDRHESMHTGEEPCRSKECEKSSNLCSNITQDERVYTAKKECRQEGDDSLSSAARLLQQTIYTEENAHQCGKCKKCFRTDSDLADHERIHPGIKPCQCNISGKSFTQNSACITHQSLHTVDNPNTCMEGDKSFTWNSQCRRQQSIHTEKKHHRYMKCDKFFAQDSHPRRCQRVQTGERPYKCTDCHKSFTQDSNLRKHQRVHTGERPYSCKQCDKSFTWNSQLKRHQSDHTEEKPYKCIECDESFTKVLHFIRHQRVHTGERRYSCQECDKSFTFCSGLRRHQRIHTGERPYSCEECEKSFNCSSGLKRHQRVHTGERPYSCMECDKSFIQVSLLRSHQRVHTGERPYSCLECDKSFTGCSDLKRHQRLHTGERPYKCIQCDKSFTWDSDLRTHLRIHTGEKPYKCMQCDKSFTWNTQLRRHKSSHXGEXPYTCIECEKSFTKMLHFIKHQKVHSGKRPCSCKECDKSFTRYAGTQSERREDGEERRSGVKSACSLSLLGFLYGGSRALQTRVRRTRRVRGDLRPRDPQCPRSRGGLGKSAVSSAVAGTAARRPWKLPGQRSCGAGNREGGAGVRAVSLLLIRKPAPKFCCACLSLSVNFPS", "length": 735, "header": "tr|A0A9J7H6X5-1|A0A9J7H6X5_CRIGR Isoform 1 of LOW QUALITY PROTEIN: zinc finger protein 54-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100758022 PE=4 SV=1 CANONICAL=A0A9J7H6X5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H6X5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6X5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100758022", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758022", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H6X5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6X5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ 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"A0A9J7H6Y5-1", "uniprot_ac": "A0A9J7H6Y5", "uniprot_id": "A0A9J7H6Y5_CRIGR", "mass": { "chemical_mass": 75801.0, "monoisotopic_mass": 75801.0 }, "refseq": { "ac": "XP_035305046", "name": "leukocyte immunoglobulin-like receptor subfamily B member 3 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305046" }, "gene_names": [ { "name": "LOC107977009", "type": "recommended", "evidence": [ { "id": "A0A9J7H6Y5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6Y5" } ] }, { "name": "LOC107977009", "type": "synonym", "evidence": [ { "id": "XP_035305046", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305046" } ] } ], "protein_names": [ { "name": "Leukocyte immunoglobulin-like receptor subfamily B member 3 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7H6Y5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6Y5/entry#names_and_taxonomy" } ] }, { "name": "leukocyte immunoglobulin-like receptor subfamily B member 3 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035305046", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305046" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 6% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035305046", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305046" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H6Y5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6Y5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC107977009", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H6Y5", "locus": {} } ], "crossref": [ { "id": "A0A9J7H6Y5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H6Y5", "database": "AlphaFoldDB", "categories": [] }, { "id": "107977009", "url": "https://www.ncbi.nlm.nih.gov/gene/107977009", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013151", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013151", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050412", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050412", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:107977009", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:107977009", "database": "KEGG Pathway", 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ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. 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"annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 100% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035305025", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305025" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H798", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H798" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113839112", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H798", "locus": {} } ], "crossref": [ { "id": "A0A9J7H798", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H798", "database": "AlphaFoldDB", "categories": [] }, { "id": "113839112", "url": "https://www.ncbi.nlm.nih.gov/gene/113839112", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR051870", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051870", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113839112", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113839112", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H798", "url": "https://www.orthodb.org/?gene=A0A9J7H798", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15141", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15141", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15141:SF76", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15141:SF76", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_035305025", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305025", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H798", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H798", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H798-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H798-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTQSYFYRLYIKHALEALKKLRERLCMETEPRQLYKTLKKLSSLSILCKTLEEIGFRQTIKRLKKQQLLVPFAKEFAARWSERSKFGSQPEPGTQQDFAFHRSPKAEIPSNSPEDKPQNPDSSGHGEDGSQVLEVSSSSPQPRTNQSMDTSSKQIATHRPKAEPAGRRTHRGSFWDNQLDTESLVRVDNPQGTVGESWTLEGLKTLSSKPEPGPAKQPLSPLRAKRPGPWTPEDYPPGSFEAWLKYDCNSSSSALPPHKRKKKSTQKPEAHTPRAKMPPDGPENSDLHTDQEAATWTCRKTFKTSAYSGSRPARHLPHISNIGRQAKPQSTGENHGQPVLEEDPLWSEHEEDCPRTQIKTANQTVTQTETQKLLRMQESLQLTTLCASIQSSQAKNHHLHQTKLIDFDAQARSPSQHADSGPRGEVSPENVHRLPEKSGHGYLPKASCQLLGVSSNDSHKTQAKKPAPLMVKAFKDYKNRWARK", "length": 484, "header": "tr|A0A9J7H798-1|A0A9J7H798_CRIGR Isoform 1 of Elongin-A3-like OS=Cricetulus griseus OX=10029 GN=LOC113839112 PE=4 SV=1 CANONICAL=A0A9J7H798-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H798-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H798/entry#A0A9J7H798-1", "sequence": { "sequence": "MTQSYFYRLYIKHALEALKKLRERLCMETEPRQLYKTLKKLSSLSILCKTLEEIGFRQTIKRLKKQQLLVPFAKEFAARWSERSKFGSQPEPGTQQDFAFHRSPKAEIPSNSPEDKPQNPDSSGHGEDGSQVLEVSSSSPQPRTNQSMDTSSKQIATHRPKAEPAGRRTHRGSFWDNQLDTESLVRVDNPQGTVGESWTLEGLKTLSSKPEPGPAKQPLSPLRAKRPGPWTPEDYPPGSFEAWLKYDCNSSSSALPPHKRKKKSTQKPEAHTPRAKMPPDGPENSDLHTDQEAATWTCRKTFKTSAYSGSRPARHLPHISNIGRQAKPQSTGENHGQPVLEEDPLWSEHEEDCPRTQIKTANQTVTQTETQKLLRMQESLQLTTLCASIQSSQAKNHHLHQTKLIDFDAQARSPSQHADSGPRGEVSPENVHRLPEKSGHGYLPKASCQLLGVSSNDSHKTQAKKPAPLMVKAFKDYKNRWARK", "length": 484, "header": "tr|A0A9J7H798-1|A0A9J7H798_CRIGR Isoform 1 of Elongin-A3-like OS=Cricetulus griseus OX=10029 GN=LOC113839112 PE=4 SV=1 CANONICAL=A0A9J7H798-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"https://www.ebi.ac.uk/QuickGO/term/GO:0002764", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H7B1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7B1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 60, "end_pos": 62, "annotation": "n_glycosylation_sequon" }, { "start_pos": 71, "end_pos": 73, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7H7B1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7B1" }, { "id": "PS50835", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50835" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Ig-like", "eco_id": "ECO_0000259", "start_pos": 43, "end_pos": 112, "start_aa": "Pro", "end_aa": "Cys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 60, "end_pos": 62 }, { "start_pos": 71, "end_pos": 73 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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{ "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7H7C1-1", "uniprot_ac": "A0A9J7H7C1", "uniprot_id": "A0A9J7H7C1_CRIGR", "mass": { "chemical_mass": 34307.0, "monoisotopic_mass": 34307.0 }, "refseq": { "ac": "XP_035305056", "name": "leukocyte-associated immunoglobulin-like receptor 1 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305056" }, "gene_names": [ { "name": "Lair1", "type": "recommended", "evidence": [ { "id": "A0A9J7H7C1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7C1" } ] }, { "name": "Lair1", "type": "synonym", "evidence": [ { "id": "XP_035305056", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305056" } ] } ], "protein_names": [ { "name": "Leukocyte-associated immunoglobulin-like receptor 1 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7H7C1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7C1/entry#names_and_taxonomy" } ] }, { "name": "leukocyte-associated immunoglobulin-like receptor 1 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035305056", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305056" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 36% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035305056", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305056" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H7C1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7C1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Lair1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7C1", "locus": {} } ], "crossref": [ { "id": "A0A9J7H7C1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H7C1", "database": "AlphaFoldDB", "categories": [] }, { "id": "100773832", "url": "https://www.ncbi.nlm.nih.gov/gene/100773832", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050412", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050412", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100773832", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773832", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H7C1", "url": "https://www.orthodb.org/?gene=A0A9J7H7C1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11738", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11738", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11738:SF129", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11738:SF129", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_035305056", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305056", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H7C1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7C1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H7C1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7C1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSLCLATVLALVLCLGQTDDTVKEEACSNGLQVLQKETSSMMAESPICQSEARALDENPGPEGSSRSFGRAKHGLVREEGDTRLGSQIRRINPGHHGYDVFRLERNNMKVKDEENTLHSMTEARFHLGPVDESFAGRYSCIYEKGSNWSPRSEILELMVTREDVTQAPDPGPAVTSDTSWLKTNGIYILIGVSVVFLLCLLLLLLFCFHSHRQKKQGLPNSKNQQQNPQKRLSLVTNGLESTPDIVTDDRLLEDRRTETRVPVSGSLQEVTYAQLDHHALTQRTAEAVTPWSTDAKPESSTYAAIIRR", "length": 308, "header": "tr|A0A9J7H7C1-1|A0A9J7H7C1_CRIGR Isoform 1 of Leukocyte-associated immunoglobulin-like receptor 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Lair1 PE=4 SV=1 CANONICAL=A0A9J7H7C1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H7C1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7C1/entry#A0A9J7H7C1-1", "sequence": { "sequence": "MSLCLATVLALVLCLGQTDDTVKEEACSNGLQVLQKETSSMMAESPICQSEARALDENPGPEGSSRSFGRAKHGLVREEGDTRLGSQIRRINPGHHGYDVFRLERNNMKVKDEENTLHSMTEARFHLGPVDESFAGRYSCIYEKGSNWSPRSEILELMVTREDVTQAPDPGPAVTSDTSWLKTNGIYILIGVSVVFLLCLLLLLLFCFHSHRQKKQGLPNSKNQQQNPQKRLSLVTNGLESTPDIVTDDRLLEDRRTETRVPVSGSLQEVTYAQLDHHALTQRTAEAVTPWSTDAKPESSTYAAIIRR", "length": 308, "header": "tr|A0A9J7H7C1-1|A0A9J7H7C1_CRIGR Isoform 1 of Leukocyte-associated immunoglobulin-like receptor 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Lair1 PE=4 SV=1 CANONICAL=A0A9J7H7C1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048601.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035304527", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304527" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H7G1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7G1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Efcab12", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7G1", "locus": {} } ], "crossref": [ { "id": "A0A9J7H7G1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H7G1", "database": "AlphaFoldDB", "categories": [] }, { "id": "100772176", "url": "https://www.ncbi.nlm.nih.gov/gene/100772176", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042847", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042847", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100772176", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772176", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H7G1", "url": "https://www.orthodb.org/?gene=A0A9J7H7G1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47225", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47225", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47225:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47225:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_035304527", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304527", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H7G1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7G1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H7G1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7G1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEDSKRRTFPSYTWMDDDMDEAPSQGPVFNPELVTAHCFRQFKKDFHLPRCRRRIIIVPGTKDQVPAHPTLPPKAPPPPIPTYKTLDFTDIQEQPVDRKVWLSQRAKLRRQLESLGDVKTWLENKPHITPSEAKVLLMIRQEQIARRATYITGKPKVKAPRQVRRPLPMLLLPKPSALADLYSYLRSQKIRILDLFSKVDRGENQRISREEFIMALKTIGVPLKNLELEDIIIYLGTLGNQNAITTDALTNTYKQWLLAQQRSTVSTAREYYKLATKKASLKHTPQKQQAGPARQPYKMDLLTVPEVDTKKEARPMTEEDMEEVGKRYRERRRQYKLCLPSIQYMERCRLVRSGKKPFDDHCLPSTISGEMEELLNKARRDVFLVYLQCWELCQTYGIPLTEDILMRALLYPGDRIISLRKEVRPIRQPGGYYTDENILHSLTGFGIQGFHKLGMKTTDKKTESKKFKKMHFQEFEQFTRKLKAKRLGSPSRTHPNYFWPGHLLDKLRLFLPTVAKDNSLAIFSRVEHKRLACPSVTHHSKEWWPMKDWAYMVYGNYDANKVYSIN", "length": 566, "header": "tr|A0A9J7H7G1-1|A0A9J7H7G1_CRIGR Isoform 1 of EF-hand calcium-binding domain-containing protein 12 OS=Cricetulus griseus OX=10029 GN=Efcab12 PE=4 SV=1 CANONICAL=A0A9J7H7G1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H7G1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7G1/entry#A0A9J7H7G1-1", "sequence": { "sequence": "MEDSKRRTFPSYTWMDDDMDEAPSQGPVFNPELVTAHCFRQFKKDFHLPRCRRRIIIVPGTKDQVPAHPTLPPKAPPPPIPTYKTLDFTDIQEQPVDRKVWLSQRAKLRRQLESLGDVKTWLENKPHITPSEAKVLLMIRQEQIARRATYITGKPKVKAPRQVRRPLPMLLLPKPSALADLYSYLRSQKIRILDLFSKVDRGENQRISREEFIMALKTIGVPLKNLELEDIIIYLGTLGNQNAITTDALTNTYKQWLLAQQRSTVSTAREYYKLATKKASLKHTPQKQQAGPARQPYKMDLLTVPEVDTKKEARPMTEEDMEEVGKRYRERRRQYKLCLPSIQYMERCRLVRSGKKPFDDHCLPSTISGEMEELLNKARRDVFLVYLQCWELCQTYGIPLTEDILMRALLYPGDRIISLRKEVRPIRQPGGYYTDENILHSLTGFGIQGFHKLGMKTTDKKTESKKFKKMHFQEFEQFTRKLKAKRLGSPSRTHPNYFWPGHLLDKLRLFLPTVAKDNSLAIFSRVEHKRLACPSVTHHSKEWWPMKDWAYMVYGNYDANKVYSIN", "length": 566, "header": "tr|A0A9J7H7G1-1|A0A9J7H7G1_CRIGR Isoform 1 of EF-hand calcium-binding domain-containing protein 12 OS=Cricetulus griseus OX=10029 GN=Efcab12 PE=4 SV=1 CANONICAL=A0A9J7H7G1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H7G1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7G1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H7G1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7G1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100772176", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772176", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H7G1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7G1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7H7G1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7G1" }, { "id": "PS50222", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50222" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EF-hand", "eco_id": "ECO_0000259", "start_pos": 187, "end_pos": 222, "start_aa": "Ser", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7H7G6-1", "uniprot_ac": "A0A9J7H7G6", "uniprot_id": "A0A9J7H7G6_CRIGR", "mass": { "chemical_mass": 282965.0, "monoisotopic_mass": 282965.0 }, "refseq": { "ac": "XP_035306526", "name": "ankyrin-3-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306526" }, "gene_names": [ { "name": "LOC118239462", "type": "recommended", "evidence": [ { "id": "A0A9J7H7G6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7G6" } ] }, { "name": "LOC118239462", "type": "synonym", "evidence": [ { "id": "XP_035306526", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306526" } ] } ], "protein_names": [ { "name": "Ankyrin-3-like", "type": "synonym", "evidence": [ { "id": "A0A9J7H7G6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7G6/entry#names_and_taxonomy" } ] }, { "name": "ankyrin-3-like", "type": "synonym", "evidence": [ { "id": "XP_035306526", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306526" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035306526", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306526" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H7G6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7G6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC118239462", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7G6", "locus": {} } ], "crossref": [ { "id": "118239462", "url": "https://www.ncbi.nlm.nih.gov/gene/118239462", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:118239462", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118239462", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H7G6", "url": "https://www.orthodb.org/?gene=A0A9J7H7G6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "XP_035306526", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306526", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H7G6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7G6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H7G6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7G6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSQAPEETVERSSGTARSLPTTYSYKPFFSTRPYQSWTTAPVTVPGPAKSGFASLSSSSSNTPSASPLKSIWSVSTPSPIKSTLGTSTTSSVKSISDVASPIRSFRTISSPIKTVVSPSPYNIQVASGTLGRAPTVTTEATPLKGLAPTSTFSSRTSPVTTAGSLLERSSITMTPPASPKSNITMYSSSLPFKSIITSAAPLISSPLKSVVSPTKSAADVISSAKATMASSLSSPLKQMSGHAEVALVNGSVSPLKYPSSSALINGCKATATLQDKISTATNAVSSVVSAATDTVEKALSTTTAMPFSPLRSYVSAAPSAFQSLRTPSASALYTSLGSSISATTSSVTSSIITVPVYSVVNVLSEPALKKLPDSNSLTKSAAALLSPIKTLTTETRPQPHFNRTSSPAKSSLFLTPSALKLSAPSSLSSSQEILKDVAEMKEDLMRMTAILQTDVPEEKPFQPDLPKEGRIDDEEPFKIVEKVKEDLVKVSEILKKDVCVDSKGPPKSPKSDKGHSPEDDWIEFSSEEIQEARQAAASHTPSPPEKVHGKANLSRVIDYLTNDIGSSSLTNLKCKFEDAKKDGEERQKRILKPAMALQEHKLKMPPASMRPSTSEKELCKMADSFFGSDAILESPDDFSQHDQDKSPLSDSGFETRSEKTPSAPQSAESTGPKPLFHEVPIPPVITETRTEVVHVIRSYEPSTGDIPQSQPEDPMSPKPSATFMELEPKPTTSSIKEKVKAFQMKASSEEEDHSRVLSKGMRVKEETHITTTTRMVYHSPPGSECASERIEETMSVHDIMKAFQSGRDPSKELAGLFEHKSAMSPDVPKSAAETSAQHAEKDNQMKPKLERIIEVHIEKGNQAEPTEVIIRETKKHPEKEVPGCQKDLSRGSINLKDFLPEKHDAFPCPEEQGQQEEEELAAEESLPSYLESSRVNTPVSQEEDSRPSSAQLLSDDSYKTLKLLSQHSVEYHDDELSDLRGESYRFAEKMLLSEKLDVSHSDTEESVTDPVGPPSSQLQRSDKRSRDKVATAPQKEILSKIYKDVSENGIGRVSKDEHFDKVTVLHYAGNVSGPKHAMWMHLSEDRLDRGREKLIYEDRVDRTVKEAEEKLTEVSQFFRDKTEKLNDELQSPEKKPRPKNGKECSSQSSTSSSPERVLTELLASNDEWVKARQRGQDGQGVPQAEDRKTHSGSSSPEKRVPSQQSEDGQPTEEAKRTVIAQGRGPEGPQSGFQLKQSKLSSIRLKFEQGTRAKSKDPSQEEKNLEGPSRIPVKKTQENKLPTHPGFAREKQQKAVDLSEERGPVQNDVTIVKVEHTKNNDIVVNESGPDDAKRHRTEMLSKAMPEFFPEQQAEEDSACPMTSDLATKGPWDRKVFRTWESSGASNNEAQREKLSHVLVHDIRESHTGRPDESENADPKNEFMCVTEREHKLLTNGSLSEIKEMSVKSPSKKVLYREYIVKEGDRPPSSALHHLPRKSESSVGSHIPIRVADERKMLPSNIPDGFCEQSTFPKHELSQKVSRSSVSKEIVENQHFNSIDDEKVTYSEISKVSKQSYVGLCPVLDETETSPTRSPDSLEFSPGKDSPSSDVFDHGSMEGLEKLAPLAQTEGGKEIKTLPVYVSFVQVGKQYEKELQQGGVKKIISQECKTVQEARGTFYTARQQKQPPSPQGSPEDDTLEQVSFLDSSGKSPLTPETPSSEEVSYEFTSKTPDSLIAFIPGQPSPIPEVSEESESEEPKSAPLKQVTVERETDRDVSRDSTQRPKCNRVAYIEFPPPPPLDADQMESDKKHQYLPEREVDMIEVNLQDECDKYQLAEPVIRVQPPSPVPPGADASDSSDDDESMYQPVPVKKYTFKLKEVDEGQKDMAKSKTAATKASNQKEVESNGRESESGLDSPQNETAQNGNNDQSVTECSIATTAEFSHDTDATEIDSLDGYDLQDEDDGLTESDSKLPSQTVDTKKDVWTEGILKPADRSFSQSKLEVIEEEGKVGLDEEKPSSSKSSSSDRTPEKSDPKSGAQFFTLEGRHPDRSVFPDTYFSYKVDEEFATPFKTVATKGLDFDPWPNNRGDNEVFDGKSREDDTKPFGLAVDDRSPATTPDTTPARTPTDESTPTSEPNPFPFHEGKMFEMTRSGAIDMSKRDFVEERLQFFQIGEHTPEGKSGAQGEGDSSMVTDTPQPQSGDTSVDNNLERDVEAPTVEPNPSILTIGECQEGAACSGSLEKSAAAANTSKVDPKSRTPIKMGISASTMTMKKEGSGEVTDKIEAVVTSCQGLENEMMTVISSAPNSQVGVRSQEKHDFQKDNFNNNNNLDSSTIQTDNTTNHVVLTGCAAPTRTTEKANPVKGSGKSPGTQGHCIRDSRKEPIGVRRKSKLPIKATAPKDVFPSNHKPDSKAGKLRQVGPSEKNRTLPISSCVDAKSRIPVKNTYRENLVSVRKACATQKRGQPEKGKAKPPPSKLPVKVRSTCVTVTTTNTTTTTTTKTTTVKVRESQRKAVCKHPIEYFKGISGETLKLVDRLTEEDKKMQSELSDEEESTSRNTSLSETSRGGQPSVTTKSARDKRTEATPLKAKSGKAGSRRTGENEGSQVS", "length": 2586, "header": "tr|A0A9J7H7G6-1|A0A9J7H7G6_CRIGR Isoform 1 of Ankyrin-3-like OS=Cricetulus griseus OX=10029 GN=LOC118239462 PE=4 SV=1 CANONICAL=A0A9J7H7G6-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H7G6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7G6/entry#A0A9J7H7G6-1", "sequence": { "sequence": "MSQAPEETVERSSGTARSLPTTYSYKPFFSTRPYQSWTTAPVTVPGPAKSGFASLSSSSSNTPSASPLKSIWSVSTPSPIKSTLGTSTTSSVKSISDVASPIRSFRTISSPIKTVVSPSPYNIQVASGTLGRAPTVTTEATPLKGLAPTSTFSSRTSPVTTAGSLLERSSITMTPPASPKSNITMYSSSLPFKSIITSAAPLISSPLKSVVSPTKSAADVISSAKATMASSLSSPLKQMSGHAEVALVNGSVSPLKYPSSSALINGCKATATLQDKISTATNAVSSVVSAATDTVEKALSTTTAMPFSPLRSYVSAAPSAFQSLRTPSASALYTSLGSSISATTSSVTSSIITVPVYSVVNVLSEPALKKLPDSNSLTKSAAALLSPIKTLTTETRPQPHFNRTSSPAKSSLFLTPSALKLSAPSSLSSSQEILKDVAEMKEDLMRMTAILQTDVPEEKPFQPDLPKEGRIDDEEPFKIVEKVKEDLVKVSEILKKDVCVDSKGPPKSPKSDKGHSPEDDWIEFSSEEIQEARQAAASHTPSPPEKVHGKANLSRVIDYLTNDIGSSSLTNLKCKFEDAKKDGEERQKRILKPAMALQEHKLKMPPASMRPSTSEKELCKMADSFFGSDAILESPDDFSQHDQDKSPLSDSGFETRSEKTPSAPQSAESTGPKPLFHEVPIPPVITETRTEVVHVIRSYEPSTGDIPQSQPEDPMSPKPSATFMELEPKPTTSSIKEKVKAFQMKASSEEEDHSRVLSKGMRVKEETHITTTTRMVYHSPPGSECASERIEETMSVHDIMKAFQSGRDPSKELAGLFEHKSAMSPDVPKSAAETSAQHAEKDNQMKPKLERIIEVHIEKGNQAEPTEVIIRETKKHPEKEVPGCQKDLSRGSINLKDFLPEKHDAFPCPEEQGQQEEEELAAEESLPSYLESSRVNTPVSQEEDSRPSSAQLLSDDSYKTLKLLSQHSVEYHDDELSDLRGESYRFAEKMLLSEKLDVSHSDTEESVTDPVGPPSSQLQRSDKRSRDKVATAPQKEILSKIYKDVSENGIGRVSKDEHFDKVTVLHYAGNVSGPKHAMWMHLSEDRLDRGREKLIYEDRVDRTVKEAEEKLTEVSQFFRDKTEKLNDELQSPEKKPRPKNGKECSSQSSTSSSPERVLTELLASNDEWVKARQRGQDGQGVPQAEDRKTHSGSSSPEKRVPSQQSEDGQPTEEAKRTVIAQGRGPEGPQSGFQLKQSKLSSIRLKFEQGTRAKSKDPSQEEKNLEGPSRIPVKKTQENKLPTHPGFAREKQQKAVDLSEERGPVQNDVTIVKVEHTKNNDIVVNESGPDDAKRHRTEMLSKAMPEFFPEQQAEEDSACPMTSDLATKGPWDRKVFRTWESSGASNNEAQREKLSHVLVHDIRESHTGRPDESENADPKNEFMCVTEREHKLLTNGSLSEIKEMSVKSPSKKVLYREYIVKEGDRPPSSALHHLPRKSESSVGSHIPIRVADERKMLPSNIPDGFCEQSTFPKHELSQKVSRSSVSKEIVENQHFNSIDDEKVTYSEISKVSKQSYVGLCPVLDETETSPTRSPDSLEFSPGKDSPSSDVFDHGSMEGLEKLAPLAQTEGGKEIKTLPVYVSFVQVGKQYEKELQQGGVKKIISQECKTVQEARGTFYTARQQKQPPSPQGSPEDDTLEQVSFLDSSGKSPLTPETPSSEEVSYEFTSKTPDSLIAFIPGQPSPIPEVSEESESEEPKSAPLKQVTVERETDRDVSRDSTQRPKCNRVAYIEFPPPPPLDADQMESDKKHQYLPEREVDMIEVNLQDECDKYQLAEPVIRVQPPSPVPPGADASDSSDDDESMYQPVPVKKYTFKLKEVDEGQKDMAKSKTAATKASNQKEVESNGRESESGLDSPQNETAQNGNNDQSVTECSIATTAEFSHDTDATEIDSLDGYDLQDEDDGLTESDSKLPSQTVDTKKDVWTEGILKPADRSFSQSKLEVIEEEGKVGLDEEKPSSSKSSSSDRTPEKSDPKSGAQFFTLEGRHPDRSVFPDTYFSYKVDEEFATPFKTVATKGLDFDPWPNNRGDNEVFDGKSREDDTKPFGLAVDDRSPATTPDTTPARTPTDESTPTSEPNPFPFHEGKMFEMTRSGAIDMSKRDFVEERLQFFQIGEHTPEGKSGAQGEGDSSMVTDTPQPQSGDTSVDNNLERDVEAPTVEPNPSILTIGECQEGAACSGSLEKSAAAANTSKVDPKSRTPIKMGISASTMTMKKEGSGEVTDKIEAVVTSCQGLENEMMTVISSAPNSQVGVRSQEKHDFQKDNFNNNNNLDSSTIQTDNTTNHVVLTGCAAPTRTTEKANPVKGSGKSPGTQGHCIRDSRKEPIGVRRKSKLPIKATAPKDVFPSNHKPDSKAGKLRQVGPSEKNRTLPISSCVDAKSRIPVKNTYRENLVSVRKACATQKRGQPEKGKAKPPPSKLPVKVRSTCVTVTTTNTTTTTTTKTTTVKVRESQRKAVCKHPIEYFKGISGETLKLVDRLTEEDKKMQSELSDEEESTSRNTSLSETSRGGQPSVTTKSARDKRTEATPLKAKSGKAGSRRTGENEGSQVS", "length": 2586, "header": "tr|A0A9J7H7G6-1|A0A9J7H7G6_CRIGR Isoform 1 of Ankyrin-3-like OS=Cricetulus griseus OX=10029 GN=LOC118239462 PE=4 SV=1 CANONICAL=A0A9J7H7G6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"annotation": "n_glycosylation_sequon" }, { "start_pos": 2318, "end_pos": 2320, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2404, "end_pos": 2406, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2471, "end_pos": 2473, "annotation": "n_glycosylation_sequon" }, { "start_pos": 249, "end_pos": 251, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2536, "end_pos": 2538, "annotation": "n_glycosylation_sequon" }, { "start_pos": 402, "end_pos": 404, "annotation": "n_glycosylation_sequon" }, { "start_pos": 552, "end_pos": 554, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1070, "end_pos": 1072 }, { "start_pos": 1324, "end_pos": 1326 }, { "start_pos": 1434, "end_pos": 1436 }, { "start_pos": 182, "end_pos": 184 }, { "start_pos": 1897, "end_pos": 1899 }, { "start_pos": 2227, "end_pos": 2229 }, { "start_pos": 2318, "end_pos": 2320 }, { "start_pos": 2404, "end_pos": 2406 }, { "start_pos": 2471, "end_pos": 2473 }, { "start_pos": 249, "end_pos": 251 }, { "start_pos": 2536, "end_pos": 2538 }, { "start_pos": 402, "end_pos": 404 }, { "start_pos": 552, "end_pos": 554 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", 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"sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7H7H1-1", "uniprot_ac": "A0A9J7H7H1", "uniprot_id": "A0A9J7H7H1_CRIGR", "mass": { "chemical_mass": 19983.0, "monoisotopic_mass": 19983.0 }, "refseq": { "ac": "XP_035304007", "name": "protein RoBo-1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304007" }, "gene_names": [ { "name": "LOC100773648", "type": "recommended", "evidence": [ { "id": "A0A9J7H7H1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7H1" } ] }, { "name": "LOC100773648", "type": "synonym", "evidence": [ { "id": "XP_035304007", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304007" } ] } ], "protein_names": [ { "name": "Protein RoBo-1", "type": "synonym", "evidence": [ { "id": "A0A9J7H7H1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7H1/entry#names_and_taxonomy" } ] }, { "name": "protein RoBo-1", "type": "synonym", "evidence": [ { "id": "XP_035304007", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304007" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 19% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035304007", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304007" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H7H1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7H1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100773648", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7H1", "locus": {} } ], "crossref": [ { "id": "A0A9J7H7H1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H7H1", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd23572", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd23572", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100773648", "url": "https://www.ncbi.nlm.nih.gov/gene/100773648", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR045860", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045860", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050918", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050918", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100773648", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773648", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H7H1", "url": "https://www.orthodb.org/?gene=A0A9J7H7H1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR20914", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20914", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR20914:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR20914:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_035304007", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304007", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H7H1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7H1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H7H1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7H1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTWSSNLKSLLTVFVFTILAVPVSFVATFTDRIFKNKGCTSGTCSELVLSATLGDQRKFSFENHCCTSNECNKDDIKLSSSSSLNGVECTACYSEKAQSCSSVTTLKCTGKETKCIEVTGTSSIATGSSLTLYGKGCATENACDLQQNVFNGIQIKTTCISPVSNNGNPTLKLISSAPIVLLLLKVLL", "length": 188, "header": "tr|A0A9J7H7H1-1|A0A9J7H7H1_CRIGR Isoform 1 of Protein RoBo-1 OS=Cricetulus griseus OX=10029 GN=LOC100773648 PE=4 SV=1 CANONICAL=A0A9J7H7H1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H7H1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7H1/entry#A0A9J7H7H1-1", "sequence": { "sequence": "MTWSSNLKSLLTVFVFTILAVPVSFVATFTDRIFKNKGCTSGTCSELVLSATLGDQRKFSFENHCCTSNECNKDDIKLSSSSSLNGVECTACYSEKAQSCSSVTTLKCTGKETKCIEVTGTSSIATGSSLTLYGKGCATENACDLQQNVFNGIQIKTTCISPVSNNGNPTLKLISSAPIVLLLLKVLL", "length": 188, "header": "tr|A0A9J7H7H1-1|A0A9J7H7H1_CRIGR Isoform 1 of Protein RoBo-1 OS=Cricetulus griseus OX=10029 GN=LOC100773648 PE=4 SV=1 CANONICAL=A0A9J7H7H1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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{ "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7H7H7-1", "uniprot_ac": "A0A9J7H7H7", "uniprot_id": "A0A9J7H7H7_CRIGR", "mass": { "chemical_mass": 178806.0, "monoisotopic_mass": 178806.0 }, "refseq": { "ac": "XP_035306542", "name": "glutamate-rich protein 3 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306542" }, "gene_names": [ { "name": "Erich3", "type": "recommended", "evidence": [ { "id": "A0A9J7H7H7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7H7" } ] }, { "name": "Erich3", "type": "synonym", "evidence": [ { "id": "XP_035306542", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306542" } ] } ], "protein_names": [ { "name": "Glutamate-rich protein 3 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7H7H7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7H7/entry#names_and_taxonomy" } ] }, { "name": "glutamate-rich protein 3 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035306542", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306542" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 34% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035306542", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306542" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H7H7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7H7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Erich3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7H7", "locus": {} } ], "crossref": [ { "id": "100770258", "url": "https://www.ncbi.nlm.nih.gov/gene/100770258", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR027962", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027962", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048257", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048257", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100770258", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770258", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H7H7", "url": "https://www.orthodb.org/?gene=A0A9J7H7H7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23034", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23034", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23034:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23034:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15257", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15257", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035306542", "url": 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"length": 1617, "header": "tr|A0A9J7H7H7-1|A0A9J7H7H7_CRIGR Isoform 1 of Glutamate-rich protein 3 isoform X2 OS=Cricetulus griseus OX=10029 GN=Erich3 PE=4 SV=1 CANONICAL=A0A9J7H7H7-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 15, "start_aa": "Thr", "end_pos": 15, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr15", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": 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CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048604.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035306088", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306088" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H7U2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7U2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100765911", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7U2", "locus": {} } ], "crossref": [ { "id": "100765911", "url": "https://www.ncbi.nlm.nih.gov/gene/100765911", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001806", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001806", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005225", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005225", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050227", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050227", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100765911", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765911", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H7U2", "url": "https://www.orthodb.org/?gene=A0A9J7H7U2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47977", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47977", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00071", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00071", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035306088", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306088", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "19669", "url": "https://www.rhea-db.org/rhea/19669", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H7U2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7U2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H7U2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7U2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSMNPEYDYLFNLLLIGXSGLGKSCLLLRFADDTYTGSYISTIGVDFKIRTIELDGKTIKLQIRDPAGQERFRTISSSYYRRARGIIVVHDVTDQESFNDVKQWLHANENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNTTNVEQSFMTMAAGIKK", "length": 169, "header": "tr|A0A9J7H7U2-1|A0A9J7H7U2_CRIGR Isoform 1 of small monomeric GTPase OS=Cricetulus griseus OX=10029 GN=LOC100765911 PE=4 SV=1 CANONICAL=A0A9J7H7U2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H7U2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7U2/entry#A0A9J7H7U2-1", "sequence": { "sequence": "MSSMNPEYDYLFNLLLIGXSGLGKSCLLLRFADDTYTGSYISTIGVDFKIRTIELDGKTIKLQIRDPAGQERFRTISSSYYRRARGIIVVHDVTDQESFNDVKQWLHANENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNTTNVEQSFMTMAAGIKK", "length": 169, "header": "tr|A0A9J7H7U2-1|A0A9J7H7U2_CRIGR Isoform 1 of small monomeric GTPase OS=Cricetulus griseus OX=10029 GN=LOC100765911 PE=4 SV=1 CANONICAL=A0A9J7H7U2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [ "enzyme" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035304230", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304230" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H7W3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7W3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC118239226", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7W3", "locus": {} } ], "crossref": [ { "id": "118239226", "url": "https://www.ncbi.nlm.nih.gov/gene/118239226", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:118239226", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118239226", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_035304230", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304230", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H7W3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7W3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H7W3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7W3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQRSPFLGPLLMPPLALPVPLTSLQALSGSHQFPASSLAYSTPPQVLSVTRWPLRPCQAVQQPHPVFSIPRQAICLRVRHPDPPFRLASAQPIRHSLLLEQHHVASRLGGCQLPARPSARFPAAALPVARPGPAACAPSSWSALSLLLSLRSPRGLLPPCPGFATSRASADAARSSGSAAPRGGGASLRQPKRQTQQCALTSRGAESSRARPSTLKWTVAPGLCQRPSWGPGSLKLRI", "length": 238, "header": "tr|A0A9J7H7W3-1|A0A9J7H7W3_CRIGR Isoform 1 of Uncharacterized protein LOC118239226 OS=Cricetulus griseus OX=10029 GN=LOC118239226 PE=4 SV=1 CANONICAL=A0A9J7H7W3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H7W3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7W3/entry#A0A9J7H7W3-1", "sequence": { "sequence": "MQRSPFLGPLLMPPLALPVPLTSLQALSGSHQFPASSLAYSTPPQVLSVTRWPLRPCQAVQQPHPVFSIPRQAICLRVRHPDPPFRLASAQPIRHSLLLEQHHVASRLGGCQLPARPSARFPAAALPVARPGPAACAPSSWSALSLLLSLRSPRGLLPPCPGFATSRASADAARSSGSAAPRGGGASLRQPKRQTQQCALTSRGAESSRARPSTLKWTVAPGLCQRPSWGPGSLKLRI", "length": 238, "header": "tr|A0A9J7H7W3-1|A0A9J7H7W3_CRIGR Isoform 1 of Uncharacterized protein LOC118239226 OS=Cricetulus griseus OX=10029 GN=LOC118239226 PE=4 SV=1 CANONICAL=A0A9J7H7W3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H7W3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7W3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H7W3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7W3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:118239226", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118239226", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7H7X0-1", "uniprot_ac": "A0A9J7H7X0", "uniprot_id": "A0A9J7H7X0_CRIGR", "mass": { "chemical_mass": 303016.0, "monoisotopic_mass": 303016.0 }, "refseq": { "ac": "XP_035305380", "name": "platelet binding protein GspB-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305380" }, "gene_names": [ { "name": "LOC118239348", "type": "recommended", "evidence": [ { "id": "A0A9J7H7X0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7X0" } ] }, { "name": "LOC118239348", "type": "synonym", "evidence": [ { "id": "XP_035305380", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305380" } ] } ], "protein_names": [ { "name": "Platelet binding protein GspB-like", "type": "synonym", "evidence": [ { "id": "A0A9J7H7X0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7X0/entry#names_and_taxonomy" } ] }, { "name": "platelet binding protein GspB-like", "type": "synonym", "evidence": [ { "id": "XP_035305380", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305380" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 100% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035305380", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305380" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H7X0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7X0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC118239348", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7X0", "locus": {} } ], "crossref": [ { "id": "cd00086", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00086", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "118239348", "url": "https://www.ncbi.nlm.nih.gov/gene/118239348", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001356", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001356", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009057", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009057", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:118239348", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118239348", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H7X0", "url": "https://www.orthodb.org/?gene=A0A9J7H7X0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PF00046", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00046", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035305380", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305380", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H7X0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7X0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H7X0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7X0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFPSKEERQDLASRLQLKDTVVKMWFRNQRDKLQTQQQNHHGSSSLEESRWVKVVKGVSSNQASREMGASSHQDKRQRKESSNQGPREMAASSNQPPREMDASSNQAKRVRKASSNHILREKGPPSNLELRGMGVSSNQGPREMIALFNQATREMAASSNQGTREMDALFNQALRDMGASSNHAKRLRNATSKQPLRKMDASPNQPPRQMGASSNQAPREMGPSSNQGPDGMIALFNQSLREMAASSNQPPRQRGASSNQEQREMGPSSNQRPDGMIALFNQSPREMAASSNQPPREMDASSNHAKRVRKASSNHIPREKGPPSNLALREMGVSSNQGPREMIALFNQAPREMAASSNHAKRLRNAPSNQPLRKMDASSNQPPRQMGASSNQPPREMDASSTQAKRARKASSNQGPREMGASSNQTLREMAASSNQPPREMDASSTQAKRARKASSNQGPREMGASSNQALREMGASSNHAKRQRNAPSNQPLKKNDASSNQTPRQMGVSSNQALTEIAASSKQGPREMGPSSNQPPSEIDASSSQALREMEALLDQALRVMGESSNQASREMGASSNQIPRVMVTSSNQANSEMGALFNQDSGKMGASFKQVPREMNTLSEQASREIRASPNQAKTVRKVSSNQGPREMGPSSNQPPSEMDASSSQALREMEALLDQALRVMGESSNQASREMDVSSNQIPRVMVTSSNQAKSEMGASFKQEPREMNTLSEQASREIWASPNQAKTVRKVSSNQGPRKMGPSSNQPPSEMDASSSQALREMEALLDQALRVMGESSNQASREMDASSNQIPRVMVTSSNQAKSEMGALFNQDSGKMGASFKQVPREMNTLSEQASREIRASPNQAKTVRKVSSNQGPREMGPSSNQPPSEMDASSSQALREMEALLDQALRVMGESFNQASREMDVSSNQIPRVMVTSSNQAKSEMGASFKQVPREMNTLSEQASREIRSSPNQAKTLRKVSSNQSPREMGPSFNKAPREIRPKVSSSQGPSELCPSSNQPPSEIDASSSQALKEMEALLDQALREMGETSNHALRQMGALSNQSSRERDALSKLASKEMDASSNQKPTEMGTASNQPAREMDALSKQASREMAPSSNQPPGEICASPNQAKTVRKVSSIQGPREMGPSSNQPPSEMDASSSQALREMEALLDQALKEMGETSNQASREMDASSNKALRDVDASSNQASRDTDTSSNQAPREKGASSNQGKTVRKQSSNDAKGVKRVSSKQAMKERDASSNQTPREMGPSSNQTPKDMGASSNQAPREMGAPSNQDKTVRGVASMQEKSLKDNEVFAPKADSAQLLSTRGSDSNQESWKTIGAKQPEESGASVRKYVEHSELLDIYQSNLGLVQPPWASMPFNIDTLVNMYELPGDNDPQEFDKFSTQGQTRHDLPYTTILSPEQIGVLQEAFDSNMFPSKEERQDLASRLQLKDTVVKMWFRNQRDKLQTQQQNHHGSSSLVESRRVKVVKGVSSNQASREMGASSNQAKRLRKESSNQGPREIDASSSQGQGGMGPSSNQGPEEMIALFSQSLREIAASSNQPPREMDASSNQAKRVRKASSNNAPKEKGPPSNLAPREMGASSNQGLREMIALFNQAPREMAASSKQGTREMDALFNHALREIGASSNHAKRQRNAPSNQPPRQMGASSNQSPREMDATFNQAKRVKKASSNHAPREKIPPSNQAPREIAASSNQGPREMDALFNQALREMGASSNHAKRLRNATSSQPLRNMDALSNQPPRQMGASSNQLPGEMDASSRQAKRVKKASPSKPPIVMSPSSNQPPREMQASSNQDKTARKPSSNQAPREIAASSNQDKTARKPSSNQVPREMGASSGQAPREMIASSNQDKTARKPSSNHDKGMKKVSSKQTMREMDASSNQKPRVMATSSNQAKSEMGALFNQDSGKMGASRNQAKIVSKVSSNQAPKEMGPSSNQPLSEMDASSSQALREMEALLDQALRVMGESSNQASREMDASSNQIPRVMVTSSNQAKSEMGALFNQDSGKMGASFKQVPREMNTLSEQASREIRASPNQAKTVRKVSSNQGPREMGPSSNQPLSEMDASSSQALREMEALLDQALRVMGESSNQASREMDASSNQIPRVMVTSSNQAKSEMGALFNQDSGKMGASFKQVPREMNTLSEQASREIRASPNQAKTVRKVSSNQGSREMGPSSNQPPSEMDASSSQALREMEALLDQALRVMGESSNQASREMDASSNQIPRVMVTSSNQAKSEMGALFNQDSGKMGASFKQVPRKMNTLSEQASREIQASPNQAKTVRKVSSNQAPKEMGPSSNQPPSEMDASSSQALREMEALLDQALRVMGESSNQASREMDASSNQIPRVMVTSSNQAKSEMGALFNQDSGKMGASFKQVPREMNTLSEQASREIRASSNQAKTVRKVSSNQAPREMGPSFNKAPREIRPKVSSSQRLRELSPSSNKPLSKIDASSSQALKEMEALLDQALKKMGESSNQAKRVINVSSKQPPSEMDALPKQALKLMGVSPNQPSREIDALCKLASKEKDASSNQPAREMDALSKQASREMCASSNQPPREMCASSNQPPSEMDASSSQALREMEALLDQALKEMGETSNQASREMGASSNKAPRDVDASSNQASRETDASSNQVPREMGEPSNQDKTVRGVPSIQEKSLKDNEVFAPKADSAQLLSTRGSDSNQESWKKIGAKQTEESGASVRKYVEHSELLDIYQSSLDQVQAPWASMPFDIDTLVKMYELPGDNDPQEFDKYLYPGCLD", "length": 2784, "header": "tr|A0A9J7H7X0-1|A0A9J7H7X0_CRIGR Isoform 1 of Platelet binding protein GspB-like OS=Cricetulus griseus OX=10029 GN=LOC118239348 PE=4 SV=1 CANONICAL=A0A9J7H7X0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H7X0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7X0/entry#A0A9J7H7X0-1", "sequence": { "sequence": 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"length": 2784, "header": "tr|A0A9J7H7X0-1|A0A9J7H7X0_CRIGR Isoform 1 of Platelet binding protein GspB-like OS=Cricetulus griseus OX=10029 GN=LOC118239348 PE=4 SV=1 CANONICAL=A0A9J7H7X0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048600.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035304245", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304245" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H7X4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7X4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Slc26a1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7X4", "locus": {} } ], "crossref": [ { "id": "A0A9J7H7X4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H7X4", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd07042", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07042", "database": "CDD", "categories": [ "Protein Classification" ] 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"sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7H830-1", "uniprot_ac": "A0A9J7H830", "uniprot_id": "A0A9J7H830_CRIGR", "mass": { "chemical_mass": 41027.0, "monoisotopic_mass": 41027.0 }, "refseq": { "ac": "XP_035305649", "name": "uncharacterized protein LOC100774212 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305649" }, "gene_names": [ { "name": "LOC100774212", "type": "recommended", "evidence": [ { "id": "A0A9J7H830", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H830" } ] }, { "name": "LOC100774212", "type": "synonym", "evidence": [ { "id": "XP_035305649", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305649" } ] } ], "protein_names": [ { "name": "Uncharacterized protein LOC100774212 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7H830", "database": "UniProtKB", "url": 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This record is derived from a genomic sequence (NC_048604.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035305649", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305649" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H830", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H830" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100774212", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H830", "locus": {} } ], "crossref": [ { "id": "A0A9J7H830", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H830", "database": "AlphaFoldDB", "categories": [] }, { "id": "100774212", "url": "https://www.ncbi.nlm.nih.gov/gene/100774212", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006187", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006187", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100774212", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774212", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H830", "url": "https://www.orthodb.org/?gene=A0A9J7H830", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12002", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12002", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_035305649", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305649", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H830", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H830", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H830-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H830-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRDSMMGTHGQPKCNDSRHNPLQKLYFCRYANGKNHIFKLTGLLTSLSVLVFEIVIVNSQSWHLWEFDNTDVQFVYFGLWEAHYPREKKRIFKLTGLLTSLTVLVFEIVIVNSQNWRLWEFDNTVVQYTNRKKRIFKLTGLLTSLTVLVFEIVIVNSQNWRLWEFDNTDVQFVYFGLWEAHYPREFNVSGTIVQMLVHTPIDSTWIISPEYHYAQNLITWAILIKPIDLVFTLMAIMISYMRDPFIEMQIYCYKVSGLFLFFSSFFTFFSVSCNCMIDLYGQTTLDFPPGFPVKKEDMISKHFTVIFPLGIFTAAMSFFGLTMILTEVCSLKLQSQLKTQRTYISDNPVA", "length": 350, "header": "tr|A0A9J7H830-1|A0A9J7H830_CRIGR Isoform 1 of Uncharacterized protein LOC100774212 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100774212 PE=3 SV=1 CANONICAL=A0A9J7H830-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H830-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H830/entry#A0A9J7H830-1", "sequence": { "sequence": "MRDSMMGTHGQPKCNDSRHNPLQKLYFCRYANGKNHIFKLTGLLTSLSVLVFEIVIVNSQSWHLWEFDNTDVQFVYFGLWEAHYPREKKRIFKLTGLLTSLTVLVFEIVIVNSQNWRLWEFDNTVVQYTNRKKRIFKLTGLLTSLTVLVFEIVIVNSQNWRLWEFDNTDVQFVYFGLWEAHYPREFNVSGTIVQMLVHTPIDSTWIISPEYHYAQNLITWAILIKPIDLVFTLMAIMISYMRDPFIEMQIYCYKVSGLFLFFSSFFTFFSVSCNCMIDLYGQTTLDFPPGFPVKKEDMISKHFTVIFPLGIFTAAMSFFGLTMILTEVCSLKLQSQLKTQRTYISDNPVA", "length": 350, "header": "tr|A0A9J7H830-1|A0A9J7H830_CRIGR Isoform 1 of Uncharacterized protein LOC100774212 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100774212 PE=3 SV=1 CANONICAL=A0A9J7H830-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048601.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035304912", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035304912" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H832", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H832" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "A2ml1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H832", "locus": {} } ], "crossref": [ { "id": "cd02897", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02897", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100762067", "url": "https://www.ncbi.nlm.nih.gov/gene/100762067", "database": "GeneID", "categories": [ "Genome 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"length": 1456, "header": "tr|A0A9J7H832-1|A0A9J7H832_CRIGR Isoform 1 of Alpha-2-macroglobulin-like protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=A2ml1 PE=3 SV=1 CANONICAL=A0A9J7H832-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 202, "start_aa": "Thr", "end_pos": 202, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr202", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H832", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H832" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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"http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23327", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23327:SF41", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23327:SF41", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00097", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00097", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02190", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02190", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13432", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13432", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13923", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13923", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035305727", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305727", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H866", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H866", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H866-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H866-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDSFQSAQMLSLPAELGSNNLELAELAEPEERAASAAGGTSGAHPQASPEGSEPPPTRALEQTQNPGTSTPPPECKVLLTQADALASRGRLREALEVYRQLSERQQLVAEQLEQLVRCLAESVPQKETVAPAPSDQSGTSSCCKVAMEEAGEAAAVAPEVWDGFKCRKCHGFLSDPVSLWCGHTFCKLCLERGRAADRRCALCGVKLSALMVASGRARGPRRAGQPAPVQLRVNVVLSGLLGKLFPGPARASQLRHEGNRLYRERQVEAALLKYNEAVRLAPNDHLLYSNRSQIYFTLESHEDALHDAEIACKLRPMGFKAHFRKAQALATLGKVEEALREFLYCVSLDGNNKKARAEAQRLLFSFFSPSVSGDSQEHFPDILKLLATHPRLKEHVESMATEGTSHNLPKLSQGNPEIPHCSNQEEAAAGGDGSSLEKSAHVKVGSQENNVRDHEEEKQDAASVRTGKCQEKKRNRCQIDEIHEDTDVPNKVSKQDLPADQVAKQDPSIPLASFDASDLECSLCMRLFYEPVTTPCGHTFCLKCLERCLDHNAKCPLCKDVLLQCLPSRKYSKNVIMEELIAKFLPEELKERRRLHEEEMEELSNLNKNVPIFVCTMAYPTVPCPLHIFEPCYRLMIRRCIETGTKQFGMCLGDPVKGFAEYGCILEIRNVQFFADGRSVVDSIGKRRFKVLHQGQRDGYNTADIEYIEDQKVQGEDCAELMGLHNCVYEQASTWFHSLKASLKTRILNHFGPMPEKDEDPQPLSELGEVPTDA", "length": 774, "header": "tr|A0A9J7H866-1|A0A9J7H866_CRIGR Isoform 1 of LON peptidase N-terminal domain and RING finger protein 3 isoform X2 OS=Cricetulus griseus OX=10029 GN=Lonrf3 PE=4 SV=1 CANONICAL=A0A9J7H866-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H866-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H866/entry#A0A9J7H866-1", "sequence": { "sequence": "MDSFQSAQMLSLPAELGSNNLELAELAEPEERAASAAGGTSGAHPQASPEGSEPPPTRALEQTQNPGTSTPPPECKVLLTQADALASRGRLREALEVYRQLSERQQLVAEQLEQLVRCLAESVPQKETVAPAPSDQSGTSSCCKVAMEEAGEAAAVAPEVWDGFKCRKCHGFLSDPVSLWCGHTFCKLCLERGRAADRRCALCGVKLSALMVASGRARGPRRAGQPAPVQLRVNVVLSGLLGKLFPGPARASQLRHEGNRLYRERQVEAALLKYNEAVRLAPNDHLLYSNRSQIYFTLESHEDALHDAEIACKLRPMGFKAHFRKAQALATLGKVEEALREFLYCVSLDGNNKKARAEAQRLLFSFFSPSVSGDSQEHFPDILKLLATHPRLKEHVESMATEGTSHNLPKLSQGNPEIPHCSNQEEAAAGGDGSSLEKSAHVKVGSQENNVRDHEEEKQDAASVRTGKCQEKKRNRCQIDEIHEDTDVPNKVSKQDLPADQVAKQDPSIPLASFDASDLECSLCMRLFYEPVTTPCGHTFCLKCLERCLDHNAKCPLCKDVLLQCLPSRKYSKNVIMEELIAKFLPEELKERRRLHEEEMEELSNLNKNVPIFVCTMAYPTVPCPLHIFEPCYRLMIRRCIETGTKQFGMCLGDPVKGFAEYGCILEIRNVQFFADGRSVVDSIGKRRFKVLHQGQRDGYNTADIEYIEDQKVQGEDCAELMGLHNCVYEQASTWFHSLKASLKTRILNHFGPMPEKDEDPQPLSELGEVPTDA", "length": 774, "header": "tr|A0A9J7H866-1|A0A9J7H866_CRIGR Isoform 1 of LON peptidase N-terminal domain and RING finger protein 3 isoform X2 OS=Cricetulus griseus OX=10029 GN=Lonrf3 PE=4 SV=1 CANONICAL=A0A9J7H866-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 772, "start_aa": "Thr", "end_pos": 772, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr772", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H866", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H866" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H866", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H866" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100770239", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770239", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H866", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H866" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H866", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H866" } ], "pmid": "" }, { "name": "ubiquitin protein ligase activity", "id": "GO:0061630", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061630", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H866", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H866" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 290, "end_pos": 292, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7H866", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H866" }, { "id": "PS51787", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51787" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Lon N-terminal", "eco_id": "ECO_0000259", "start_pos": 600, "end_pos": 774, "start_aa": "Met", "end_aa": "Ala", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7H866", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H866" }, { "id": "PS50089", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50089" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RING-type", "eco_id": "ECO_0000259", "start_pos": 166, "end_pos": 203, "start_aa": "Cys", "end_aa": "Cys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 772 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 290, "end_pos": 292 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7H873-1", "uniprot_ac": "A0A9J7H873", "uniprot_id": "A0A9J7H873_CRIGR", "mass": { "chemical_mass": 55932.0, "monoisotopic_mass": 55932.0 }, "refseq": { "ac": "XP_035305055", "name": "putative killer cell immunoglobulin-like receptor like protein KIR3DP1 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305055" }, "gene_names": [ { "name": "LOC113837265", "type": "recommended", "evidence": [ { "id": "A0A9J7H873", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H873" } ] }, { "name": "LOC113837265", "type": "synonym", "evidence": [ { "id": "XP_035305055", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305055" } ] } ], "protein_names": [ { "name": "Killer cell immunoglobulin-like receptor like protein KIR3DP1 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7H873", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H873/entry#names_and_taxonomy" } ] }, { "name": "putative killer cell immunoglobulin-like receptor like protein KIR3DP1 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035305055", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305055" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 90% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035305055", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305055" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H873", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H873" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113837265", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H873", "locus": {} } ], "crossref": [ { "id": "A0A9J7H873", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H873", "database": "AlphaFoldDB", "categories": [] }, { "id": "113837265", "url": "https://www.ncbi.nlm.nih.gov/gene/113837265", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003599", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003599", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013151", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013151", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036179", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036179", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050412", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050412", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113837265", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113837265", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H873", "url": "https://www.orthodb.org/?gene=A0A9J7H873", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11738", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11738", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11738:SF113", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11738:SF113", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00047", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00047", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035305055", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305055", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H873", "url": 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This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035305086", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305086" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H895", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H895" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Clasrp", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H895", "locus": {} } ], "crossref": [ { "id": "A0A9J7H895", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H895", "database": "AlphaFoldDB", "categories": [] }, { "id": "103164071", "url": "https://www.ncbi.nlm.nih.gov/gene/103164071", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019147", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019147", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040397", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040397", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:103164071", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103164071", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H895", "url": "https://www.orthodb.org/?gene=A0A9J7H895", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13161", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13161", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13161:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13161:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF09750", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09750", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035305086", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305086", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H895", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H895", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H895-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H895-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MWHEARKHERKLRGMMVDYKKRAERRREYYEKIKKDPAQFLQVHGRACKVHLDSAVALAAESPVNMMPWQGDTNNMIDRFDVRAHLDHIPDYTPPLLTTISPEQESDERKCNYERYRGLVQNDFAGISEEQCLYQIYIDELYGGLQRPSEDEKKKLAEKKASIGYTYEDSTVAEVEKVAEKPEEEESPAEEESNSDEDEVIPDIDVEVDVDELNQEQVADLNKQATTYGMADGDFVRMLRKDKEEAEAIKHAKALEEEKAMYSGRRSRRQRREFREKRLRGRKISPPSYARRDSPTYDPYKRSPSESSSESRSRSRSPSPGREEKITFITSFGGSDEEAAAAAAAAAASGAAPGKPPAPPQPGGPAPGRNASARRRSSSTSASRTSSSRSSSRSSSRSRRGYYRSGRHARSRGARARARSAPRSRSSPGGKQDGVGAQNTGRGNRHSVEGTRVGFWPCSRMCLGSSWGFPREVWGEVDWIFSPYRRPVDLETGMTPCRSLDSKPSSSAATPRSRSRSGDRYKRGARAPRHHSSSRSRSSWSLSPSRSRSLTRSGSRSQSRSRSRSQSQSQSHSPSPPREKPTRPAASPAVGEKLKKTEPAAGKETGAAKPKLTPQERLKLRMQKALNRQFKADKKAAQEKMIQQEHERQEREDELRAMARKIRMKERERREKEREEWERQYSRQSRSPSPRYSREYSSSRRRSRSRSRSPHYRH", "length": 714, "header": "tr|A0A9J7H895-1|A0A9J7H895_CRIGR Isoform 1 of LOW QUALITY PROTEIN: CLK4-associating serine/arginine rich protein isoform X2 OS=Cricetulus griseus OX=10029 GN=Clasrp PE=4 SV=1 CANONICAL=A0A9J7H895-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H895-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H895/entry#A0A9J7H895-1", "sequence": { "sequence": "MWHEARKHERKLRGMMVDYKKRAERRREYYEKIKKDPAQFLQVHGRACKVHLDSAVALAAESPVNMMPWQGDTNNMIDRFDVRAHLDHIPDYTPPLLTTISPEQESDERKCNYERYRGLVQNDFAGISEEQCLYQIYIDELYGGLQRPSEDEKKKLAEKKASIGYTYEDSTVAEVEKVAEKPEEEESPAEEESNSDEDEVIPDIDVEVDVDELNQEQVADLNKQATTYGMADGDFVRMLRKDKEEAEAIKHAKALEEEKAMYSGRRSRRQRREFREKRLRGRKISPPSYARRDSPTYDPYKRSPSESSSESRSRSRSPSPGREEKITFITSFGGSDEEAAAAAAAAAASGAAPGKPPAPPQPGGPAPGRNASARRRSSSTSASRTSSSRSSSRSSSRSRRGYYRSGRHARSRGARARARSAPRSRSSPGGKQDGVGAQNTGRGNRHSVEGTRVGFWPCSRMCLGSSWGFPREVWGEVDWIFSPYRRPVDLETGMTPCRSLDSKPSSSAATPRSRSRSGDRYKRGARAPRHHSSSRSRSSWSLSPSRSRSLTRSGSRSQSRSRSRSQSQSQSHSPSPPREKPTRPAASPAVGEKLKKTEPAAGKETGAAKPKLTPQERLKLRMQKALNRQFKADKKAAQEKMIQQEHERQEREDELRAMARKIRMKERERREKEREEWERQYSRQSRSPSPRYSREYSSSRRRSRSRSRSPHYRH", "length": 714, "header": "tr|A0A9J7H895-1|A0A9J7H895_CRIGR Isoform 1 of LOW QUALITY PROTEIN: CLK4-associating serine/arginine rich protein isoform X2 OS=Cricetulus griseus OX=10029 GN=Clasrp PE=4 SV=1 CANONICAL=A0A9J7H895-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KE94-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KE94-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDRFLGFVKQIRRSRRRKGKKYRPEEDYQEGYEDVYYYASEHFRNESPYTKSASQTKPPDGALAVRRQSIPEEFKGSTVVELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKNVGERVVLEVEYELPPVSVQGSSVMFRTVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATLLIEYDVSVMDSVVTASGPLLVEVAKTPGASLGVALTTSVCCNKQVIVIDKIKSASIADRCGALHVGDHILSIDGTSMEYCTLAEATQFLANTTDQVKLEILPHHQTRLALKGPDHVKIQRSNRQLPWESWASNPCSLHTNHHHNSFHPDHCRVPALTFPKAPPPNSPPAMVSSSSPTSMSAYSLSSLNMGTLPRSLYSTSPRGTMMRRRLKKKDFKSSLSLASSTVGLAGQVVHTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVLAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSSGTFHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDNCSMEDAVQILQQCEDLVKLKIRKDEDNSDEQESSGAIIYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQPASSPKKFPISSHSSDMGDGEEDSSPIQKPGKLSDMYPSTVPSVDSAVDSWDGSGMDASYGSQGTTFQTPGYNFNTYDWRSPKQRGSLSPVPKPRSQTYPDVGLSNEDWDRSTASGFAGASDSAEAEQEENFWSQALEDLETCGQSGILRELEEKADRRVSLRNMTLLATIMSGSTMSLNHEAPTARTQLGRQASFQERSSSRPHYSQTTRSNTLPSDVGRKSVTLRKMKQEIKDIMSPTPVELHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRNPLASQKSIEQQALPGDWSEQNSAFFQQSSHGGNLETREPTNTL", "length": 1153, "header": "tr|A0A9J7HAH4-1|A0A9J7HAH4_CRIGR Isoform 1 of Glutamate receptor-interacting protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Grip1 PE=4 SV=1 CANONICAL=A0A9J7HAH4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H8B8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAH4/entry#A0A9J7H8B8-1", "sequence": { "sequence": "MDRFLGFVKQIRRSRRRKGKKYRPEEDYQEGYEDVYYYASEHFRNESPYTKSASQTKPPDGALAVRRQSIPEEFKGSTVVELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKNVGERVVLEVEYELPPVSVQGSSVMFRTVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATLLIEYDVSVMDSVVTASGPLLVEVAKTPGASLGVALTTSVCCNKQVIVIDKIKSASIADRCGALHVGDHILSIDGTSMEYCTLAEATQFLANTTDQVKLEILPHHQTRLALKGPDHAMVSSSSPTSMSAYSLSSLNMGTLPRSLYSTSPRGTMMRRRLKKKDFKSSLSLASSTVGLAGQVVHTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVLAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSSGTFHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDNCSMEDAVQILQQCEDLVKLKIRKDEDNSDEQESSGAIIYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQPASSPKKFPISSHSSDMGDGEEDSSPIQKPGKLSDMYPSTVPSVDSAVDSWDGSGMDASYGSQGTTFQTPGYNFNTYDWRSPKQRGSLSPVPKPRSQTYPDVGLSNEDWDRSTASGFAGASDSAEAEQEENFWSQALEDLETCGQSGILRELEATIMSGSTMSLNHEAPTARTQLGRQASFQERSSSRPHYSQTTRSNTLPSDVGRKSVTLRKMKQEIKDIMSPTPVELHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRNPLASQKSIEQQALPGDWSEQNSAFFQQSSHGGNLETREPTNTL", "length": 1085, "header": "tr|A0A9J7H8B8-1|A0A9J7HAH4_CRIGR Computationally mapped isoform of Glutamate receptor-interacting protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Grip1 PE=4 SV=1 CANONICAL=A0A9J7HAH4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HAH4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAH4/entry#A0A9J7HAH4-1", "sequence": { "sequence": "MDRFLGFVKQIRRSRRRKGKKYRPEEDYQEGYEDVYYYASEHFRNESPYTKSASQTKPPDGALAVRRQSIPEEFKGSTVVELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKNVGERVVLEVEYELPPVSVQGSSVMFRTVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATLLIEYDVSVMDSVVTASGPLLVEVAKTPGASLGVALTTSVCCNKQVIVIDKIKSASIADRCGALHVGDHILSIDGTSMEYCTLAEATQFLANTTDQVKLEILPHHQTRLALKGPDHVKIQRSNRQLPWESWASNPCSLHTNHHHNSFHPDHCRVPALTFPKAPPPNSPPAMVSSSSPTSMSAYSLSSLNMGTLPRSLYSTSPRGTMMRRRLKKKDFKSSLSLASSTVGLAGQVVHTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVLAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSSGTFHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDNCSMEDAVQILQQCEDLVKLKIRKDEDNSDEQESSGAIIYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQPASSPKKFPISSHSSDMGDGEEDSSPIQKPGKLSDMYPSTVPSVDSAVDSWDGSGMDASYGSQGTTFQTPGYNFNTYDWRSPKQRGSLSPVPKPRSQTYPDVGLSNEDWDRSTASGFAGASDSAEAEQEENFWSQALEDLETCGQSGILRELEEKADRRVSLRNMTLLATIMSGSTMSLNHEAPTARTQLGRQASFQERSSSRPHYSQTTRSNTLPSDVGRKSVTLRKMKQEIKDIMSPTPVELHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRNPLASQKSIEQQALPGDWSEQNSAFFQQSSHGGNLETREPTNTL", "length": 1153, "header": "tr|A0A9J7HAH4-1|A0A9J7HAH4_CRIGR Isoform 1 of Glutamate receptor-interacting protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Grip1 PE=4 SV=1 CANONICAL=A0A9J7HAH4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K330-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAH4/entry#A0A9J7K330-1", "sequence": { "sequence": "MDRFLGFVKQIRRSRRRKGKKYRPEEDYQEGYEDVYYYASEHFRNESPYTKSASQTKPPDGALAVRRQSIPEEFKGSTVVELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKNVGERVVLEVEYELPPVSVQGSSVMFRTVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATLLIEYDVSVMDSVVTASGPLLVEVAKTPGASLGVALTTSVCCNKQVIVIDKIKSASIADRCGALHVGDHILSIDGTSMEYCTLAEATQFLANTTDQVKLEILPHHQTRLALKGPDHAAMVSSSSPTSMSAYSLSSLNMGTLPRSLYSTSPRGTMMRRRLKKKDFKSSLSLASSTVGLAGQVVHTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVLAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSSGTFHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDNCSMEDAVQILQQCEDLVKLKIRKDEDNSDEQESSGAIIYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQPASSPKKFPISSHSSDMGDGEEDSSPIQKPGKLSDMYPSTVPSVDSAVDSWDGSGMDASYGSQGTTFQTPGYNFNTYDWRSPKQRGSLSPVPKPRSQTYPDVGLSNEDWDRSTASGFAGASDSAEAEQEENFWSQALEDLETCGQSGILRELEEKADRRVSLRNMTLLATIMSGSTMSLNHEAPTARTQLGRQASFQERSSSRPHYSQTTRSNTLPSDVGRKSVTLRKMKQEIKDIMSPTPVELHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRNPLASQKSIEQQALPGDWSEQNSAFFQQSSHGGNLETREPTNTL", "length": 1101, "header": "tr|A0A9J7K330-1|A0A9J7HAH4_CRIGR Computationally mapped isoform of Glutamate receptor-interacting protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Grip1 PE=4 SV=1 CANONICAL=A0A9J7HAH4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KD60-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAH4/entry#A0A9J7KD60-1", "sequence": { "sequence": "MDRFLGFVKQIRRSRRRKGKKYRPEEDYQEGYEDVYYYASEHFRNESPYTKSASQTKPPDGALAVRRQSIPEEFKGSTVVELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKNVGERVVLEVEYELPPVSVQGSSVMFRTVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATLLIEYDVSVMDSVVTASGPLLVEVAKTPGASLGVALTTSVCCNKQVIVIDKIKSASIADRCGALHVGDHILSIDGTSMEYCTLAEATQFLANTTDQVKLEILPHHQTRLALKGPDHAAMVSSSSPTSMSAYSLSSLNMGTLPRSLYSTSPRGTMMRRRLKKKDFKSSLSLASSTVGLAGQVVHTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVLAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSSGTFHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDNCSMEDAVQILQQCEDLVKLKIRKDEDNSDEQESSGAIIYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQPASSPKKFPISSHSSDMGDGEEDSSPIQKPGKLSDMYPSTVPSVDSAVDSWDGSGMDASYGSQGTTFQTPGYNFNTYDWRSPKQRGSLSPVPKPRSQTYPDVGLSNEDWDRSTASGFAGASDSAEAEQEENFWSQALEDLETCGQSGILRELEATIMSGSTMSLNHEAPTARTQLGRQASFQERSSSRPHYSQTTRSNTLPSDVGRKSVTLRKMKQEIKDIMSPTPVELHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRNPLASQKSIEQQALPGDWSEQNSAFFQQSSHGGNLETREPTNTL", "length": 1086, "header": "tr|A0A9J7KD60-1|A0A9J7HAH4_CRIGR Computationally mapped isoform of Glutamate receptor-interacting protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Grip1 PE=4 SV=1 CANONICAL=A0A9J7HAH4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KE94-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAH4/entry#A0A9J7KE94-1", "sequence": { "sequence": "MDRFLGFVKQIRRSRRRKGKKYRPEEDYQEGYEDVYYYASEHFRNESPYTKSASQTKPPDGALAVRRQSIPEEFKGSTVVELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKNVGERVVLEVEYELPPVSVQGSSVMFRTVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATLLIEYDVSVMDSVVTASGPLLVEVAKTPGASLGVALTTSVCCNKQVIVIDKIKSASIADRCGALHVGDHILSIDGTSMEYCTLAEATQFLANTTDQVKLEILPHHQTRLALKGPDHAMVSSSSPTSMSAYSLSSLNMGTLPRSLYSTSPRGTMMRRRLKKKDFKSSLSLASSTVGLAGQVVHTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVLAINGIPTEDSTFEEANQLLRDSSITSKVTLEIEFDVAESVIPSSGTFHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDNCSMEDAVQILQQCEDLVKLKIRKDEDNSDEQESSGAIIYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVTLKIKKQTDAQPASSPKKFPISSHSSDMGDGEEDSSPIQKPGKLSDMYPSTVPSVDSAVDSWDGSGMDASYGSQGTTFQTPGYNFNTYDWRSPKQRGSLSPVPKPRSQTYPDVGLSNEDWDRSTASGFAGASDSAEAEQEENFWSQALEDLETCGQSGILRELEEKADRRVSLRNMTLLATIMSGSTMSLNHEAPTARTQLGRQASFQERSSSRPHYSQTTRSNTLPSDVGRKSVTLRKMKQEIKDIMSPTPVELHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDLVISRNPLASQKSIEQQALPGDWSEQNSAFFQQSSHGGNLETREPTNTL", "length": 1100, "header": "tr|A0A9J7KE94-1|A0A9J7HAH4_CRIGR Computationally mapped isoform of Glutamate receptor-interacting protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Grip1 PE=4 SV=1 CANONICAL=A0A9J7HAH4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K330", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K330" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K330", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K330" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100767728", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767728", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "neurotransmitter receptor transport, endosome to postsynaptic membrane", "id": "GO:0098887", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098887", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HAH4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAH4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HAH4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAH4" } ], "pmid": "" }, { "name": "postsynaptic density", "id": "GO:0014069", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0014069", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HAH4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAH4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 201, "end_pos": 203, "annotation": "n_glycosylation_sequon" }, { "start_pos": 349, "end_pos": 351, "annotation": "n_glycosylation_sequon" }, { "start_pos": 45, "end_pos": 47, "annotation": "n_glycosylation_sequon" }, { "start_pos": 658, "end_pos": 660, "annotation": "n_glycosylation_sequon" }, { "start_pos": 749, "end_pos": 751, "annotation": "n_glycosylation_sequon" }, { "start_pos": 947, "end_pos": 949, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7HAH4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAH4" }, { "id": "PS50106", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50106" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PDZ", "eco_id": "ECO_0000259", "start_pos": 79, "end_pos": 162, "start_aa": "Val", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 201, "end_pos": 203 }, { "start_pos": 349, "end_pos": 351 }, { "start_pos": 45, "end_pos": 47 }, { "start_pos": 658, "end_pos": 660 }, { "start_pos": 749, "end_pos": 751 }, { "start_pos": 947, "end_pos": 949 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", 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"MTEATVGGQVRHLGDPFPVLGTTFWFPLSPGQLWLGVVRKAQAASGVTCTGLSPVKDEETSVPFEEAPHLDSEIFYSLSPSRRNFEEPPEVTSPTLALMNSVKAQLHMALERNSWLQKRIEDLEEERDFLRCQLDKFISSARMDAEDHCRMKPGPRRVDGDSRAGVGGEASDPESAASSFSGASEEGSASERKRQKQKGSTGRRRFGKPKARERQRVKDADGVLCRYKKILGTFQKLKSMSRAFEHHRVDRNTVALTTPIAELLIVAPEKLAEVGEFDPSKERLLEYSRRCFLALDDETLKKVQALKKSKLLLPITYRFKR", "length": 321, "header": "tr|A0A9J7H8I1-1|A0A9J7H8I1_CRIGR Isoform 1 of Coiled-coil domain-containing protein 106 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC113837239 PE=4 SV=1 CANONICAL=A0A9J7H8I1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H8I1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8I1/entry#A0A9J7H8I1-1", "sequence": { "sequence": "MTEATVGGQVRHLGDPFPVLGTTFWFPLSPGQLWLGVVRKAQAASGVTCTGLSPVKDEETSVPFEEAPHLDSEIFYSLSPSRRNFEEPPEVTSPTLALMNSVKAQLHMALERNSWLQKRIEDLEEERDFLRCQLDKFISSARMDAEDHCRMKPGPRRVDGDSRAGVGGEASDPESAASSFSGASEEGSASERKRQKQKGSTGRRRFGKPKARERQRVKDADGVLCRYKKILGTFQKLKSMSRAFEHHRVDRNTVALTTPIAELLIVAPEKLAEVGEFDPSKERLLEYSRRCFLALDDETLKKVQALKKSKLLLPITYRFKR", "length": 321, "header": "tr|A0A9J7H8I1-1|A0A9J7H8I1_CRIGR Isoform 1 of Coiled-coil domain-containing protein 106 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC113837239 PE=4 SV=1 CANONICAL=A0A9J7H8I1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JZM4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8I1/entry#A0A9J7JZM4-1", "sequence": { "sequence": "MNDRSNRRRTMKDEETSVPFEEAPHLDSEIFYSLSPSRRNFEEPPEVTSPTLALMNSVKAQLHMALERNSWLQKRIEDLEEERDFLRCQLDKFISSARMDAEDHCRMKPGPRRVDGDSRAGVGGEASDPESAASSFSGASEEGSASERKRQKQKGSTGRRRFGKPKARERQRVKDADGVLCRYKKILGTFQKLKSMSRAFEHHRVDRNTVALTTPIAELLIVAPEKLAEVGEFDPSKERLLEYSRRCFLALDDETLKKVQALKKSKLLLPITYRFKR", "length": 277, "header": "tr|A0A9J7JZM4-1|A0A9J7H8I1_CRIGR Computationally mapped isoform of Coiled-coil domain-containing protein 106 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC113837239 PE=4 SV=1 CANONICAL=A0A9J7H8I1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KCY1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8I1/entry#A0A9J7KCY1-1", "sequence": { "sequence": "MTEATVGGQDEETSVPFEEAPHLDSEIFYSLSPSRRNFEEPPEVTSPTLALMNSVKAQLHMALERNSWLQKRIEDLEEERDFLRCQLDKFISSARMDAEDHCRMKPGPRRVDGDSRAGVGGEASDPESAASSFSGASEEGSASERKRQKQKGSTGRRRFGKPKARERQRVKDADGVLCRYKKILGTFQKLKSMSRAFEHHRVDRNTVALTTPIAELLIVAPEKLAEVGEFDPSKERLLEYSRRCFLALDDETLKKVQALKKSKLLLPITYRFKR", "length": 274, "header": "tr|A0A9J7KCY1-1|A0A9J7H8I1_CRIGR Computationally mapped isoform of Coiled-coil domain-containing protein 106 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC113837239 PE=4 SV=1 CANONICAL=A0A9J7H8I1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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[], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7H8I8-1", "uniprot_ac": "A0A9J7H8I8", "uniprot_id": "A0A9J7H8I8_CRIGR", "mass": { "chemical_mass": 13731.0, "monoisotopic_mass": 13731.0 }, "refseq": { "ac": "XP_035305940", "name": "ubiquitin-conjugating enzyme E2 B", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305940" }, "gene_names": [ { "name": "LOC100750711", "type": "recommended", "evidence": [ { "id": "A0A9J7H8I8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8I8" } ] }, { "name": "LOC100750711", "type": "synonym", "evidence": [ { "id": "XP_035305940", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305940" } ] } ], "protein_names": [ { "name": "Ubiquitin-conjugating enzyme E2 B", "type": "synonym", "evidence": [ { "id": "A0A9J7H8I8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8I8/entry#names_and_taxonomy" } ] }, { "name": "ubiquitin-conjugating enzyme E2 B", "type": "synonym", "evidence": [ { "id": "XP_035305940", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305940" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048604.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035305940", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305940" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H8I8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8I8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100750711", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8I8", "locus": {} } ], "crossref": [ { "id": "A0A9J7H8I8", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H8I8", "database": "AlphaFoldDB", "categories": [] }, { "id": "100750711", "url": "https://www.ncbi.nlm.nih.gov/gene/100750711", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000608", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000608", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016135", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016135", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050113", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050113", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100750711", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100750711", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H8I8", "url": "https://www.orthodb.org/?gene=A0A9J7H8I8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24067", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24067", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00179", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00179", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035305940", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305940", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H8I8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8I8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H8I8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8I8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSTPALRRLMRDLLPWQEDPLVGVSGAPSENNIMQWNAVIFEPDGTPFEDVYADGSICLDTLQDRRSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQSWNDS", "length": 122, "header": "tr|A0A9J7H8I8-1|A0A9J7H8I8_CRIGR Isoform 1 of Ubiquitin-conjugating enzyme E2 B OS=Cricetulus griseus OX=10029 GN=LOC100750711 PE=4 SV=1 CANONICAL=A0A9J7H8I8-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H8I8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8I8/entry#A0A9J7H8I8-1", "sequence": { "sequence": "MSTPALRRLMRDLLPWQEDPLVGVSGAPSENNIMQWNAVIFEPDGTPFEDVYADGSICLDTLQDRRSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQSWNDS", "length": 122, "header": "tr|A0A9J7H8I8-1|A0A9J7H8I8_CRIGR Isoform 1 of Ubiquitin-conjugating enzyme E2 B OS=Cricetulus griseus OX=10029 GN=LOC100750711 PE=4 SV=1 CANONICAL=A0A9J7H8I8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H8I8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8I8" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100750711", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100750711", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 120, "end_pos": 122, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7H8I8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8I8" }, { "id": "PS50127", "database": "PROSITE", "url": 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"count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7H8I9-1", "uniprot_ac": "A0A9J7H8I9", "uniprot_id": "A0A9J7H8I9_CRIGR", "mass": { "chemical_mass": 118072.0, "monoisotopic_mass": 118072.0 }, "refseq": { "ac": "XP_035307035", "name": "histone-lysine N-methyltransferase MECOM isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307035" }, "gene_names": [ { "name": "Mecom", "type": "recommended", "evidence": [ { "id": "A0A9J7H8I9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8I9" } ] }, { "name": "Mecom", "type": "synonym", "evidence": [ { "id": "XP_035307035", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307035" } ] } ], "protein_names": [ { "name": "Histone-lysine N-methyltransferase MECOM isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7H8I9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8I9/entry#names_and_taxonomy" } ] }, { "name": "histone-lysine N-methyltransferase MECOM isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035307035", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307035" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035307035", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307035" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H8I9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8I9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Mecom", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8I9", "locus": {} } ], "crossref": [ { "id": "A0A9J7H8I9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H8I9", "database": "AlphaFoldDB", "categories": [] }, { "id": "100768628", "url": "https://www.ncbi.nlm.nih.gov/gene/100768628", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050331", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050331", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100768628", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768628", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H8I9", "url": "https://www.orthodb.org/?gene=A0A9J7H8I9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16515", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16515", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16515:SF49", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16515:SF49", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16515:SF57", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16515:SF57", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13912", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13912", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035307035", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307035", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H8I9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8I9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H8I9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8I9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H995", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H995", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H995-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H995-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HAN7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAN7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HAN7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAN7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HCN2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCN2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HCN2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCN2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KAU8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAU8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KAU8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAU8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKSEDDPHEPMAPDIHEERQHRCEDCDQLFESKAELADHQKFPCSTPHSAFSMVEEDLQQNLESESDLREIHGSQDCKECDRVFPDLQSLEKHMLSHTEEREYKCDQCPKAFNWKSNLIRHQMSHDSGKHYECENCAKQVFTDPSNLQRHIRSQHVGARAHACPECGKTFATSSGLKQHKHIHSSVKPFICEVCHKSYTQFSNLCRHKRMHADCRTQIKCKDCGQMFSTTSSLNKHRRFCEGKNHFAAGGFFGQGISLPGTPAMDKTSMVNMSHANPGLADYFGTNRHPAGLTFPTAPGFSFSFPGLFPSGLYHRPPLIPASPPVKGLSSTEQSNKCQSPLLTHPQILPATQDILKALSKHPPVGDNKPVELLPERSSEERPLEKISDQSESSDLDDVSTPSGSDLETTSGSDLESDLESDKEKCKENGKMFKDKVSPLQNLASINNKKEYSNHSVFSASVEEQTAVSGAVNDSIKAIASIAEKYFGSTGLVGLQDKKVGALPYPSMFPLPFFPAFSQSMYPFPDRDLRSLPLKMEPQSPSEVKKLQKGSSESPFDLTTKRKDEKPLTSVPSKPPATPATSQDQPLDLSMGSRSRAGGTKLAEPRKNHVFGEKKGSNMEARSTSDGSLQHARPTPFFMDPIYRVEKRKLTDPLEALKEKYLRPSPGFLFHPQFPLPDQRTWMSAIENMAEKLESFSALKPEASELLQSVPSMFSFRAPPNTLPENLLRKGKERYTCRYCGKIFPRSANLTRHLRTHTGEQPYRCKYCDRSFSISSNLQRHVRNIHNKEKPFKCHLCDRCFGQQTNLDRHLKKHENGNMSGTATSSPHSELESTGAILDDKEDAYFTEIRNFIGNSNHGSQSPRNMDERMNGSHFKDDKALVTSQSSDLLDDEEVEDEVLLDEEDEDNDIPGKSGKELGTTNLDEEIPEDDYEEAGTLEMSCKTSPVRYKEEDYKSGLSALDHIRHFTDSLKMRGMEENQYTDAELSSFSSSSLVPEELKQPLHRKSKSQAYAMMLSLSDKDPIHPTSHSSSNVWHSMARAAAESSAIQSISHV", "length": 1053, "header": "tr|A0A9J7H8I9-1|A0A9J7H8I9_CRIGR Isoform 1 of Histone-lysine N-methyltransferase MECOM isoform X2 OS=Cricetulus griseus OX=10029 GN=Mecom PE=4 SV=1 CANONICAL=A0A9J7H8I9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H8I9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8I9/entry#A0A9J7H8I9-1", "sequence": { "sequence": "MKSEDDPHEPMAPDIHEERQHRCEDCDQLFESKAELADHQKFPCSTPHSAFSMVEEDLQQNLESESDLREIHGSQDCKECDRVFPDLQSLEKHMLSHTEEREYKCDQCPKAFNWKSNLIRHQMSHDSGKHYECENCAKQVFTDPSNLQRHIRSQHVGARAHACPECGKTFATSSGLKQHKHIHSSVKPFICEVCHKSYTQFSNLCRHKRMHADCRTQIKCKDCGQMFSTTSSLNKHRRFCEGKNHFAAGGFFGQGISLPGTPAMDKTSMVNMSHANPGLADYFGTNRHPAGLTFPTAPGFSFSFPGLFPSGLYHRPPLIPASPPVKGLSSTEQSNKCQSPLLTHPQILPATQDILKALSKHPPVGDNKPVELLPERSSEERPLEKISDQSESSDLDDVSTPSGSDLETTSGSDLESDLESDKEKCKENGKMFKDKVSPLQNLASINNKKEYSNHSVFSASVEEQTAVSGAVNDSIKAIASIAEKYFGSTGLVGLQDKKVGALPYPSMFPLPFFPAFSQSMYPFPDRDLRSLPLKMEPQSPSEVKKLQKGSSESPFDLTTKRKDEKPLTSVPSKPPATPATSQDQPLDLSMGSRSRAGGTKLAEPRKNHVFGEKKGSNMEARSTSDGSLQHARPTPFFMDPIYRVEKRKLTDPLEALKEKYLRPSPGFLFHPQFPLPDQRTWMSAIENMAEKLESFSALKPEASELLQSVPSMFSFRAPPNTLPENLLRKGKERYTCRYCGKIFPRSANLTRHLRTHTGEQPYRCKYCDRSFSISSNLQRHVRNIHNKEKPFKCHLCDRCFGQQTNLDRHLKKHENGNMSGTATSSPHSELESTGAILDDKEDAYFTEIRNFIGNSNHGSQSPRNMDERMNGSHFKDDKALVTSQSSDLLDDEEVEDEVLLDEEDEDNDIPGKSGKELGTTNLDEEIPEDDYEEAGTLEMSCKTSPVRYKEEDYKSGLSALDHIRHFTDSLKMRGMEENQYTDAELSSFSSSSLVPEELKQPLHRKSKSQAYAMMLSLSDKDPIHPTSHSSSNVWHSMARAAAESSAIQSISHV", "length": 1053, "header": "tr|A0A9J7H8I9-1|A0A9J7H8I9_CRIGR Isoform 1 of Histone-lysine N-methyltransferase MECOM isoform X2 OS=Cricetulus griseus OX=10029 GN=Mecom PE=4 SV=1 CANONICAL=A0A9J7H8I9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H995-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8I9/entry#A0A9J7H995-1", "sequence": { "sequence": "MKSEDDPHEPMAPDIHEERQHRCEDCDQLFESKAELADHQKFPCSTPHSAFSMVEEDLQQNLESESDLREIHGSQDCKECDRVFPDLQSLEKHMLSHTEEREYKCDQCPKAFNWKSNLIRHQMSHDSGKHYECENCAKQVFTDPSNLQRHIRSQHVGARAHACPECGKTFATSSGLKQHKHIHSSVKPFICEVCHKSYTQFSNLCRHKRMHADCRTQIKCKDCGQMFSTTSSLNKHRRFCEGKNHFAAGGFFGQGISLPGTPAMDKTSMVNMSHANPGLADYFGTNRHPAGLTFPTAPGFSFSFPGLFPSGLYHRPPLIPASPPVKGLSSTEQSNKCQSPLLTHPQILPATQDILKALSKHPPVGDNKPVELLPERSSEERPLEKISDQSESSDLDDVSTPSGSDLETTSGSDLESDLESDKEKCKENGKMFKDKVSPLQNLASINNKKEYSNHSVFSASVEEQTAVSGAVNDSIKAIASIAEKYFGSTGLVGLQDKKVGALPYPSMFPLPFFPAFSQSMYPFPDRDLRSLPLKMEPQSPSEVKKLQKGSSESPFDLTTKRKDEKPLTSVPSKPPATPATSQDQPLDLSMGSRSRAGGTKLAEPRKNHVFGEKKGSNMEARSTSDGSLQHARPTPFFMDPIYRVEKRKLTDPLEALKEKYLRPSPGFLFHPQMSAIENMAEKLESFSALKPEASELLQSVPSMFSFRAPPNTLPENLLRKGKERYTCRYCGKIFPRSANLTRHLRTHTGEQPYRCKYCDRSFSISSNLQRHVRNIHNKEKPFKCHLCDRCFGQQTNLDRHLKKHENGNMSGTATSSPHSELESTGAILDDKEDAYFTEIRNFIGNSNHGSQSPRNMDERMNGSHFKDDKALVTSQSSDLLDDEEVEDEVLLDEEDEDNDIPGKSGKELGTTNLDEEIPEDDYEEAGTLEMSCKTSPVRYKEEDYKSGLSALDHIRHFTDSLKMRGMEENQYTDAELSSFSSSSLVPEELKQPLHRKSKSQAYAMMLSLSDKDPIHPTSHSSSNVWHSMARAAAESSAIQSISHV", "length": 1044, "header": "tr|A0A9J7H995-1|A0A9J7H995_CRIGR Computationally mapped isoform of Histone-lysine N-methyltransferase MECOM isoform X4 OS=Cricetulus griseus OX=10029 GN=Mecom PE=4 SV=1 CANONICAL=A0A9J7H8I9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HAN7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8I9/entry#A0A9J7HAN7-1", "sequence": { "sequence": "MKSEDDPHEPMAPDIHEERQHRCEDCDQLFESKAELADHQKFPCSTPHSAFSMVEEDLQQNLESESDLREIHGSQDCKECDRVFPDLQSLEKHMLSHTEEREYKCDQCPKAFNWKSNLIRHQMSHDSGKHYECENCAKVFTDPSNLQRHIRSQHVGARAHACPECGKTFATSSGLKQHKHIHSSVKPFICEVCHKSYTQFSNLCRHKRMHADCRTQIKCKDCGQMFSTTSSLNKHRRFCEGKNHFAAGGFFGQGISLPGTPAMDKTSMVNMSHANPGLADYFGTNRHPAGLTFPTAPGFSFSFPGLFPSGLYHRPPLIPASPPVKGLSSTEQSNKCQSPLLTHPQILPATQDILKALSKHPPVGDNKPVELLPERSSEERPLEKISDQSESSDLDDVSTPSGSDLETTSGSDLESDLESDKEKCKENGKMFKDKVSPLQNLASINNKKEYSNHSVFSASVEEQTAVSGAVNDSIKAIASIAEKYFGSTGLVGLQDKKVGALPYPSMFPLPFFPAFSQSMYPFPDRDLRSLPLKMEPQSPSEVKKLQKGSSESPFDLTTKRKDEKPLTSVPSKPPATPATSQDQPLDLSMGSRSRAGGTKLAEPRKNHVFGEKKGSNMEARSTSDGSLQHARPTPFFMDPIYRVEKRKLTDPLEALKEKYLRPSPGFLFHPQMSAIENMAEKLESFSALKPEASELLQSVPSMFSFRAPPNTLPENLLRKGKERYTCRYCGKIFPRSANLTRHLRTHTGEQPYRCKYCDRSFSISSNLQRHVRNIHNKEKPFKCHLCDRCFGQQTNLDRHLKKHENGNMSGTATSSPHSELESTGAILDDKEDAYFTEIRNFIGNSNHGSQSPRNMDERMNGSHFKDDKALVTSQSSDLLDDEEVEDEVLLDEEDEDNDIPGKSGKELGTTNLDEEIPEDDYEEAGTLEMSCKTSPVRYKEEDYKSGLSALDHIRHFTDSLKMRGMEENQYTDAELSSFSSSSLVPEELKQPLHRKSKSQAYAMMLSLSDKDPIHPTSHSSSNVWHSMARAAAESSAIQSISHV", "length": 1043, "header": "tr|A0A9J7HAN7-1|A0A9J7HAN7_CRIGR Computationally mapped isoform of Histone-lysine N-methyltransferase MECOM isoform X1 OS=Cricetulus griseus OX=10029 GN=Mecom PE=4 SV=1 CANONICAL=A0A9J7H8I9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HCN2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8I9/entry#A0A9J7HCN2-1", "sequence": { "sequence": "MKSEDDPHEPMAPDIHEERQHRCEDCDQLFESKAELADHQKFPCSTPHSAFSMVEEDLQQNLESESDLREIHGSQDCKECDRVFPDLQSLEKHMLSHTEEREYKCDQCPKAFNWKSNLIRHQMSHDSGKHYECENCAKVFTDPSNLQRHIRSQHVGARAHACPECGKTFATSSGLKQHKHIHSSVKPFICEVCHKSYTQFSNLCRHKRMHADCRTQIKCKDCGQMFSTTSSLNKHRRFCEGKNHFAAGGFFGQGISLPGTPAMDKTSMVNMSHANPGLADYFGTNRHPAGLTFPTAPGFSFSFPGLFPSGLYHRPPLIPASPPVKGLSSTEQSNKCQSPLLTHPQILPATQDILKALSKHPPVGDNKPVELLPERSSEERPLEKISDQSESSDLDDVSTPSGSDLETTSGSDLESDLESDKEKCKENGKMFKDKVSPLQNLASINNKKEYSNHSVFSASVEEQTAVSGAVNDSIKAIASIAEKYFGSTGLVGLQDKKVGALPYPSMFPLPFFPAFSQSMYPFPDRDLRSLPLKMEPQSPSEVKKLQKGSSESPFDLTTKRKDEKPLTSVPSKPPATPATSQDQPLDLSMGSRSRAGGTKLAEPRKNHVFGEKKGSNMEARSTSDGSLQHARPTPFFMDPIYRVEKRKLTDPLEALKEKYLRPSPGFLFHPQFPLPDQRTWMSAIENMAEKLESFSALKPEASELLQSVPSMFSFRAPPNTLPENLLRKGKERYTCRYCGKIFPRSANLTRHLRTHTGEQPYRCKYCDRSFSISSNLQRHVRNIHNKEKPFKCHLCDRCFGQQTNLDRHLKKHENGNMSGTATSSPHSELESTGAILDDKEDAYFTEIRNFIGNSNHGSQSPRNMDERMNGSHFKDDKALVTSQSSDLLDDEEVEDEVLLDEEDEDNDIPGKSGKELGTTNLDEEIPEDDYEEAGTLEMSCKTSPVRYKEEDYKSGLSALDHIRHFTDSLKMRGMEENQYTDAELSSFSSSSLVPEELKQPLHRKSKSQAYAMMLSLSDKDPIHPTSHSSSNVWHSMARAAAESSAIQSISHV", "length": 1052, "header": "tr|A0A9J7HCN2-1|A0A9J7HCN2_CRIGR Computationally mapped isoform of Histone-lysine N-methyltransferase MECOM isoform X3 OS=Cricetulus griseus OX=10029 GN=Mecom PE=4 SV=1 CANONICAL=A0A9J7H8I9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KAU8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8I9/entry#A0A9J7KAU8-1", "sequence": { "sequence": "MKSEDDPHEPMAPDIHEERQHRCEDCDQLFESKAELADHQKFPCSTPHSAFSMVEEDLQQNLESESDLREIHGSQDCKECDRVFPDLQSLEKHMLSHTEEREYKCDQCPKAFNWKSNLIRHQMSHDSGKHYECENCAKVFTDPSNLQRHIRSQHVGARAHACPECGKTFATSSGLKQHKHIHSSVKPFISFSQSMYPFPDRDLRSLPLKMEPQSPSEVKKLQKGSSESPFDLTTKRKDEKPLTSVPSKPPATPATSQDQPLDLSMGSRSRAGGTKLAEPRKNHVFGEKKGSNMEARSTSDGSLQHARPTPFFMDPIYRVEKRKLTDPLEALKEKYLRPSPGFLFHPQMSAIENMAEKLESFSALKPEASELLQSVPSMFSFRAPPNTLPENLLRKGKERYTCRYCGKIFPRSANLTRHLRTHTGEQPYRCKYCDRSFSISSNLQRHVRNIHNKEKPFKCHLCDRCFGQQTNLDRHLKKHENGNMSGTATSSPHSELESTGAILDDKEDAYFTEIRNFIGNSNHGSQSPRNMDERMNGSHFKDDKALVTSQSSDLLDDEEVEDEVLLDEEDEDNDIPGKSGKELGTTNLDEEIPEDDYEEAGTLEMSCKTSPVRYKEEDYKSGLSALDHIRHFTDSLKMRGMEENQYTDAELSSFSSSSLVPEELKQPLHRKSKSQAYAMMLSLSDKDPIHPTSHSSSNVWHSMARAAAESSAIQSISHV", "length": 719, "header": "tr|A0A9J7KAU8-1|A0A9J7H8I9_CRIGR Computationally mapped isoform of Histone-lysine N-methyltransferase MECOM isoform X2 OS=Cricetulus griseus OX=10029 GN=Mecom PE=4 SV=1 CANONICAL=A0A9J7H8I9-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": 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Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. 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"MDGLENRMVSEGRLFPDGEQPVAGASVVDPLRIWNSVTYDDVHVDFTWEEWTLLDPCQKNLYQTVMLETYMNLTSIGYKWEDHNTEEHCQSSRRRERHEKRQTGEKPSAYTHCVKAFAYDSHLQGHEGTCTGDKPYECNQCGKAFAQQRNLQAHKRIHTGEKPYACDQCERCRSTMKVAWQLVSEMDAISAG", "length": 192, "header": "tr|A0A9J7H9B5-1|A0A9J7H9B5_CRIGR Computationally mapped isoform of Zinc finger protein 431 isoform X5 OS=Cricetulus griseus OX=10029 GN=LOC100755006 PE=4 SV=1 CANONICAL=A0A9J7HBK3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HAR2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBK3/entry#A0A9J7HAR2-1", "sequence": { "sequence": "MNSVTYDDVHVDFTWEEWTLLDPCQKNLYQTVMLETYMNLTSIGYKWEDHNTEEHCQSSRRRERHEKRQTGEKPSAYTHCVKAFAYDSHLQGHEGTCTGDKPYECNQCGKAFAQQRNLQAHKRIHTGEKPYACDQCGKAFSHPSTLQMHKRIIHTREKPYECNQCGKVFACQSHLQVHKRIHTGDKPYECNQCGKAFSHHSSLQKHKRTHTGEKPYECNQCGKAFACQSHLQRHKRTHTGDKPYECNQCGKAFSHHSTLQRHKITHTGEKPYECDQCGKAFSHHSTLRMHKRTHTGEKPYECDQCGKAFACQSHLQVHKRTHTGEKPYVCDQCGKAFSQHSTLQMHKRTHTGDKPYVCNQCGKAFACDSHLQRHKRTHTGDKPYECNQCSKDFARQCNLQVHKRTYTGEKPDECNIFYFSLCTYQ", "length": 425, "header": "tr|A0A9J7HAR2-1|A0A9J7HAR2_CRIGR Computationally mapped isoform of Zinc finger protein 120 isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100755006 PE=3 SV=1 CANONICAL=A0A9J7HBK3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HBK3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBK3/entry#A0A9J7HBK3-1", "sequence": { "sequence": "MDGLENRMVSEGRLFPDGEQPVAGASVVDPLRIWNSVTYDDVHVDFTWEEWTLLDPCQKNLYQTVMLETYMNLTSIGYKWEDHNTEEHCQSSRRRERHEKRQTGEKPSAYTHCVKAFAYDSHLQGHEGTCTGDKPYECNQCGKAFAQQRNLQAHKRIHTGEKPYACDQCGKAFSHPSTLQMHKRIIHTREKPYECNQCGKVFACQSHLQVHKRIHTGDKPYECNQCGKAFSHHSSLQKHKRTHTGEKPYECNQCGKAFACQSHLQRHKRTHTGDKPYECNQCGKAFSHHSTLQRHKITHTGEKPYECDQCGKAFSHHSTLRMHKRTHTGEKPYECDQCGKAFACQSHLQVHKRTHTGEKPYVCDQCGKAFSQHSTLQMHKRTHTGDKPYVCNQCGKAFACDSHLQRHKRTHTGDKPYECNQCSKDFARQCNLQVHKRTYTGEKPDECNIFYFSLCTYQ", "length": 458, "header": "tr|A0A9J7HBK3-1|A0A9J7HBK3_CRIGR Isoform 1 of Zinc finger protein 120 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100755006 PE=3 SV=1 CANONICAL=A0A9J7HBK3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J7I9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBK3/entry#A0A9J7J7I9-1", "sequence": { "sequence": "MDGLENRMNSVTYDDVHVDFTWEEWTLLDPCQKNLYQTVMLETYMNLTSIGYKWEDHNTEEHCQSSRRRERHEKRQTGEKPSAYTHCVKAFAYDSHLQGHEGTCTGDKPYECNQCGKAFAQQRNLQAHKRIHTGEKPYACDQCGKAFSHPSTLQMHKRIIHTREKPYECNQCGKVFACQSHLQVHKRIHTGDKPYECNQCGKAFSHHSSLQKHKRTHTGEKPYECNQCGKAFACQSHLQRHKRTHTGDKPYECNQCGKAFSHHSTLQRHKITHTGEKPYECDQCGKAFSHHSTLRMHKRTHTGEKPYECDQCGKAFACQSHLQVHKRTHTGEKPYVCDQCGKAFSQHSTLQMHKRTHTGDKPYVCNQCGKAFACDSHLQRHKRTHTGDKPYECNQCSKDFARQCNLQVHKRTYTGEKPDECNIFYFSLCTYQ", "length": 432, "header": "tr|A0A9J7J7I9-1|A0A9J7J7I9_CRIGR Computationally mapped isoform of Zinc finger protein 120 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100755006 PE=3 SV=1 CANONICAL=A0A9J7HBK3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KAV5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBK3/entry#A0A9J7KAV5-1", "sequence": { "sequence": "MDGLENRMVSEGRLFPDGEQPVAGASVVDPLRIWNSVTYDDVHVDFTWEEWTLLDPCQKNLYQTVMLETYMNLTSIGYKWEDHNTEEHCQSSRRRERKMQEHHESGMATSVRNGRYISRLNTHIL", "length": 125, "header": "tr|A0A9J7KAV5-1|A0A9J7HBK3_CRIGR Computationally mapped isoform of Zinc finger protein 120 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100755006 PE=3 SV=1 CANONICAL=A0A9J7HBK3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KAV5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAV5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KAV5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAV5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100755006", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755006", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HBK3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBK3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HBK3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBK3" } ], "pmid": "" }, { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HBK3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBK3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HBK3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBK3" } ], "pmid": "" }, { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HBK3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBK3" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA 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], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035305277", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305277" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H8L5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8L5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Bicra", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8L5", "locus": {} } ], "crossref": [ { "id": "100764487", "url": "https://www.ncbi.nlm.nih.gov/gene/100764487", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR015671", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015671", "database": "InterPro", "categories": [ "Protein Classification" ] 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"site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 656, "start_aa": "Thr", "end_pos": 656, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr656", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 847, "start_aa": "Thr", "end_pos": 847, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr847", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 851, "start_aa": "Thr", "end_pos": 851, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr851", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 882, "start_aa": "Thr", "end_pos": 882, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr882", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 900, "start_aa": "Thr", "end_pos": 900, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr900", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H8L5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8L5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H8L5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8L5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100764487", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764487", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "SWI/SNF complex", "id": "GO:0016514", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016514", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H8L5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8L5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "positive regulation of DNA-templated transcription", "id": "GO:0045893", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045893", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H8L5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8L5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 112, "end_pos": 114, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1372, "end_pos": 1374, "annotation": "n_glycosylation_sequon" }, { "start_pos": 205, "end_pos": 207, "annotation": "n_glycosylation_sequon" }, { "start_pos": 219, "end_pos": 221, "annotation": "n_glycosylation_sequon" }, { "start_pos": 397, "end_pos": 399, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7H8L5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8L5" }, { "id": "PF15249", "database": "Pfam", "url": 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frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. 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{ "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": 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"MALVLQLLPLLLSRVQGDPQVSLEGSPGDRVNLSCIGVSDPTRWAWAPSFPACQGLSKGRRPILWASSSGTPAVFSHFSGRLRSLDTGIKRLELVLSAGDSGTFFCKGRQENESRTVLQVLGDKADCRASGSAHGSGYPKVLIALLVLGLALALGASGLVWWRHSPPPPPPPRPLPTFAPVVKAEPLEQESKSSGRLDQEPSLHYADLDHSVLGRHRRMSTVVPGDPSTVYAVVV", "length": 235, "header": "tr|A0A9J7HCE2-1|A0A9J7HCE2_CRIGR Computationally mapped isoform of Megakaryocyte and platelet inhibitory receptor G6b isoform X5 OS=Cricetulus griseus OX=10029 GN=Mpig6b PE=4 SV=1 CANONICAL=A0A9J7H8M7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J8G1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8M7/entry#A0A9J7J8G1-1", "sequence": { "sequence": "MALVLQLLPLLLSRVQGDPQVSLEGSPGDRVNLSCIGVSDPTRWAWAPSFPACQGLSKGRRPILWASSSGTPAVFSHFSGRLRSLDTGIKRLELVLSAGDSGTFFCKGRQENESRTVLQVLGDKADCRASGSAHAPVVKAEPLEQESKSSGRLDQEPSLHYADLDHSVLGRHRRMSTVVPGDPSTVYAVVV", "length": 191, "header": "tr|A0A9J7J8G1-1|A0A9J7J8G1_CRIGR Computationally mapped isoform of Megakaryocyte and platelet inhibitory receptor G6b isoform X3 OS=Cricetulus griseus OX=10029 GN=Mpig6b PE=4 SV=1 CANONICAL=A0A9J7H8M7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KEM7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8M7/entry#A0A9J7KEM7-1", "sequence": { "sequence": "MALVLQLLPLLLSRVQGDPQVSLEGSPGDRVNLSCIGVSDPTRWAWAPSFPACQGLSKGRRPILWASSSGTPAVFSHFSGRLRSLDTGIKRLELVLSAGDSGTFFCKGRQENESRTVLQVLGDKADCRASGSAHGRCPRPRLDHSPHLVRPSHLAPVVKAEPLEQESKSSGRLDQEPSLHYADLDHSVLGRHRRMSTVVPGDPSTVYAVVV", "length": 211, "header": "tr|A0A9J7KEM7-1|A0A9J7H8M7_CRIGR Computationally mapped isoform of Megakaryocyte and platelet inhibitory receptor G6b isoform X1 OS=Cricetulus griseus OX=10029 GN=Mpig6b PE=4 SV=1 CANONICAL=A0A9J7H8M7-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 71, 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"length": 1103, "header": "tr|A0A9J7H8N5-1|A0A9J7H8N5_CRIGR Isoform 1 of Proto-oncogene DBL isoform X2 OS=Cricetulus griseus OX=10029 GN=Mcf2 PE=3 SV=1 CANONICAL=A0A9J7H8N5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H8N5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8N5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100757503", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757503", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H8N5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8N5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "dendrite development", "id": "GO:0016358", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016358", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H8N5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8N5" } ], "pmid": "" }, { "name": "intracellular signal transduction", "id": "GO:0035556", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035556", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H8N5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8N5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005085", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H8N5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8N5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 749, "end_pos": 751, "annotation": "n_glycosylation_sequon" }, { "start_pos": 763, "end_pos": 765, "annotation": "n_glycosylation_sequon" }, { "start_pos": 978, "end_pos": 980, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7H8N5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8N5" }, { "id": "PS50191", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50191" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CRAL-TRIO", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 148, "start_aa": "Met", "end_aa": "His", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7H8N5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8N5" }, { "id": "PS50010", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50010" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DH", "eco_id": "ECO_0000259", "start_pos": 571, "end_pos": 751, "start_aa": "Leu", "end_aa": "Ser", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7H8N5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8N5" }, { "id": "PS50003", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50003" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PH", "eco_id": "ECO_0000259", "start_pos": 769, "end_pos": 885, "start_aa": "Lys", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 749, "end_pos": 751 }, { "start_pos": 763, "end_pos": 765 }, { "start_pos": 978, "end_pos": 980 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035305379", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305379" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H8S1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8S1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ccer2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8S1", "locus": {} } ], "crossref": [ { "id": "A0A9J7H8S1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H8S1", "database": "AlphaFoldDB", "categories": [] }, { "id": "100769486", "url": "https://www.ncbi.nlm.nih.gov/gene/100769486", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:100769486", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769486", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H8S1", "url": "https://www.orthodb.org/?gene=A0A9J7H8S1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "XP_035305379", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305379", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H8S1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8S1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H8S1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8S1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPHGAPTSAALLPLLLVLLLGDQYHGQCLFLPSIVSSAPLEPRPNKEELTRCLADVVMEVLTLGQAQRGPCTALLHKEIFEREPHGCVSLEEKRLLGGDFTKQEAGKMRSSHEIRDKEAEEAAERTQKSEVQEQAIHTQLHSQLRQEEEEEEEEEKSHPGKTLEHMWAQHLESARGPQKRVAEKASDEETAQFQAEEKGMQLLGGGHSLWQDAEKVRGERHEESSNHRHHLEQPDTKAKHEEEAEEEEAASEQEDGVDRLEHMEEQLKKATAMLGEALAREG", "length": 282, "header": "tr|A0A9J7H8S1-1|A0A9J7H8S1_CRIGR Isoform 1 of Coiled-coil domain-containing glutamate-rich protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Ccer2 PE=4 SV=1 CANONICAL=A0A9J7H8S1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H8S1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8S1/entry#A0A9J7H8S1-1", "sequence": { "sequence": "MPHGAPTSAALLPLLLVLLLGDQYHGQCLFLPSIVSSAPLEPRPNKEELTRCLADVVMEVLTLGQAQRGPCTALLHKEIFEREPHGCVSLEEKRLLGGDFTKQEAGKMRSSHEIRDKEAEEAAERTQKSEVQEQAIHTQLHSQLRQEEEEEEEEEKSHPGKTLEHMWAQHLESARGPQKRVAEKASDEETAQFQAEEKGMQLLGGGHSLWQDAEKVRGERHEESSNHRHHLEQPDTKAKHEEEAEEEEAASEQEDGVDRLEHMEEQLKKATAMLGEALAREG", "length": 282, "header": "tr|A0A9J7H8S1-1|A0A9J7H8S1_CRIGR Isoform 1 of Coiled-coil domain-containing glutamate-rich protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Ccer2 PE=4 SV=1 CANONICAL=A0A9J7H8S1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H8S1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8S1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H8S1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8S1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100769486", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769486", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7H8S5-1", "uniprot_ac": "A0A9J7H8S5", "uniprot_id": "A0A9J7H8S5_CRIGR", "mass": { "chemical_mass": 47231.0, "monoisotopic_mass": 47231.0 }, "refseq": { "ac": "XP_035307314", "name": "flocculation protein FLO11-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307314" }, "gene_names": [ { "name": "LOC113832476", "type": "recommended", "evidence": [ { "id": "A0A9J7H8S5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8S5" } ] }, { "name": "LOC113832476", "type": "synonym", "evidence": [ { "id": "XP_035307314", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307314" } ] } ], "protein_names": [ { "name": "Flocculation protein FLO11-like", "type": "synonym", "evidence": [ { "id": "A0A9J7H8S5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8S5/entry#names_and_taxonomy" } ] }, { "name": "flocculation protein FLO11-like", "type": "synonym", "evidence": [ { "id": "XP_035307314", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307314" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 62% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035307314", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307314" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H8S5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8S5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113832476", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8S5", "locus": {} } ], "crossref": [ { "id": "A0A9J7H8S5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H8S5", "database": "AlphaFoldDB", "categories": [] }, { "id": "113832476", "url": "https://www.ncbi.nlm.nih.gov/gene/113832476", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR028199", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028199", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113832476", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113832476", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H8S5", "url": "https://www.orthodb.org/?gene=A0A9J7H8S5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PF14654", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14654", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035307314", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307314", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H8S5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8S5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H8S5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8S5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSTPTSDTAGTSTASISTPTSDTAGTSTASISTPTSDTAGTSTASMSTPTSDTAGTSTASMSTPTSDTAGTSTASISTPTSDTAGTSTASMSTPTSDTAGTSTASMSTPTSDTAGTSTASIHSRDQHSLHVYTHSDTAGTSTASISTPTSDTAGTSTASISTPTSDTAGTSTASMSTPTSDTAGTSTASMSTPTSATAGTSTASMSTPASDTAGTSTASISTPTSDTAGTSTASISTPTSDTAGTSTASISTPTSDTAGTSTASMSTPTSDTAGTSTASMSTPTSATAGTSTASISTPTSDTAGTSTASMSTPTSDTAGTSTASISTPASDTAGTSTASMSTPTSDTAGTSTASMSTPTSATARTSTASNSGWITTHSSSSLAFSTGTDTTSNPTGTVGTPVNEEKPSGSLKPWEIFLITLASVVMATALLAGAICFAELQLRCRGPEDFLSPGQQTHSFRLPSVFTQGVELPAAAAPLCVKNSTTELRTA", "length": 491, "header": "tr|A0A9J7H8S5-1|A0A9J7H8S5_CRIGR Isoform 1 of Flocculation protein FLO11-like OS=Cricetulus griseus OX=10029 GN=LOC113832476 PE=4 SV=1 CANONICAL=A0A9J7H8S5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H8S5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8S5/entry#A0A9J7H8S5-1", "sequence": { "sequence": "MSTPTSDTAGTSTASISTPTSDTAGTSTASISTPTSDTAGTSTASMSTPTSDTAGTSTASMSTPTSDTAGTSTASISTPTSDTAGTSTASMSTPTSDTAGTSTASMSTPTSDTAGTSTASIHSRDQHSLHVYTHSDTAGTSTASISTPTSDTAGTSTASISTPTSDTAGTSTASMSTPTSDTAGTSTASMSTPTSATAGTSTASMSTPASDTAGTSTASISTPTSDTAGTSTASISTPTSDTAGTSTASISTPTSDTAGTSTASMSTPTSDTAGTSTASMSTPTSATAGTSTASISTPTSDTAGTSTASMSTPTSDTAGTSTASISTPASDTAGTSTASMSTPTSDTAGTSTASMSTPTSATARTSTASNSGWITTHSSSSLAFSTGTDTTSNPTGTVGTPVNEEKPSGSLKPWEIFLITLASVVMATALLAGAICFAELQLRCRGPEDFLSPGQQTHSFRLPSVFTQGVELPAAAAPLCVKNSTTELRTA", "length": 491, "header": "tr|A0A9J7H8S5-1|A0A9J7H8S5_CRIGR Isoform 1 of Flocculation protein FLO11-like OS=Cricetulus griseus OX=10029 GN=LOC113832476 PE=4 SV=1 CANONICAL=A0A9J7H8S5-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 207, "start_aa": "Thr", "end_pos": 207, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr207", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H8S5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8S5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:113832476", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113832476", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 483, "end_pos": 485, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7H8S5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8S5" }, { "id": "PF14654", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14654" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Mucin catalytic TM and cytoplasmic tail", "eco_id": "ECO_0000259", "start_pos": 399, "end_pos": 444, "start_aa": "Gly", "end_aa": "Cys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 207 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 483, "end_pos": 485 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035306709", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306709" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HC47", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HC47" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Fam131b", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HC47", "locus": {} } ], "crossref": [ { "id": "A0A9J7HC47", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HC47", "database": "AlphaFoldDB", "categories": [] }, { "id": "100751738", "url": "https://www.ncbi.nlm.nih.gov/gene/100751738", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026782", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026782", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100751738", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751738", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HC47", "url": "https://www.orthodb.org/?gene=A0A9J7HC47", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15736", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15736", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15736:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15736:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15010", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15010", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035306709", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306709", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H8S7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8S7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H8S7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8S7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HC47", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HC47", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HC47-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HC47-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKHTPKDLSQPQEGLPLCAYLEAPQKKKAGVPALLEVPRYHPFSSLPQQTRTDFSWDGINLSMEDTTSILPKLKRNSNAYGIGALAKSSFSGISRSMKDHVTKPTAMGQGRVAHMIEWQGWGKAPTIQPQHSHEAVRRDTDAYSDLSDGEKEARFLAGVMEQFAISEATLMAWSSMDGEDMSVNSTQEPLDCNYSDNYQELMESQDALAQAPMDGWPHSYVSQGMYCLGSSDAWEASDQSLIASPATGSYLGPAFDDSQPSLHDMGPSQPASGYSAHEPPPLLGVDTDWAPEVGGVDLARGSAEEEKRPLAPEEEEDAGCRDLESLSPREDPEMSTALSRKVSDVTSSGVQSFDEEEGDANN", "length": 362, "header": "tr|A0A9J7HC47-1|A0A9J7HC47_CRIGR Isoform 1 of Protein FAM131B isoform X1 OS=Cricetulus griseus OX=10029 GN=Fam131b PE=3 SV=1 CANONICAL=A0A9J7HC47-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H8S7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HC47/entry#A0A9J7H8S7-1", "sequence": { "sequence": "MDSTSSLHGSSLHRPSTEQTRTDFSWDGINLSMEDTTSILPKLKRNSNAYGIGALAKSSFSGISRSMKDHVTKPTAMGQGRVAHMIEWQGWGKAPTIQPQHSHEAVRRDTDAYSDLSDGEKEARFLAGVMEQFAISEATLMAWSSMDGEDMSVNSTQEPLDCNYSDNYQELMESQDALAQAPMDGWPHSYVSQGMYCLGSSDAWEASDQSLIASPATGSYLGPAFDDSQPSLHDMGPSQPASGYSAHEPPPLLGVDTDWAPEVGGVDLARGSAEEEKRPLAPEEEEDAGCRDLESLSPREDPEMSTALSRKVSDVTSSGVQSFDEEEGDANN", "length": 332, "header": "tr|A0A9J7H8S7-1|A0A9J7HC47_CRIGR Computationally mapped isoform of Protein FAM131B isoform X1 OS=Cricetulus griseus OX=10029 GN=Fam131b PE=3 SV=1 CANONICAL=A0A9J7HC47-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HC47-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HC47/entry#A0A9J7HC47-1", "sequence": { "sequence": "MKHTPKDLSQPQEGLPLCAYLEAPQKKKAGVPALLEVPRYHPFSSLPQQTRTDFSWDGINLSMEDTTSILPKLKRNSNAYGIGALAKSSFSGISRSMKDHVTKPTAMGQGRVAHMIEWQGWGKAPTIQPQHSHEAVRRDTDAYSDLSDGEKEARFLAGVMEQFAISEATLMAWSSMDGEDMSVNSTQEPLDCNYSDNYQELMESQDALAQAPMDGWPHSYVSQGMYCLGSSDAWEASDQSLIASPATGSYLGPAFDDSQPSLHDMGPSQPASGYSAHEPPPLLGVDTDWAPEVGGVDLARGSAEEEKRPLAPEEEEDAGCRDLESLSPREDPEMSTALSRKVSDVTSSGVQSFDEEEGDANN", "length": 362, "header": "tr|A0A9J7HC47-1|A0A9J7HC47_CRIGR Isoform 1 of Protein FAM131B isoform X1 OS=Cricetulus griseus OX=10029 GN=Fam131b PE=3 SV=1 CANONICAL=A0A9J7HC47-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035305394", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305394" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H8T1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8T1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100752458", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8T1", "locus": {} } ], "crossref": [ { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100752458", "url": "https://www.ncbi.nlm.nih.gov/gene/100752458", "database": "GeneID", "categories": [ 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Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048604.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035306180", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306180" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H8Y4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8Y4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100765442", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8Y4", "locus": {} } ], "crossref": [ { "id": "cd00063", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00063", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100765442", "url": "https://www.ncbi.nlm.nih.gov/gene/100765442", "database": "GeneID", "categories": [ 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"Protein" ] }, { "id": "A0A9J7K2F2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2F2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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"length": 1486, "header": "tr|A0A9J7H8Y4-1|A0A9J7H8Y4_CRIGR Isoform 1 of Fibronectin type III domain containing protein 3C1 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100765442 PE=3 SV=1 CANONICAL=A0A9J7H8Y4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K2F2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8Y4/entry#A0A9J7K2F2-1", "sequence": { "sequence": "MEHQFPPILAEIYPTVPFINGDPTYPMENWTLDPNAMATYSHYSQTMIQPKIYNTWTSCPQYWTQVIFIQVNPGEVLTIKADDGSVQHIQGPADVPLIAPTGNLPPIYLPPGYISQVVEENGIQKIIVVPQTLDYNMALSAPGHQLSPFIAPPQFTYPQALPFMYPPVQGEFPMPYMQEFVPQQIPLPAPPLPPPMLPPPMLPPPMLPPPMLPPPMLPPPMLSPPMLPPPMLPPPMLPPPMLPPPMLPPPMLPPPMLPPPMLPPLVVLQPLMLPPPMLPPPMLPPPMLPPPMLPPPMLPPPMLPPPMLPPPMLPRPVLPPPMLPPPPAFMYQEHHETYLQGRVNHNQFVERTVKTGDYSKKKMRDRQFENNTEYRTQPCCFNIEKPVVSDIQTRSATVSWNPNSTENSDHINSPVTFELALSSNGKNGIYKNIYNGKEVTVALHDLQPCTVYFLRITTVRGEEHRSVSEVISFTTPGCEPDPPLAPKLINRTKNSLNLQWKGSKDNGSKISSFLLEWDEGKGEEFKSCYSGSMKQHKIFKLMASTKYSFRLAAKNNFGFSNFSEIAVFYTSGNTPPAPLPPKLKEAGVYSLSLEWCAPTNPNPNDTLTYVLEMEEPRSGLGFKPKYNGEDLSCTVRNLQRNTAYKFRIFAYNLEGRSNSSGEVKYSTRPAKPGYPKKPYVVGAIYAHQVKIGWDSPKDNGGMHISSYSLEVSENSDGANVWKIIYNGTLQEFLYNDLQPGTTYKLRVFCTSPVGQSQPSDVLTIQTPTLPQESCRSLPLNGKTKCKNTNLLLGNRSVTGNLETVVRGKKAKSPRNDRKGSPGSEKKCALGSHSMKCGTVPARHPPSQCGTPVLTCKGPTCVIVSWEIPKCNGAEITDYRLQWGQIEDSMHLIYTGPCLRYEVKGLIPATTYFCRVQAVNIVGVGMFGGTGKVTTPGTVPAIVPMLQEVEDKVPAKLSSSCIAIQWEEPDCHGSPITGYNIEYGDKKILTVDRVTECVLKNLQPNTTYRIRIQAINHYGLSPFSPPIRSKTKPLPPEPPLLDCVVCGHQSLRFKWGNASNKKSLANFISYNLLMEDRSGRFSVIYHGPDLTHKVQKLSEYTQYKFKIQACNEAGEGPQSDVYTFTTTKTPPAALKAPKLHPLNNNSCEIKWDSLNPVKGDPIIYCLQVITGKKAEQIYKGPNTTFCFSNYLANSRYRFKVCAGRQYENSDGVQELWGPYSPSTLFSTYKHQSGHGKGGGGKGKGNHNDKDEKYKTEMRDDTFVLILMIGFALIAILCAVAIQYFLIN", "length": 1286, "header": "tr|A0A9J7K2F2-1|A0A9J7H8Y4_CRIGR Computationally mapped isoform of Fibronectin type III domain containing protein 3C1 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100765442 PE=3 SV=1 CANONICAL=A0A9J7H8Y4-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 15, "start_aa": "Thr", "end_pos": 15, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr15", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K2F2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K2F2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035307618", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307618" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H945", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H945" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ccdc194", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H945", "locus": {} } ], "crossref": [ { "id": "A0A9J7H945", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H945", "database": "AlphaFoldDB", "categories": [] }, { "id": "113833396", "url": "https://www.ncbi.nlm.nih.gov/gene/113833396", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:113833396", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113833396", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H945", "url": "https://www.orthodb.org/?gene=A0A9J7H945", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "XP_035307618", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307618", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H945", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H945", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H945-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H945-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAEPGPEPGRAWRLLALCGAAVFLAAAAAGGALVAWNLAASTARGPRCPEPEQVNATLWPPDSAPEVEELRRRLAEAEQLHESLAAQLQRAKGDKRELEVAFKACKDRQSRLQTQLKTLKIEMDEAKAQGTQMGLENGELTEALARWEAAAVESRQQLEAALQRVGAAEAAGEACAGREAALKERIDALETDLGNLQRLSRPRPRSGSRSKPSIRSRPRSGPTKGCRRPPRDPQ", "length": 234, "header": "tr|A0A9J7H945-1|A0A9J7H945_CRIGR Isoform 1 of Coiled-coil domain-containing protein 194 isoform X2 OS=Cricetulus griseus OX=10029 GN=Ccdc194 PE=4 SV=1 CANONICAL=A0A9J7H945-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H945-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H945/entry#A0A9J7H945-1", "sequence": { "sequence": "MAEPGPEPGRAWRLLALCGAAVFLAAAAAGGALVAWNLAASTARGPRCPEPEQVNATLWPPDSAPEVEELRRRLAEAEQLHESLAAQLQRAKGDKRELEVAFKACKDRQSRLQTQLKTLKIEMDEAKAQGTQMGLENGELTEALARWEAAAVESRQQLEAALQRVGAAEAAGEACAGREAALKERIDALETDLGNLQRLSRPRPRSGSRSKPSIRSRPRSGPTKGCRRPPRDPQ", "length": 234, "header": "tr|A0A9J7H945-1|A0A9J7H945_CRIGR Isoform 1 of Coiled-coil domain-containing protein 194 isoform X2 OS=Cricetulus griseus OX=10029 GN=Ccdc194 PE=4 SV=1 CANONICAL=A0A9J7H945-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 223, "start_aa": "Thr", "end_pos": 223, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr223", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"https://www.genome.jp/dbget-bin/www_bget?cge:118237725", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HA00", "url": "https://www.orthodb.org/?gene=A0A9J7HA00", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15592", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15592", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00076", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00076", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF11835", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF11835", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13893", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13893", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035306131", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306131", "database": 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"MSSNSPPACMETDSKRFKRNSRRTEGPSKVIHIHRMPNSVTEREVLCLALPFGKVSNLMLLKGKNQALMEMSTEENANAMVNYYTWVTPVLRGQPIHIQFSHYKELKVSRPRSQVGASSQGSASSQASASSQAGAFSQLGDPSQLGTAVARQSPVLRILVENYFYQVTLEVLHQLFSRFGTVLKIIIYSKNSRFQVLLQYAHPLSAQRAKLFLDGQNIYDACCTLRIAFSGLTDLTVKYNNEKSRDYTRPDLPSGDSQPLPAQKMTTAFGAPVVIAASPHASPGVPHTFAFSQVAAGLAMPEVCKALAPLAVPEVVVAAAAAAAESTVVTSGSPGGANAVLLVANLNPEKVTPQSLFILFGAYGNVQRVKILYNRKENALVQMADGCQAELALKHLNGHKLHGKSLCIMPSKHLSVKLPREGKEDQGLTKDYVNSPLHRFKKPGSKNFQNIFPPSATLHLSNLPTSVLEEDLKKLFSSSGGSVKAFKFFPKDHKMALIRMGSVEEAIQALVDLHGHLLGQNHHLRVSFSRITI", "length": 533, "header": "tr|A0A9J7HA00-1|A0A9J7HA00_CRIGR Isoform 1 of Polypyrimidine tract-binding protein 1-like OS=Cricetulus griseus OX=10029 GN=LOC100758684 PE=4 SV=1 CANONICAL=A0A9J7HA00-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H961-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HA00/entry#A0A9J7H961-1", "sequence": { "sequence": "MSSNSPPACMETDSKRFKRNSRRTEGPSKVIHIHRMPNSVTEREVLCLALPFGKVSNLMLLKGKNQALMEMSTEENANAMVNYYTWVTPVLRGQPIHIQFSHYKELKVSRPRSQVGAQTGLPASETSDQAGNVASATPAAVVDTGTAVARQSPVLRILVENYFYQVTLEVLHQLFSRFGTVLKIIIYSKNSRFQVLLQYAHPLSAQRAKLFLDGQNIYDACCTLRIAFSGLTDLTVKYNNEKSRDYTRPDLPSGDSQPLPAQKMTTAFGAPVVIAASPHASPGVPHTFAFSQVAAGLAMPEVCKALAPLAVPEVVVAAAAAAAESTVVTSGSPGGANAVLLVANLNPEKVTPQSLFILFGAYGNVQRVKILYNRKENALVQMADGCQAELALKHLNGHKLHGKSLCIMPSKHLSVKLPREGKEDQGLTKDYVNSPLHRFKKPGSKNFQNIFPPSATLHLSNLPTSVLEEDLKKLFSSSGGSVKAFKFFPKDHKMALIRMGSVEEAIQALVDLHGHLLGQNHHLRVSFSRITI", "length": 532, "header": "tr|A0A9J7H961-1|A0A9J7HA00_CRIGR Computationally mapped isoform of Polypyrimidine tract-binding protein 1-like OS=Cricetulus griseus OX=10029 GN=LOC100758684 PE=4 SV=1 CANONICAL=A0A9J7HA00-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HA00-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HA00/entry#A0A9J7HA00-1", "sequence": { "sequence": "MSSNSPPACMETDSKRFKRNSRRTEGPSKVIHIHRMPNSVTEREVLCLALPFGKVSNLMLLKGKNQALMEMSTEENANAMVNYYTWVTPVLRGQPIHIQFSHYKELKVSRPRSQVGASSQGSASSQASASSQAGAFSQLGDPSQLGTAVARQSPVLRILVENYFYQVTLEVLHQLFSRFGTVLKIIIYSKNSRFQVLLQYAHPLSAQRAKLFLDGQNIYDACCTLRIAFSGLTDLTVKYNNEKSRDYTRPDLPSGDSQPLPAQKMTTAFGAPVVIAASPHASPGVPHTFAFSQVAAGLAMPEVCKALAPLAVPEVVVAAAAAAAESTVVTSGSPGGANAVLLVANLNPEKVTPQSLFILFGAYGNVQRVKILYNRKENALVQMADGCQAELALKHLNGHKLHGKSLCIMPSKHLSVKLPREGKEDQGLTKDYVNSPLHRFKKPGSKNFQNIFPPSATLHLSNLPTSVLEEDLKKLFSSSGGSVKAFKFFPKDHKMALIRMGSVEEAIQALVDLHGHLLGQNHHLRVSFSRITI", "length": 533, "header": "tr|A0A9J7HA00-1|A0A9J7HA00_CRIGR Isoform 1 of Polypyrimidine tract-binding protein 1-like OS=Cricetulus griseus OX=10029 GN=LOC100758684 PE=4 SV=1 CANONICAL=A0A9J7HA00-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RRM", "eco_id": "ECO_0000259", "start_pos": 29, "end_pos": 113, "start_aa": "Lys", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", 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"field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7H967-1", "uniprot_ac": "A0A9J7H967", "uniprot_id": "A0A9J7H967_CRIGR", "mass": { "chemical_mass": 29084.0, "monoisotopic_mass": 29084.0 }, "refseq": { "ac": "XP_035307951", "name": "uncharacterized protein LOC118239606 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307951" }, "gene_names": [ { "name": "LOC118239606", "type": "recommended", "evidence": [ { "id": "A0A9J7H967", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H967" } ] }, { "name": "LOC118239606", "type": "synonym", "evidence": [ { "id": "XP_035307951", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307951" } ] } ], "protein_names": [ { "name": "Uncharacterized protein LOC118239606 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7H967", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H967/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein LOC118239606 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035307951", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307951" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035307951", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307951" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H967", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H967" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC118239606", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H967", "locus": {} } ], "crossref": [ { "id": "A0A9J7H967", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H967", "database": "AlphaFoldDB", "categories": [] }, { "id": "118239606", "url": "https://www.ncbi.nlm.nih.gov/gene/118239606", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:118239606", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118239606", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_035307951", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307951", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H967", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H967", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H967-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H967-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MCQKDEGDCTRRPQHGHPPGGRLYPQSSACQSTRRETVPAVLSVDIHPEGDCTRSPQRGHPPGGRLYPQSSAWTSTRRETVPADLSVDTHPEGDCTHSPQHANPPGGRLYPQSSAWTSTRRETVPADLSVDTHPEGDCTRSPQRGHPPGGRLYPQTSAWTSTRRETIPADLSVDIHPEGDCTRSPQRGHPPGGRLYPQTSAWTSTRRETVPTVLSMDIHPEGDCTHSPQRGHPPGGRLYPQSSACQSTQELCAAFQRLCSPRSFSI", "length": 266, "header": "tr|A0A9J7H967-1|A0A9J7H967_CRIGR Isoform 1 of Uncharacterized protein LOC118239606 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC118239606 PE=4 SV=1 CANONICAL=A0A9J7H967-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H967-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H967/entry#A0A9J7H967-1", "sequence": { "sequence": "MCQKDEGDCTRRPQHGHPPGGRLYPQSSACQSTRRETVPAVLSVDIHPEGDCTRSPQRGHPPGGRLYPQSSAWTSTRRETVPADLSVDTHPEGDCTHSPQHANPPGGRLYPQSSAWTSTRRETVPADLSVDTHPEGDCTRSPQRGHPPGGRLYPQTSAWTSTRRETIPADLSVDIHPEGDCTRSPQRGHPPGGRLYPQTSAWTSTRRETVPTVLSMDIHPEGDCTHSPQRGHPPGGRLYPQSSACQSTQELCAAFQRLCSPRSFSI", "length": 266, "header": "tr|A0A9J7H967-1|A0A9J7H967_CRIGR Isoform 1 of Uncharacterized protein LOC118239606 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC118239606 PE=4 SV=1 CANONICAL=A0A9J7H967-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048604.1) annotated using gene prediction method: Gnomon. 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"table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7H998-1", "uniprot_ac": "A0A9J7H998", "uniprot_id": "A0A9J7H998_CRIGR", "mass": { "chemical_mass": 363582.0, "monoisotopic_mass": 363582.0 }, "refseq": { "ac": "XP_035307602", "name": "LOW QUALITY PROTEIN: cilia- and flagella-associated protein 54", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307602" }, "gene_names": [ { "name": "Cfap54", "type": "recommended", "evidence": [ { "id": "A0A9J7H998", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H998" } ] }, { "name": "Cfap54", "type": "synonym", "evidence": [ { "id": "XP_035307602", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307602" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: cilia- and flagella-associated protein 54", "type": "synonym", "evidence": [ { "id": "XP_035307602", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307602" }, { "id": "A0A9J7H998", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H998/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035307602", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307602" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H998", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H998" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cfap54", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H998", "locus": {} } ], "crossref": [ { "id": "103163121", "url": "https://www.ncbi.nlm.nih.gov/gene/103163121", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR027912", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027912", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:103163121", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103163121", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H998", "url": "https://www.orthodb.org/?gene=A0A9J7H998", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR33487", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33487", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR33487:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33487:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14858", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14858", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035307602", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307602", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H998", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H998", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H998-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H998-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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"length": 3194, "header": "tr|A0A9J7H998-1|A0A9J7H998_CRIGR Isoform 1 of LOW QUALITY PROTEIN: cilia- and flagella-associated protein 54 OS=Cricetulus griseus OX=10029 GN=Cfap54 PE=4 SV=1 CANONICAL=A0A9J7H998-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H998-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H998/entry#A0A9J7H998-1", "sequence": { "sequence": "MQVAWLPGGRCLATPCTPAPSVLPLTDMATSSYSSSSSESRESEASVSPVQLPPTPPPTSIAIFKSPRESKSSSSKTSHWSSSEESLPAAAFYGPLDAKNPLLVSCDKEIRELLGFIKKKKALATSEEQKHEFHRRCATTLFNIWTKYAPRLPPDYYNEKLLKVGDSLCQIKEYKLALLQCYRRYLQQFGDFDEHKEDVNQFKTVFFPKGFGDETAELTFHVLSSKNICSYKLVCDNDANLQNKESVSQCLHILSSLRLIMQVALPQEHLCWIIFNGTIYIYTICRKLMLIGLSAKALEYLLWASMCMESSAPLLSLRYLTWRATLYTAVCQCHYDCQTSIHGEAFARRALAKIDELRQLELMSSSKCQEESRRYYREATIKMAVMIFKRGVFESRRKNKAVFRPKIRINLKEAQSMVWPRTVTERLLDELFDCTASRFLAVLEALSDSSRRILQTGPLVTDEVELRDVVSELFMAGKELLILSNVGTNGKLDFPKTFFLEHMIERKNIISVCAAVKFTKLAFTYEEWGLFESLAGQLIQFLQKQDIPHLKRAEKDLILLLAVEPLINIKKNKGLIFPLDSDKEGQSVQVYLKHIARHESCVRSCGYSEDIFNLAAILHFCVCVPNKGVQPDKDIVVDIISFLWQKCKLGIQRINMSRSDFSKYSHKISTSKWIYLLWQISEVIHCYQMENLDIVMVAEITLRLSEILESLGSPRRKFRKSADMSAKKGPEEFPGTPKGIPEVLPILKRAPVEQLFYAYELLDKAIAGMNWNFMLTTLSDGSSTIDHCYAKYSQDMNGSTYTPISANSLMMDLHLELIHTQHRIAVVLLDQLQVLQMPTVSTNTKGWEKLKEPKSTQCFTELSVLNKIRKNKLVRASYLMQKALLLFEKNAACVNSQNLLMEAYALIEKLEAEQNALYSYQNYLENSKTKKSRIPPPPILLARTHCSVTLKPAPFISDVKVSWYCILGCKAEGSYGKVRLNNNRLPNSGEAIPADGKSIFEIKGLETNEKYIFAIAAYSSNGKLIGDAVGETTKPILIYPPLSAVTARMYLTQVAYQIGNYELAKKVFSPVWGYFVASPPQDDQSVVSLSNIMMVTQKRMQSNILADTSSILLYLFLRNIFVMSDIKIKEENLFCDNIKGNEIFPAQQMARLRECENVLVALELSNFLNDSNYALQAVTQCYGLLAPIIYHNIVLVPVIQILIKCIVVLQAIPNIVHSKKQVASFESIQHMIACCVFYMAKILRSWKEYDLAIAIINYGKKTLDITTACRSLFCNGQDDTGDEGTCYKKTSRSKKPQQVLLPEKINEQLNFLETHLLKLTKQYGSAELSGAEDPIFLYPVVLNWSMKGAMKEVMKFKQRPRFLEFFTQVMLKCMNDEKFQLMVEMVAPIYDFLKRRNESLIGAKRLRCRENTFSKKIPKSPKKYKAIVIEIGRTADWLPRRRKKKKETLREFFFKNPSIFELPEHERSKRTDVKKMAYRSLADNLNPIILNYIKRKRCHQIILEELPWRAQMNLFLASAHFHLFLLKLSERTKMRYSSSQSNVSFRLCDPNYFSLYNSGTLLPTAKVAVDNYKTMLDFLMASKKKKPNQSGDTEDFTTFWNSKSDDSVSKIKTQLIYESESQLAVGINAREKDRALNWGLDHFMKVFSCCSRAMVLAYRGGYWTLLQNCCRAFWNFAQELQILLKQAVDTYKAFPINQDSFLCACVLPFSLGTELLIDMLIKLQSTNSVKPVEDKGDFSVPSCYGNIKSDNGGSSLIFEHPLDDINVVDLKWIHDYVLKSLEILYQVEKWETLVSLAIQFNTISHERYTEQVTPLLVYAQRQLLTRIQKFNGPDIAQQACARYEADNGQKITCRNFIGKQLMIDPSSPRTLPDAEGCSDLLKMLILSEHQRAKQLVCVPVDVEDTLRCFRETLEKSKYHNRSVRHTKKLLLLFLAQTQGEKGGISNMQFSSGKVEFCLGTEEMHMSTPPDLSQENFRVFSSVEKSKLPYSQLGLVISSFYQTIDVLQDSNQRSLKVQLLHSLGSLFVFAEKKRAAFKCWCQALDDIFRKPDALHTWKEFGTSIPSATNNSSPPVFKDYSEEFLSKLGIWGCLQGAVIAAKIAQFIKTANVKQRTNCCILSALLFQSLLRTTLLHPKAEHSYAQYEITQLLPGIELFTDQFRADICSVIASLYYVIRELHYAKYNLIVLPLLALYQYFVTVICQDIVRNLEARILKAEILIDLGFFSEASYEIFQIFHGKNLPSTIPAGYKTIAKVKTIQSFDSGKPLTNKDNIQVLEDLVNKGLPLILVTLGHQHLLNKYNFVKAHFFISLAATINCIPDSSSKTLFYQLPSTRTSPTPQTLKDNENVHAQSLRLRDESTLCMMKSLLLTEAEEKINSLLSDMDLQCHKPLCQCSAQELEILVEARLQLAAIALQRQRAPYGAAIVYSTLKLLQDSKIFKKRMPEDLDSPTSPVNSTTENKDDSEFLDPISLNAREYFNIHLWLKCRLMLVTAFIAQIRGIGIMKENDMTDCLSLINEVCMEAKSADDMEILAELLMQAVILGLQEKHLKADIIGNLQEIINLLDGNEFLSPPSWLTLVRSLLLMDDLTKAEKFKDASSKDDKLIFLNQAHSILIAQMLTFGETIKFPLSDADFANPQQPLKNIYLPHVILLAKVKLRIGHTLSKQVYSQNKKKDITKWLPSLHIFEMALKLCKVAALEECEVEAEILFQKGRIERQMLKEDKSPISQVESFFEAIQLSLRNDQNPGLIRDSYLEIALMYFYLKKPKRKVSGTPSSLKPLGKRQSSIKEHASTRFEKFSLLAWIAIRAAAQVSEAVLTINLLIGKKNARTDKVSYMALPNIPEFAIVDLLSSYTDYLLENYQVSFQTGSPFLQQNDEIYDSVDPKRKANNKVDITWILLIRYFIHLQRINNMSKLLASATPVSGISLPDDMLLTSLYNSELILRQKEMHLFLKKFLQFYSSSCIDEFPKELIQGVEKSVSLEKFLFETSGKVHRENSLQSDISGKLFCSPSYTEAFSEMAVQAVNKELCFQWYIPPLDKPPKDTEPMVLLLYAYNLKPLKISDIKVPTANNLYVGTSWIPLNRVISIHEKLSNLAQIAELSLPSVPEIILEENVYETVEPEDKIVDTDIDNMILDCCSEIVALFSKDQDPTPLYEVPFDISLPAIFSLERLFDLANGCIVSVGSLFNWVVSIIP", 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035306298", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306298" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H9F9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9F9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Insl3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9F9", "locus": {} } ], "crossref": [ { "id": "A0A9J7H9F9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H9F9", "database": "AlphaFoldDB", "categories": [] }, { "id": "118239441", "url": "https://www.ncbi.nlm.nih.gov/gene/118239441", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR036438", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036438", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043387", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043387", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:118239441", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118239441", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H9F9", "url": "https://www.orthodb.org/?gene=A0A9J7H9F9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10423", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10423", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10423:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10423:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_035306298", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306298", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H9F9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9F9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H9F9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9F9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAPPVSFTAQTAFDSQQSSCLSFLSARKTCGNHHYNRRGTWFSLKCWEVLAPGRETSGSLAGHTAPGRDPKHRPSRCCTRCSRQGPWAVRGNYKGHPRQLPLATMRALLLLLLLLLLPTLELALRSRQSPEARDKLCGHHLVRALVRVCGGPRWSSEASQPADARDSE", "length": 168, "header": "tr|A0A9J7H9F9-1|A0A9J7H9F9_CRIGR Isoform 1 of Insulin-like 3 OS=Cricetulus griseus OX=10029 GN=Insl3 PE=4 SV=1 CANONICAL=A0A9J7H9F9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H9F9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9F9/entry#A0A9J7H9F9-1", "sequence": { "sequence": "MAPPVSFTAQTAFDSQQSSCLSFLSARKTCGNHHYNRRGTWFSLKCWEVLAPGRETSGSLAGHTAPGRDPKHRPSRCCTRCSRQGPWAVRGNYKGHPRQLPLATMRALLLLLLLLLLPTLELALRSRQSPEARDKLCGHHLVRALVRVCGGPRWSSEASQPADARDSE", "length": 168, "header": "tr|A0A9J7H9F9-1|A0A9J7H9F9_CRIGR Isoform 1 of Insulin-like 3 OS=Cricetulus griseus OX=10029 GN=Insl3 PE=4 SV=1 CANONICAL=A0A9J7H9F9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H9F9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9F9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H9F9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9F9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:118239441", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118239441", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H9F9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9F9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway", "id": "GO:0007193", 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"table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7H9H7-1", "uniprot_ac": "A0A9J7H9H7", "uniprot_id": "A0A9J7H9H7_CRIGR", "mass": { "chemical_mass": 190238.0, "monoisotopic_mass": 190238.0 }, "refseq": { "ac": "XP_035307626", "name": "uncharacterized protein C4orf54 homolog", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307626" }, "gene_names": [ { "name": "CUNH4orf54", "type": "recommended", "evidence": [ { "id": "A0A9J7H9H7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9H7" } ] }, { "name": "CUNH4orf54", "type": "synonym", "evidence": [ { "id": "XP_035307626", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307626" } ] } ], "protein_names": [ { "name": "Uncharacterized protein C4orf54 homolog", "type": "synonym", "evidence": [ { "id": "A0A9J7H9H7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9H7/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein C4orf54 homolog", "type": "synonym", "evidence": [ { "id": "XP_035307626", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307626" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035307626", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307626" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H9H7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9H7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "CUNH4orf54", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9H7", "locus": {} } ], "crossref": [ { "id": "103164428", "url": "https://www.ncbi.nlm.nih.gov/gene/103164428", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR027838", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027838", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052303", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052303", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:103164428", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103164428", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7H9H7", "url": "https://www.orthodb.org/?gene=A0A9J7H9H7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR33775", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33775", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR33775:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33775:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15232", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15232", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035307626", "url": 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"MLSVHFWQTRGRPTDAASSLADGIQTPSHGRCQTSNWTGQLSSRTLATVAARAAAPWLQTSSAAPLGSPPASLWLAEAPPQGLKHWAVVAAVAVVPTALGPAQARGNLFQATLRPLQDQRGTQDSPRAHHCLFLSLKPGQGLRMEGGTSDMNPQTSLTPAEDRVSGAQNSPEPRQQLRPLPEPLDSTQPEAKYVEMCASAGVRSESPQTMKSLLEHCLREQASGSPTTKAKDEPSSHASEAPTPRKSPASSQCPSSRASENDFSSSSSSSSSPVDRAEDAGLSKTDDPTKLLGILATSSSSLGFESEAEMSCQQHNREEAGERAGAREVKRGGVGDGTECKDIIAKSQGKRDPLKNEEAHYITTHEIQLSEMEQGMDFDVGLASRWDFEDNNVIYSFVDYASFGGSDETPGDITTEEDDDNSCYVSTTPSTNTTRTPSPISSDLARPSAGSSGRDTSSTEVGSGPSDSDTIPPPTGPGTATPPEPLLELREAALRAPVTAASSCGSAASQILLSIKPTSRAINEPSNVRAKQNIIYAAKHEGDMSLRVSTAAEHNSSSQKQNSAAAVAQDHAKKFIAVPARLQTRCGAIRAKELVDYSSGASSAVSELDDADKEVRNLTSRAFRSLAYPYFEALNISSRESSTTLSEVGFGRWSTFLDLKCGGVGARVEQSLLRSSAASVAAGLRKGGGARATADQLYLQARKSQTKALEFVVSKVEGEIKHVETPLCFQKQVQTGSRVVTLLEPLNLRSESKASSATGPCRVSKGSSKGPGSVYTDDGSETSESNKPASRSDGPQKKSKFASSLLKNVISKKMQREHEFKMERGEVSDTSHRNAPSTSKEIEGPPGAEKPWERGLQRQSSRHSEASSEYTVVSVSDAGGEGSVVGSKSPVFKASTPRESNTGPGRNFSDGHTEVCEIKKSASETVKGIFLRSQNSAFRTWKEKEAEKMDEKAPVGKLKPPKGGDWRADLGEISGSKPTIMSRLFVPNIQQTPKDKQPGKQATKYPAAAAQATSTAVIRPKAPEIKIRLGSVQQPSSDFNIAKLLTPKLASGSNSNLFKTIEDNSRTQQKLFRGGDNLEKVPQFQVRDVRDKSKAPGPLHQVRDVRKLIKGSGDNSDKGSVTPEQGLTGPKPRQLTAAAGGSGSLSPMVIMCQAVVNPKEDSAERESREGLSKVGSGSRVLNSSPEGTVLVHRASGRLPVATIAPNKSEQGSYLPVLKIVSKASAQRTPEKPKEEDMKEEGKAPKPARNALEKLTAAVRSMEELYSFNRNEWKRKSDPLPMMADSHVLSLIASEEREGVAGPEGDPDKLAKQLGQMEERDVGHKAGVVLRGAPIERLQRRNSNPSTESVSARAAAFENMARERPRSLYIPPVHKDAERAQPLQPLPPLPNNRNVFTMSASSTQKTGGVAGKFPQGPSPESLSAAKGIKSQGLRSLKISPATRAPPDEVTNRKTAVSLEKSNSECENYLSTPLKGSSASGELLGRPGPSRDGPPSSSAATLCSLPPLSARSQVPNNSKGTHVSGTSRPAWRTKPDNHREVVAAPTGLQSPEHTPTAVYHQQALPFTLQGAQPQVLCFSPPGMPAPAPAGPAAVPTDPFQQTQPQQTQRKMLLDVTTGQYYLVDTPVQPMTRRLFDPETGQYVDVPMTSQQQPVAPMSLPVPPLALSPGAYGPTYMIYPGFLPTVLPSNALQPTPIAHTAGGSELSVAAETPTKETAAAFTEAPYFMASGQSPASSSSSAPAATSQLVGAKGFAQLHGKPVISITSQPLGPRIIAPPSFDGTTMSFVVEHR", 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Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035308151", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308151" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H9J7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9J7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC107977279", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9J7", "locus": {} } ], "crossref": [ { "id": "A0A9J7H9J7", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7H9J7", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd18273", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18273", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd18482", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18482", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "107977279", "url": "https://www.ncbi.nlm.nih.gov/gene/107977279", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000210", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000210", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011705", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011705", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047931", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047931", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047933", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047933", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:107977279", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:107977279", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR24412", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24412", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24412:SF23", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24412:SF23", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00651", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00651", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07707", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07707", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035308151", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308151", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H9J7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9J7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H9J7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9J7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HD68", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HD68", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HD68-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HD68-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HDE4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDE4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HDE4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDE4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KEY4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEY4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KEY4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEY4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQSREDAPRSRRLASSRGGRRPKRISKPSVSAFFTGPEELKDAAHSAALLAQLKSFYDARLLCDVTIEVVTPGSGPGTGRLFSCNRNVLAAACPYFKSMFTGGMYESQQASVTIHDVDAESFEVLVDYCYTGRVSLSEANVQRLYAASDMLQLEYVREACASFLARRLDLTNCTAILKFADAFDHHKLRSQAQSFIAHNFKQLSRMGSIREETLADLTLAQLLAVLRLDSLDVDSEKTVCHVAVQWLEAAPKERGPSAAEVFKCVRWAHFPAEDQDYLEGLLTKPIVKKYCQNIIEGALLQLRSGDGLQKSLVPVTSSSSSSSSSSSSSNSNSNSNSNSNSSNNKSTSSTVVPVEENPPHRLSMCAKRMIIFEHHKHPFLYSDPYFVEIYKVPSPLTFLAHNRIVTTLSSLVSPDHDICLCPAQERRMGV", "length": 430, "header": "tr|A0A9J7H9J7-1|A0A9J7H9J7_CRIGR Isoform 1 of Kelch repeat and BTB domain-containing protein 7-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC107977279 PE=4 SV=1 CANONICAL=A0A9J7H9J7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H9J7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9J7/entry#A0A9J7H9J7-1", "sequence": { "sequence": "MQSREDAPRSRRLASSRGGRRPKRISKPSVSAFFTGPEELKDAAHSAALLAQLKSFYDARLLCDVTIEVVTPGSGPGTGRLFSCNRNVLAAACPYFKSMFTGGMYESQQASVTIHDVDAESFEVLVDYCYTGRVSLSEANVQRLYAASDMLQLEYVREACASFLARRLDLTNCTAILKFADAFDHHKLRSQAQSFIAHNFKQLSRMGSIREETLADLTLAQLLAVLRLDSLDVDSEKTVCHVAVQWLEAAPKERGPSAAEVFKCVRWAHFPAEDQDYLEGLLTKPIVKKYCQNIIEGALLQLRSGDGLQKSLVPVTSSSSSSSSSSSSSNSNSNSNSNSNSSNNKSTSSTVVPVEENPPHRLSMCAKRMIIFEHHKHPFLYSDPYFVEIYKVPSPLTFLAHNRIVTTLSSLVSPDHDICLCPAQERRMGV", "length": 430, "header": "tr|A0A9J7H9J7-1|A0A9J7H9J7_CRIGR Isoform 1 of Kelch repeat and BTB domain-containing protein 7-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC107977279 PE=4 SV=1 CANONICAL=A0A9J7H9J7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HD68-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9J7/entry#A0A9J7HD68-1", "sequence": { "sequence": "MQSREDAPRSRRLASSRGGRRPKRISKPSVSAFFTGPEELKDAAHSAALLAQLKSFYDARLLCDVTIEVVTPGSGPGTGRLFSCNRNVLAAACPYFKSMFTGGMYESQQASVTIHDVDAESFEVLVDYCYTGRVSLSEANVQRLYAASDMLQLEYVREACASFLARRLDLTNCTAILKFADAFDHHKLRSQAQSFIAHNFKQLSRMGSIREETLADLTLAQLLAVLRLDSLDVDSEKTVCHVAVQWLEAAPKERGPSAAEVFKCVRWAHFPAEDQDYLEGLLTKPIVKKYCQNIIEGALLQLRSGDGLQKSLVPVTSSSSSSSSSSSSSNSNSNSNSNSNSSNNKSTSSTVVPVEENPPHRLTGVYPFCLESGQSFLAEEEAIPSEPSISWDLGRLGELVYDSGSSGSFYDDDFGL", "length": 416, "header": "tr|A0A9J7HD68-1|A0A9J7HD68_CRIGR Computationally mapped isoform of Kelch repeat and BTB domain-containing protein 6-like isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC107977279 PE=4 SV=1 CANONICAL=A0A9J7H9J7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HDE4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9J7/entry#A0A9J7HDE4-1", "sequence": { "sequence": "MQSREDAPRSRRLASSRGGRRPKRISKPSVSAFFTGPEELKDAAHSAALLAQLKSFYDARLLCDVTIEVVTPGSGPGTGRLFSCNRNVLAAACPYFKSMFTGGMYESQQASVTIHDVDAESFEVLVDYCYTGRVSLSEANVQRLYAASDMLQLEYVREACASFLARRLDLTNCTAILKFADAFDHHKLRSQAQSFIAHNFKQLSRMGSIREETLADLTLAQLLAVLRLDSLDVDSEKTVCHVAVQWLEAAPKERGPSAAEVFKCVRWAHFPAEDQDYLEGLLTKPIVKKYCQNIIEGALLQLRSGDGLQKSLVPVTSSSSSSSSSSSSSNSNSNSNSNSNSSNNKSTSSTVVPVEENPPHRLTGVYPFCLESGQSFLAEEEAIPSEPSISWDLVFIIQ", "length": 398, "header": "tr|A0A9J7HDE4-1|A0A9J7HDE4_CRIGR Computationally mapped isoform of Kelch repeat and BTB domain-containing protein 6-like isoform X5 OS=Cricetulus griseus OX=10029 GN=LOC107977279 PE=4 SV=1 CANONICAL=A0A9J7H9J7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KEY4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9J7/entry#A0A9J7KEY4-1", "sequence": { "sequence": "MQSREDAPRSRRLASSRGGRRPKRISKPSVSAFFTGPEELKDAAHSAALLAQLKSFYDARLLCDVTIEVVTPGSGPGTGRLFSCNRNVLAAACPYFKSMFTGGMYESQQASVTIHDVDAESFEVLVDYCYTGRVSLSEANVQRLYAASDMLQLEYVREACASFLARRLDLTNCTAILKFADAFDHHKLRSQAQSFIAHNFKQLSRMGSIREETLADLTLAQLLAVLRLDSLDVDSEKTVCHVAVQWLEAAPKERGPSAAEVFKCVRWAHFPAEDQDYLEGLLTKPIVKKYCQNIIEGALLQLRSGDGLQKSLVPVTSSSSSSSSSSSSSNSNSNSNSNSNSSNNKSTSSTVVPVEENPPHRLTGVYPFCLESGQSFLAEEEAIPSEPSISWDLVTEDRGMCSRMRN", "length": 406, "header": "tr|A0A9J7KEY4-1|A0A9J7H9J7_CRIGR Computationally mapped isoform of Kelch repeat and BTB domain-containing protein 7-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC107977279 PE=4 SV=1 CANONICAL=A0A9J7H9J7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KEY4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEY4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KEY4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEY4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:107977279", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:107977279", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H9J7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9J7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 172, "end_pos": 174, "annotation": "n_glycosylation_sequon" }, { "start_pos": 340, "end_pos": 342, "annotation": "n_glycosylation_sequon" }, { "start_pos": 344, "end_pos": 346, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7H9J7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9J7" }, { "id": "PS50097", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50097" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BTB", "eco_id": "ECO_0000259", "start_pos": 63, "end_pos": 138, "start_aa": "Cys", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 172, "end_pos": 174 }, { "start_pos": 340, "end_pos": 342 }, { "start_pos": 344, "end_pos": 346 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7H9J9-1", "uniprot_ac": "A0A9J7H9J9", "uniprot_id": "A0A9J7H9J9_CRIGR", "mass": { "chemical_mass": 46253.0, "monoisotopic_mass": 46253.0 }, "refseq": { "ac": "XP_035305834", "name": "A-kinase anchor protein 14", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305834" }, "gene_names": [ { "name": "Akap14", "type": "recommended", "evidence": [ { "id": "A0A9J7H9J9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9J9" } ] }, { "name": "Akap14", "type": "synonym", "evidence": [ { "id": "XP_035305834", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305834" } ] } ], "protein_names": [ { "name": "A-kinase anchor protein 14", "type": 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This record is derived from a genomic sequence (NC_048604.1) annotated using gene prediction method: Gnomon. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7H9T0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9T0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:118239416", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118239416", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], 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"table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7HA59-1", "uniprot_ac": "A0A9J7HA59", "uniprot_id": "A0A9J7HA59_CRIGR", "mass": { "chemical_mass": 73606.0, "monoisotopic_mass": 73606.0 }, "refseq": { "ac": "XP_035308265", "name": "protein CFAP20DC isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308265" }, "gene_names": [ { "name": "Cfap20dc", "type": "recommended", "evidence": [ { "id": "A0A9J7HA59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HA59" } ] }, { "name": "Cfap20dc", "type": "synonym", "evidence": [ { "id": "XP_035308265", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308265" } ] } ], "protein_names": [ { "name": "Protein CFAP20DC isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7HA59", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HA59/entry#names_and_taxonomy" } ] }, { "name": "protein CFAP20DC isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035308265", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308265" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035308265", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308265" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HA59", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HA59" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cfap20dc", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HA59", "locus": {} } ], "crossref": [ { "id": "A0A9J7HA59", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HA59", "database": "AlphaFoldDB", "categories": [] }, { "id": "113830637", "url": "https://www.ncbi.nlm.nih.gov/gene/113830637", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007714", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007714", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040441", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040441", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113830637", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113830637", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HA59", "url": "https://www.orthodb.org/?gene=A0A9J7HA59", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12458", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12458", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05018", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05018", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035308265", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308265", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7H9T1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9T1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H9T1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9T1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HA59", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HA59", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HA59-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HA59-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HAE7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAE7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HAE7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAE7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HAJ2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAJ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HAJ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAJ2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HCS7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCS7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HCS7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCS7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HDE8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDE8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HDE8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDE8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HDK6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDK6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HDK6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDK6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KF12", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KF12", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KF12-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KF12-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFKNEYQGGAFVEIFSAQGKNPGAKWKIFGSPSVIWKEFDKEVKSFVFILEGSSQTNRIQLPKENKQILGLIQRFLVLQIYLPLGQDFSTELLITDLGNIKRRLYLSTVHKELSSTPLHAKIPLFMIKRKIWCNLCIDLVAFTSEIFKGAVFQSLDGIIVSANCKLRKIFTLKSKPRETADKDDEPTDMIPRSCQLATDVPHVTQLLNMTKVCQTEIKFGGHRVQSAESDQFINKAGGSIRNSKSQDVCHIAFGSRVLGPPPPSGRRNNLRLSSETVRSVGYKNSQLCQQSSIEKHVNTAQVSGLLIPESEQQGEKGHDHQVKQAMPTSAGQRNNRRTHLKNTSGEKTEAHCGSASGNNWNEEEGATTLNSITQPLTEPVNSSTPEPQTPDQPDEWIFPESAALTSDPSCASQSVLLEGDSCMDSHLCLETSKDSEPDQAEESQMTPEDVFTFSSRPRSAPHGKNHDMSPKGHPFILNPKEDNGLTRRDAHLEDDFYGTDSSEEEYNWRNYQPSQMSECELQMLASLRRQQNEDLEDTGDPHGLSASQVDNCNVSISTSSDDTTTWNSCLPPPVNQGHHYQTEMNPSSPLNPRDWLTMLSPPIVPPSQQPAEQPLESSASASVQGEEDPSAEEDEEVLTLLYDPCLNCYFDPQTGKYYELV", "length": 661, "header": "tr|A0A9J7HA59-1|A0A9J7HA59_CRIGR Isoform 1 of Protein CFAP20DC isoform X2 OS=Cricetulus griseus OX=10029 GN=Cfap20dc PE=4 SV=1 CANONICAL=A0A9J7HA59-1" }, "isoforms": [ { "isoform_ac": "A0A9J7H9T1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HA59/entry#A0A9J7H9T1-1", "sequence": { "sequence": "MFKNEYQGGAFVEIFSAQGKNPGAKWKIFGSPSVIWKEFDKEVKSFVFILEGSSQTNRIQLPKENKQILGLIQRFLVLQIYLPLGQDFSTELLITDLGNIKRRLYLSTVHKELSSTPLHAKIPLFMIKRKIWCNLCIDLVAFTSEIFKGAVFQSLDGIIVSANCKLRKIFTLKSKPRETADKDDEPTDMIPRSCQLATDVPHVTQLLNMTKVCQTEIKFGGHRVQSAESDQFINKAGGSIRNSKSQDVCHIAFGSRVLGPPPPSGRRNNLRLSSETVRSVGYKNSQLCQQSSIEKHVNTAQVSGLLIPESEQQGEKGHDHQVKQAMPTSAGQRNNRRTHLKNTSGEKTEAHCDEWIFPESAALTSDPSCASQSVLLEGDSCMDSHLCLETSKDSEPDQAEESQMTPEDVFTFSSRPRSAPHGKNHDMSPKGHPFILNPKEDNGLTRRDAHLEDDFYGTDSSEEEYNWRNYQPSQMSECELQMLASLRRQQNEDLEDTGDPHGLSASQVDNCNVSISTSSDDTTTWNSCLPPPVNQGHHYQTEMNPSSPLNPRDWLTMLSPPIVPPSQQPAEQPLESSASASVQGEEDPSAEEDEEVLTLLYDPCLNCYFDPQTGKYYELV", "length": 620, "header": "tr|A0A9J7H9T1-1|A0A9J7HA59_CRIGR Computationally mapped isoform of Protein CFAP20DC isoform X2 OS=Cricetulus griseus OX=10029 GN=Cfap20dc PE=4 SV=1 CANONICAL=A0A9J7HA59-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HA59-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HA59/entry#A0A9J7HA59-1", "sequence": { "sequence": "MFKNEYQGGAFVEIFSAQGKNPGAKWKIFGSPSVIWKEFDKEVKSFVFILEGSSQTNRIQLPKENKQILGLIQRFLVLQIYLPLGQDFSTELLITDLGNIKRRLYLSTVHKELSSTPLHAKIPLFMIKRKIWCNLCIDLVAFTSEIFKGAVFQSLDGIIVSANCKLRKIFTLKSKPRETADKDDEPTDMIPRSCQLATDVPHVTQLLNMTKVCQTEIKFGGHRVQSAESDQFINKAGGSIRNSKSQDVCHIAFGSRVLGPPPPSGRRNNLRLSSETVRSVGYKNSQLCQQSSIEKHVNTAQVSGLLIPESEQQGEKGHDHQVKQAMPTSAGQRNNRRTHLKNTSGEKTEAHCGSASGNNWNEEEGATTLNSITQPLTEPVNSSTPEPQTPDQPDEWIFPESAALTSDPSCASQSVLLEGDSCMDSHLCLETSKDSEPDQAEESQMTPEDVFTFSSRPRSAPHGKNHDMSPKGHPFILNPKEDNGLTRRDAHLEDDFYGTDSSEEEYNWRNYQPSQMSECELQMLASLRRQQNEDLEDTGDPHGLSASQVDNCNVSISTSSDDTTTWNSCLPPPVNQGHHYQTEMNPSSPLNPRDWLTMLSPPIVPPSQQPAEQPLESSASASVQGEEDPSAEEDEEVLTLLYDPCLNCYFDPQTGKYYELV", "length": 661, "header": "tr|A0A9J7HA59-1|A0A9J7HA59_CRIGR Isoform 1 of Protein CFAP20DC isoform X2 OS=Cricetulus griseus OX=10029 GN=Cfap20dc PE=4 SV=1 CANONICAL=A0A9J7HA59-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HAE7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HA59/entry#A0A9J7HAE7-1", "sequence": { "sequence": "MFKNEYQGGAFVEIFSAQGKNPGAKWKIFGSPSVIWKEFDKEVKSFVFILEGSSQTNRIQLPKENKQILGLIQRFLVLQIYLPLGQDFSTELLITDLGNIKRRLYLSTVHKELSSTPLHAKIPLFMIKRKIWCNLCIDLVAFTSEIFKGAVFQSLDGIIVSANCKLRKIFTLKSKPRETADKDDEPTDMIPRSCQLATDVPHVTQLLNMTKVCQTEIKFGGHRVQSAESDQFINKAGGSIRNSKSQDVCHIAFGSRVLGPPPPSGRRNNLRLSSETVRSVGYKNSQLCQQSSIEKHVNTAQVSGLLIPESEQQGEKGHDHQVKQAMPTSGQRNNRRTHLKNTSGEKTEAHCGSASGNNWNEEEGATTLNSITQPLTEPVNSSTPEPQTPDQPDEWIFPESAALTSDPSCASQSVLLEGDSCMDSHLCLETSKDSEPDQAEESQMTPEDVFTFSSRPRSAPHGKNHDMSPKGHPFILNPKEDNGLTRRDAHLEDDFYGTDSSEEEYNWRNYQPSQMSECELQMLASLRRQQNEDLEDTGDPHGLSASQVDNCNVSISTSSDDTTTWNSCLPPPVNQGHHYQTEMNPSSPLNPRDWLTMLSPPIVPPSQQPAEQPLESSASASVQGEEDPSAEEDEEVLTLLYDPCLNCYFDPQTGKYYELV", "length": 660, "header": "tr|A0A9J7HAE7-1|A0A9J7HAE7_CRIGR Computationally mapped isoform of Protein CFAP20DC isoform X3 OS=Cricetulus griseus OX=10029 GN=Cfap20dc PE=4 SV=1 CANONICAL=A0A9J7HA59-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HAJ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HA59/entry#A0A9J7HAJ2-1", "sequence": { "sequence": "MILLSDEPTDMIPRSCQLATDVPHVTQLLNMTKVCQTEIKFGGHRVQSAESDQFINKAGGSIRNSKSQDVCHIAFGSRVLGPPPPSGRRNNLRLSSETVRSVGYKNSQLCQQSSIEKHVNTAQVSGLLIPESEQQGEKGHDHQVKQAMPTSAGQRNNRRTHLKNTSGEKTEAHCGSASGNNWNEEEGATTLNSITQPLTEPVNSSTPEPQTPDQPDEWIFPESAALTSDPSCASQSVLLEGDSCMDSHLCLETSKDSEPDQAEESQMTPEDVFTFSSRPRSAPHGKNHDMSPKGHPFILNPKEDNGLTRRDAHLEDDFYGTDSSEEEYNWRNYQPSQMSECELQMLASLRRQQNEDLEDTGDPHGLSASQVDNCNVSISTSSDDTTTWNSCLPPPVNQGHHYQTEMNPSSPLNPRDWLTMLSPPIVPPSQQPAEQPLESSASASVQGEEDPSAEEDEEVLTLLYDPCLNCYFDPQTGKYYELV", "length": 483, "header": "tr|A0A9J7HAJ2-1|A0A9J7HAJ2_CRIGR Computationally mapped isoform of Protein CFAP20DC isoform X9 OS=Cricetulus griseus OX=10029 GN=Cfap20dc PE=4 SV=1 CANONICAL=A0A9J7HA59-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HCS7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HA59/entry#A0A9J7HCS7-1", "sequence": { "sequence": "MKNEGWCNLCIDLVAFTSEIFKGAVFQSLDGIIVSANCKLRKIFTLKSKPRETADKDDEPTDMIPRSCQLATDVPHVTQLLNMTKVCQTEIKFGGHRVQSAESDQFINKAGGSIRNSKSQDVCHIAFGSRVLGPPPPSGRRNNLRLSSETVRSVGYKNSQLCQQSSIEKHVNTAQVSGLLIPESEQQGEKGHDHQVKQAMPTSAGQRNNRRTHLKNTSGEKTEAHCGSASGNNWNEEEGATTLNSITQPLTEPVNSSTPEPQTPDQPDEWIFPESAALTSDPSCASQSVLLEGDSCMDSHLCLETSKDSEPDQAEESQMTPEDVFTFSSRPRSAPHGKNHDMSPKGHPFILNPKEDNGLTRRDAHLEDDFYGTDSSEEEYNWRNYQPSQMSECELQMLASLRRQQNEDLEDTGDPHGLSASQVDNCNVSISTSSDDTTTWNSCLPPPVNQGHHYQTEMNPSSPLNPRDWLTMLSPPIVPPSQQPAEQPLESSASASVQGEEDPSAEEDEEVLTLLYDPCLNCYFDPQTGKYYELV", "length": 535, "header": "tr|A0A9J7HCS7-1|A0A9J7HCS7_CRIGR Computationally mapped isoform of Protein CFAP20DC isoform X8 OS=Cricetulus griseus OX=10029 GN=Cfap20dc PE=4 SV=1 CANONICAL=A0A9J7HA59-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HDE8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HA59/entry#A0A9J7HDE8-1", "sequence": { "sequence": "MFKNEYQGGAFVEIFSAQGKNPGAKWKIFGSPSVIWKEFDKEVKSFVFILEGSSQTNRIQLPKENKQILGLIQRFLVLQIYLPLGQDFSTELLITDLGNIKRRLYLSTVHKELSSTPLHAKIPLFMIKRKIWCNLCIDLVAFTSEIFKGAVFQSLDGIIVSANCKLRKIFTLKSKPRETADKDDEPTDMIPRSCQLATDVPHVTQLLNMTKVCQTEIKFGGHRVQSAESDQFINKAGGSIRNSKSQDVCHIAFGSRVLGPPPPSGRRNNLRLSSETVRSVGYKNSQLCQQSSIEKHVNTAQVSGLLIPESEQQGEKGHDHQVKQAMPTSGQRNNRRTHLKNTSGEKTEAHCDEWIFPESAALTSDPSCASQSVLLEGDSCMDSHLCLETSKDSEPDQAEESQMTPEDVFTFSSRPRSAPHGKNHDMSPKGHPFILNPKEDNGLTRRDAHLEDDFYGTDSSEEEYNWRNYQPSQMSECELQMLASLRRQQNEDLEDTGDPHGLSASQVDNCNVSISTSSDDTTTWNSCLPPPVNQGHHYQTEMNPSSPLNPRDWLTMLSPPIVPPSQQPAEQPLESSASASVQGEEDPSAEEDEEVLTLLYDPCLNCYFDPQTGKYYELV", "length": 619, "header": "tr|A0A9J7HDE8-1|A0A9J7HDE8_CRIGR Computationally mapped isoform of Protein CFAP20DC isoform X5 OS=Cricetulus griseus OX=10029 GN=Cfap20dc PE=4 SV=1 CANONICAL=A0A9J7HA59-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HDK6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HA59/entry#A0A9J7HDK6-1", "sequence": { "sequence": "MIKRKIWCNLCIDLVAFTSEIFKGAVFQSLDGIIVSANCKLRKIFTLKSKPRETADKDDEPTDMIPRSCQLATDVPHVTQLLNMTKVCQTEIKFGGHRVQSAESDQFINKAGGSIRNSKSQDVCHIAFGSRVLGPPPPSGRRNNLRLSSETVRSVGYKNSQLCQQSSIEKHVNTAQVSGLLIPESEQQGEKGHDHQVKQAMPTSAGQRNNRRTHLKNTSGEKTEAHCGSASGNNWNEEEGATTLNSITQPLTEPVNSSTPEPQTPDQPDEWIFPESAALTSDPSCASQSVLLEGDSCMDSHLCLETSKDSEPDQAEESQMTPEDVFTFSSRPRSAPHGKNHDMSPKGHPFILNPKEDNGLTRRDAHLEDDFYGTDSSEEEYNWRNYQPSQMSECELQMLASLRRQQNEDLEDTGDPHGLSASQVDNCNVSISTSSDDTTTWNSCLPPPVNQGHHYQTEMNPSSPLNPRDWLTMLSPPIVPPSQQPAEQPLESSASASVQGEEDPSAEEDEEVLTLLYDPCLNCYFDPQTGKYYELV", "length": 536, "header": "tr|A0A9J7HDK6-1|A0A9J7HDK6_CRIGR Computationally mapped isoform of Protein CFAP20DC isoform X7 OS=Cricetulus griseus OX=10029 GN=Cfap20dc PE=4 SV=1 CANONICAL=A0A9J7HA59-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KF12-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HA59/entry#A0A9J7KF12-1", "sequence": { "sequence": 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035305464", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305464" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HA26", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HA26" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Exoc3l2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HA26", "locus": {} } ], "crossref": [ { "id": "100754318", "url": "https://www.ncbi.nlm.nih.gov/gene/100754318", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR010326", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010326", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042532", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042532", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100754318", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754318", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HA26", "url": "https://www.orthodb.org/?gene=A0A9J7HA26", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21292", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21292", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21292:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21292:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06046", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06046", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035305464", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305464", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HA26", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HA26", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HA26-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HA26-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPILKSLGVGDPKVPRAGTLPLRSSRNPFEDSPALEEEAGQSGTLPNGTSCGRRATLEKLAGLAHFRLGWTSGRRAGSPGDGQGRSFLGRVLAPGIRRSSADFGLLTRLQGFRTHGDEEPAGEAARRLAFLRLGRGPKPRRASLAERVVPAGEAAPEPPPKVQEPPKMKEPLSVLEILGLIQKRELARADEHILELEAEAPAEAEAGAGRRARDVALLYEALQRELWALVREALAAPGXGAGAVAQLGRVLQQEEAADARRGPGXARKLRARWPEAVARAARAWRRRRRGGGGALAGQLEALRARLLEDVAAVRGRXAPAYPAGLRAGAVYLRGYHEALAEWLGAAARRRLPLADRYALLHWHHQVYPREILGLVDVVALENGELGPLLSAGTLRGLEDECVTDVKAQTRAALLRVLQEDEEQWGSMDYRPSNLAQDVCELLEEHTERAPHISQEFVERMAHCCLGGLAEFLQSFQQRVERFHENPGIREIPSETYISRTISLVNCGPPLRSLAERLARVGPPESEPAREASAIALDRVTRLCHRVLAELLFQELQPHFNKLMRRKWLSSSEALDGIVGTLGAQALALRRMQDEPYQVLVAELHRRALVEYVRPLLRGRLRCRSARTRSRVAGRLREDAAQLQRLFRRLESQASWLDQVVPHLAEILQLEDTPSIQVEVGVLVRDYPDIRRKHVAALLDVRGLRNTAARQEILAVARDLELSEGGTLSPPRDRTFFADIPVPRSSFCLGLPLFLGRLPVSRLARPRLACLPLRPRPASSLRARAQR", "length": 786, "header": "tr|A0A9J7HA26-1|A0A9J7HA26_CRIGR Isoform 1 of LOW QUALITY PROTEIN: exocyst complex component 3-like protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Exoc3l2 PE=3 SV=1 CANONICAL=A0A9J7HA26-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HA26-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HA26/entry#A0A9J7HA26-1", "sequence": { "sequence": "MPILKSLGVGDPKVPRAGTLPLRSSRNPFEDSPALEEEAGQSGTLPNGTSCGRRATLEKLAGLAHFRLGWTSGRRAGSPGDGQGRSFLGRVLAPGIRRSSADFGLLTRLQGFRTHGDEEPAGEAARRLAFLRLGRGPKPRRASLAERVVPAGEAAPEPPPKVQEPPKMKEPLSVLEILGLIQKRELARADEHILELEAEAPAEAEAGAGRRARDVALLYEALQRELWALVREALAAPGXGAGAVAQLGRVLQQEEAADARRGPGXARKLRARWPEAVARAARAWRRRRRGGGGALAGQLEALRARLLEDVAAVRGRXAPAYPAGLRAGAVYLRGYHEALAEWLGAAARRRLPLADRYALLHWHHQVYPREILGLVDVVALENGELGPLLSAGTLRGLEDECVTDVKAQTRAALLRVLQEDEEQWGSMDYRPSNLAQDVCELLEEHTERAPHISQEFVERMAHCCLGGLAEFLQSFQQRVERFHENPGIREIPSETYISRTISLVNCGPPLRSLAERLARVGPPESEPAREASAIALDRVTRLCHRVLAELLFQELQPHFNKLMRRKWLSSSEALDGIVGTLGAQALALRRMQDEPYQVLVAELHRRALVEYVRPLLRGRLRCRSARTRSRVAGRLREDAAQLQRLFRRLESQASWLDQVVPHLAEILQLEDTPSIQVEVGVLVRDYPDIRRKHVAALLDVRGLRNTAARQEILAVARDLELSEGGTLSPPRDRTFFADIPVPRSSFCLGLPLFLGRLPVSRLARPRLACLPLRPRPASSLRARAQR", "length": 786, "header": "tr|A0A9J7HA26-1|A0A9J7HA26_CRIGR Isoform 1 of LOW QUALITY PROTEIN: exocyst complex component 3-like protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Exoc3l2 PE=3 SV=1 CANONICAL=A0A9J7HA26-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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computational analysis. 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This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035307595", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307595" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HA46", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HA46" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "CUNH1orf68", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HA46", "locus": {} } ], "crossref": [ { "id": "A0A9J7HA46", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HA46", "database": "AlphaFoldDB", "categories": [] }, { "id": "100756558", "url": "https://www.ncbi.nlm.nih.gov/gene/100756558", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:100756558", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756558", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HA46", "url": "https://www.orthodb.org/?gene=A0A9J7HA46", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "XP_035307595", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307595", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HA46", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HA46", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HA46-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HA46-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KB93", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KB93", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KB93-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KB93-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MCDQQKQPQFLPSCVKGSGLGAGQGSSGTLGKGQVSGPVQTVYAPGPALYQPQTIVRYSAPVPAPAYVKYQVPCQTKTYVKCPAPCQTYVKCPAPCQTTYVKCPAPCQTTCVKCPAPCQTQTYYVQYAVPTQTYYTQASSSGSGSQGGVPDPCSAPCSMSYCCLAPRTFGVSPLRRWVQRPQGWNTGSSSCCEDSGCCGSGGCGSGGCGSGGCGGCGSGGCGGCGCGSGCCCLGIIPMRSRGPACCDSGDDCCC", "length": 254, "header": "tr|A0A9J7HA46-1|A0A9J7HA46_CRIGR Isoform 1 of Skin-specific protein 32 isoform X1 OS=Cricetulus griseus OX=10029 GN=CUNH1orf68 PE=4 SV=1 CANONICAL=A0A9J7HA46-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HA46-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HA46/entry#A0A9J7HA46-1", "sequence": { "sequence": "MCDQQKQPQFLPSCVKGSGLGAGQGSSGTLGKGQVSGPVQTVYAPGPALYQPQTIVRYSAPVPAPAYVKYQVPCQTKTYVKCPAPCQTYVKCPAPCQTTYVKCPAPCQTTCVKCPAPCQTQTYYVQYAVPTQTYYTQASSSGSGSQGGVPDPCSAPCSMSYCCLAPRTFGVSPLRRWVQRPQGWNTGSSSCCEDSGCCGSGGCGSGGCGSGGCGGCGSGGCGGCGCGSGCCCLGIIPMRSRGPACCDSGDDCCC", "length": 254, "header": "tr|A0A9J7HA46-1|A0A9J7HA46_CRIGR Isoform 1 of Skin-specific protein 32 isoform X1 OS=Cricetulus griseus OX=10029 GN=CUNH1orf68 PE=4 SV=1 CANONICAL=A0A9J7HA46-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KB93-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HA46/entry#A0A9J7KB93-1", "sequence": { "sequence": "MCDQQKQPQFLPSCVKGSGLGAGQGSSGTLGKGQVSGQPQTIVRYSAPVPAPAYVKYQVPCQTKTYVKCPAPCQTYVKCPAPCQTTYVKCPAPCQTTCVKCPAPCQTQTYYVQYAVPTQTYYTQASSSGSGSQGGVPDPCSAPCSMSYCCLAPRTFGVSPLRRWVQRPQGWNTGSSSCCEDSGCCGSGGCCGSGGCGGCGCGSGCCCLGIIPMRSRGPACCDSGDDCCC", "length": 229, "header": "tr|A0A9J7KB93-1|A0A9J7HA46_CRIGR Computationally mapped isoform of Skin-specific protein 32 isoform X1 OS=Cricetulus griseus OX=10029 GN=CUNH1orf68 PE=4 SV=1 CANONICAL=A0A9J7HA46-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KB93", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KB93" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KB93", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KB93" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100756558", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756558", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7HAC5-1", "uniprot_ac": "A0A9J7HAC5", "uniprot_id": "A0A9J7HAC5_CRIGR", "mass": { "chemical_mass": 195099.0, "monoisotopic_mass": 195099.0 }, "refseq": { "ac": "XP_035305599", "name": "acrosomal protein KIAA1210 homolog isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305599" }, "gene_names": [ { "name": "Kiaa1210", "type": "recommended", "evidence": [ { "id": "A0A9J7HAC5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAC5" } ] }, { "name": "Kiaa1210", "type": "synonym", "evidence": [ { "id": "XP_035305599", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305599" } ] } ], "protein_names": [ { "name": "Acrosomal protein KIAA1210 homolog isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7HAC5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAC5/entry#names_and_taxonomy" } ] }, { "name": "acrosomal protein KIAA1210 homolog isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035305599", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305599" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 12% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048604.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035305599", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305599" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HAC5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAC5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Kiaa1210", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAC5", "locus": {} } ], "crossref": [ { "id": "118239379", "url": "https://www.ncbi.nlm.nih.gov/gene/118239379", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026713", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026713", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028030", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028030", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:118239379", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118239379", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HAC5", "url": "https://www.orthodb.org/?gene=A0A9J7HAC5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47743", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47743", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47743:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47743:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15262", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15262", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035305599", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305599", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HAC5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAC5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HAC5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAC5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAESLSEVSSSMEGLEGSEEGKKKSKFKAFRNFFGKKKKKEPEDIMERRGLKPRFTSTMKPVLEAQAVEHKPKSSMGSKAISHDSVFGLEPEPEKSASKLLSSPETQRTRSRKIPPLRSRKLSVSPTVVRSEKVSKDLETVDDKTTMSSKRMSSSHCSSITRKSTSELSSDLDLSQSSLSSTQQLSGFSMPATSQGCLDSSAAKHKIAVNPRKQKRKKAISLSARTKQEEQHAVTETKEKATIKPKQADVKEKKDSTGPPSQEQSNKTETQDKKTRDQTLSTDAASSTGHSTSESHPRRRRRRVKNEWGIIEKSLVKSTQEHDWGSKAESSPSEELAGREHSFLKLYLEKQGTEQITTAEGTTPREMPSDKRNVKGKMADRDVEAQRTPAPRPTDVAESRVSGPPPSHEERSSEIKKKKDKAALLSQTRGSSTSQEEAPVSRTVEAQEHKPLCQVRGEGKETPKVDSQKLQPQMELSLERTTYHKERNLRGSLRAFSASVSSATTADDASMHMSPLPLRRWPNAGTISSDSKSTSEYESSSEVQPSLAHSFQHAWNPQDDDDVFLKSENVDAEGNKTEQSLAKARELPLDTNSSSEGQESCEEMTSAQSSQSFEVYEECLESGSFIIDSVSGEQLASRRHSETFQESEEKEVSTESSSYFDKYQSSEYLTSSEEELPPERSKQAQGQCRDQQEVSPVSRSVPKELSVSDKTVHSLYTSPLIVSPITQQQSPISVAQIRPVQPLPPSHTVRSWGSPQSEHQVFADPEGIAADWDIFIQPPSRPVLEQHTCAGPEIAVFEECTATQPGRYPSQSSMRRSMKKEIPLGAESAAFEGSHFLEPLPPVSMEPLPPQHHSQTPSKPFIQHQASAFERGVCVDPRLMGHPFQAWKQSFSTLESTAFEGNPSMEHVPPTLPQSIQQPYQNAPLESEAVAAKIISMGPLHTQFSAQSLLNPQSQLFSESTSVQGATLAELLPSQPSVKTKFQPQMTRGNVPASWAIPVYAPAPRMPSQPSMGSIISMEPMSARHPLQPWPPSPFEQVSASPDRAATPAWGIPLEPPAPRMLSQPLMGTVVQQPVSTELDSISVPQSCTVELMPSRFPFQPRVDPESYGAEEGVSVIMRSVRHHSQPPISTGFKEDISLDSMRVPGEWGIPIEPLPSKYAPQQWLGPEFEQQTSSLEGVAQEGGISKEAWLSRNPSQTVIKPQVQKTPSSFEGTSMEGGIPWKPLPAKAPIQFLTRSKVQEMSSHPESAVTPGSTKKAWDSRASSQSLVKFMAEQIFSESSVGETDIYAKPTFRTRSRPSRSLLKPKLEEQAFLYNWDDEPKEDTLKNLLMRQSSQSPRRPEEPQEGLSYSEGTPVKWSSAAMDVSQSLGKLEYRQKVSASASFPEEWKRSEGQLSFTQPSQAFDVSETLSTESANVEWSHPEEHQPPGQPFLITDYQQQVYLSSVNAAAGGIVSPKNTGSWSMPKCPDSPKKTMKYPQGYEDFIKSTSTSVTKPSKHTTVPAQKAFVSPGACSTEEGPQSREGGESPSSTSKAEVENVFGVRLRRISQKSGLENPDPFMPVLPASKESMNKGAPQGISGGLEKLSQTVSYAEKQGNRSKYEGTFKKPAIYRPPEKIGSWKADCTAEPAWINVAKQRQKGFVSQFPKKTKTRTEIKAEMKEPRYESKYDPNSEIPPKEEEPTTDVPSRMTSSSSVTRQEMPKLSKSIKSVGFDDQNMLHPQGKERETRRSSSLPPKFSPPEEPVWFSMAKKKAQAWSQMTENMQ", "length": 1764, "header": "tr|A0A9J7HAC5-1|A0A9J7HAC5_CRIGR Isoform 1 of Acrosomal protein KIAA1210 homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=Kiaa1210 PE=4 SV=1 CANONICAL=A0A9J7HAC5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HAC5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAC5/entry#A0A9J7HAC5-1", "sequence": { "sequence": "MAESLSEVSSSMEGLEGSEEGKKKSKFKAFRNFFGKKKKKEPEDIMERRGLKPRFTSTMKPVLEAQAVEHKPKSSMGSKAISHDSVFGLEPEPEKSASKLLSSPETQRTRSRKIPPLRSRKLSVSPTVVRSEKVSKDLETVDDKTTMSSKRMSSSHCSSITRKSTSELSSDLDLSQSSLSSTQQLSGFSMPATSQGCLDSSAAKHKIAVNPRKQKRKKAISLSARTKQEEQHAVTETKEKATIKPKQADVKEKKDSTGPPSQEQSNKTETQDKKTRDQTLSTDAASSTGHSTSESHPRRRRRRVKNEWGIIEKSLVKSTQEHDWGSKAESSPSEELAGREHSFLKLYLEKQGTEQITTAEGTTPREMPSDKRNVKGKMADRDVEAQRTPAPRPTDVAESRVSGPPPSHEERSSEIKKKKDKAALLSQTRGSSTSQEEAPVSRTVEAQEHKPLCQVRGEGKETPKVDSQKLQPQMELSLERTTYHKERNLRGSLRAFSASVSSATTADDASMHMSPLPLRRWPNAGTISSDSKSTSEYESSSEVQPSLAHSFQHAWNPQDDDDVFLKSENVDAEGNKTEQSLAKARELPLDTNSSSEGQESCEEMTSAQSSQSFEVYEECLESGSFIIDSVSGEQLASRRHSETFQESEEKEVSTESSSYFDKYQSSEYLTSSEEELPPERSKQAQGQCRDQQEVSPVSRSVPKELSVSDKTVHSLYTSPLIVSPITQQQSPISVAQIRPVQPLPPSHTVRSWGSPQSEHQVFADPEGIAADWDIFIQPPSRPVLEQHTCAGPEIAVFEECTATQPGRYPSQSSMRRSMKKEIPLGAESAAFEGSHFLEPLPPVSMEPLPPQHHSQTPSKPFIQHQASAFERGVCVDPRLMGHPFQAWKQSFSTLESTAFEGNPSMEHVPPTLPQSIQQPYQNAPLESEAVAAKIISMGPLHTQFSAQSLLNPQSQLFSESTSVQGATLAELLPSQPSVKTKFQPQMTRGNVPASWAIPVYAPAPRMPSQPSMGSIISMEPMSARHPLQPWPPSPFEQVSASPDRAATPAWGIPLEPPAPRMLSQPLMGTVVQQPVSTELDSISVPQSCTVELMPSRFPFQPRVDPESYGAEEGVSVIMRSVRHHSQPPISTGFKEDISLDSMRVPGEWGIPIEPLPSKYAPQQWLGPEFEQQTSSLEGVAQEGGISKEAWLSRNPSQTVIKPQVQKTPSSFEGTSMEGGIPWKPLPAKAPIQFLTRSKVQEMSSHPESAVTPGSTKKAWDSRASSQSLVKFMAEQIFSESSVGETDIYAKPTFRTRSRPSRSLLKPKLEEQAFLYNWDDEPKEDTLKNLLMRQSSQSPRRPEEPQEGLSYSEGTPVKWSSAAMDVSQSLGKLEYRQKVSASASFPEEWKRSEGQLSFTQPSQAFDVSETLSTESANVEWSHPEEHQPPGQPFLITDYQQQVYLSSVNAAAGGIVSPKNTGSWSMPKCPDSPKKTMKYPQGYEDFIKSTSTSVTKPSKHTTVPAQKAFVSPGACSTEEGPQSREGGESPSSTSKAEVENVFGVRLRRISQKSGLENPDPFMPVLPASKESMNKGAPQGISGGLEKLSQTVSYAEKQGNRSKYEGTFKKPAIYRPPEKIGSWKADCTAEPAWINVAKQRQKGFVSQFPKKTKTRTEIKAEMKEPRYESKYDPNSEIPPKEEEPTTDVPSRMTSSSSVTRQEMPKLSKSIKSVGFDDQNMLHPQGKERETRRSSSLPPKFSPPEEPVWFSMAKKKAQAWSQMTENMQ", 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035307760", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307760" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HAD8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAD8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Dcst2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAD8", "locus": {} } ], "crossref": [ { "id": "A0A9J7HAD8", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HAD8", "database": "AlphaFoldDB", "categories": [] }, { "id": "100774289", "url": "https://www.ncbi.nlm.nih.gov/gene/100774289", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR012858", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012858", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051856", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051856", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058842", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058842", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100774289", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774289", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HAD8", "url": "https://www.orthodb.org/?gene=A0A9J7HAD8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21041", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21041", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21041:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21041:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07782", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07782", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF26037", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26037", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF26039", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26039", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035307760", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307760", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HAD8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAD8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HAD8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAD8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTVVCVLQLPSSVSPQNWVMGSGGTLELDEEFRVCRIWGPLVETHWHLVPAAMSKIDDVKWPSLEEGQSMARAVVRSMGGFTLGLSLATAYGLLELLVEGHSPYACLVATVTLAAFLSLGMGFSRQVRVTVFLLLPQAFSRQGRMLLLVAAFGLVLQGPCTNTLRNFTRASEAVACGAELALNQTAEVLERAKQPLVSALTKIKAIAQRAKMVADQVRRFFRSIMDGVKHVARSLRNVWYWLLHIGDVCNSELGNPFTKCSGVFDDAKDNCMKIMPHVHHLCYVLMPFKLVLCGLASLVQMFCVIPSYIQFFLRKTISTPVMKLLNKVRREFEFNVTATHYFSVDLNASRSLSQVALDLHEAVSTKLHSVREVLALMGYTMPLLFALLYLQALWYRYCYLYRDNFDNIYITSRFLRMEAVRSKAGLPTVLPLSSYEARHYIQPGSIFLSRWEQFFYMLETFGFARHLLLMFLLVFLDYAVFWVLDLARYHLQGEIVARSPVLVSITVEGTGYSGSIFRDLVSAFDILQQGNISILSRRCLLHPSEPDATGYIVIGTMYGLCFFVTLFGSYVSRLRRVICASYYPFREQERISYLYNVLLSRRTNILAAVHRAVTRRAADQGHMSVLQVLAIRCSCLSPWLSQFLLHPRYCLGCGQPEDTGSMENFVSCSTPGCKGLYCPACFSLLDNTCTLCASPLSIPGHLDLELDSSDDEEGPQLWLAAVHRRSPEQELELRQQLQEALDKSLSDTSDSSHSEFRDQDALKEAPAAFPSSSGLLAPPETQ", "length": 782, "header": "tr|A0A9J7HAD8-1|A0A9J7HAD8_CRIGR Isoform 1 of DC-STAMP domain-containing protein 2 OS=Cricetulus griseus OX=10029 GN=Dcst2 PE=4 SV=1 CANONICAL=A0A9J7HAD8-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HAD8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAD8/entry#A0A9J7HAD8-1", "sequence": { "sequence": "MTVVCVLQLPSSVSPQNWVMGSGGTLELDEEFRVCRIWGPLVETHWHLVPAAMSKIDDVKWPSLEEGQSMARAVVRSMGGFTLGLSLATAYGLLELLVEGHSPYACLVATVTLAAFLSLGMGFSRQVRVTVFLLLPQAFSRQGRMLLLVAAFGLVLQGPCTNTLRNFTRASEAVACGAELALNQTAEVLERAKQPLVSALTKIKAIAQRAKMVADQVRRFFRSIMDGVKHVARSLRNVWYWLLHIGDVCNSELGNPFTKCSGVFDDAKDNCMKIMPHVHHLCYVLMPFKLVLCGLASLVQMFCVIPSYIQFFLRKTISTPVMKLLNKVRREFEFNVTATHYFSVDLNASRSLSQVALDLHEAVSTKLHSVREVLALMGYTMPLLFALLYLQALWYRYCYLYRDNFDNIYITSRFLRMEAVRSKAGLPTVLPLSSYEARHYIQPGSIFLSRWEQFFYMLETFGFARHLLLMFLLVFLDYAVFWVLDLARYHLQGEIVARSPVLVSITVEGTGYSGSIFRDLVSAFDILQQGNISILSRRCLLHPSEPDATGYIVIGTMYGLCFFVTLFGSYVSRLRRVICASYYPFREQERISYLYNVLLSRRTNILAAVHRAVTRRAADQGHMSVLQVLAIRCSCLSPWLSQFLLHPRYCLGCGQPEDTGSMENFVSCSTPGCKGLYCPACFSLLDNTCTLCASPLSIPGHLDLELDSSDDEEGPQLWLAAVHRRSPEQELELRQQLQEALDKSLSDTSDSSHSEFRDQDALKEAPAAFPSSSGLLAPPETQ", "length": 782, "header": "tr|A0A9J7HAD8-1|A0A9J7HAD8_CRIGR Isoform 1 of DC-STAMP domain-containing protein 2 OS=Cricetulus griseus OX=10029 GN=Dcst2 PE=4 SV=1 CANONICAL=A0A9J7HAD8-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 614, "start_aa": "Thr", "end_pos": 614, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr614", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 670, "start_aa": "Thr", "end_pos": 670, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr670", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HAD8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAD8" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HAD8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAD8" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100774289", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774289", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HAD8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAD8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 166, "end_pos": 168, "annotation": "n_glycosylation_sequon" }, { "start_pos": 183, "end_pos": 185, "annotation": "n_glycosylation_sequon" }, { "start_pos": 335, "end_pos": 337, "annotation": "n_glycosylation_sequon" }, { "start_pos": 347, "end_pos": 349, "annotation": "n_glycosylation_sequon" }, { "start_pos": 531, "end_pos": 533, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7HAD8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAD8" }, { "id": "PF07782", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07782" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Dendritic cell-specific transmembrane protein-like", "eco_id": "ECO_0000259", "start_pos": 405, "end_pos": 595, "start_aa": "Phe", "end_aa": "Tyr", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7HAD8", "database": "UniProtKB", "url": 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}, { "name": "LOC100766708", "type": "synonym", "evidence": [ { "id": "XP_035305629", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305629" } ] } ], "protein_names": [ { "name": "Transcription factor SPT20 homolog", "type": "synonym", "evidence": [ { "id": "A0A9J7HAD9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAD9/entry#names_and_taxonomy" } ] }, { "name": "transcription factor SPT20 homolog", "type": "synonym", "evidence": [ { "id": "XP_035305629", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305629" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; 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This record is derived from a genomic sequence (NC_048604.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035305629", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305629" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HAD9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAD9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100766708", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAD9", "locus": {} } ], "crossref": [ { "id": "A0A9J7HAD9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HAD9", "database": "AlphaFoldDB", "categories": [] }, { "id": "100766708", "url": "https://www.ncbi.nlm.nih.gov/gene/100766708", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": 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"A0A9J7HAH7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAH7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HAH7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAH7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATAAGGAGCPPPPPPNNNNNNNKSKSPRNGGRRRRNRRQSRNSDSDPELQGATADPSFFLDEDCLEYLPEKFDGNPDALTPFIAQCQVFMEKSSRDFSVDRTRVCFVTSMLHGRAARWATAKLERCNYLMNNYRAFMLELKHVFEDPQRREAAKRKIRRLRQGAGTVSEYAGIFQSVAQDLDWDESSLVDQFLEGLNQQIHQELSRRSEVPTNLNDLIRLCIHIERRLVRLAAEAASRPRDPPRGLGLPLPQSSQSDPTEPVGGARMRLTQEEKERRRKLNLCLYCGNGGHYADNCPAKGNNNRNSPXGKLPGPAVEGRAATGPERTRSPTPEAPTSHLQVMLQIHIPGRNTLFVRAMIDSGASGNFIDQEYVIQNAIPLRIKEWPIMVEAIDGHPIASGPIVLETHHLIVDLGDHREILSFDVTQSPFFPIVLGVRWLSTHDPHITWSTRSIVFNSDYCRFYCRMYSQIPPPMLLPVPHPPHLPFFYHVDGYRVYQPVRYYYVQNVYTPVDEHAYPGHRLVDPHIEMIPGAHSLPSGHVYSLSESEMAALRDFVDRNVKNGLMTPTVAPNGAQVLQVKRGWKLQVTYNCRAPHNCTVQNQYHRMSLPNMEDQAHLATYGEFVPHGHGGYHHHHHHPHHHHAPAYATFAGHHLMFAWYPVGRDVHGRVIFMPFVVTWCPHGYHHHPLPVPQYPPPQPPPPPPPPPPPPPPPPSYSTL", "length": 718, "header": "tr|A0A9J7HAH7-1|A0A9J7HAH7_CRIGR Isoform 1 of LOW QUALITY PROTEIN: retrotransposon-derived protein PEG10 isoform X2 OS=Cricetulus griseus OX=10029 GN=Peg10 PE=4 SV=1 CANONICAL=A0A9J7HAH7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HAH7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAH7/entry#A0A9J7HAH7-1", "sequence": { "sequence": "MATAAGGAGCPPPPPPNNNNNNNKSKSPRNGGRRRRNRRQSRNSDSDPELQGATADPSFFLDEDCLEYLPEKFDGNPDALTPFIAQCQVFMEKSSRDFSVDRTRVCFVTSMLHGRAARWATAKLERCNYLMNNYRAFMLELKHVFEDPQRREAAKRKIRRLRQGAGTVSEYAGIFQSVAQDLDWDESSLVDQFLEGLNQQIHQELSRRSEVPTNLNDLIRLCIHIERRLVRLAAEAASRPRDPPRGLGLPLPQSSQSDPTEPVGGARMRLTQEEKERRRKLNLCLYCGNGGHYADNCPAKGNNNRNSPXGKLPGPAVEGRAATGPERTRSPTPEAPTSHLQVMLQIHIPGRNTLFVRAMIDSGASGNFIDQEYVIQNAIPLRIKEWPIMVEAIDGHPIASGPIVLETHHLIVDLGDHREILSFDVTQSPFFPIVLGVRWLSTHDPHITWSTRSIVFNSDYCRFYCRMYSQIPPPMLLPVPHPPHLPFFYHVDGYRVYQPVRYYYVQNVYTPVDEHAYPGHRLVDPHIEMIPGAHSLPSGHVYSLSESEMAALRDFVDRNVKNGLMTPTVAPNGAQVLQVKRGWKLQVTYNCRAPHNCTVQNQYHRMSLPNMEDQAHLATYGEFVPHGHGGYHHHHHHPHHHHAPAYATFAGHHLMFAWYPVGRDVHGRVIFMPFVVTWCPHGYHHHPLPVPQYPPPQPPPPPPPPPPPPPPPPSYSTL", "length": 718, "header": "tr|A0A9J7HAH7-1|A0A9J7HAH7_CRIGR Isoform 1 of LOW QUALITY PROTEIN: retrotransposon-derived protein PEG10 isoform X2 OS=Cricetulus griseus OX=10029 GN=Peg10 PE=4 SV=1 CANONICAL=A0A9J7HAH7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HAH7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAH7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HAH7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAH7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100763982", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763982", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HAH7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAH7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HAH7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAH7" } ], "pmid": "" }, { "name": "nucleic acid binding", "id": "GO:0003676", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003676", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HAH7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAH7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 23, "end_pos": 25, "annotation": "n_glycosylation_sequon" }, { "start_pos": 596, "end_pos": 598, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7HAH7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAH7" }, { "id": "PS50158", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50158" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CCHC-type", "eco_id": "ECO_0000259", "start_pos": 284, "end_pos": 298, "start_aa": "Cys", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 23, "end_pos": 25 }, { "start_pos": 596, "end_pos": 598 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7HCR9-1", "uniprot_ac": "A0A9J7HCR9", "uniprot_id": "A0A9J7HCR9_CRIGR", "mass": { "chemical_mass": 66728.0, "monoisotopic_mass": 66728.0 }, "refseq": { "ac": "XP_035308256", "name": "ankyrin repeat and SOCS box protein 14 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308256" }, "gene_names": [ { "name": "Asb14", "type": "recommended", "evidence": [ { "id": "A0A9J7HCR9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCR9" } ] }, { "name": "Asb14", "type": "synonym", "evidence": [ { "id": "XP_035308256", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308256" } ] } ], "protein_names": [ { "name": "Ankyrin repeat and SOCS box protein 14 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7HCR9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCR9/entry#names_and_taxonomy" } ] }, { "name": "ankyrin repeat and SOCS box protein 14 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_035308256", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308256" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035308256", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308256" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCR9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCR9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Asb14", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCR9", "locus": {} } ], "crossref": [ { "id": "A0A9J7HCR9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HCR9", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd03730", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03730", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100751033", "url": "https://www.ncbi.nlm.nih.gov/gene/100751033", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001496", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001496", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036036", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036036", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050889", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050889", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100751033", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751033", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HCR9", "url": "https://www.orthodb.org/?gene=A0A9J7HCR9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24166", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24166", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24166:SF48", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24166:SF48", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24198", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24198", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24198:SF176", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24198:SF176", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07525", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07525", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035308256", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308256", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HAI1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAI1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HAI1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAI1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HCR9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCR9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HCR9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCR9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HEN0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HEN0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HEN0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HEN0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDNSNSDEDTDTDFDTQLIIQQSLLDIYKPGITQHTSEDKRSHFFLSADHKKIVEAIETVKYSSYFPFHEDALAHLTNCHSAFDEANGDGWLPLHKAAVQLNKNILEITLKASKPGKWEHTTHNGETPLFLAVSSSLLENVHFLLLNGCNPNAKNLEGNSPLLTAVLKDSYDMATLLISHGADVNLRCANERTALHEAAKLGRRDMVKLMLTSGAHPDARSSYGFTPLALAAQSGHTEIMELLLQKGKGADVHSQASDCSSILLEAVRGGNPDSVTLLLEYGADANIPKSSGHLPIHVAADKGHLLALKMLVPVTDIAAIKRSGISPIHCAAAGAHPQCLELLIQAGFDVNFMLDQRIRKYYDDQRKSALYFAVSNGDLSSVKLLLSAGALPNQDPVNCLQIALRMGNYELISLLLRHGANVNYFCRVNPLHFPSALQYSLKDEVMLRMLLNYGYDTERCFDCPHGDRIHRPCTFEGWTSTVIKDTMFCEVITLSWLQHLSGKVVRVMLDYVDQVQICSKLKAVLEKQKLWSEIHFILTNPRSLKHLCRLKIRKCMGRLRLRCPVFMSFLPLPKRLKAYVLYEEYDLYGQESFTGTW", "length": 597, "header": "tr|A0A9J7HCR9-1|A0A9J7HCR9_CRIGR Isoform 1 of Ankyrin repeat and SOCS box protein 14 isoform X1 OS=Cricetulus griseus OX=10029 GN=Asb14 PE=3 SV=1 CANONICAL=A0A9J7HCR9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HAI1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCR9/entry#A0A9J7HAI1-1", "sequence": { "sequence": "MDNSNSDEDTDTDFDTQLIIQQSLLDIYKPGITQHTSEDKRSHFFLSADHKKIVEAIETVGKEDALAHLTNCHSAFDEANGDGWLPLHKAAVQLNKNILEITLKASKPGKWEHTTHNGETPLFLAVSSSLLENVHFLLLNGCNPNAKNLEGNSPLLTAVLKDSYDMATLLISHGADVNLRCANERTALHEAAKLGRRDMVKLMLTSGAHPDARSSYGFTPLALAAQSGHTEIMELLLQKGKVQCLASDCSSILLEAVRGGNPDSVTLLLEYGADANIPKSSGHLPIHVAADKGHLLALKMLVPVTDIAAIKRSGISPIHCAAAGAHPQCLELLIQAGFDVNFMLDQRIRKYYDDQRKSALYFAVSNGDLSSVKLLLSAGALPNQDPVNCLQIALRMGNYELISLLLRHGANVNYFCRVNPLHFPSALQYSLKDEVMLRMLLNYGYDTERCFDCPHGDRIHRPCTFEGWTSTVIKDTMFCEVITLSWLQHLSGKVVRVMLDYVDQVQICSKLKAVLEKQKLWSEIHFILTNPRSLKHLCRLKIRKCMGRLRLRCPVFMSFLPLPKRLKAYVLYEEYDLYGQESFTGTW", "length": 587, "header": "tr|A0A9J7HAI1-1|A0A9J7HCR9_CRIGR Computationally mapped isoform of Ankyrin repeat and SOCS box protein 14 isoform X1 OS=Cricetulus griseus OX=10029 GN=Asb14 PE=3 SV=1 CANONICAL=A0A9J7HCR9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HCR9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCR9/entry#A0A9J7HCR9-1", "sequence": { "sequence": "MDNSNSDEDTDTDFDTQLIIQQSLLDIYKPGITQHTSEDKRSHFFLSADHKKIVEAIETVKYSSYFPFHEDALAHLTNCHSAFDEANGDGWLPLHKAAVQLNKNILEITLKASKPGKWEHTTHNGETPLFLAVSSSLLENVHFLLLNGCNPNAKNLEGNSPLLTAVLKDSYDMATLLISHGADVNLRCANERTALHEAAKLGRRDMVKLMLTSGAHPDARSSYGFTPLALAAQSGHTEIMELLLQKGKGADVHSQASDCSSILLEAVRGGNPDSVTLLLEYGADANIPKSSGHLPIHVAADKGHLLALKMLVPVTDIAAIKRSGISPIHCAAAGAHPQCLELLIQAGFDVNFMLDQRIRKYYDDQRKSALYFAVSNGDLSSVKLLLSAGALPNQDPVNCLQIALRMGNYELISLLLRHGANVNYFCRVNPLHFPSALQYSLKDEVMLRMLLNYGYDTERCFDCPHGDRIHRPCTFEGWTSTVIKDTMFCEVITLSWLQHLSGKVVRVMLDYVDQVQICSKLKAVLEKQKLWSEIHFILTNPRSLKHLCRLKIRKCMGRLRLRCPVFMSFLPLPKRLKAYVLYEEYDLYGQESFTGTW", "length": 597, "header": "tr|A0A9J7HCR9-1|A0A9J7HCR9_CRIGR Isoform 1 of Ankyrin repeat and SOCS box protein 14 isoform X1 OS=Cricetulus griseus OX=10029 GN=Asb14 PE=3 SV=1 CANONICAL=A0A9J7HCR9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HEN0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCR9/entry#A0A9J7HEN0-1", "sequence": { "sequence": "MDNSNSDEDTDTDFDTQLIIQQSLLDIYKPGITQHTSEDKRSHFFLSADHKKIVEAIETGKEDALAHLTNCHSAFDEANGDGWLPLHKAAVQLNKNILEITLKASKPGKWEHTTHNGETPLFLAVSSSLLENVHFLLLNGCNPNAKNLEGNSPLLTAVLKDSYDMATLLISHGADVNLRCANERTALHEAAKLGRRDMVKLMLTSGAHPDARSSYGFTPLALAAQSGHTEIMELLLQKGADVHSQASDCSSILLEAVRGGNPDSVTLLLEYGADANIPKSSGHLPIHVAADKGHLLALKMLVPVTDIAAIKRSGISPIHCAAAGAHPQCLELLIQAGFDVNFMLDQRIRKYYDDQRKSALYFAVSNGDLSSVKLLLSAGALPNQDPVNCLQIALRMGNYELISLLLRHGANVNYFCRVNPLHFPSALQYSLKDEVMLRMLLNYGYDTERCFDCPHGDRIHRPCTFEGWTSTVIKDTMFCEVITLSWLQHLSGKVVRVMLDYVDQVQICSKLKAVLEKQKLWSEIHFILTNPRSLKHLCRLKIRKCMGRLRLRCPVFMSFLPLPKRLKAYVLYEEYDLYGQESFTGTW", "length": 587, "header": "tr|A0A9J7HEN0-1|A0A9J7HEN0_CRIGR Computationally mapped isoform of Ankyrin repeat and SOCS box protein 14 isoform X2 OS=Cricetulus griseus OX=10029 GN=Asb14 PE=3 SV=1 CANONICAL=A0A9J7HCR9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HAI1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAI1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HAI1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAI1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100751033", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751033", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCR9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCR9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "intracellular signal transduction", "id": "GO:0035556", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035556", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCR9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCR9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7HCR9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCR9" }, { "id": "PS50225", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50225" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SOCS box", "eco_id": "ECO_0000259", "start_pos": 539, "end_pos": 586, "start_aa": "Thr", "end_aa": "Asp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7HAI4-1", "uniprot_ac": "A0A9J7HAI4", "uniprot_id": "A0A9J7HAI4_CRIGR", "mass": { "chemical_mass": 25825.0, "monoisotopic_mass": 25825.0 }, "refseq": { "ac": "XP_035308331", "name": "transmembrane protein 182", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308331" }, "gene_names": [ { "name": "Tmem182", "type": "recommended", "evidence": [ { "id": "A0A9J7HAI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAI4" } ] }, { "name": "Tmem182", "type": "synonym", "evidence": [ { "id": "XP_035308331", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308331" } ] } ], "protein_names": [ { "name": "Transmembrane protein 182", "type": "recommended", "evidence": [ { "id": "A0A9J7HAI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAI4/entry#names_and_taxonomy" } ] }, { "name": "transmembrane protein 182", "type": "synonym", "evidence": [ { "id": "XP_035308331", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308331" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 18% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035308331", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308331" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HAI4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAI4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tmem182", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAI4", "locus": {} } ], "crossref": [ { "id": "A0A9J7HAI4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HAI4", "database": "AlphaFoldDB", "categories": [] }, { "id": "100757008", "url": "https://www.ncbi.nlm.nih.gov/gene/100757008", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004031", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004031", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR026763", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026763", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100757008", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757008", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HAI4", "url": "https://www.orthodb.org/?gene=A0A9J7HAI4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR32012", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32012", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR32012:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32012:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13903", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13903", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035308331", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308331", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HAI4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAI4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HAI4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAI4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRHIDRSGDNHGVCCYVSFVTPYFTWVLGMGSEEPKQIFEALIENITFHHEGFFWRCWFSGIVEENSSNIWKFWYTNQPPSKNCTHAYLSPYPFMRGENNSTSYDSAIIYRGFWAVLLLLGVVAALTASFLIICAAPFASHFLYKAGGGSYIAAGVLFSLVVMLYVIWVQAVADMESYRAMKMKDCWEFTPSVLYGWSFFLAPAGIFFSLLAGLLFLVVGRHIQLHH", "length": 227, "header": "tr|A0A9J7HAI4-1|A0A9J7HAI4_CRIGR Isoform 1 of Transmembrane protein 182 OS=Cricetulus griseus OX=10029 GN=Tmem182 PE=3 SV=1 CANONICAL=A0A9J7HAI4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HAI4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAI4/entry#A0A9J7HAI4-1", "sequence": { "sequence": "MRHIDRSGDNHGVCCYVSFVTPYFTWVLGMGSEEPKQIFEALIENITFHHEGFFWRCWFSGIVEENSSNIWKFWYTNQPPSKNCTHAYLSPYPFMRGENNSTSYDSAIIYRGFWAVLLLLGVVAALTASFLIICAAPFASHFLYKAGGGSYIAAGVLFSLVVMLYVIWVQAVADMESYRAMKMKDCWEFTPSVLYGWSFFLAPAGIFFSLLAGLLFLVVGRHIQLHH", "length": 227, "header": "tr|A0A9J7HAI4-1|A0A9J7HAI4_CRIGR Isoform 1 of Transmembrane protein 182 OS=Cricetulus griseus OX=10029 GN=Tmem182 PE=3 SV=1 CANONICAL=A0A9J7HAI4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HAI4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAI4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HAI4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAI4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100757008", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757008", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HAI4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAI4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "muscle organ development", "id": "GO:0007517", "url": 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"annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035306528", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035306528" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HAL2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAL2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100758673", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAL2", "locus": {} } ], "crossref": [ { "id": "A0A9J7HAL2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HAL2", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd07042", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07042", "database": "CDD", "categories": [ "Protein 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"MLQGAKNKMSGPLVSGTCSGQEEVSDLKSPLSSRFREPLTHARFQELFGGAEEPELPAEPCSPWLCRLWRRRACSCSGLGAWHVLQARLPPLRWLPHYRWRAWLLGDAVAGVTVGIVHVPQGMAFALLTSVPPVFGLYTSFFPVLIYSLLGTGRHLSTGTFAVLSLMTGSVVERLVPDPLAGNLSGIEREQLEARRVGAAAAVAFGSGALMLVMFALQLGVLSTFLSEPVVKALTSGAAVHVLVSQLPSLFGLSLPRQIGCFSLFKTLAAVFMALARSSPAELTISALSLALLVPVKELNVRFRDRLPTPIPGEVVMVLLASVLCFTSSLDTRYNVQVVGLLPGGFPQPLFPTLDELPRILADSLPIALVTFAVSTSLASIYADKYSYTIDPNQELLAHGVSNLVSSLFSCFPNSATLATTSLLVDAGGNTQLAGLFSCIIVLSVLLWLGPFFYYLPKAVLACINISSMRQMFFQIQELPQLWHISRVDFTVWMVTWVAVVTLNVDLGLAVGVVVSMMTVVCRTQRVQCLALGLAEGTELYRPLRESHKLLQVPGLCILSYPSPLYFATRGQFRQILEWHLGLGERTLLGVEPIRVAVLDFSGIPFADAAGAREVVQLTRRCQDAGICLLLAQCNALVLETLTRAGLLDRMTPEQLFVSVQDAAAHALERLKPTGPKICTVWV", "length": 683, "header": "tr|A0A9J7HAL2-1|A0A9J7HAL2_CRIGR Isoform 1 of Solute carrier family 26 member 10 OS=Cricetulus griseus OX=10029 GN=LOC100758673 PE=4 SV=1 CANONICAL=A0A9J7HAL2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HAL2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAL2/entry#A0A9J7HAL2-1", 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"prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 113, "start_aa": "Thr", "end_pos": 113, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr113", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"https://www.ncbi.nlm.nih.gov/protein/XP_035308713" }, "gene_names": [ { "name": "Wdr17", "type": "recommended", "evidence": [ { "id": "A0A9J7HAM7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAM7" } ] }, { "name": "Wdr17", "type": "synonym", "evidence": [ { "id": "XP_035308713", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308713" } ] } ], "protein_names": [ { "name": "WD repeat-containing protein 17 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_035308713", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308713" }, { "id": "A0A9J7HAM7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAM7/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035308713", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308713" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HAM7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAM7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Wdr17", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAM7", "locus": {} } ], "crossref": [ { "id": "cd00200", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00200", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100752054", "url": "https://www.ncbi.nlm.nih.gov/gene/100752054", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011044", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011044", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019775", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019775", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020472", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020472", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056153", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056153", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100752054", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752054", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HAM7", "url": "https://www.orthodb.org/?gene=A0A9J7HAM7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR44464", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44464", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR44464:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR44464:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00400", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00400", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23381", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23381", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035308713", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308713", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HAM7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAM7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HAM7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAM7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HBA7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBA7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HBA7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBA7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HDK9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDK9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HDK9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDK9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HE59", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HE59", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HE59-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HE59-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HEB0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HEB0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HEB0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HEB0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HFH1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFH1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HFH1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFH1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KFB7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFB7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KFB7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFB7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAWMTYVSHWFEQDDWYEGLQRATMTQVRQVGLLAAGCQPWNKDVCAANGDRFAYCATLAIYIYQLDHRYNEFKLHAIMSEHKKTITAISWCPHNPDLFASGSTDNLVIVWNVAEQKVIAKLDNIKGIPACLGWCWDTDDAVAFVSQKGPLLLWTISGPDSGVSVHKEAHGFVSDVSIFRWHTQKKGKVVFGHIDGSISLFQPGNKHQKHVLRPESLEGTDEEDPVTALEWDPLSTDYLLVANLHYGIRLLDSESLYCITTFSFPSAAVSVQCLAWVPSAPGMFITGDSQVGILRIWNVSRTTPIDNFKLKKTGFHCLHVVNSPPKKKFSAQSPNKNHYTSSTSEAVPPPNLTQNQAFSLPPGHVVCCFLDGGVGLYDMGAKKWDFLRELGHVETIFDCKFKPDDPNLLATASFDGTIKVWDINTLTALYTSPGNEGVIFALSWAPGDLNCIAGATSRNGAFIWDVQKGKMIQRFNEHGKNGIFYIAWSHRDSKRIATCSGDGFCIIRTTDGKLLHKYKHPAAVFGCDWSQNNKDMIATGCEDKNVRVFYVATSSNQPLKVFTGHTARVFHVKWSPLREGILCSGSDDGSVRIWDYTQDACINILNGHTAPVRGLTWNTEIPYLLISGSWDSTIKVWDTREGVCLDTVYDHGADVYGLTCHPSRPFTMASCSRDSTVRLWSLIPLITPLQINILADRSWEEIIGNTDNAVKEGSPPLLCGKVSRDIKQEVENLMCNPRVKKLRLFSECLSPPGGSDNLWNLVAVINGQHDSLLPQNYSKGMMHLKHLIKFRTSEAQELTTIKVSKFGGGIGAPTKEKKLKEAAELHLRLGQIQRYCELMVELGEWDKALSIAPGVSVKYWRKLMQRRADQLIQEDKDDVIPYCIATGDVRKLVDFFVSRGQLKEALLVAQAACEGNMQPLHISTPKGASSSDDIYKEDFNELLHKVINELAEWYFQDGRAVLAACCHLAVDDIELAMAYLIRGNELELAVSVGTVLGEPAVPETHYALQLLARKCMMISMCFPSVSYRNLAADLLLMTPDSKAQLVKLCAFYPGCNEEINDLHKKCNLPPVEECIELAEKALADGNVFDTIKYYLLSQEPEKALPIGIDFVKGCMKNSDWTLDTVYPVLDLLSFIRTEKLLLHLCTNTRNELLILCGYVGALLAIRRQYQSIVPALYEYTSQLLKRRVVSVPLKIEHLSEELDAWRACTQSANQSSEESPCTPPSDSQRTVYETLLKRLKEEPLKGITGQDYVTGSNLPSHSDIHISCLTGLKIQGPVYFLEDGKSAISLNDALMWAKVNPFSPLGTGIRLNPF", "length": 1314, "header": "tr|A0A9J7HAM7-1|A0A9J7HAM7_CRIGR Isoform 1 of WD repeat-containing protein 17 isoform X1 OS=Cricetulus griseus OX=10029 GN=Wdr17 PE=4 SV=1 CANONICAL=A0A9J7HAM7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HAM7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAM7/entry#A0A9J7HAM7-1", "sequence": { "sequence": "MAWMTYVSHWFEQDDWYEGLQRATMTQVRQVGLLAAGCQPWNKDVCAANGDRFAYCATLAIYIYQLDHRYNEFKLHAIMSEHKKTITAISWCPHNPDLFASGSTDNLVIVWNVAEQKVIAKLDNIKGIPACLGWCWDTDDAVAFVSQKGPLLLWTISGPDSGVSVHKEAHGFVSDVSIFRWHTQKKGKVVFGHIDGSISLFQPGNKHQKHVLRPESLEGTDEEDPVTALEWDPLSTDYLLVANLHYGIRLLDSESLYCITTFSFPSAAVSVQCLAWVPSAPGMFITGDSQVGILRIWNVSRTTPIDNFKLKKTGFHCLHVVNSPPKKKFSAQSPNKNHYTSSTSEAVPPPNLTQNQAFSLPPGHVVCCFLDGGVGLYDMGAKKWDFLRELGHVETIFDCKFKPDDPNLLATASFDGTIKVWDINTLTALYTSPGNEGVIFALSWAPGDLNCIAGATSRNGAFIWDVQKGKMIQRFNEHGKNGIFYIAWSHRDSKRIATCSGDGFCIIRTTDGKLLHKYKHPAAVFGCDWSQNNKDMIATGCEDKNVRVFYVATSSNQPLKVFTGHTARVFHVKWSPLREGILCSGSDDGSVRIWDYTQDACINILNGHTAPVRGLTWNTEIPYLLISGSWDSTIKVWDTREGVCLDTVYDHGADVYGLTCHPSRPFTMASCSRDSTVRLWSLIPLITPLQINILADRSWEEIIGNTDNAVKEGSPPLLCGKVSRDIKQEVENLMCNPRVKKLRLFSECLSPPGGSDNLWNLVAVINGQHDSLLPQNYSKGMMHLKHLIKFRTSEAQELTTIKVSKFGGGIGAPTKEKKLKEAAELHLRLGQIQRYCELMVELGEWDKALSIAPGVSVKYWRKLMQRRADQLIQEDKDDVIPYCIATGDVRKLVDFFVSRGQLKEALLVAQAACEGNMQPLHISTPKGASSSDDIYKEDFNELLHKVINELAEWYFQDGRAVLAACCHLAVDDIELAMAYLIRGNELELAVSVGTVLGEPAVPETHYALQLLARKCMMISMCFPSVSYRNLAADLLLMTPDSKAQLVKLCAFYPGCNEEINDLHKKCNLPPVEECIELAEKALADGNVFDTIKYYLLSQEPEKALPIGIDFVKGCMKNSDWTLDTVYPVLDLLSFIRTEKLLLHLCTNTRNELLILCGYVGALLAIRRQYQSIVPALYEYTSQLLKRRVVSVPLKIEHLSEELDAWRACTQSANQSSEESPCTPPSDSQRTVYETLLKRLKEEPLKGITGQDYVTGSNLPSHSDIHISCLTGLKIQGPVYFLEDGKSAISLNDALMWAKVNPFSPLGTGIRLNPF", "length": 1314, "header": "tr|A0A9J7HAM7-1|A0A9J7HAM7_CRIGR Isoform 1 of WD repeat-containing protein 17 isoform X1 OS=Cricetulus griseus OX=10029 GN=Wdr17 PE=4 SV=1 CANONICAL=A0A9J7HAM7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HBA7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAM7/entry#A0A9J7HBA7-1", "sequence": { "sequence": "MTQVRQVGLLAAGCQPWNKDVCAANGDRFAYCATLAIYIYQLDHRYNEFKLHAIMSEHKKTITAISWCPHNPDLFASGSTDNLVIVWNVAEQKVIAKLDNIKGIPACLGWCWDTDDAVAFVSQKGPLLLWTISGPDSGVSVHKEAHGFVSDVSIFRWHTQKKGKVVFGHIDGSISLFQPGNKHQKHVLRPESLEGTDEEDPVTALEWDPLSTDYLLVANLHYGIRLLDSESLYCITTFSFPSAAVSVQCLAWVPSAPGMFITGDSQVGILRIWNVSRTTPIDNFKLKKTGFHCLHVVNSPPKKKFSAQSPNKNHYTSSTSEAVPPPNLTQNQAFSLPPGHVVCCFLDGGVGLYDMGAKKWDFLRELGHVETIFDCKFKPDDPNLLATASFDGTIKVWDINTLTALYTSPGNEGVIFALSWAPGDLNCIAGATSRNGAFIWDVQKGKMIQRFNEHGKNGIFYIAWSHRDSKRIATCSGDGFCIIRTTDGKLLHKYKHPAAVFGCDWSQNNNSVRIWDYTQDACINILNGHTAPVRGLTWNTEIPYLLISGSWDSTIKVWDTREGVCLDTVYDHGADVYGLTCHPSRPFTMASCSRDSTVRLWSLIPLITPLQINILADRSWEEIIGNTDNAVKEGSPPLLCGKVSRDIKQEVENLMCNPRVKKLRLFSECLSPPGGSDNLWNLVAVINGQHDSLLPQNYSKGMMHLKHLIKFRTSEAQELTTIKVSKFGGGIGAPTKEKKLKEAAELHLRLGQIQRYCELMVELGEWDKALSIAPGVSVKYWRKLMQRRADQLIQEDKDDVIPYCIATGDVRKLVDFFVSRGQLKEALLVAQAACEGNMQPLHISTPKGASSSDDIYKEDFNELLHKVINELAEWYFQDGRAVLAACCHLAVDDIELAMAYLIRGNELELAVSVGTVLGEPAVPETHYALQLLARKCMMISMWNLAADLLLMTPDSKAQLVKLCAFYPGCNEEINDLHKKCNLPPVEECIELAEKALADGNVFDTIKYYLLSQEPEKALPIGIDFVKGCMKNSDWTLDTVYPVLDLLSFIRTEKLLLHLCTNTRNELLILCGYVGALLAIRRQYQSIVPALYEYTSQLLKRRVVSVPLKIEHLSEELDAWRACTQSANQSSEESPCTPPSDSQRTVYETLLKRLKEEPLKGITGQDYVTGSNLPSHSDIHISCLTGLKIQGPVYFLEDGKSAISLNDALMWAKVNPFSPLGTGIRLNPF", "length": 1228, "header": "tr|A0A9J7HBA7-1|A0A9J7HBA7_CRIGR Computationally mapped isoform of WD repeat-containing protein 17 isoform X6 OS=Cricetulus griseus OX=10029 GN=Wdr17 PE=4 SV=1 CANONICAL=A0A9J7HAM7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HDK9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAM7/entry#A0A9J7HDK9-1", "sequence": { "sequence": "MTQVRQVGLLAAGCQPWNKDVCAANGDRFAYCATLAIYIYQLDHRYNEFKLHAIMSEHKKTITAISWCPHNPDLFASGSTDNLVIVWNVAEQKVIAKLDNIKGIPACLGWCWDTDDAVAFVSQKGPLLLWTISGPDSGVSVHKEAHGFVSDVSIFRWHTQKKGKVVFGHIDGSISLFQPGNKHQKHVLRPESLEGTDEEDPVTALEWDPLSTDYLLVANLHYGIRLLDSESLYCITTFSFPSAAVSVQCLAWVPSAPGMFITGDSQVGILRIWNVSRTTPIDNFKLKKTGFHCLHVVNSPPKKKFSAQSPNKNHYTSSTSEAVPPPNLTQNQAFSLPPGHVVCCFLDGGVGLYDMGAKKWDFLRELGHVETIFDCKFKPDDPNLLATASFDGTIKVWDINTLTALYTSPGNEGVIFALSWAPGDLNCIAGATSRNGAFIWDVQKGKMIQRFNEHGKNGIFYIAWSHRDSKRIATCSGDGFCIIRTTDGKLLHKYKHPAAVFGCDWSQNNNSVRIWDYTQDACINILNGHTAPVRGLTWNTEIPYLLISGSWDSTIKVWDTREGVCLDTVYDHGADVYGLTCHPSRPFTMASCSRDSTVRLWSLIPLITPLQINILADRSWEEIIGNTDNAVKEGSPPLLCGKVSRDIKQEVENLMCNPRVKKLRLFSECLSPPGGSDNLWNLVAVINGQHDSLLPQNYSKGMMHLKHLIKFRTSEAQELTTIKVSKFGGGIGAPTKEKKLKEAAELHLRLGQIQRYCELMVELGEWDKALSIAPGVSVKYWRKLMQRRADQLIQEDKDDVIPYCIATGDVRKLVDFFVSRGQLKEALLVAQAACEGNMQPLHISTPKGASSSDDIYKEDFNELLHKVINELAEWYFQDGRAVLAACCHLAVDDIELAMAYLIRGNELELAVSVGTVLGEPAVPETHYALQLLARKCMMISMCFPSVSYRNLAADLLLMTPDSKAQLVKLCAFYPGCNEEINDLHKKCNLPPVEECIELAEKALADGNVFDTIKYYLLSQEPEKALPIGIDFVKGCMKNSDWTLDTVYPVLDLLSFIRTEKLLLHLCTNTRNELLILCGYVGALLAIRRQYQSIVPALYEYTSQLLKRRVVSVPLKIEHLSEELDAWRACTQSANQSSEESPCTPPSDSQRTVYETLLKRLKEEPLKGITGQDYVTGSNLPSHSDIHISCLTGLKIQGPVYFLEDGKSAISLNDALMWAKVNPFSPLGTGIRLNPF", "length": 1235, "header": "tr|A0A9J7HDK9-1|A0A9J7HDK9_CRIGR Computationally mapped isoform of WD repeat-containing protein 17 isoform X5 OS=Cricetulus griseus OX=10029 GN=Wdr17 PE=4 SV=1 CANONICAL=A0A9J7HAM7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HE59-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAM7/entry#A0A9J7HE59-1", "sequence": { "sequence": "MAWMTYVSHWFEQDDWYEGLQRATMTQVRQVGLLAAGCQPWNKDVCAANGDRFAYCATLAIYIYQLDHRYNEFKLHAIMSEHKKTITAISWCPHNPDLFASGSTDNLVIVWNVAEQKVIAKLDNIKGIPACLGWCWDTDDAVAFVSQKGPLLLWTISGPDSGVSVHKEAHGFVSDVSIFRWHTQKKGKVVFGHIDGSISLFQPGSKHQKHVLRPESLEGTDEEDPVTALEWDPLSTDYLLVANLHYGIRLLDSESLYCITTFSFPSAAVSVQCLAWVPSAPGMFITGDSQVGILRIWNVSRTTPIDNFKLKKTGFHCLHVVNSPPKKKFSAQSPNKNHYTSSTSEAVPPPNLTQNQAFSLPPGHVVCCFLDGGVGLYDMGAKKWDFLRELGHVETIFDCKFKPDDPNLLATASFDGTIKVWDINTLTALYTSPGNEGVIFALSWAPGDLNCIAGATSRNGAFIWDVQKGKMIQRFNEHGKNGIFYIAWSHRDSKRIATCSGDGFCIIRTTDGKLLHKYKHPAAVFGCDWSQNNKDMIATGCEDKNVRVFYVATSSNQPLKVFTGHTARVFHVKWSPLREGILCSGSDDGSVRIWDYTQDACINILNGHTAPVRGLTWNTEIPYLLISGSWDSTIKVWDTREGVCLDTVYDHGADVYGLTCHPSRPFTMASCSRDSTVRLWSLIPLITPLQINILADRSWEEIIGNTDNAVKEGSPPLLCGKVSRDIKQEVENLMCNPRVKKLRLFSECLSPPGGSDNLWNLVAVINGQHDSLLPQNYSKGMMHLKHLIKFRTSEAQELTTIKVSKFGGGIGAPTKEKKLKEAAELHLRLGQIQRYCELMVELGEWDKALSIAPGVSVKYWRKLMQRRADQLIQEDKDDVIPYCIATGDVRKLVDFFVSRGQLKEALLVAQAACEGNMQPLHISTPKGASSSDDIYKEDFNELLHKVINELAEWYFQDGRAVLAACCHLAVDDIELAMAYLIRGNELELAVSVGTVLGEPAVPETHYALQLLARKCMMISMWNLAADLLLMTPDSKAQLVKLCAFYPGCNEEINDLHKKCNLPPVEECIELAEKALADGNVFDTIKYYLLSQEPEKALPIGIDFVKGCMKNSDWTLDTVYPVLDLLSFIRTEKLLLHLCTNTRNELLILCGYVGALLAIRRQYQSIVPALYEYTSQLLKRRVVSVPLKIEHLSEELDAWRACTQSANQSSEESPCTPPSDSQRTVYETLLKRLKEEPLKGITGQDYVTGSNLPSHSDIHISCLTGLKIQGPVYFLEDGKSAISLNDALMWAKVNPFSPLGTGIRLNPF", "length": 1307, "header": "tr|A0A9J7HE59-1|A0A9J7HE59_CRIGR Computationally mapped isoform of WD repeat-containing protein 17 isoform X2 OS=Cricetulus griseus OX=10029 GN=Wdr17 PE=4 SV=1 CANONICAL=A0A9J7HAM7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HEB0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAM7/entry#A0A9J7HEB0-1", "sequence": { "sequence": "MTQVRQVGLLAAGCQPWNKDVCAANGDRFAYCATLAIYIYQLDHRYNEFKLHAIMSEHKKTITAISWCPHNPDLFASGSTDNLVIVWNVAEQKVIAKLDNIKGIPACLGWCWDTDDAVAFVSQKGPLLLWTISGPDSGVSVHKEAHGFVSDVSIFRWHTQKKGKVVFGHIDGSISLFQPGSKHQKHVLRPESLEGTDEEDPVTALEWDPLSTDYLLVANLHYGIRLLDSESLYCITTFSFPSAAVSVQCLAWVPSAPGMFITGDSQVGILRIWNVSRTTPIDNFKLKKTGFHCLHVVNSPPKKKFSAQSPNKNHYTSSTSEAVPPPNLTQNQAFSLPPGHVVCCFLDGGVGLYDMGAKKWDFLRELGHVETIFDCKFKPDDPNLLATASFDGTIKVWDINTLTALYTSPGNEGVIFALSWAPGDLNCIAGATSRNGAFIWDVQKGKMIQRFNEHGKNGIFYIAWSHRDSKRIATCSGDGFCIIRTTDGKLLHKYKHPAAVFGCDWSQNNKDMIATGCEDKNVRVFYVATSSNQPLKVFTGHTARVFHVKWSPLREGILCSGSDDGSVRIWDYTQDACINILNGHTAPVRGLTWNTEIPYLLISGSWDSTIKVWDTREGVCLDTVYDHGADVYGLTCHPSRPFTMASCSRDSTVRLWSLIPLITPLQINILADRSWEEIIGNTDNAVKEGSPPLLCGKVSRDIKQEVENLMCNPRVKKLRLFSECLSPPGGSDNLWNLVAVINGQHDSLLPQNYSKGMMHLKHLIKFRTSEAQELTTIKVSKFGGGIGAPTKEKKLKEAAELHLRLGQIQRYCELMVELGEWDKALSIAPGVSVKYWRKLMQRRADQLIQEDKDDVIPYCIATGDVRKLVDFFVSRGQLKEALLVAQAACEGNMQPLHISTPKGASSSDDIYKEDFNELLHKVINELAEWYFQDGRAVLAACCHLAVDDIELAMAYLIRGNELELAVSVGTVLGEPAVPETHYALQLLARKCMMISMCFPSVSYRNLAADLLLMTPDSKAQLVKLCAFYPGCNEEINDLHKKCNLPPVEECIELAEKALADGNVFDTIKYYLLSQEPEKALPIGIDFVKGCMKNSDWTLDTVYPVLDLLSFIRTEKLLLHLCTNTRNELLILCGYVGALLAIRRQYQSIVPALYEYTSQLLKRRVVSVPLKIEHLSEELDAWRACTQSANQSSEESPCTPPSDSQRTVYETLLKRLKEEPLKGITGQDYVTGSNLPSHSDIHISCLTGLKIQGPVYFLEDGKSAISLNDALMWAKVNPFSPLGTGIRLNPF", "length": 1290, "header": "tr|A0A9J7HEB0-1|A0A9J7HEB0_CRIGR Computationally mapped isoform of WD repeat-containing protein 17 isoform X4 OS=Cricetulus griseus OX=10029 GN=Wdr17 PE=4 SV=1 CANONICAL=A0A9J7HAM7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HFH1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAM7/entry#A0A9J7HFH1-1", "sequence": { "sequence": "MSEHKKTITAISWCPHNPDLFASGSTDNLVIVWNVAEQKVIAKLDNIKGIPACLGWCWDTDDAVAFVSQKGPLLLWTISGPDSGVSVHKEAHGFVSDVSIFRWHTQKKGKVVFGHIDGSISLFQPVSAQSPNKNHYTSSTSEAVPPPNLTQNQAFSLPPGHVVCCFLDGGVGLYDMGAKKWDFLRELGHVETIFDCKFKPDDPNLLATASFDGTIKVWDINTLTALYTSPGNEGVIFALSWAPGDLNCIAGATSRNGAFIWDVQKGKMIQRFNEHGKNGIFYIAWSHRDSKRIATCSGDGFCIIRTTDGKLLHKYKHPAAVFGCDWSQNNKDMIATGCEDKNVRVFYVATSSNQPLKVFTGHTARVFHVKWSPLREGILCSGSDDGSVRIWDYTQDACINILNGHTAPVRGLTWNTEIPYLLISGSWDSTIKVWDTREGVCLDTVYDHGADVYGLTCHPSRPFTMASCSRDSTVRLWSLIPLITPLQINILADRSWEEIIGNTDNAVKEGSPPLLCGKVSRDIKQEVENLMCNPRVKKLRLFSECLSPPGGSDNLWNLVAVINGQHDSLLPQNYSKGMMHLKHLIKFRTSEAQELTTIKVSKFGGGIGAPTKEKKLKEAAELHLRLGQIQRYCELMVELGEWDKALSIAPGVSVKYWRKLMQRRADQLIQEDKDDVIPYCIATGDVRKLVDFFVSRGQLKEALLVAQAACEGNMQPLHISTPKGASSSDDIYKEDFNELLHKVINELAEWYFQDGRAVLAACCHLAVDDIELAMAYLIRGNELELAVSVGTVLGEPAVPETHYALQLLARKCMMISMCFLLCYTNRNLAADLLLMTPDSKAQLVKLCAFYPGCNEEINDLHKKCNLPPVEECIELAEKALADGNVFDTIKYYLLSQEPEKALPIGIDFVKGCMKNSDWTLDTVYPVLDLLSFIRTEKLLLHLCTNTRNELLILCGYVGALLAIRRQYQSIVPALYEYTSQLLKRRVVSVPLKIEHLSEELDAWRACTQSANQSSEESPCTPPSDSQRTVYETLLKRLKEEPLKGITGQDYVTGSNLPSHSDIHISCLTGLKIQGPVYFLEDGKSAISLNDALMWAKVNPFSPLGTGIRLNPF", "length": 1112, "header": "tr|A0A9J7HFH1-1|A0A9J7HFH1_CRIGR Computationally mapped isoform of WD repeat-containing protein 17 isoform X7 OS=Cricetulus griseus OX=10029 GN=Wdr17 PE=4 SV=1 CANONICAL=A0A9J7HAM7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KFB7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAM7/entry#A0A9J7KFB7-1", "sequence": { "sequence": "MAWMTYVSHWFEQDDWYEGLQRATMTQVRQVGLLAAGCQPWNKDVCAANGDRFAYCATLAIYIYQLDHRYNEFKLHAIMSEHKKTITAISWCPHNPDLFASGSTDNLVIVWNVAEQKVIAKLDNIKGIPACLGWCWDTDDAVAFVSQKGPLLLWTISGPDSGVSVHKEAHGFVSDVSIFRWHTQKKGKVVFGHIDGSISLFQPDEEDPVTALEWDPLSTDYLLVANLHYGIRLLDSESLYCITTFSFPSAAVSVQCLAWVPSAPGMFITGDSQVGILRIWNVSRTTPIDNFKLKKTGFHCLHVVNSPPKKKFSAQSPNKNHYTSSTSEAVPPPNLTQNQAFSLPPGHVVCCFLDGGVGLYDMGAKKWDFLRELGHVETIFDCKFKPDDPNLLATASFDGTIKVWDINTLTALYTSPGNEGVIFALSWAPGDLNCIAGATSRNGAFIWDVQKGKMIQRFNEHGKNGIFYIAWSHRDSKRIATCSGDGFCIIRTTDGKLLHKYKHPAAVFGCDWSQNNKDMIATGCEDKNVRVFYVATSSNQPLKVFTGHTARVFHVKWSPLREGILCSGSDDGSVRIWDYTQDACINILNGHTAPVRGLTWNTEIPYLLISGSWDSTIKVWDTREGVCLDTVYDHGADVYGLTCHPSRPFTMASCSRDSTVRLWSLIPLITPLQINILADRSWEEIIGNTDNAVKEGSPPLLCGKVSRDIKQEVENLMCNPRVKKLRLFSECLSPPGGSDNLWNLVAVINGQHDSLLPQNYSKGMMHLKHLIKFRTSEAQELTTIKVSKFGGGIGAPTKEKKLKEAAELHLRLGQIQRYCELMVELGEWDKALSIAPGVSVKYWRKLMQRRADQLIQEDKDDVIPYCIATGDVRKLVDFFVSRGQLKEALLVAQAACEGNMQPLHISTPKGASSSDDIYKEDFNELLHKVINELAEWYFQDGRAVLAACCHLAVDDIELAMAYLIRGNELELAVSVGTVLGEPAVPETHYALQLLARKCMMISMCFPSVSYRNLAADLLLMTPDSKAQLVKLCAFYPGCNEEINDLHKKCNLPPVEECIELAEKALADGNVFDTIKYYLLSQEPEKALPIGIDFVKGCMKNSDWTLDTVYPVLDLLSFIRTEKLLLHLCTNTRNELLILCGYVGALLAIRRQYQSIVPALYEYTSQLLKRRVVSVPLKIEHLSEELDAWRACTQSANQSSEESPCTPPSDSQRTVYETLLKRLKEEPLKGITGQDYVTGSNLPSHSDIHISCLTGLKIQGPVYFLEDGKSAISLNDALMWAKVNPFSPLGTGIRLNPF", "length": 1297, "header": "tr|A0A9J7KFB7-1|A0A9J7HAM7_CRIGR Computationally mapped isoform of WD repeat-containing protein 17 isoform X1 OS=Cricetulus griseus OX=10029 GN=Wdr17 PE=4 SV=1 CANONICAL=A0A9J7HAM7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KFB7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFB7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KFB7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFB7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100752054", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752054", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 1213, "end_pos": 1215, "annotation": "n_glycosylation_sequon" }, { "start_pos": 298, "end_pos": 300, "annotation": "n_glycosylation_sequon" }, { "start_pos": 351, "end_pos": 353, "annotation": "n_glycosylation_sequon" }, { "start_pos": 776, "end_pos": 778, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7HAM7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAM7" }, { "id": "PF23381", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23381" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "IFT122/SMU1 beta-propeller", "eco_id": "ECO_0000259", "start_pos": 396, "end_pos": 681, "start_aa": "Ile", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1213, "end_pos": 1215 }, { "start_pos": 298, "end_pos": 300 }, { "start_pos": 351, "end_pos": 353 }, { "start_pos": 776, "end_pos": 778 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7HAP4-1", "uniprot_ac": "A0A9J7HAP4", "uniprot_id": "A0A9J7HAP4_CRIGR", "mass": { "chemical_mass": 29707.0, "monoisotopic_mass": 29707.0 }, "refseq": { "ac": "XP_035308544", "name": "ankyrin repeat domain-containing protein 10-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308544" }, "gene_names": [ { "name": "LOC100768443", "type": "recommended", "evidence": [ { "id": "A0A9J7HAP4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAP4" } ] }, { "name": "LOC100768443", "type": "synonym", "evidence": [ { "id": "XP_035308544", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308544" } ] } ], "protein_names": [ { "name": "Ankyrin repeat domain-containing protein 10-like", "type": "synonym", "evidence": [ { "id": "A0A9J7HAP4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAP4/entry#names_and_taxonomy" } ] }, { "name": "ankyrin repeat domain-containing protein 10-like", "type": "synonym", "evidence": [ { "id": "XP_035308544", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308544" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035308544", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308544" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HAP4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAP4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100768443", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAP4", "locus": {} } ], "crossref": [ { "id": "A0A9J7HAP4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HAP4", "database": "AlphaFoldDB", "categories": [] }, { "id": "100768443", "url": "https://www.ncbi.nlm.nih.gov/gene/100768443", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:100768443", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768443", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HAP4", "url": "https://www.orthodb.org/?gene=A0A9J7HAP4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "XP_035308544", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308544", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HAP4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAP4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HAP4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAP4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFSMASLLNTSILLSLRNASGLTTADIAQTQGFQECTQFLLSLQNHQMSLFCHNGTLSEAHENTLPNHISLGTNRKRCLEDSESLGVKKARTGVPSLDHTMPLANGGEADDDADRMHADGEFAAVSDVKNSSSVLNTLTNGSVINGHLDFPCVTQLSVVENRSNPCLSGSNGISNGQPFSSGQGSVCANGTEEPEKTMGVNPEMCGSLHLNGSPSSCVASRLSWVGDGGENLHYGHFHGFGDTAESIPELSSVLEHSSCVRVEQRYDSAVLGNMQLRHGS", "length": 280, "header": "tr|A0A9J7HAP4-1|A0A9J7HAP4_CRIGR Isoform 1 of Ankyrin repeat domain-containing protein 10-like OS=Cricetulus griseus OX=10029 GN=LOC100768443 PE=4 SV=1 CANONICAL=A0A9J7HAP4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HAP4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAP4/entry#A0A9J7HAP4-1", "sequence": { "sequence": "MFSMASLLNTSILLSLRNASGLTTADIAQTQGFQECTQFLLSLQNHQMSLFCHNGTLSEAHENTLPNHISLGTNRKRCLEDSESLGVKKARTGVPSLDHTMPLANGGEADDDADRMHADGEFAAVSDVKNSSSVLNTLTNGSVINGHLDFPCVTQLSVVENRSNPCLSGSNGISNGQPFSSGQGSVCANGTEEPEKTMGVNPEMCGSLHLNGSPSSCVASRLSWVGDGGENLHYGHFHGFGDTAESIPELSSVLEHSSCVRVEQRYDSAVLGNMQLRHGS", "length": 280, "header": "tr|A0A9J7HAP4-1|A0A9J7HAP4_CRIGR Isoform 1 of Ankyrin repeat domain-containing protein 10-like OS=Cricetulus griseus OX=10029 GN=LOC100768443 PE=4 SV=1 CANONICAL=A0A9J7HAP4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HAP4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAP4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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"title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7HB92-1", "uniprot_ac": "A0A9J7HB92", "uniprot_id": "A0A9J7HB92_CRIGR", "mass": { "chemical_mass": 39246.0, "monoisotopic_mass": 39246.0 }, "refseq": { "ac": "XP_035308748", "name": "spermatogenesis-associated serine-rich protein 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308748" }, "gene_names": [ { "name": "Spats1", "type": "recommended", "evidence": [ { "id": "A0A9J7HB92", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HB92" } ] }, { "name": "Spats1", "type": "synonym", "evidence": [ { "id": "XP_035308748", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308748" } ] } ], "protein_names": [ { "name": "Spermatogenesis-associated serine-rich protein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7HB92", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HB92/entry#names_and_taxonomy" } ] }, { "name": "spermatogenesis-associated serine-rich protein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_035308748", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308748" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035308748", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308748" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HB92", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HB92" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Spats1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HB92", "locus": {} } ], "crossref": [ { "id": "A0A9J7HB92", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HB92", "database": "AlphaFoldDB", "categories": [] }, { "id": "100757112", "url": "https://www.ncbi.nlm.nih.gov/gene/100757112", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029165", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029165", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100757112", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757112", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HB92", "url": "https://www.orthodb.org/?gene=A0A9J7HB92", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR35845", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35845", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR35845:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35845:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15160", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15160", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035308748", "url": 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"database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KFC5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFC5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSNGNGKPGCQLPCVSRAASTRELVKVLEKSDSGVTKRYNTKHTDGLESSGSLASSRMGSDRRSSLLSSDNACPRVDEPPGSTGSLILSNKASEMDQKSSSSSSSSSSSSAQSKCPSQVSLPVFQKEIHPEELSLLKSQTKDGHRPEWTFYPRFSSNIHTYHTGKQCFFSGVFRGNRKSVAESTVDKSLGRKKYDIDPRNGIPRLTPGDNPYMFPEQSKGFFKAGATLPPVNFSLTPYEKKFDTFIPLEPLPPIPNLPFLEKEKANNLSNEIKEVEELDSWQASSPFLSSFFSSGTGEMAPRLRLLAALPEEKSSVVKKRLTTPCNSSVRLTETFWPHRISSHGFRTYLRTHTHK", "length": 355, "header": "tr|A0A9J7HB92-1|A0A9J7HB92_CRIGR Isoform 1 of Spermatogenesis-associated serine-rich protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Spats1 PE=4 SV=1 CANONICAL=A0A9J7HB92-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HAP7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HB92/entry#A0A9J7HAP7-1", "sequence": { "sequence": 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"MSNGNGKPGCQLPCVSRAASTRELVKVLEKSDSGVTKRYNTKHTDGLESSGSLASSRMGSDRRSSLLSSDNACPRVDEPPGSTGSLILSNKASEMDQKSSSSSSSSSSSSAQSKCPSQVSLPVFQKEIHPEELSLLKSQTKDGHRPEWTFYPRFSSNIHTYHTGKQCFFSGVFRGNRKSVAESTVDKSLGRKKYDIDPRNGIPRLTPGDNPYMFPEQSKGFFKAGATLPPVNFSLTPYEKKFDTFIPLEPLPPIPNLPFLEKEKANNLSNEIKEVEELDSWQASSPFLSSFFSSGTGEMAPRLRLLAALPEEKSSVVKKRLTTPCNSSVRLTETFWPHRISSHGFRTYLRTHTHK", "length": 355, "header": "tr|A0A9J7HB92-1|A0A9J7HB92_CRIGR Isoform 1 of Spermatogenesis-associated serine-rich protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Spats1 PE=4 SV=1 CANONICAL=A0A9J7HB92-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HE80-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HB92/entry#A0A9J7HE80-1", "sequence": { "sequence": "MVQTGAAMICDTKHTDGLESSGSLASSRMGSDRRSSLLSSDNACPRVDEPPGSTGSLILSNKASEMDQKSSSSSSSSSSSSAQSKCPSQVSLPVFQKEIHPEELSLLKSQTKDGHRPEWTFYPRFSSNIHTYHTGKQCFFSGVFRGNRKSVAESTVDKSLGRKKYDIDPRNGIPRLTPGDNPYMFPEQSKGFFKAGATLPPVNFSLTPYEKKFDTFIPLEPLPPIPNLPFLEKEKANNLSNEIKEVEELDSWQASSPFLSSFFSSGTGEMAPRLRLLAALPEEKSSVVKKRLTTPCNSSVRLTETFWPHRISSHGFRTYLRTHTHK", "length": 326, "header": "tr|A0A9J7HE80-1|A0A9J7HE80_CRIGR Computationally mapped isoform of Spermatogenesis-associated serine-rich protein 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Spats1 PE=4 SV=1 CANONICAL=A0A9J7HB92-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KFC5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HB92/entry#A0A9J7KFC5-1", "sequence": { "sequence": "MSNGNGKPGCQLPCVSRAASTRELVKVLEKSDSGVTKRYNTKHTDGLESSGSLASSRMGSDRRSSLLSSDNACPRVDEPPGSTGSLILSNKASEMDQKSSSSSSSSSSSSAQSKCPSQVSLPVFQKEIHPEELSLLKSQTKDGHRPEWTFYPRFSSNIHTYHTGKQCFFSGVFRGNRKSVAESTVDKSLGRKKYDIDPRNGIPRLTPGDNPYMFPEQSKGFFKAGATLPPVNFSLTPYEKKFDTFIPLEPLPPIPNLPFLEKEKANNLSNEIKEVEELDSWQASSPFLSSFFSSGIFNFVRHP", "length": 303, "header": "tr|A0A9J7KFC5-1|A0A9J7HB92_CRIGR Computationally mapped isoform of Spermatogenesis-associated serine-rich protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Spats1 PE=4 SV=1 CANONICAL=A0A9J7HB92-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035307248", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307248" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HAT2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAT2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tafa2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAT2", "locus": {} } ], "crossref": [ { "id": "A0A9J7HAT2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HAT2", "database": "AlphaFoldDB", "categories": [] }, { "id": "100759893", "url": "https://www.ncbi.nlm.nih.gov/gene/100759893", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR020350", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020350", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051743", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051743", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100759893", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759893", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HAT2", "url": "https://www.orthodb.org/?gene=A0A9J7HAT2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31770", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31770", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31770:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31770:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12020", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12020", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035307248", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307248", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HAT2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAT2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HAT2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAT2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSKRYLQKATKGKLLIIIFIVTLWGKAVSSANHHKAHHVKTGTCEVVALHRCCNKNKIEERSQTVKCSCFPGQVAGTTRAAPSCVDASIVEQKWWCHMQPCLEGEECKVLPDRKGWSCSSGNKVKTTRTIDADSLGCSALKADAAKHSSCTAMLTVPMANAAGMVVVVYPGTEGCCVARSLFTTGANSVDNSSFKADPQFAYDRNH", "length": 206, "header": "tr|A0A9J7HAT2-1|A0A9J7HAT2_CRIGR Isoform 1 of Chemokine-like protein TAFA-2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Tafa2 PE=3 SV=1 CANONICAL=A0A9J7HAT2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HAT2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAT2/entry#A0A9J7HAT2-1", "sequence": { "sequence": "MSKRYLQKATKGKLLIIIFIVTLWGKAVSSANHHKAHHVKTGTCEVVALHRCCNKNKIEERSQTVKCSCFPGQVAGTTRAAPSCVDASIVEQKWWCHMQPCLEGEECKVLPDRKGWSCSSGNKVKTTRTIDADSLGCSALKADAAKHSSCTAMLTVPMANAAGMVVVVYPGTEGCCVARSLFTTGANSVDNSSFKADPQFAYDRNH", "length": 206, "header": "tr|A0A9J7HAT2-1|A0A9J7HAT2_CRIGR Isoform 1 of Chemokine-like protein TAFA-2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Tafa2 PE=3 SV=1 CANONICAL=A0A9J7HAT2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HAT2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAT2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100759893", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759893", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HAT2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAT2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "receptor ligand activity", "id": "GO:0048018", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048018", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HAT2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAT2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 191, "end_pos": 193, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 191, "end_pos": 193 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7HBD4-1", "uniprot_ac": "A0A9J7HBD4", "uniprot_id": "A0A9J7HBD4_CRIGR", "mass": { "chemical_mass": 57210.0, "monoisotopic_mass": 57210.0 }, "refseq": { "ac": "XP_035308813", "name": "PRAME family member 8-like isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308813" }, "gene_names": [ { "name": "LOC113838074", "type": "recommended", "evidence": [ { "id": "A0A9J7HBD4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBD4" } ] }, { "name": "LOC113838074", "type": "synonym", "evidence": [ { "id": "XP_035308813", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308813" } ] } ], "protein_names": [ { "name": "PRAME family member 8-like isoform X1", "type": "synonym", "evidence": [ { "id": "XP_035308813", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308813" }, { "id": "A0A9J7HBD4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBD4/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035308813", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308813" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HBD4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBD4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113838074", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBD4", "locus": {} } ], "crossref": [ { "id": "A0A9J7HBD4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HBD4", "database": "AlphaFoldDB", "categories": [] }, { "id": "113838074", "url": "https://www.ncbi.nlm.nih.gov/gene/113838074", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026271", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026271", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050694", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050694", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113838074", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113838074", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HBD4", "url": "https://www.orthodb.org/?gene=A0A9J7HBD4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14224", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14224", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14224:SF94", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14224:SF94", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF27089", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27089", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF27091", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27091", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035308813", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308813", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HAT8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAT8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HAT8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAT8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HBD4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBD4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HBD4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBD4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLPQDLSDCRPFMMSLQTPTPLLKQARQALLRNEELAISAVEQLPMELFPALMMDALKGRHNRMVKAMVAAWPFPCLPVGTLMKTPNLETFQAILEGVDMQLARNVHPSRNKMKVLDLRKVRHEFWTIWTGREDGDCSSESGDEEQVVKVLPRYAVRRRLKVIADLCLRRSLDEEQTYFLQWAQERKGSLQLCCANMKIWDMPLFPIRVILSVFQPWLIENLELHTGWDLSTLTHFATYLGYMRNLRKLSMAHISKSTIWHSNRTANREEKCVMKLVSQFSKLHSLEHLSLKGIYFWRDHMKHILRCLRSPLETLSLTGYFLSESDLNYFPSCQRLWQLKHLAMRGVELWALNPLPLRLLLETVAHTLQSLDLQGCRMEDSQLTVLIPALSRCTQLTKINLCDNDFSGPILKDLLLHTDNWNKMNGEQYPAPVECYDSGDIDTERFLHLCLELMDALRAQRQPKGIVFATDICLQCGVRSVYDLRPRLCPCWQ", "length": 493, "header": "tr|A0A9J7HBD4-1|A0A9J7HBD4_CRIGR Isoform 1 of PRAME family member 8-like isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC113838074 PE=3 SV=1 CANONICAL=A0A9J7HBD4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HAT8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBD4/entry#A0A9J7HAT8-1", "sequence": { "sequence": "MMSLQTPTPLLKQARQALLRNEELAISAVEQLPMELFPALMMDALKGRHNRMVKAMVAAWPFPCLPVGTLMKTPNLETFQAILEGVDMQLARNVHPSRNKMKVLDLRKVRHEFWTIWTGREDGDCSSESGDEEQVVKVLPRYAVRRRLKVIADLCLRRSLDEEQTYFLQWAQERKGSLQLCCANMKIWDMPLFPIRVILSVFQPWLIENLELHTGWDLSTLTHFATYLGYMRNLRKLSMAHISKSTIWHSNRTANREEKCVMKLVSQFSKLHSLEHLSLKGIYFWRDHMKHILRCLRSPLETLSLTGYFLSESDLNYFPSCQRLWQLKHLAMRGVELWALNPLPLRLLLETVAHTLQSLDLQGCRMEDSQLTVLIPALSRCTQLTKINLCDNDFSGPILKDLLLHTDNWNKMNGEQYPAPVECYDSGDIDTERFLHLCLELMDALRAQRQPKGIVFATDICLQCGVRSVYDLRPRLCPCWQ", "length": 481, "header": "tr|A0A9J7HAT8-1|A0A9J7HBD4_CRIGR Computationally mapped isoform of PRAME family member 8-like isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC113838074 PE=3 SV=1 CANONICAL=A0A9J7HBD4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HBD4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBD4/entry#A0A9J7HBD4-1", "sequence": { "sequence": "MLPQDLSDCRPFMMSLQTPTPLLKQARQALLRNEELAISAVEQLPMELFPALMMDALKGRHNRMVKAMVAAWPFPCLPVGTLMKTPNLETFQAILEGVDMQLARNVHPSRNKMKVLDLRKVRHEFWTIWTGREDGDCSSESGDEEQVVKVLPRYAVRRRLKVIADLCLRRSLDEEQTYFLQWAQERKGSLQLCCANMKIWDMPLFPIRVILSVFQPWLIENLELHTGWDLSTLTHFATYLGYMRNLRKLSMAHISKSTIWHSNRTANREEKCVMKLVSQFSKLHSLEHLSLKGIYFWRDHMKHILRCLRSPLETLSLTGYFLSESDLNYFPSCQRLWQLKHLAMRGVELWALNPLPLRLLLETVAHTLQSLDLQGCRMEDSQLTVLIPALSRCTQLTKINLCDNDFSGPILKDLLLHTDNWNKMNGEQYPAPVECYDSGDIDTERFLHLCLELMDALRAQRQPKGIVFATDICLQCGVRSVYDLRPRLCPCWQ", "length": 493, "header": "tr|A0A9J7HBD4-1|A0A9J7HBD4_CRIGR Isoform 1 of PRAME family member 8-like isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC113838074 PE=3 SV=1 CANONICAL=A0A9J7HBD4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HAT8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAT8" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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"uniprot_canonical_ac": "A0A9J7HAX0-1", "uniprot_ac": "A0A9J7HAX0", "uniprot_id": "A0A9J7HAX0_CRIGR", "mass": { "chemical_mass": 20469.0, "monoisotopic_mass": 20469.0 }, "refseq": { "ac": "XP_035307325", "name": "LOW QUALITY PROTEIN: lymphocyte antigen 6 complex locus protein G5b", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307325" }, "gene_names": [ { "name": "Ly6g5b", "type": "recommended", "evidence": [ { "id": "A0A9J7HAX0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAX0" } ] }, { "name": "Ly6g5b", "type": "synonym", "evidence": [ { "id": "XP_035307325", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307325" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: lymphocyte antigen 6 complex locus protein G5b", "type": "synonym", "evidence": [ { "id": "XP_035307325", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307325" }, { "id": "A0A9J7HAX0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAX0/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 17% of CDS bases frameshifts :: corrected 3 indels internal stop codons :: corrected 1 genomic stop codons ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035307325", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307325" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HAX0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAX0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ly6g5b", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAX0", "locus": {} } ], "crossref": [ { "id": "cd23544", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd23544", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100771711", "url": "https://www.ncbi.nlm.nih.gov/gene/100771711", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR038773", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038773", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100771711", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771711", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HAX0", "url": "https://www.orthodb.org/?gene=A0A9J7HAX0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14313", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14313", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14313:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14313:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_035307325", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307325", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HAX0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAX0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HAX0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAX0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKTPDKDPARAQLLPTWEPGLVESHNEGLCANHGVLTVVGFAVGKVADIRTRHCWCLLEDPSMGFISGXEKCTVSSSSPRVVITVYHSVQIHFHVGSCGQYNSYCCKEKHKSPVSQYWCKADXCQDDYCNSWSSAQLQSPXPGPPRRRLALPLSESQIYQFYQALAALELGVSMADLRLIHLSPA", "length": 185, "header": "tr|A0A9J7HAX0-1|A0A9J7HAX0_CRIGR Isoform 1 of LOW QUALITY PROTEIN: lymphocyte antigen 6 complex locus protein G5b OS=Cricetulus griseus OX=10029 GN=Ly6g5b PE=4 SV=1 CANONICAL=A0A9J7HAX0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HAX0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAX0/entry#A0A9J7HAX0-1", "sequence": { "sequence": "MKTPDKDPARAQLLPTWEPGLVESHNEGLCANHGVLTVVGFAVGKVADIRTRHCWCLLEDPSMGFISGXEKCTVSSSSPRVVITVYHSVQIHFHVGSCGQYNSYCCKEKHKSPVSQYWCKADXCQDDYCNSWSSAQLQSPXPGPPRRRLALPLSESQIYQFYQALAALELGVSMADLRLIHLSPA", "length": 185, "header": "tr|A0A9J7HAX0-1|A0A9J7HAX0_CRIGR Isoform 1 of LOW QUALITY PROTEIN: lymphocyte antigen 6 complex locus protein G5b OS=Cricetulus griseus OX=10029 GN=Ly6g5b PE=4 SV=1 CANONICAL=A0A9J7HAX0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035308502", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308502" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HAY0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAY0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Fam184b", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAY0", "locus": {} } ], "crossref": [ { "id": "A0A9J7HAY0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HAY0", "database": "AlphaFoldDB", "categories": [] }, { "id": "100768354", "url": "https://www.ncbi.nlm.nih.gov/gene/100768354", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR039478", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039478", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100768354", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768354", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HAY0", "url": "https://www.orthodb.org/?gene=A0A9J7HAY0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR18870", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR18870", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR18870:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR18870:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15665", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15665", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035308502", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308502", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HAY0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAY0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HAY0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAY0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASALNSKIHPPGTCASSKADARAGSGWRMDCDPEMHVKMCKKIAQLTKVIYALNTRQDEAEASAESLREAHQEELQDAVAETRARLLQEQGYTSEDAETLLKRIQTLESALELQKRLTQEALAESASCKLETKERELRVEAEHAERVLILSKEMLELKADYEKRLQLLTSHEGPQWGQLSQESPDATAESGQRPEMHQVLLEVERLRAENQQLTQDYARKAEELQATYERENEAIRQAMQQSVSEALWQWQEKESGLRKNFQVQESALQAQVRKLEGDLEHRGRKISDLKKYAQKLKERIQDLDVQLREARQENSELKSTARKLGEKLAIAKDRLMLQECHVTGKTDDMKTENDVLRKTNDQEACNLHPQQDQGFPKLCHCNKRGSEAQIKTEASGELERLKQKYEEDLRKVRHQTEEEKQQLQEELGKRLEELVKKHTVEMKSVRSSVEVERKKLKEVEAQLEEVKTKSEREIKQLEDEKAALSVKLQNSLLEDPCSMSKEPSQILPREEDLEKLTAEEGTSSDEEEERIGEPLKDGHDLQPPLCSVLKEKAVEIGYRPEDWQNQKPKLQTQVAACCNKESGHSLQIQHQAHLPELQVLEKARQELQEEHEQTQAQQLLLLESLRQELTEQQAACSEHQKALEMLQKEQRVLGPLGKWQAINQCSGNGTDHTFITEDVGVAGPPGSVPCAAEKGLLEENAQLQDTVLRLRAEVEQHLQEALQLREQHRLLEEDQKAQRAMEVEALHQEHRKEMQAMVADFSGAQARLQARLAALEAELKDSGEKPGKGTSRPEDLQLIGRLQTRLKEREDIIRQLTEERRFHYAAFPGAMSHRNRSFSFNPHPGYLTPSMKKKKMEEVPSRVVSVPNLASYAKNFLSGDLSSRINAPPITKSPSLDPSPSCGQPYKPTQLLDGKTATRAQDGEPSQAKEAPQKQGSPHQEWFTKYFSF", "length": 950, "header": "tr|A0A9J7HAY0-1|A0A9J7HAY0_CRIGR Isoform 1 of Protein FAM184B OS=Cricetulus griseus OX=10029 GN=Fam184b PE=4 SV=1 CANONICAL=A0A9J7HAY0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HAY0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAY0/entry#A0A9J7HAY0-1", "sequence": { "sequence": "MASALNSKIHPPGTCASSKADARAGSGWRMDCDPEMHVKMCKKIAQLTKVIYALNTRQDEAEASAESLREAHQEELQDAVAETRARLLQEQGYTSEDAETLLKRIQTLESALELQKRLTQEALAESASCKLETKERELRVEAEHAERVLILSKEMLELKADYEKRLQLLTSHEGPQWGQLSQESPDATAESGQRPEMHQVLLEVERLRAENQQLTQDYARKAEELQATYERENEAIRQAMQQSVSEALWQWQEKESGLRKNFQVQESALQAQVRKLEGDLEHRGRKISDLKKYAQKLKERIQDLDVQLREARQENSELKSTARKLGEKLAIAKDRLMLQECHVTGKTDDMKTENDVLRKTNDQEACNLHPQQDQGFPKLCHCNKRGSEAQIKTEASGELERLKQKYEEDLRKVRHQTEEEKQQLQEELGKRLEELVKKHTVEMKSVRSSVEVERKKLKEVEAQLEEVKTKSEREIKQLEDEKAALSVKLQNSLLEDPCSMSKEPSQILPREEDLEKLTAEEGTSSDEEEERIGEPLKDGHDLQPPLCSVLKEKAVEIGYRPEDWQNQKPKLQTQVAACCNKESGHSLQIQHQAHLPELQVLEKARQELQEEHEQTQAQQLLLLESLRQELTEQQAACSEHQKALEMLQKEQRVLGPLGKWQAINQCSGNGTDHTFITEDVGVAGPPGSVPCAAEKGLLEENAQLQDTVLRLRAEVEQHLQEALQLREQHRLLEEDQKAQRAMEVEALHQEHRKEMQAMVADFSGAQARLQARLAALEAELKDSGEKPGKGTSRPEDLQLIGRLQTRLKEREDIIRQLTEERRFHYAAFPGAMSHRNRSFSFNPHPGYLTPSMKKKKMEEVPSRVVSVPNLASYAKNFLSGDLSSRINAPPITKSPSLDPSPSCGQPYKPTQLLDGKTATRAQDGEPSQAKEAPQKQGSPHQEWFTKYFSF", "length": 950, "header": "tr|A0A9J7HAY0-1|A0A9J7HAY0_CRIGR Isoform 1 of Protein FAM184B OS=Cricetulus griseus OX=10029 GN=Fam184b PE=4 SV=1 CANONICAL=A0A9J7HAY0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HAY0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAY0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HAY0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAY0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100768354", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768354", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 669, "end_pos": 671, "annotation": "n_glycosylation_sequon" }, { "start_pos": 836, "end_pos": 838, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7HAY0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAY0" }, { "id": "PF15665", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15665" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Protein FAM184A/B N-terminal", "eco_id": "ECO_0000259", "start_pos": 50, "end_pos": 172, "start_aa": "Val", "end_aa": "His", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 669, "end_pos": 671 }, { "start_pos": 836, "end_pos": 838 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7HAZ5-1", "uniprot_ac": "A0A9J7HAZ5", "uniprot_id": "A0A9J7HAZ5_CRIGR", "mass": { "chemical_mass": 338998.0, "monoisotopic_mass": 338998.0 }, "refseq": { "ac": "XP_035308896", "name": "testis-expressed protein 15 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308896" }, "gene_names": [ { "name": "Tex15", "type": "recommended", "evidence": [ { "id": "A0A9J7HAZ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAZ5" } ] }, { "name": "Tex15", "type": "synonym", "evidence": [ { "id": "XP_035308896", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308896" } ] } ], "protein_names": [ { "name": "Testis-expressed protein 15 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7HAZ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAZ5/entry#names_and_taxonomy" } ] }, { "name": "testis-expressed protein 15 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035308896", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308896" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 3% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035308896", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308896" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HAZ5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAZ5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tex15", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAZ5", "locus": {} } ], "crossref": [ { "id": "100757105", "url": "https://www.ncbi.nlm.nih.gov/gene/100757105", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR022188", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022188", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR026616", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026616", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032765", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032765", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100757105", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757105", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HAZ5", "url": "https://www.orthodb.org/?gene=A0A9J7HAZ5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22380", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22380", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22380:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22380:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12509", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12509", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF15326", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15326", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035308896", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308896", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HAZ5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAZ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HAZ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAZ5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HAZ5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAZ5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HAZ5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAZ5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100757105", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757105", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HAZ5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HAZ5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "synaptonemal complex assembly", "id": "GO:0007130", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007130", 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8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613589.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035308246", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308246" } ] }, { "annotation": "May be involved in the regulation of spermatogenesis and sperm maturation.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HB10", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HB10#function" }, { "database": "UniProtKB", "id": "ARBA00059537", "url": "https://www.uniprot.org/uniprotkb/ARBA00059537#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HB10", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HB10" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Lrrc18", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HB10", "locus": {} } ], "crossref": [ { "id": "A0A9J7HB10", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HB10", "database": "AlphaFoldDB", "categories": [] }, { "id": "100771155", "url": "https://www.ncbi.nlm.nih.gov/gene/100771155", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003591", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003591", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050216", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050216", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055414", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055414", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100771155", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771155", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HB10", "url": "https://www.orthodb.org/?gene=A0A9J7HB10", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48051", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48051", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48051:SF42", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48051:SF42", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00560", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00560", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23598", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23598", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035308246", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308246", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HB10", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HB10", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HB10-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HB10-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAKGGKVPKGKKITLNVAKNCIKITFDGRKRLDLSKMGITTFPKCILRLNEVDELDLSRNMIRKIPDSISKFQNLRWLDLHSNYIDKLPESIGQMTTLLYLNVSNNRLTTNGLPVELNQLKNIRTVNLGLNHLDSVPTTLGALKDLHEVGLNDNLLSSIPASISKLPKLKKLNLKRNPFPKTEESDAFVDSIKRLENLYLVEEKDMCASCLQKCQRARDKLNKIKNMPPIAPRKAIFSNLVSPNSTAKESQEEWR", "length": 255, "header": "tr|A0A9J7HB10-1|A0A9J7HB10_CRIGR Isoform 1 of Leucine-rich repeat-containing protein 18 OS=Cricetulus griseus OX=10029 GN=Lrrc18 PE=4 SV=1 CANONICAL=A0A9J7HB10-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HB10-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HB10/entry#A0A9J7HB10-1", "sequence": { "sequence": "MAKGGKVPKGKKITLNVAKNCIKITFDGRKRLDLSKMGITTFPKCILRLNEVDELDLSRNMIRKIPDSISKFQNLRWLDLHSNYIDKLPESIGQMTTLLYLNVSNNRLTTNGLPVELNQLKNIRTVNLGLNHLDSVPTTLGALKDLHEVGLNDNLLSSIPASISKLPKLKKLNLKRNPFPKTEESDAFVDSIKRLENLYLVEEKDMCASCLQKCQRARDKLNKIKNMPPIAPRKAIFSNLVSPNSTAKESQEEWR", "length": 255, "header": "tr|A0A9J7HB10-1|A0A9J7HB10_CRIGR Isoform 1 of Leucine-rich repeat-containing protein 18 OS=Cricetulus griseus OX=10029 GN=Lrrc18 PE=4 SV=1 CANONICAL=A0A9J7HB10-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7HB10", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HB10" }, { "id": "PF23598", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23598" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Disease resistance R13L4/SHOC-2-like LRR", "eco_id": "ECO_0000259", "start_pos": 72, "end_pos": 202, "start_aa": "Phe", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 102, "end_pos": 104 }, { "start_pos": 244, "end_pos": 246 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7HB22-1", "uniprot_ac": "A0A9J7HB22", "uniprot_id": "A0A9J7HB22_CRIGR", "mass": { "chemical_mass": 42196.0, "monoisotopic_mass": 42196.0 }, "refseq": { "ac": "XP_035307243", "name": "uncharacterized protein LOC113832936", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307243" }, "gene_names": [ { "name": "LOC113832936", "type": "recommended", "evidence": [ { "id": "A0A9J7HB22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HB22" } ] }, { "name": "LOC113832936", "type": "synonym", "evidence": [ { "id": "XP_035307243", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307243" } ] } ], "protein_names": [ { "name": "Uncharacterized protein LOC113832936", "type": "synonym", "evidence": [ { "id": "A0A9J7HB22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HB22/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein LOC113832936", "type": "synonym", "evidence": [ { "id": "XP_035307243", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307243" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 42% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035307243", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307243" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HB22", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HB22" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113832936", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HB22", "locus": {} } ], "crossref": [ { "id": "A0A9J7HB22", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HB22", "database": "AlphaFoldDB", "categories": [] }, { "id": "113832936", "url": "https://www.ncbi.nlm.nih.gov/gene/113832936", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000840", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000840", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003036", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003036", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008919", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008919", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR010999", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010999", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036946", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036946", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040643", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040643", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050462", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050462", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113832936", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113832936", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HB22", "url": "https://www.orthodb.org/?gene=A0A9J7HB22", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR33166", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33166", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01140", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01140", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02093", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02093", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF18697", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18697", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035307243", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307243", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HB22", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HB22", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HB22-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HB22-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAITCNSRRLVRASAPVPPRFPPPPASTSPVAARPAAGSLQSWPTPGLGPSEEPSRRPEGRAPGGLARGQAPDGPDRGPAPAPPPDGEHSYTAVYICIWRLRGGTDEFGLPTAAPGDVLVAIEALGLETMGQTVTTPLSLTLSHWRDVQEYAHNQSVDVRKREDYGSWTTRASRSSGLYRHLGGFGSGPPSLDPVRLTSLIESVLTTHQPTWDDCQQLLQVLLTSEEKQRVLLEARKNVPGANGQPTQLPNEIDAACPLERPEWDFTTEAAHLQALQLVQREVWKPLAQAYKDQRDHPAIPHSYQIGDTVWVRRHQTKNLEPRWKGPYIVLLTTPTALKVDGIAAWIHASHVKPARPTDSATASEWTAHRTQNPLKIRLSRTPSY", "length": 385, "header": "tr|A0A9J7HB22-1|A0A9J7HB22_CRIGR Isoform 1 of Uncharacterized protein LOC113832936 OS=Cricetulus griseus OX=10029 GN=LOC113832936 PE=4 SV=1 CANONICAL=A0A9J7HB22-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HB22-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HB22/entry#A0A9J7HB22-1", "sequence": { "sequence": "MAITCNSRRLVRASAPVPPRFPPPPASTSPVAARPAAGSLQSWPTPGLGPSEEPSRRPEGRAPGGLARGQAPDGPDRGPAPAPPPDGEHSYTAVYICIWRLRGGTDEFGLPTAAPGDVLVAIEALGLETMGQTVTTPLSLTLSHWRDVQEYAHNQSVDVRKREDYGSWTTRASRSSGLYRHLGGFGSGPPSLDPVRLTSLIESVLTTHQPTWDDCQQLLQVLLTSEEKQRVLLEARKNVPGANGQPTQLPNEIDAACPLERPEWDFTTEAAHLQALQLVQREVWKPLAQAYKDQRDHPAIPHSYQIGDTVWVRRHQTKNLEPRWKGPYIVLLTTPTALKVDGIAAWIHASHVKPARPTDSATASEWTAHRTQNPLKIRLSRTPSY", "length": 385, "header": "tr|A0A9J7HB22-1|A0A9J7HB22_CRIGR Isoform 1 of Uncharacterized protein LOC113832936 OS=Cricetulus griseus OX=10029 GN=LOC113832936 PE=4 SV=1 CANONICAL=A0A9J7HB22-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 45, "start_aa": "Thr", "end_pos": 45, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr45", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HB22", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HB22" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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"MNIFKIFLIWGVFSNIVADIQILINPVNLPENSLPGTELSRAYDKDVAGKPNAYRFLNKTKDFVIDENSGVITATKIFNYETDPTRFLFIVDTGGIMRHVLTINIIDVPEPPDCTADPLFSSGSATFEIAEDYPLFQSIYRVNVTDEDIAHGDRLTYSIETELSGPKRGANSFGVDPVNGIVSLRGEDALDFDAGYHTFQLSVRATDSAGLFCQGTIIINIRNINDETPQFEPFPMDSINVTEKKPTGSFLARVKATDRDKDSSIMYSFKTQQEMFGLDPFTGVITVLQSLNLDNPSNSRTYSLEIEARDDGNNTSSYMFTVFVENVDDPISCDPKFSKGAGVSVSVAENTPSSAFIYAILSRDPDLGQEVEFFQLVIAVRNRDSLSLESCVGTITINIQNVNDESPVLIYKPDAPLIINENLPVGTKLAKFTATDRDIEDTVHYEFISIQKEFAINEDFGDVTVAYPLDYEDVTTPKSWVLYVRVYDNERTHSTTGTFTVILQDVNDNPPRCSQDIYVIELPENIPVDTSLVSLTCTDLDGTIPNNNVTYHLIKDTFSNKTFTLTKNELKIGPMHLDYDNSVFSEMDFKYTLFIRVSDEGIPALSTIIRIILRVSRINEHSPIGTMMAFTFSVFENSPIDTLVGKITYTDGDWPFNNIQYAIVGGNFGIPPKFYIESDSGMIKLLNSVDRETVSQYKIAVRITDVANDALPDPIRQRSSTAQVTIHVLNVNDEPPVCSPPHLEIQMYARFRGPLIRLNCLDKDSPQNHLSYSITEGNTNNQFTLWREGAESPFLATGQHFQDDLFQGTQDGVTFQLLIEVTDELGENSASQLTATTTVIIHVLPWTTTQPTSSRKITPTTITTSVLRKISYYWSPDTWFPAVFTLTGALFLMCLYAVAWCLFKDVPACSRLFPWCHRQQSQPCLTEKEAAQGLRYENSLSVVTQPNSRPNLLPGNYK", "length": 958, "header": 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analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035308764", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308764" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HBA3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBA3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113832398", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBA3", "locus": {} } ], "crossref": [ { "id": "A0A9J7HBA3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HBA3", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd09273", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09273", "database": "CDD", "categories": [ "Protein 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"locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"MPGEAARAELPLPEAGGPGSRTDLSCDAAIATILKGDQQEPLPLTPGPSPLALAFLSSKPGARPQPEGASWDAGPSGAASTWVDPAEGSPSPGVLPEGLPLQPLPAEVPLPTTLEPRIVMGEETCQVTPLPRAAWPVLRDREGGHMALHPPPELCSQGDPPVPSPPPDLDSYFTPPSTPTKTTYALLPDHGPHRDTWDLEAELLDELLDSTPASPSGSYITADGDSWASSPSCSLSLLAPAEGLDFPSDWGLSPSGSVVDELEPQPTEAPEPPSSESSLSTDSSSSWSQEGHFFDPTFLANDPMIPAALLPFRGSLIFQVEAVEVTPLPQEEEEEEVVAGAATPDGDLAGEGEDDSTSASFLQSLSDLSIIEGMDEAFAFRDDTSAASSDSDSASYAGADDDRLYSGEPHAQPSAQNTEQEHRSRATFQGTEFMPQISEQETCLTNSQESIADIAEEAPTLGIESEATVTLPDLQEAPGPQMEGATTVTPRVGNKEVDSVAQQAPRALPEPCRKGMGTSSGCKPVTVESILDLQEEASPTLCPILPANLKEGGQGLPSTLEYVTVASVRPQKAEGGITIPQDHPMTLPPFLQCVDPTSGPESVAVVTLRLQQDKGCVIALQEAPVASPLPLQSTDPTSGPESRAVATCGPQQAKEGTTAPQDSPMASSPPPQGSEPTSDPEPEAVVTLGSQQAKEGTTAPQDSPMASSPPPQGSEPTSDPEPEAVVTLGSQQAKEDTTAPQDSPMASSPPPQGSEPTSDPEPEAVVTLGYQQDKGTTAPHGSPMACLSLQGSDPTPDPESELAAILEPQQAKEGVTIPQLAPVASPSPLRSLDSILDLQPVATATLESQQAKGSTTVPQDTFVVAPPSLQGTDSTSEPELIVQDTSPALQRETCYTPEIKPSASEAHQELGVALGPKPVPEEQDSEPTLDSALTTSNQAQQNGSQPAVKADNAGAPEESCPTLSTKVSEPISCMGEKVAESIPALRQGAHLEAHGGVKTCSPQREAPGAKNKRGRCPKPLGQGNGSKSASQGAGKTSKAQSASCTEVSQTQLMSLAREGRGLNSKDTLGPKLPVALSVQARLGSCPDSPARATCTLSGVHSEETARSAQSFEQLEPVLGLGSRDQPQTTPGALNPSPANSVSDLPTTPQDRSLDPDPPASNDLNRASQTSPGPPASCLCPTPQKASVEEEEPSASHGLMPRAGAQGTAAITTSGSTMPLGARHRVSLSPHSTLNPKVTPTDAKDLACIISSPCQVPPPSGTQNPSGPRGFPAHQQEDEDSLEEDSSQGDTTGWDWRNLGNSKRPSYLTPFPDSQRAPGSGQHSDSQGESSAELDEQEIPSQKAQCPAQGPTGSNEETIAKAKQSRSEKKARKAMSKLGLRQIQGVTRITIQKSKNILFVIAKPDVFKSPASDTYVVFGEAKIEDLSQQVHKAAAEKFKVPSESSALVPELAPGPRVRPQCEEQEEEDEEVEEAGLELRDIELVMAQANVSRAKAVRALRDNHSDIVNAIMELTM", "length": 1514, "header": "tr|A0A9J7HBD0-1|A0A9J7HBD0_CRIGR Isoform 1 of NAC-alpha domain-containing protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Nacad PE=4 SV=1 CANONICAL=A0A9J7HBD0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HBU8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBD0/entry#A0A9J7HBU8-1", "sequence": { "sequence": "MSFSVSTDLSCDAAIATILKGDQQEPLPLTPGPSPLALAFLSSKPGARPQPEGASWDAGPSGAASTWVDPAEGSPSPGVLPEGLPLQPLPAEVPLPTTLEPRIVMGEETCQVTPLPRAAWPVLRDREGGHMALHPPPELCSQGDPPVPSPPPDLDSYFTPPSTPTKTTYALLPDHGPHRDTWDLEAELLDELLDSTPASPSGSYITADGDSWASSPSCSLSLLAPAEGLDFPSDWGLSPSGSVVDELEPQPTEAPEPPSSESSLSTDSSSSWSQEGHFFDPTFLANDPMIPAALLPFRGSLIFQVEAVEVTPLPQEEEEEEVVAGAATPDGDLAGEGEDDSTSASFLQSLSDLSIIEGMDEAFAFRDDTSAASSDSDSASYAGADDDRLYSGEPHAQPSAQNTEQEHRSRATFQGTEFMPQISEQETCLTNSQESIADIAEEAPTLGIESEATVTLPDLQEAPGPQMEGATTVTPRVGNKEVDSVAQQAPRALPEPCRKGMGTSSGCKPVTVESILDLQEEASPTLCPILPANLKEGGQGLPSTLEYVTVASVRPQKAEGGITIPQDHPMTLPPFLQCVDPTSGPESVAVVTLRLQQDKGCVIALQEAPVASPLPLQSTDPTSGPESRAVATCGPQQAKEGTTAPQDSPMASSPPPQGSEPTSDPEPEAVVTLGSQQAKEGTTAPQDSPMASSPPPQGSEPTSDPEPEAVVTLGSQQAKEDTTAPQDSPMASSPPPQGSEPTSDPEPEAVVTLGYQQDKGTTAPHGSPMACLSLQGSDPTPDPESELAAILEPQQAKEGVTIPQLAPVASPSPLRSLDSILDLQPVATATLESQQAKGSTTVPQDTFVVAPPSLQGTDSTSEPELIVQDTSPALQRETCYTPEIKPSASEAHQELGVALGPKPVPEEQDSEPTLDSALTTSNQAQQNGSQPAVKADNAGAPEESCPTLSTKVSEPISCMGEKVAESIPALRQGAHLEAHGGVKTCSPQREAPGAKNKRGRCPKPLGQGNGSKSASQGAGKTSKAQSASCTEVSQTQLMSLAREGRGLNSKDTLGPKLPVALSVQARLGSCPDSPARATCTLSGVHSEETARSAQSFEQLEPVLGLGSRDQPQTTPGALNPSPANSVSDLPTTPQDRSLDPDPPASNDLNRASQTSPGPPASCLCPTPQKASVEEEEPSASHGLMPRAGAQGTAAITTSGSTMPLGARHRVSLSPHSTLNPKVTPTDAKDLACIISSPCQVPPPSGTQNPSGPRGFPAHQQEDEDSLEEDSQRAPGSGQHSDSQGESSAELDEQEIPSQKAQCPAQGPTGSNEETIAKAKQSRSEKKARKAMSKLGLRQIQGVTRITIQKSKNILFVIAKPDVFKSPASDTYVVFGEAKIEDLSQQVHKAAAEKFKVPSESSALVPELAPGPRVRPQCEEQEEEDEEVEEAGLELRDIELVMAQANVSRAKAVRALRDNHSDIVNAIMELTM", "length": 1471, "header": "tr|A0A9J7HBU8-1|A0A9J7HBU8_CRIGR Computationally mapped isoform of NAC-alpha domain-containing protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Nacad PE=4 SV=1 CANONICAL=A0A9J7HBD0-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1181, "start_aa": "Thr", "end_pos": 1181, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1181", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1240, "start_aa": "Thr", "end_pos": 1240, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1240", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1351, "start_aa": "Thr", "end_pos": 1351, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1351", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 489, "start_aa": "Thr", "end_pos": 489, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr489", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 597, "start_aa": "Thr", "end_pos": 597, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr597", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 795, "start_aa": "Thr", "end_pos": 795, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr795", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HBD0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBD0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HBD0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBD0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100769774", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769774", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "transcription coactivator activity", "id": "GO:0003713", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003713", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HBD0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBD0" } ], "pmid": "" }, { "name": "TBP-class protein binding", "id": "GO:0017025", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017025", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HBD0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBD0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "myoblast migration", "id": "GO:0051451", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051451", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HBD0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBD0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nascent polypeptide-associated complex", "id": "GO:0005854", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005854", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HBD0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBD0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1024, "end_pos": 1026, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1488, "end_pos": 1490, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1501, "end_pos": 1503, "annotation": "n_glycosylation_sequon" }, { "start_pos": 942, "end_pos": 944, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7HBD0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBD0" }, { "id": "PS51151", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51151" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "NAC-A/B", "eco_id": "ECO_0000259", "start_pos": 1364, "end_pos": 1429, "start_aa": "Ser", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 489, 597, 795, 1181, 1240, 1351 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1024, "end_pos": 1026 }, { "start_pos": 1488, "end_pos": 1490 }, { "start_pos": 1501, "end_pos": 1503 }, { "start_pos": 942, "end_pos": 944 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 6 }, { "field": "total_sites", "count": 6 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 6 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 6 }, { "field": "exact_o_linked_sites", "count": 6 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": 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"total", "count": 6 }, { "field": "total_sites", "count": 6 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 6 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 6 }, { "field": "exact_o_linked_sites", "count": 6 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7HBD3-1", "uniprot_ac": "A0A9J7HBD3", "uniprot_id": "A0A9J7HBD3_CRIGR", "mass": { "chemical_mass": 23375.0, "monoisotopic_mass": 23375.0 }, "refseq": { "ac": "XP_035308965", "name": "placenta-specific protein 9", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308965" }, "gene_names": [ { "name": "Plac9", "type": "recommended", "evidence": [ { "id": "A0A9J7HBD3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBD3" } ] }, { "name": "Plac9", "type": "synonym", "evidence": [ { "id": "XP_035308965", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308965" } ] } ], "protein_names": [ { "name": "Placenta-specific protein 9", "type": "synonym", "evidence": [ { "id": "A0A9J7HBD3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBD3/entry#names_and_taxonomy" } ] }, { "name": "placenta-specific protein 9", "type": "synonym", "evidence": [ { "id": "XP_035308965", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308965" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 50% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035308965", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308965" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HBD3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBD3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Plac9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBD3", "locus": {} } ], "crossref": [ { "id": "A0A9J7HBD3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HBD3", "database": "AlphaFoldDB", "categories": [] }, { "id": "100754984", "url": "https://www.ncbi.nlm.nih.gov/gene/100754984", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR027941", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027941", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100754984", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754984", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HBD3", "url": "https://www.orthodb.org/?gene=A0A9J7HBD3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR37355", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37355", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR37355:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37355:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15205", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15205", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035308965", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308965", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HBD3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBD3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HBD3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBD3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQPLLCALAGLALLGVEAGEWGQGPRDTPGRRAAESSSSSREDIAWSPGCDRHVAVQGRLDIMEETVEKTVEHLEAEVTGLLGLLEELASNLPPGPFSPEPDLLGGGEWLRRQRDTCWACHLGPLAAGGARTHRGCYAAVPGTELVVAHHPIGVLGPGILSELRPSPAPVLTPVFWYCCPKRLGSWREDIGGHSILSCSLRAHPLLQITSDHQGAVEPGS", "length": 220, "header": "tr|A0A9J7HBD3-1|A0A9J7HBD3_CRIGR Isoform 1 of Placenta-specific protein 9 OS=Cricetulus griseus OX=10029 GN=Plac9 PE=4 SV=1 CANONICAL=A0A9J7HBD3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HBD3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBD3/entry#A0A9J7HBD3-1", "sequence": { "sequence": "MQPLLCALAGLALLGVEAGEWGQGPRDTPGRRAAESSSSSREDIAWSPGCDRHVAVQGRLDIMEETVEKTVEHLEAEVTGLLGLLEELASNLPPGPFSPEPDLLGGGEWLRRQRDTCWACHLGPLAAGGARTHRGCYAAVPGTELVVAHHPIGVLGPGILSELRPSPAPVLTPVFWYCCPKRLGSWREDIGGHSILSCSLRAHPLLQITSDHQGAVEPGS", "length": 220, "header": "tr|A0A9J7HBD3-1|A0A9J7HBD3_CRIGR Isoform 1 of Placenta-specific protein 9 OS=Cricetulus griseus OX=10029 GN=Plac9 PE=4 SV=1 CANONICAL=A0A9J7HBD3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7HBE7-1", "uniprot_ac": "A0A9J7HBE7", "uniprot_id": "A0A9J7HBE7_CRIGR", "mass": { "chemical_mass": 23487.0, "monoisotopic_mass": 23487.0 }, "refseq": { "ac": "XP_035309002", "name": "phosphatidylethanolamine-binding protein 4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309002" }, "gene_names": [ { "name": "Pebp4", "type": "recommended", "evidence": [ { "id": "A0A9J7HBE7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBE7" } ] }, { "name": "Pebp4", "type": "synonym", "evidence": [ { "id": "XP_035309002", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309002" } ] } ], "protein_names": [ { "name": "Phosphatidylethanolamine-binding protein 4", "type": "synonym", "evidence": [ { "id": "A0A9J7HBE7", "database": "UniProtKB", "url": 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This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035309002", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309002" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HBE7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBE7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Pebp4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBE7", "locus": {} } ], "crossref": [ { "id": "A0A9J7HBE7", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HBE7", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00866", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00866", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100751985", "url": "https://www.ncbi.nlm.nih.gov/gene/100751985", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001858", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001858", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008914", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008914", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035810", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035810", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036610", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036610", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100751985", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751985", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HBE7", "url": "https://www.orthodb.org/?gene=A0A9J7HBE7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11362", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11362", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11362:SF82", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11362:SF82", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01161", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01161", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035309002", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309002", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HBE7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBE7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HBE7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBE7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSMKMGAVALCFCLLAAAVWLGLSMTTSESLEVFYPEVGNISCKIVPQCNEYRQKIQMWSEPIVKFPEALDDTQYLLVMVDPDAPSRHDNRAKYWRHWVVSNIKGSDIKAGNIRGNVITDYQPPSPPPTTGLHRYQFFVYLQGDRDISIPTKENRNRASWKLEKFLQDHKLQSHESSTQYMTEHDDTVLQYYKMNEAKGKSSET", "length": 204, "header": "tr|A0A9J7HBE7-1|A0A9J7HBE7_CRIGR Isoform 1 of Phosphatidylethanolamine-binding protein 4 OS=Cricetulus griseus OX=10029 GN=Pebp4 PE=3 SV=1 CANONICAL=A0A9J7HBE7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HBE7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBE7/entry#A0A9J7HBE7-1", "sequence": { "sequence": "MSMKMGAVALCFCLLAAAVWLGLSMTTSESLEVFYPEVGNISCKIVPQCNEYRQKIQMWSEPIVKFPEALDDTQYLLVMVDPDAPSRHDNRAKYWRHWVVSNIKGSDIKAGNIRGNVITDYQPPSPPPTTGLHRYQFFVYLQGDRDISIPTKENRNRASWKLEKFLQDHKLQSHESSTQYMTEHDDTVLQYYKMNEAKGKSSET", "length": 204, "header": "tr|A0A9J7HBE7-1|A0A9J7HBE7_CRIGR Isoform 1 of Phosphatidylethanolamine-binding protein 4 OS=Cricetulus griseus OX=10029 GN=Pebp4 PE=3 SV=1 CANONICAL=A0A9J7HBE7-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 129, "start_aa": "Thr", "end_pos": 129, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr129", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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analysis. 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This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035308966", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308966" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HBN4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBN4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113838173", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBN4", "locus": {} } ], "crossref": [ { "id": "113838173", "url": "https://www.ncbi.nlm.nih.gov/gene/113838173", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007081", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007081", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015700", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015700", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113838173", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113838173", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HBN4", "url": "https://www.orthodb.org/?gene=A0A9J7HBN4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48446", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48446", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48446:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48446:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04998", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04998", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035308966", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308966", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HBN4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBN4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HBN4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBN4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVQSTTGDIIQFIYGGDGLDPAAMEGKDEPLEFKRVLDNIKAVYPCQSESALSKNELTLTTEAIMKKNEFLCCQDSFLQEIKTFIKGVSEKIKKTRDKYGINDNGTTEPRVLYQLDRITPTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKKIINASKAISTPIITAQLDKDDDADYACLVKGRTEKTLLGEISEYIEEVFLPDDCFILVKLSLERIRLLRLEVNAETVRYSICTSKLRVKPGDVAVHGEAVVCVXPRENSKSSMYYVLQFLKEDLPKVVVQGIPEVSRAVIHIDEQSGKEKFKLLVEGDNLRAVMATHGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMLL", "length": 426, "header": "tr|A0A9J7HBN4-1|A0A9J7HBN4_CRIGR Isoform 1 of DNA-directed RNA polymerase OS=Cricetulus griseus OX=10029 GN=LOC113838173 PE=4 SV=1 CANONICAL=A0A9J7HBN4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HBN4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBN4/entry#A0A9J7HBN4-1", "sequence": { "sequence": "MAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVQSTTGDIIQFIYGGDGLDPAAMEGKDEPLEFKRVLDNIKAVYPCQSESALSKNELTLTTEAIMKKNEFLCCQDSFLQEIKTFIKGVSEKIKKTRDKYGINDNGTTEPRVLYQLDRITPTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKKIINASKAISTPIITAQLDKDDDADYACLVKGRTEKTLLGEISEYIEEVFLPDDCFILVKLSLERIRLLRLEVNAETVRYSICTSKLRVKPGDVAVHGEAVVCVXPRENSKSSMYYVLQFLKEDLPKVVVQGIPEVSRAVIHIDEQSGKEKFKLLVEGDNLRAVMATHGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMLL", "length": 426, "header": "tr|A0A9J7HBN4-1|A0A9J7HBN4_CRIGR Isoform 1 of DNA-directed RNA polymerase OS=Cricetulus griseus OX=10029 GN=LOC113838173 PE=4 SV=1 CANONICAL=A0A9J7HBN4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [ "enzyme" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HBN4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBN4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HBN4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBN4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:113838173", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113838173", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HBN4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBN4" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HBN4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBN4" } ], "pmid": "" }, { "name": "DNA-directed RNA polymerase activity", "id": "GO:0003899", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003899", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HBN4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBN4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HBN4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBN4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 141, "end_pos": 143, "annotation": "n_glycosylation_sequon" }, { "start_pos": 211, "end_pos": 213, "annotation": "n_glycosylation_sequon" }, { "start_pos": 224, "end_pos": 226, "annotation": "n_glycosylation_sequon" }, { "start_pos": 398, "end_pos": 400, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7HBN4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBN4" }, { "id": "PF04998", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04998" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RNA polymerase Rpb1", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 424, "start_aa": "Met", "end_aa": "Met", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [ { "ec_number": "2.7.7.6", "ec_name": "RNA(n) + a ribonucleoside 5'-triphosphate = RNA(n+1) + diphosphate.", "evidence": [ { "id": "2.7.7.6", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/?query=ec:2.7.7.6" }, { "id": "2.7.7.6", "database": "BRENDA Enzymes", "url": 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Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 2% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035307238", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307238" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HBN6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBN6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Naaladl2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBN6", "locus": {} } ], "crossref": [ { "id": "A0A9J7HBN6", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HBN6", "database": "AlphaFoldDB", "categories": [] }, { "id": "100761363", "url": "https://www.ncbi.nlm.nih.gov/gene/100761363", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": 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"http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10404:SF32", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_035307238", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307238", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HBN6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBN6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HBN6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBN6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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analysis. 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035305185", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305185" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HBT3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBT3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC118239332", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBT3", "locus": {} } ], "crossref": [ { "id": "A0A9J7HBT3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HBT3", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd20972", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20972", "database": "CDD", "categories": [ "Protein 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This record is derived from a genomic sequence (NW_003613622.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003496485", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003496485" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HBY1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBY1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Miga1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBY1", "locus": {} } ], "crossref": [ { "id": "A0A9J7HBY1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HBY1", "database": "AlphaFoldDB", "categories": [] }, { "id": "100758334", "url": "https://www.ncbi.nlm.nih.gov/gene/100758334", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019392", 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Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KEH0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEH0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KEH0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEH0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100758334", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758334", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2K2T2-1", "protein_name": "Mitoguardin 1", "gene_name": "Miga1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": 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"MSEEAVTEARFSLKTVALRAFHLPVSWYHSLTQIKLSPGLKKLFTVTAVSAISVIFLAHHFKRKRGRKNKQVSPWEPGHLLLECTKAAASEKGSSCSSSRQNLTLSLSSAKEKGSQSCIYANGGLFSKYSGSVQSLVSSATSCHSCACANSNSWDKADEEDIKLVNIPVTTPENLYLMGMELFEEALRRWEQALTFRNRQVEDEASCSSIKLGAGDAIAEESVEDIISAEFIHKLESLLQRAYRLQEEFEATLGTSDPASLANDIDKNTDITVKDNTDDFCLRDTLSIASTDSFVSTAELTEHREARNTYGLDSLCHCPLYEEAMHLAEEGKIYSRVLRTEMFECLGDSDFLAKLHCIRQAFQIILSETANRIFLAESGRKILSALIVRARKNPKKFEDVFDEMIYFLEQTDHWDNTEMELAARGVKNLNFYDVVLDFILMDSFEDLENPPISIQNVVNNRWLNSSFKETAVASSCWSVLKQKRQQMKVPDGFFAHFYAICEHISPVLAWGFLGPRNSLYDLCCFFKDQVLFFLKDIFDFEKVRYSTMESLAEDLMQLLIRRTELLMAYLGADSLRHASACVSGHGHVMTSGLLEAKVQ", "length": 599 }, "evidence": [ { "id": "A0A9J7HBY1", "url": "https://omabrowser.org/oma/group/A0A9J7HBY1/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q4QQM5-1", "protein_name": "Mitoguardin 1", "gene_name": "Miga1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSDETVSRSQFSLKTYAVRVFALPVSWYYSLSQIKFSPVAKKLFMVTAVSAVSVIFLAHHFKRRRGKQKGKVLPWEPEHLLLEHTRRAASEKGSSCSSSRQNLTLSLSSTKEKGSQCCNYPNGGLLSRYSGSAQSLGSVQSVNSCHSCACGNSNSWDKADDDDIRLVNIPVTTPENLYLMGMELFEEALRRWEQALTFRSRQAEDEACSSVKLGAGDAIAEESVDDIISSEFIHKLEALLQRAYRLQEEFEATLGGSDPNSIANDTDKDTDMSLRETMDELGLPDAMNMDSADLFASATELAEQREAQQTFSLESFCPCPFYEEAMHLVEEGKIYSRVLRTEMLECLGDSDFLAKLHCIRQAFQLILAEADNRSFLAESGRKILSALIVKARKNPKKFQDVFDEMINFLEQTDHWDSTELELAARGVKNLNFYDVVLDFILMDSFEDLENPPTSIQSVVNNRWLNSSFKESAVASSCWSVLKQKRQQMKISDGFFAHFYAICEHVSPVLAWGFLGPRNSLYDLCCFFKNQVLFFLKDIFDFEKVRYSSIDTLAEDLTHLLIRRTELLVTCLGADALRHATTCTSGHSHAVPTALLEAKVQ", "length": 600 }, "evidence": [ { "id": "A0A9J7HBY1", "url": "https://omabrowser.org/oma/group/A0A9J7HBY1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrial outer membrane", "id": "GO:0005741", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005741", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HBY1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBY1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "mitochondrial fusion", "id": "GO:0008053", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008053", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HBY1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBY1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 102, "end_pos": 104, "annotation": "n_glycosylation_sequon" }, { "start_pos": 119, "end_pos": 121, "annotation": "n_glycosylation_sequon" }, { "start_pos": 264, "end_pos": 266, "annotation": "n_glycosylation_sequon" }, { "start_pos": 464, "end_pos": 466, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], 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] }, { "uniprot_canonical_ac": "A0A9J7HC06-1", "uniprot_ac": "A0A9J7HC06", "uniprot_id": "A0A9J7HC06_CRIGR", "mass": { "chemical_mass": 27989.0, "monoisotopic_mass": 27989.0 }, "refseq": { "ac": "XP_035308773", "name": "uncharacterized protein LOC118238834 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308773" }, "gene_names": [ { "name": "LOC118238834", "type": "recommended", "evidence": [ { "id": "A0A9J7HC06", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HC06" } ] }, { "name": "LOC118238834", "type": "synonym", "evidence": [ { "id": "XP_035308773", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308773" } ] } ], "protein_names": [ { "name": "Uncharacterized protein LOC118238834 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7HC06", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HC06/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein LOC118238834 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This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035308773", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308773" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HC06", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HC06" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC118238834", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HC06", "locus": {} } ], "crossref": [ { "id": "A0A9J7HC06", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HC06", "database": "AlphaFoldDB", "categories": [] }, { "id": "118238834", "url": "https://www.ncbi.nlm.nih.gov/gene/118238834", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:118238834", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118238834", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_035308773", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308773", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HC06", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HC06", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HC06-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HC06-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KC82", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KC82", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KC82-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KC82-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKFRPQKMMASSTDEKEQCVTVCAQAPLICVEHFTEQVHRHACVLQSESRDKTRILKSCERSVGSGHSDLGQGWGSSVMMGESVLDKQGRAWMWSCVLCARLSRESTDVELCVKAESFVSSVFTCFICNRALPRGPAPSCLLVVANLFTVFPVKWLDADPTQHNGLFLMKLPKWSDFPEEGDMWAHDLGGFSPGKPRRGGESTATEERRHLLTLWTQEGKGSLSGEVSEFGDQDVGLSTPSAAPCLPACHRVLP", "length": 254, "header": "tr|A0A9J7HC06-1|A0A9J7HC06_CRIGR Isoform 1 of Uncharacterized protein LOC118238834 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC118238834 PE=4 SV=1 CANONICAL=A0A9J7HC06-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HC06-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HC06/entry#A0A9J7HC06-1", "sequence": { "sequence": "MKFRPQKMMASSTDEKEQCVTVCAQAPLICVEHFTEQVHRHACVLQSESRDKTRILKSCERSVGSGHSDLGQGWGSSVMMGESVLDKQGRAWMWSCVLCARLSRESTDVELCVKAESFVSSVFTCFICNRALPRGPAPSCLLVVANLFTVFPVKWLDADPTQHNGLFLMKLPKWSDFPEEGDMWAHDLGGFSPGKPRRGGESTATEERRHLLTLWTQEGKGSLSGEVSEFGDQDVGLSTPSAAPCLPACHRVLP", "length": 254, "header": "tr|A0A9J7HC06-1|A0A9J7HC06_CRIGR Isoform 1 of Uncharacterized protein LOC118238834 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC118238834 PE=4 SV=1 CANONICAL=A0A9J7HC06-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KC82-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HC06/entry#A0A9J7KC82-1", "sequence": { "sequence": "MVCATMPGSLFHFQRMPEILLTQHHPFICSLISFYSGPAPSCLLVVANLFTVFPVKWLDADPTQHNGLFLMKLPKWSDFPEEGDMWAHDLGGFSPGKPRRGGESTATEERRHLLTLWTQEGKGSLSGEVSEFGDQDVGLSTPSAAPCLPACHRVLP", "length": 156, "header": "tr|A0A9J7KC82-1|A0A9J7HC06_CRIGR Computationally mapped isoform of Uncharacterized protein LOC118238834 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC118238834 PE=4 SV=1 CANONICAL=A0A9J7HC06-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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8307.0, "monoisotopic_mass": 8307.0 }, "refseq": { "ac": "XP_035309445", "name": "zinc finger protein 431-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309445" }, "gene_names": [ { "name": "LOC113838920", "type": "recommended", "evidence": [ { "id": "A0A9J7HC41", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HC41" } ] }, { "name": "LOC113838920", "type": "synonym", "evidence": [ { "id": "XP_035309445", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309445" } ] } ], "protein_names": [ { "name": "Zinc finger protein 431-like", "type": "synonym", "evidence": [ { "id": "A0A9J7HC41", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HC41/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 431-like", "type": "synonym", "evidence": [ { "id": "XP_035309445", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309445" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 7% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276808.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035309445", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309445" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HC41", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HC41" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113838920", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HC41", "locus": {} } ], "crossref": [ { "id": "A0A9J7HC41", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HC41", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein 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"function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035307589", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307589" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HC88", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HC88" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Erich6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HC88", "locus": {} } ], "crossref": [ { "id": "A0A9J7HC88", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HC88", "database": "AlphaFoldDB", "categories": [] }, { "id": "100772843", "url": "https://www.ncbi.nlm.nih.gov/gene/100772843", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029281", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029281", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100772843", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772843", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HC88", "url": "https://www.orthodb.org/?gene=A0A9J7HC88", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23093", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23093", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23093:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23093:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14977", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14977", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035307589", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307589", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HC88", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HC88", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HC88-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HC88-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MYPSLYETVQIQTEESWLQQISAIKEPRKITFPETKEERPESPASKLRGKWVINPEEPKLSILCEMEFNDEFVRLFEEPLRTLPSVGPPPILSYRKDLSYLDRNLKDEEESILMCEFCGSELQSFLSDVDIFSDNTHPELKKHAYCCPELKNLLDYINEERNNIKSTKTDLISINPHAAHGSEVDRLKAKEKAMQRKQERQMARHFAIVSSEPSPPIPEDDSKHTKTISYQLSLDIPDVKIEEETSETEISNVSIICCDSRKLCGKVVGDELLEKHYKHGSKFLTSFPDGTTQIFYPSGNLAIIQVPSKTNGFTCIVQEDTPTDPAILALLDSSGRSSCYHPNGNVWVYINILGGQYSDQAGNRIRTWNWSSSMPSSPFVSFKPVFLALNHHIGIRILEQDKISINFLAMGQQARISVGTKITLHDPEEIPALRFLTGDDLLLLASLIKIRRLFYKLEGCMNFPSSQAWEKRKQPSYLSSLSLKLLALCQNSGIKNSMMASITKLIKEK", "length": 509, "header": "tr|A0A9J7HC88-1|A0A9J7HC88_CRIGR Isoform 1 of Glutamate-rich protein 6 OS=Cricetulus griseus OX=10029 GN=Erich6 PE=4 SV=1 CANONICAL=A0A9J7HC88-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HC88-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HC88/entry#A0A9J7HC88-1", "sequence": { "sequence": "MYPSLYETVQIQTEESWLQQISAIKEPRKITFPETKEERPESPASKLRGKWVINPEEPKLSILCEMEFNDEFVRLFEEPLRTLPSVGPPPILSYRKDLSYLDRNLKDEEESILMCEFCGSELQSFLSDVDIFSDNTHPELKKHAYCCPELKNLLDYINEERNNIKSTKTDLISINPHAAHGSEVDRLKAKEKAMQRKQERQMARHFAIVSSEPSPPIPEDDSKHTKTISYQLSLDIPDVKIEEETSETEISNVSIICCDSRKLCGKVVGDELLEKHYKHGSKFLTSFPDGTTQIFYPSGNLAIIQVPSKTNGFTCIVQEDTPTDPAILALLDSSGRSSCYHPNGNVWVYINILGGQYSDQAGNRIRTWNWSSSMPSSPFVSFKPVFLALNHHIGIRILEQDKISINFLAMGQQARISVGTKITLHDPEEIPALRFLTGDDLLLLASLIKIRRLFYKLEGCMNFPSSQAWEKRKQPSYLSSLSLKLLALCQNSGIKNSMMASITKLIKEK", "length": 509, "header": "tr|A0A9J7HC88-1|A0A9J7HC88_CRIGR Isoform 1 of Glutamate-rich protein 6 OS=Cricetulus griseus OX=10029 GN=Erich6 PE=4 SV=1 CANONICAL=A0A9J7HC88-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is predicted by automated computational analysis. 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This record is derived from a genomic sequence (NW_023276808.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035309415", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309415" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCC1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCC1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC118237734", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCC1", "locus": {} } ], "crossref": [ { "id": "A0A9J7HCC1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HCC1", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd23807", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd23807", "database": "CDD", "categories": [ "Protein 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"https://www.uniprot.org/uniprotkb/A0A9J7HCC2/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 2 indels internal stop codons :: corrected 1 genomic stop codons ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276905.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035309630", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309630" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCC2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCC2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100752086", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCC2", "locus": {} } ], "crossref": [ { "id": "100752086", "url": "https://www.ncbi.nlm.nih.gov/gene/100752086", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006757", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006757", "database": "InterPro", "categories": [ "Protein 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"MDDPDNDSTWEDESKEGCEDGQADDKGHEDKGSKHSNAKEPRPGVFQSRKTRYRNWRAMQDMRRYRHHYPDLADQDCNSDMSNLHFYKNEICFQPNGLFIEEILHNWKDNYVVLEENHSYIQWLFPLREPGVNQHAKPLTLKEVEAFKSSQEVKERLVRAYELMLGFYGIQLEDRDTGAVCRAQNFQPRFQNLNSHRHNNLRITRILKSLGELGLEHYQAPLVRFFLEETLVQHQLPSVRQSVLDYFMFAVRCRHQRRELVYFAWEHFRPRCQFAWGHHDKLQRFRPHGTPRPLMVLGQADKDEGSGKPFQEAGTQGQTYGSGRDLSGSSGKAEDPSLLSTKPQESGALDEAQGDETESLSSKESKKRKXEEKRQEQVPGASDVEKTALNLEGCALSXFSQKPREANQACPVTHGARVADEERRQRKMEKRAEGDXVASNYHTDLQAYAPLPTTSESPLLPRLAWNFL", "length": 468, "header": "tr|A0A9J7HCC2-1|A0A9J7HCC2_CRIGR Isoform 1 of LOW QUALITY PROTEIN: opioid growth factor receptor-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100752086 PE=3 SV=1 CANONICAL=A0A9J7HCC2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HCC2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCC2/entry#A0A9J7HCC2-1", "sequence": { "sequence": "MDDPDNDSTWEDESKEGCEDGQADDKGHEDKGSKHSNAKEPRPGVFQSRKTRYRNWRAMQDMRRYRHHYPDLADQDCNSDMSNLHFYKNEICFQPNGLFIEEILHNWKDNYVVLEENHSYIQWLFPLREPGVNQHAKPLTLKEVEAFKSSQEVKERLVRAYELMLGFYGIQLEDRDTGAVCRAQNFQPRFQNLNSHRHNNLRITRILKSLGELGLEHYQAPLVRFFLEETLVQHQLPSVRQSVLDYFMFAVRCRHQRRELVYFAWEHFRPRCQFAWGHHDKLQRFRPHGTPRPLMVLGQADKDEGSGKPFQEAGTQGQTYGSGRDLSGSSGKAEDPSLLSTKPQESGALDEAQGDETESLSSKESKKRKXEEKRQEQVPGASDVEKTALNLEGCALSXFSQKPREANQACPVTHGARVADEERRQRKMEKRAEGDXVASNYHTDLQAYAPLPTTSESPLLPRLAWNFL", "length": 468, "header": "tr|A0A9J7HCC2-1|A0A9J7HCC2_CRIGR Isoform 1 of LOW QUALITY PROTEIN: opioid growth factor receptor-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100752086 PE=3 SV=1 CANONICAL=A0A9J7HCC2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KD38-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCC2/entry#A0A9J7KD38-1", "sequence": { "sequence": 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Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 3% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. 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This record is derived from a genomic sequence (NW_023276969.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: incomplete on the amino end.", "evidence": [ { "database": "RefSeq", "id": "XP_035309679", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309679" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCF3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCF3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC107978206", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCF3", "locus": {} } ], "crossref": [ { "id": "107978206", "url": "https://www.ncbi.nlm.nih.gov/gene/107978206", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ 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This record is derived from a genomic sequence (NW_023276808.1) annotated using gene prediction method: Gnomon. 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"start_pos": 75, "end_pos": 99, "start_aa": "Thr", "end_aa": "Pro", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7HCF9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCF9" }, { "id": "PS50805", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50805" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KRAB", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 72, "start_aa": "Met", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", 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{ "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "uniprot_canonical_ac": "A0A9J7HCG4-1", "uniprot_ac": "A0A9J7HCG4", "uniprot_id": "A0A9J7HCG4_CRIGR", "mass": { "chemical_mass": 44240.0, "monoisotopic_mass": 44240.0 }, 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"##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 2% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276919.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035309643", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309643" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCG4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCG4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113838537", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCG4", "locus": {} } ], "crossref": [ { "id": "A0A9J7HCG4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HCG4", "database": "AlphaFoldDB", "categories": [] }, { "id": "113838537", "url": "https://www.ncbi.nlm.nih.gov/gene/113838537", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003532", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003532", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013783", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013783", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015321", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015321", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036116", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036116", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040907", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040907", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113838537", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113838537", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HCG4", "url": "https://www.orthodb.org/?gene=A0A9J7HCG4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23037", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23037", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23037:SF46", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23037:SF46", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF09240", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09240", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF18611", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18611", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035309643", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309643", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HCG4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCG4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HCG4-1", "url": 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##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276964.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035309677", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309677" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCI4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCI4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC118239804", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCI4", "locus": {} } ], "crossref": [ { "id": "A0A9J7HCI4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HCI4", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd06365", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06365", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "118239804", "url": "https://www.ncbi.nlm.nih.gov/gene/118239804", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000068", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000068", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000337", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000337", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001828", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001828", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004073", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004073", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028082", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028082", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:118239804", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118239804", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HCI4", "url": "https://www.orthodb.org/?gene=A0A9J7HCI4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24061", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24061", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24061:SF403", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24061:SF403", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01094", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01094", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035309677", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309677", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HCI4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCI4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HCI4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCI4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLILIFLLLLLNIPLLMARFIHPRCFWKMKQNKDKTEELKTGCIFLPSIVERPVEKQYFKDILNIQIPAENYKYALALAYTMDEVNRNPDLLPNRSLVFDFSESNCITVTRLYHLDRHMEENYGYFHNYSCQKDISCVVVFTGPNWETSVITESFVQLIMSQQVIQFTYGPFHQILSDRERFPYLYQMAPKDTSLAFAMVSVILHFSWNWVGLAISDNDQGTQFLSNLRSELGKSTVCFAFVNIIPINIRLYVSRAQVYYKQIETSSTNVVIIYGDPDSTLAVSFQMWQSRGLQRLWVIDSQWDMITSKRDFMLDSSHMTLSFAHHHGEISGFKNFVQTMNPLKYTDEYLARLEWMNFNCEVSTSNCKTLRNYSSNVSVDWLVIRTFDMAFNDNLYDIYNAVYALAHALNEMVIQQVDTQPMDNGKGYHSPCWKLNSLLKRTHFTNPVGDRVNLNQKEKSQKEYDIFQIWNFQHGLRFKVNLGKYSPYFPHGQQLHIYEDMIEFATGNRQVGLTKLY", "length": 517, "header": "tr|A0A9J7HCI4-1|A0A9J7HCI4_CRIGR Isoform 1 of Vomeronasal type-2 receptor 116-like OS=Cricetulus griseus OX=10029 GN=LOC118239804 PE=4 SV=1 CANONICAL=A0A9J7HCI4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HCI4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCI4/entry#A0A9J7HCI4-1", "sequence": { "sequence": "MLILIFLLLLLNIPLLMARFIHPRCFWKMKQNKDKTEELKTGCIFLPSIVERPVEKQYFKDILNIQIPAENYKYALALAYTMDEVNRNPDLLPNRSLVFDFSESNCITVTRLYHLDRHMEENYGYFHNYSCQKDISCVVVFTGPNWETSVITESFVQLIMSQQVIQFTYGPFHQILSDRERFPYLYQMAPKDTSLAFAMVSVILHFSWNWVGLAISDNDQGTQFLSNLRSELGKSTVCFAFVNIIPINIRLYVSRAQVYYKQIETSSTNVVIIYGDPDSTLAVSFQMWQSRGLQRLWVIDSQWDMITSKRDFMLDSSHMTLSFAHHHGEISGFKNFVQTMNPLKYTDEYLARLEWMNFNCEVSTSNCKTLRNYSSNVSVDWLVIRTFDMAFNDNLYDIYNAVYALAHALNEMVIQQVDTQPMDNGKGYHSPCWKLNSLLKRTHFTNPVGDRVNLNQKEKSQKEYDIFQIWNFQHGLRFKVNLGKYSPYFPHGQQLHIYEDMIEFATGNRQVGLTKLY", "length": 517, "header": "tr|A0A9J7HCI4-1|A0A9J7HCI4_CRIGR Isoform 1 of Vomeronasal type-2 receptor 116-like OS=Cricetulus griseus OX=10029 GN=LOC118239804 PE=4 SV=1 CANONICAL=A0A9J7HCI4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [], "pathway": [ { "id": "cge:118239804", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118239804", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCI4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCI4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCI4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCI4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 128, "end_pos": 130, "annotation": "n_glycosylation_sequon" }, { "start_pos": 372, "end_pos": 374, "annotation": "n_glycosylation_sequon" }, { "start_pos": 376, "end_pos": 378, "annotation": "n_glycosylation_sequon" }, { "start_pos": 94, "end_pos": 96, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7HCI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCI4" }, { "id": "PF01094", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01094" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Receptor ligand binding region", "eco_id": "ECO_0000259", "start_pos": 76, "end_pos": 468, "start_aa": "Leu", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 128, "end_pos": 130 }, { "start_pos": 372, "end_pos": 374 }, { "start_pos": 376, "end_pos": 378 }, { "start_pos": 94, "end_pos": 96 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "uniprot_canonical_ac": "A0A9J7HCX4-1", "uniprot_ac": "A0A9J7HCX4", "uniprot_id": "A0A9J7HCX4_CRIGR", "mass": { "chemical_mass": 59253.0, "monoisotopic_mass": 59253.0 }, "refseq": { "ac": "XP_035309781", "name": "LOW QUALITY PROTEIN: GRB2-associated-binding protein 2-like isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309781" }, "gene_names": [ { "name": "LOC100759586", "type": "recommended", "evidence": [ { "id": "A0A9J7HCX4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCX4" } ] }, { "name": "LOC100759586", "type": "synonym", "evidence": [ { "id": "XP_035309781", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309781" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: GRB2-associated-binding protein 2-like isoform X3", "type": "synonym", "evidence": [ { "id": "XP_035309781", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309781" }, { "id": "A0A9J7HCX4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCX4/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 5% of CDS bases frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023277327.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035309781", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309781" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCX4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCX4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100759586", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCX4", "locus": {} } ], "crossref": [ { "id": "100759586", "url": "https://www.ncbi.nlm.nih.gov/gene/100759586", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001849", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046355", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046355", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100759586", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759586", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HCI5", "url": "https://www.orthodb.org/?gene=A0A9J7HCI5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7HCX4", "url": "https://www.orthodb.org/?gene=A0A9J7HCX4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45960", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45960", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45960:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45960:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00169", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00169", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035309781", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309781", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HCI5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCI5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HCI5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCI5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HCX4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCX4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HCX4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCX4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSGDPDVLEYYKNEHSKKPLRIINLNFCMQLDVALTFNKKEPQRSFLFDIITNERTFQLVTDTEADMNRWVQSICQICGFSQTKESTDTLRNLSSVNHSLCSSPAEFSSSSQHLLQTRKSSALSHSSQPTVSSHIQPALSTSTPPEYQHSHQCISQRTENARSATFSQSTRQESDTATQNLAQGNRHCISRISGKVHGVYSLPNPSRQFKDHAFGIPHSHPMESLTVSEGDNEDVYTFKVTSRNLCQVFGDLLVDSAIAPAPQHPKMPWCGNPLQRPPVNDYKYPRRGVETACWSAKSPKRTIMGRSDSDNSNYNCVPINPGSSTLQALEQTGDNSHSAYIPMNTVPHHFDTLGHPSTALPIHNVSGQEREIQPPPVNRHLKPGRKAKPPPLDLRNNTVINELPFKSPVTKSWSSQDCHSISTNNITNTDSRDSEEYYVLMQNPMSSSPVPSGTNNPALXKSTGNENYITLDFQAVSLSPHCKPSTSSVTSDEIVKYVQIDKKKTQALQKTIQKWTKIQQSSRPSIDAKLW", "length": 531, "header": "tr|A0A9J7HCX4-1|A0A9J7HCX4_CRIGR Isoform 1 of LOW QUALITY PROTEIN: GRB2-associated-binding protein 2-like isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100759586 PE=3 SV=1 CANONICAL=A0A9J7HCX4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HCI5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCX4/entry#A0A9J7HCI5-1", "sequence": { "sequence": "MSGDPDVLEYYKNEHSKKPLQIINLNFCMQLDVGLTFNKKEPQRSFVFDIITNEGTFYLVTETEADINRWVQSICQICGFSQTKESTDALRKLFSVNHSLCSSPAEFSSSSQHLLQTKRSSALSHSSQPTVSSHIHPALSTSTPQEYQHSHQCISQRTENARFANFSQITRHKSDIATQKLAQGNRHCISGVSGQVHGFYSLPKPSRQFKDHAFGLHRSHAMESLTVSEADNEDVYTFKVPSNTLCGEFGDLLVESAIPPPPWHPRTPQWGRPQQRPPVNDYKYPAQGTETICLATKSPKRTIMGQSDSGSSDDNGVPMNPDSSTLLSMEQTGDNSQSTYIPMNTVPRDFVTQGYPSTALPIHNVSGQEREIQPPPVNRNLKPGRKSKPPPLDLRNNTVINELPFKSPVTKSWSSQDCHSTSTKNITNTDFRDSEEYYVPMQNPMSSSPVPSGTNYPALXKSSGNENHIALDFYPVSLSPHCRPSPSSVTSDEKVKYVQIDKXETQALQKTIQKWTKIQQSSRPSKDA", "length": 528, "header": "tr|A0A9J7HCI5-1|A0A9J7HCX4_CRIGR Computationally mapped isoform of LOW QUALITY PROTEIN: GRB2-associated-binding protein 2-like isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100759586 PE=3 SV=1 CANONICAL=A0A9J7HCX4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HCX4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCX4/entry#A0A9J7HCX4-1", "sequence": { "sequence": 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035293485", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035293485" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCK2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCK2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100762978", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCK2", "locus": {} } ], "crossref": [ { "id": "A0A9J7HCK2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HCK2", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd01851", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01851", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd16269", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16269", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100762978", "url": "https://www.ncbi.nlm.nih.gov/gene/100762978", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003191", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003191", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015894", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015894", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR030386", "url": "https://www.ebi.ac.uk/interpro/entry/IPR030386", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036543", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036543", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037684", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037684", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100762978", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762978", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HCK2", "url": "https://www.orthodb.org/?gene=A0A9J7HCK2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10751", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10751", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02263", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02263", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02841", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02841", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035293485", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035293485", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HCK2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCK2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HCK2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCK2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNMASKVPVCLIENVKGQLIPNQKALEILSEITQPVVVVAIVGLYRTGKSYLMNKLAGKKTGFSLGSTIQSHTNGIWMWCIPHPQKPDNTLILLDTEGLGDVEKGDNQNDCWIFALAILLSSTFVYNSMGPINQQAMDQLHYVTELTDQIRARASTDQEDEVEDSSEFVRFFPDFVWVLRDVTLRLEADGQSLTADEYLENSLKLKQGTSEVEKNYNLPRLCIRKFFPKKKCFVFYPPTEWKKLSELENLHDDALDSDFVQQVAEFCSFIFGSSKAKALPGGIKVNGAQLGILAHTYLDAIKSGTVPCLENAVNTLAERENSIALQKATDHYSEQMDQQVRLPTDTLQELLDIHAVCEKKAIAVFMDRSFKDDQRKFQEKLVATIEERKEDFIQQNEAASLSYCQAELEKLSEPLRESISRGDFSVPGGHSLYLEARKKVEQGYEHVPRKGVKASEVFRDFLKSLITTEDCILQSDKALTDGQKAMAAEQSKKEAAEKELELMRQHQMEQEEAREAHMRTISENMVQLQRKMEMERDNLLEEQERMLDHKLKEIEKLFQEGAGKEVNHLKVEINLLLGQTDAIKQNSFDGILSMLREILVNVSTSQINRFLKYW", "length": 614, "header": "tr|A0A9J7HCK2-1|A0A9J7HCK2_CRIGR Isoform 1 of Guanylate-binding protein 4-like OS=Cricetulus griseus OX=10029 GN=LOC100762978 PE=3 SV=1 CANONICAL=A0A9J7HCK2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HCK2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCK2/entry#A0A9J7HCK2-1", "sequence": { "sequence": "MNMASKVPVCLIENVKGQLIPNQKALEILSEITQPVVVVAIVGLYRTGKSYLMNKLAGKKTGFSLGSTIQSHTNGIWMWCIPHPQKPDNTLILLDTEGLGDVEKGDNQNDCWIFALAILLSSTFVYNSMGPINQQAMDQLHYVTELTDQIRARASTDQEDEVEDSSEFVRFFPDFVWVLRDVTLRLEADGQSLTADEYLENSLKLKQGTSEVEKNYNLPRLCIRKFFPKKKCFVFYPPTEWKKLSELENLHDDALDSDFVQQVAEFCSFIFGSSKAKALPGGIKVNGAQLGILAHTYLDAIKSGTVPCLENAVNTLAERENSIALQKATDHYSEQMDQQVRLPTDTLQELLDIHAVCEKKAIAVFMDRSFKDDQRKFQEKLVATIEERKEDFIQQNEAASLSYCQAELEKLSEPLRESISRGDFSVPGGHSLYLEARKKVEQGYEHVPRKGVKASEVFRDFLKSLITTEDCILQSDKALTDGQKAMAAEQSKKEAAEKELELMRQHQMEQEEAREAHMRTISENMVQLQRKMEMERDNLLEEQERMLDHKLKEIEKLFQEGAGKEVNHLKVEINLLLGQTDAIKQNSFDGILSMLREILVNVSTSQINRFLKYW", "length": 614, "header": "tr|A0A9J7HCK2-1|A0A9J7HCK2_CRIGR Isoform 1 of Guanylate-binding protein 4-like OS=Cricetulus griseus OX=10029 GN=LOC100762978 PE=3 SV=1 CANONICAL=A0A9J7HCK2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCK2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCK2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCK2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCK2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100762978", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762978", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "GTPase activity", "id": "GO:0003924", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003924", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCK2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCK2" } ], "pmid": "" }, { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCK2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCK2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "cellular response to type II interferon", "id": "GO:0071346", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071346", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCK2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCK2" } ], "pmid": "" }, { "name": "regulation of defense response", "id": "GO:0031347", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031347", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCK2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCK2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 601, "end_pos": 603, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7HCK2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCK2" }, { "id": "PS51715", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51715" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "GB1/RHD3-type G", "eco_id": "ECO_0000259", "start_pos": 33, "end_pos": 275, "start_aa": "Thr", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 601, "end_pos": 603 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7HCK6-1", "uniprot_ac": "A0A9J7HCK6", "uniprot_id": "A0A9J7HCK6_CRIGR", "mass": { "chemical_mass": 35009.0, "monoisotopic_mass": 35009.0 }, "refseq": { "ac": "XP_035309556", "name": "zinc finger protein 120-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309556" }, "gene_names": [ { "name": "LOC118239775", "type": "recommended", "evidence": [ { "id": "A0A9J7HCK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCK6" } ] }, { "name": "LOC118239775", "type": "synonym", "evidence": [ { "id": "XP_035309556", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309556" } ] } ], "protein_names": [ { "name": "Zinc finger protein 120-like", "type": "synonym", "evidence": [ { "id": "A0A9J7HCK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCK6/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 120-like", "type": "synonym", "evidence": [ { "id": "XP_035309556", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309556" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276808.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: incomplete on the carboxy end.", "evidence": [ { "database": "RefSeq", "id": "XP_035309556", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309556" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCK6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCK6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC118239775", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCK6", "locus": {} } ], "crossref": [ { "id": "A0A9J7HCK6", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HCK6", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "118239775", "url": "https://www.ncbi.nlm.nih.gov/gene/118239775", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050758", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050758", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:118239775", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118239775", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HCK6", "url": "https://www.orthodb.org/?gene=A0A9J7HCK6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23234", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23234", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23234:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23234:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13465", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13465", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035309556", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309556", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HCK6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCK6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HCK6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCK6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDLLQYDDLHIYFTWEEWTLLDTSQKNLYKDMMLETYKNLSDIGYIWGDHTIEEHSFTHYSHLQMHTRTHTGEKPFECNQCGKAFTYHSDLQRHKRTHTGEKHYECNQCGKASTDHSDLQRHKRTRTGEKPYECNQCGKAFARNSNLQRHKRIHTGEKPYECNQCGKAFTHYSHLQMHTRTHTGEKPYECNQCGKVFTNHRALHVHKRSHTGEKLYECNQCGKAFAQPSYLKIHKITHTGEKPYECNHCGKGFADPSALHVHKSTHTGEKPYECNHCGKAFARKSHLQRHKRTHTGKK", "length": 298, "header": "tr|A0A9J7HCK6-1|A0A9J7HCK6_CRIGR Isoform 1 of Zinc finger protein 120-like OS=Cricetulus griseus OX=10029 GN=LOC118239775 PE=3 SV=1 CANONICAL=A0A9J7HCK6-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HCK6-1", 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Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 722 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023277241.1) and transcript sequence (IACG01049109.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035309762", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309762" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCK8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCK8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113839063", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCK8", "locus": {} } ], "crossref": [ { "id": "A0A9J7HCK8", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HCK8", "database": "AlphaFoldDB", "categories": [] }, { "id": "113839063", "url": "https://www.ncbi.nlm.nih.gov/gene/113839063", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": 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:: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 46% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023277086.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035309725", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309725" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCL5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCL5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113839116", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCL5", "locus": {} } ], "crossref": [ { "id": "A0A9J7HCL5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HCL5", "database": "AlphaFoldDB", "categories": [] }, { "id": "113839116", "url": "https://www.ncbi.nlm.nih.gov/gene/113839116", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "uniprot_canonical_ac": "A0A9J7HCL6-1", "uniprot_ac": "A0A9J7HCL6", "uniprot_id": "A0A9J7HCL6_CRIGR", "mass": { "chemical_mass": 37417.0, "monoisotopic_mass": 37417.0 }, "refseq": { "ac": "XP_035309782", "name": "GRB2-associated-binding protein 2-like isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309782" }, "gene_names": [ { "name": "LOC113831623", "type": "recommended", "evidence": [ { "id": "A0A9J7HCL6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCL6" } ] }, { "name": "LOC113831623", "type": "synonym", "evidence": [ { "id": "XP_035309782", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309782" } ] } ], "protein_names": [ { "name": "GRB2-associated-binding protein 2-like isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035309782", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309782" }, { "id": "A0A9J7HCL6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCL6/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 42% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023277333.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035309782", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309782" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCL6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCL6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113831623", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCL6", "locus": {} } ], "crossref": [ { "id": "A0A9J7HCL6", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HCL6", "database": "AlphaFoldDB", "categories": [] }, { "id": "113831623", "url": "https://www.ncbi.nlm.nih.gov/gene/113831623", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR046355", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046355", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113831623", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113831623", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HCL6", "url": "https://www.orthodb.org/?gene=A0A9J7HCL6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45960", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45960", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45960:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45960:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_035309782", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309782", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HCL6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCL6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HCL6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCL6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVQSDNARFSQSNVQESDTAAQKLAQGNRHSIHRVSSQVHDFYRLPKPSQYSGFDHPCSLASPSHTKPGFSVSASDSEDMYTFKEPRNTPCSEFGDLPVDSAIAPPPLPPKTPRGSSPQQRPPDSDYKYPTRDGETACCRDKSPKKTIVGLPNNASSDDNYVSINPGSDIPMSTMPLHIASRGSEIQPPPVYRHLKPGRKAKPEPLDLRNNTVINELPFKSPVTKPWSTVNNTFNRSSSQYCRSISITDSGDCEENYVPMQNPMSSSPAPSGTNNPVPKKSTGNVNYIDPDFQPPSPSPQHKPSTSSIISDEKGEYVQIDEEKNQALQKSIQESTKMRQS", "length": 340, "header": "tr|A0A9J7HCL6-1|A0A9J7HCL6_CRIGR Isoform 1 of GRB2-associated-binding protein 2-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC113831623 PE=4 SV=1 CANONICAL=A0A9J7HCL6-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HCL6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCL6/entry#A0A9J7HCL6-1", "sequence": { "sequence": 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annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276808.1) annotated using gene prediction method: Gnomon. 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035309831", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309831" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCQ1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCQ1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100769951", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCQ1", "locus": {} } ], "crossref": [ { "id": "A0A9J7HCQ1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HCQ1", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd23807", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd23807", "database": "CDD", "categories": [ "Protein 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"protein_names": [ { "name": "Uncharacterized protein C18orf63-like", "type": "synonym", "evidence": [ { "id": "A0A9J7HCR4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCR4/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein C18orf63-like", "type": "synonym", "evidence": [ { "id": "XP_035309813", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309813" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 5% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023277415.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035309813", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309813" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCR4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCR4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC118239829", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCR4", "locus": {} } ], "crossref": [ { "id": "A0A9J7HCR4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HCR4", "database": "AlphaFoldDB", "categories": [] }, { "id": "118239829", "url": "https://www.ncbi.nlm.nih.gov/gene/118239829", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR031643", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031643", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:118239829", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118239829", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HCR4", "url": "https://www.orthodb.org/?gene=A0A9J7HCR4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR28495", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28495", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR28495:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28495:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_035309813", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309813", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HCR4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCR4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HCR4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCR4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAAAVCRPSASGLENKVKAPNLTTKKHFRASLTQATLLNPTGPLCLVPQPTAANHKVEPFVSQQCSGLFSAGCFQPGSPRDRKPSWPLKAPQLLVGESKLSRENTQVQRSHPCSQSQRAPAFIPVFRRKSEQANKDISALRNMGRKQSTVTEPTLLTQKTRVTQGGKPSLGSATRKRPDSNIQVQARNLNRKSFKPPLGRITDTYERQKEHLSSDVKLTVHLSESRPLPTTAMTQMSSNNVSSIRNAVDSHTNGKDNLTSSFITQILGKSHESLKLKSQPHIFESDLGTEDSQVHQQQLANLTREADGAEHGLISSKASQKNRRKLCLESSKSSTKHRSNAVNLRQPGSSKKQVKI", "length": 357, "header": "tr|A0A9J7HCR4-1|A0A9J7HCR4_CRIGR Isoform 1 of Uncharacterized protein C18orf63-like OS=Cricetulus griseus OX=10029 GN=LOC118239829 PE=4 SV=1 CANONICAL=A0A9J7HCR4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HCR4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCR4/entry#A0A9J7HCR4-1", "sequence": { "sequence": 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"evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [], "pathway": [ { "id": "cge:118239829", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118239829", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 22, "end_pos": 24, "annotation": "n_glycosylation_sequon" }, { "start_pos": 241, "end_pos": 243, "annotation": "n_glycosylation_sequon" }, { "start_pos": 258, "end_pos": 260, "annotation": "n_glycosylation_sequon" }, { "start_pos": 302, "end_pos": 304, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], 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"site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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"uniprot_ac": "A0A9J7HCR7", "uniprot_id": "A0A9J7HCR7_CRIGR", "mass": { "chemical_mass": 27777.0, "monoisotopic_mass": 27777.0 }, "refseq": { "ac": "XP_035309678", "name": "rap guanine nucleotide exchange factor 2-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309678" }, "gene_names": [ { "name": "LOC118237673", "type": "recommended", "evidence": [ { "id": "A0A9J7HCR7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCR7" } ] }, { "name": "LOC118237673", "type": "synonym", "evidence": [ { "id": "XP_035309678", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309678" } ] } ], "protein_names": [ { "name": "Rap guanine nucleotide exchange factor 2-like", "type": "synonym", "evidence": [ { "id": "A0A9J7HCR7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCR7/entry#names_and_taxonomy" } ] }, { "name": "rap guanine nucleotide exchange factor 2-like", "type": "synonym", "evidence": [ { "id": "XP_035309678", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309678" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276966.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: incomplete on the carboxy end.", "evidence": [ { "database": "RefSeq", "id": "XP_035309678", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309678" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCR7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCR7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC118237673", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCR7", "locus": {} } ], "crossref": [ { "id": "A0A9J7HCR7", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HCR7", "database": "AlphaFoldDB", "categories": [] }, { "id": "118237673", "url": "https://www.ncbi.nlm.nih.gov/gene/118237673", "database": "GeneID", "categories": [ "Genome Annotation" ] 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125076.0, "monoisotopic_mass": 125076.0 }, "refseq": { "ac": "XP_035307884", "name": "LOW QUALITY PROTEIN: uncharacterized protein C6orf132 homolog isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307884" }, "gene_names": [ { "name": "CUNH6orf132", "type": "recommended", "evidence": [ { "id": "A0A9J7HCR8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCR8" } ] }, { "name": "CUNH6orf132", "type": "synonym", "evidence": [ { "id": "XP_035307884", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307884" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: uncharacterized protein C6orf132 homolog isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035307884", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307884" }, { "id": "A0A9J7HCR8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCR8/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035307884", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307884" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCR8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCR8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "CUNH6orf132", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCR8", "locus": {} } ], "crossref": [ { "id": "100772166", "url": "https://www.ncbi.nlm.nih.gov/gene/100772166", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:100772166", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772166", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HCR8", "url": "https://www.orthodb.org/?gene=A0A9J7HCR8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR35077", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35077", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR35077:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35077:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_035307884", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307884", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HCR8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCR8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HCR8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCR8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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"length": 1180, "header": "tr|A0A9J7HCR8-1|A0A9J7HCR8_CRIGR Isoform 1 of LOW QUALITY PROTEIN: uncharacterized protein C6orf132 homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=CUNH6orf132 PE=4 SV=1 CANONICAL=A0A9J7HCR8-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 191, "start_aa": "Thr", "end_pos": 191, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr191", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 207, "start_aa": "Thr", "end_pos": 207, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr207", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 288, "start_aa": "Thr", "end_pos": 288, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr288", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 305, "start_aa": "Thr", "end_pos": 305, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr305", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 641, "start_aa": "Thr", "end_pos": 641, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr641", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 96, "start_aa": "Thr", "end_pos": 96, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr96", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"LOC118239811", "type": "recommended", "evidence": [ { "id": "A0A9J7HCS6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCS6" } ] }, { "name": "LOC118238592", "type": "synonym", "evidence": [ { "id": "XP_035298506", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035298506" }, { "id": "A0A9J7HCS6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCS6" } ] } ], "protein_names": [ { "name": "Endogenous retrovirus group K member 19 Env polyprotein-like", "type": "synonym", "evidence": [ { "id": "A0A9J7HCS6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCS6/entry#names_and_taxonomy" } ] }, { "name": "endogenous retrovirus group K member 19 Env polyprotein-like", "type": "synonym", "evidence": [ { "id": "XP_035298506", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035298506" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035298506", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035298506" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCS6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCS6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC118239811", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCS6", "locus": {} } ], "crossref": [ { "id": "118239811", "url": "https://www.ncbi.nlm.nih.gov/gene/118239811", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:118238592", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118238592", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "cge:118239811", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118239811", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HCS6", "url": "https://www.orthodb.org/?gene=A0A9J7HCS6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "XP_035298506", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035298506", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HCS6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCS6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HCS6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCS6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKIKHLMKEAKTLLKQQGKPLTASMNFLAILALISTPPSVEGVAYWAYIPNPPILQPVGWLDQEPIRVLTNDTVRMGGARDSDARASSSSLITFEGRADSLPICITLQGKVPEGCLSTGYRTFLTDGPDKESAALWPKCSKKSLSCNLKIKNGELLRPRRSRLCSRRCH", "length": 169, "header": "tr|A0A9J7HCS6-1|A0A9J7HCS6_CRIGR Isoform 1 of Endogenous retrovirus group K member 19 Env polyprotein-like OS=Cricetulus griseus OX=10029 GN=LOC118239811 PE=4 SV=1 CANONICAL=A0A9J7HCS6-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HCS6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCS6/entry#A0A9J7HCS6-1", "sequence": { "sequence": "MKIKHLMKEAKTLLKQQGKPLTASMNFLAILALISTPPSVEGVAYWAYIPNPPILQPVGWLDQEPIRVLTNDTVRMGGARDSDARASSSSLITFEGRADSLPICITLQGKVPEGCLSTGYRTFLTDGPDKESAALWPKCSKKSLSCNLKIKNGELLRPRRSRLCSRRCH", "length": 169, "header": "tr|A0A9J7HCS6-1|A0A9J7HCS6_CRIGR Isoform 1 of Endogenous retrovirus group K member 19 Env polyprotein-like OS=Cricetulus griseus OX=10029 GN=LOC118239811 PE=4 SV=1 CANONICAL=A0A9J7HCS6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"UniProtKB", "id": "A0A9J7HCV9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCV9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7HCV9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCV9" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 12, "end_pos": 39, "start_aa": "Tyr", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], 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"table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "uniprot_canonical_ac": "A0A9J7HCX3-1", "uniprot_ac": "A0A9J7HCX3", "uniprot_id": "A0A9J7HCX3_CRIGR", "mass": { "chemical_mass": 259605.0, "monoisotopic_mass": 259605.0 }, "refseq": { "ac": "XP_035307203", "name": "sperm-associated antigen 17", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307203" }, "gene_names": [ { "name": "Spag17", "type": "recommended", "evidence": [ { "id": "A0A9J7HCX3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCX3" } ] }, { "name": "Spag17", "type": "synonym", "evidence": [ { "id": "XP_035307203", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307203" } ] } ], "protein_names": [ { "name": "Sperm-associated antigen 17", "type": "synonym", "evidence": [ { "id": "A0A9J7HCX3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCX3/entry#names_and_taxonomy" } ] }, { "name": "sperm-associated antigen 17", "type": "synonym", "evidence": [ { "id": "XP_035307203", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307203" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035307203", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307203" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCX3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCX3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Spag17", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCX3", "locus": {} } ], "crossref": [ { "id": "100772829", "url": "https://www.ncbi.nlm.nih.gov/gene/100772829", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026173", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026173", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100772829", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772829", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HCX3", "url": "https://www.orthodb.org/?gene=A0A9J7HCX3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21963", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21963", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21963:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21963:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14874", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14874", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035307203", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307203", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HCX3", "url": 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"MAPKKEKVTPNTNSRIWEPSLISAQLNQNDWKASIAFVVGNRIEDFLLIEALGMAVQYPQRKLFSLVSWQDILQQIDEIQSLAAAVSSKKGKKPPNGGLPLYYEVLMAARVIMDSGEKLTLPLIGKLLKFQLLQIKLKDQQRQENEKKMVEDRAKSEKDKGKVKSPKEKKSGSAKAGKGKGKDQPEAAAAVKKSTQLKRRGDDDDIKAYIDDEPDDGAQHYIIVVGFNNPQLLAIMTELGISIASVIKISSENYEPLQTYLEAVRQQQEAILQPEEIEAEELKTQRSIKELENFWKYLEPILNNEKPETNLFDVARLHYTVNMAYFPSDWSDHEMMLDLGTEIFENVACLMYDSLDWKRQHQHYLESMHLINVPQVVSEKTMLEAMPIPEPPPPTAPAPGKKKPQYEEPQAPPTVAFIITTDVDMRYYNDLLNPIPEEFISVPLILHCMLEQVVATEEDLIPPSLVEPRPRADGLDFRIAAHIVSILPSLCLSEKEKKNLQEIFLAEGESESKALPKGPLLLNYHDAHSHKKYALKDQKNFDPVQIEQEMQSKLPLWEFLQFPLPPPWNSTKRLATIHELMHFCTNEVLSWNEVERAFKVFTFESLKLSEVDEAGQLKPAEVVSQADAENINIPWDNPARFAKHIRQQCMHRANIQKAKPVADIGNKDRILFINQNLSRSEAEEYPDPNEPDVNSVRPSTSDTRRPLDAGNRELSEKETSGSMWPQSESLEQTMDSEIKDEAATKDDSPEKKPKKIVVEANLEDIKKTQQRSLTDWSFTEHFQPKVLLQVLQEAHQQYRCVDSYYHTQDNSLLLVFHNPMNTQRLHCEYWNIALHSNVGFRNYLELIAKSIQDWITEEEAKYQEAKMAEELNRTKIELELKASTSKISSSKSVSLKKSKSNKIVSKTEMPEQEKEKEKEKIPFILEGSLKAWKEEQERLAEEERLKEEKKAEKKAEKKGKDAGKKKGKDKVENLIEETKILKKKSSSKEKAKEDPVKIPETIEESFPLPEPETVYPFRGYNMGDVPVKITGKNYYLYPSDGGQIEVEKTMFERGPTFIKVKVKKDKHNFIIHLKDPKEIVKKDKEEDYSSEEEEEEETTQVVNEAVSKFGSFSATLENGICLSISYYGANGMAPEVTDPELETIMNIPSALIATVIPTIVTVPQGKVKPKVKGKEKPKESLKEEEHPKEEEKKNYVPEEAEPEIVIQEPSYVPTFQNLNVSCPNGLLLTFIGQESTDHPIVDEEPTWDLMIRQSYPQRVKHYEFYKAVMPPMEQEASRVVTSQGTVIKYMLDGSTQVLFADGAVSSSPDSGPVYTSPDLSTSPHNGDLVDSASQPKSETAPSEIVITKKGKGHKNQTSVAHKNETHDTLPGVVPTVPTTIETHTGTWFTTTPDGNRIGTKGLEKIEHLKPYLSFQATDPINGTVMTTREDKVIIVEKKDGTRIVDHADGTRITTFYQVYEDHIIPPDGEETTEGPGTVTRQVKCMRIESSHYATIITNCEDSSCCATFGDGTSIIAKPQGSYQVLPPNTGCLYIDRDCSATYCHESSSNIYHPFQKREQLRASRYIMKHTSEVICEVLDPEGNTFQVMADGSVSTMLPKRKLEDDANVQTEGYDSLSSTHLEKNHMQIYGEHVPRFFVIYTDGSGMELLRDSDIEEYLSLAYGESTTVVLQEPVQEHPGALSITVLRPFHEASPWLMKKELNTIVPRNLQSRSWETFPSVEKKTPGPPFGTQIWKGLCIGSKQLTNAPAPILKGPRVLQMRQFIQHEVIKSEVKLRLQISLKDYINHILKKEDELQEMTVKDSRTEEERGNAADLLKLVMSFPKMEETTKSHVTEVAAHLTDLFKQSMDLTPKYSPDSFAKEFFEKKWRTTSSAKSWKEKLEKQREIIEKTQRYLIQIRNKEVTPYFNSELSPLFKTQYNYLKNLSKNLPPFPKKNETTTKPDVSDPDSDSTLTADVEQEAKNTPPLPKQEVAENMKKPASQSDAENVTKSIKRSPSQNTPENLVQYTQESDTQSKTETITKSPKESANQKCIIKLKKSTKKSTSQNQIENLKYTKESASQNQVENVTRPPTEEPDFFMPIKIPTQSLLQDVTGQARKEKVRLPHYLMSSKPKCQPLAKVEDCVGGKVNTSSIASAVIHNTNAAPFGFHLLPPSVKFGVLKEGQTYATTVKLKNVGVNFCRFRVKQPSPSTGLKVTYKPGPVAAGLHAELKIELFAMALEDDGTKGLAHISHNIEIMTEHDILFLPVEAIVLTSSNYDNRPKNFPQGKENPTVYKTSTISSSALGVFTSRKATRR", "length": 2295, "header": "tr|A0A9J7HCX3-1|A0A9J7HCX3_CRIGR Isoform 1 of Sperm-associated antigen 17 OS=Cricetulus griseus OX=10029 GN=Spag17 PE=4 SV=1 CANONICAL=A0A9J7HCX3-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1375, "start_aa": "Thr", "end_pos": 1375, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1375", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 395, "start_aa": "Thr", "end_pos": 395, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr395", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCX3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCX3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCX3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCX3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100772829", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772829", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "axonemal central apparatus assembly", "id": "GO:1904158", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1904158", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCX3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCX3" } ], "pmid": "" }, { "name": "epithelial cilium movement involved in extracellular fluid movement", "id": "GO:0003351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003351", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCX3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCX3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "axonemal central apparatus", "id": "GO:1990716", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990716", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCX3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCX3" } ], "pmid": "" }, { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCX3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCX3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1219, "end_pos": 1221, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1355, "end_pos": 1357, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1363, "end_pos": 1365, 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"enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 395, 1375 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1219, "end_pos": 1221 }, { "start_pos": 1355, "end_pos": 1357 }, { "start_pos": 1363, "end_pos": 1365 }, { "start_pos": 1421, "end_pos": 1423 }, { "start_pos": 1924, "end_pos": 1926 }, { "start_pos": 1936, "end_pos": 1938 }, { "start_pos": 1987, "end_pos": 1989 }, { "start_pos": 2066, "end_pos": 2068 }, { "start_pos": 2129, "end_pos": 2131 }, { "start_pos": 569, "end_pos": 571 }, { "start_pos": 676, "end_pos": 678 }, { "start_pos": 872, "end_pos": 874 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { 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"sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7HCX8-1", "uniprot_ac": "A0A9J7HCX8", "uniprot_id": "A0A9J7HCX8_CRIGR", "mass": { "chemical_mass": 42583.0, "monoisotopic_mass": 42583.0 }, "refseq": { "ac": "XP_035309325", "name": "LOW QUALITY PROTEIN: protein FAM47E isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309325" }, "gene_names": [ { "name": "LOC100760554", "type": "recommended", "evidence": [ { "id": "A0A9J7HCX8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCX8" } ] }, { "name": "LOC100760554", "type": "synonym", "evidence": [ { "id": "XP_035309325", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309325" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: protein FAM47E isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035309325", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309325" }, { "id": "A0A9J7HCX8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCX8/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. 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:: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 6% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035307222", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307222" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCZ0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCZ0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ttc24", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCZ0", "locus": {} } ], "crossref": [ { "id": "A0A9J7HCZ0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HCZ0", "database": "AlphaFoldDB", "categories": [] }, { "id": "100762621", "url": "https://www.ncbi.nlm.nih.gov/gene/100762621", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019734", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019734", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024812", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024812", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100762621", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762621", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HCZ0", "url": "https://www.orthodb.org/?gene=A0A9J7HCZ0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47050", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47050", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47050:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47050:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13176", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13176", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13424", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13424", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035307222", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307222", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HCZ0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCZ0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HCZ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCZ0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEEIAPRSSPVPRGSHLKLEPVPKPSNCKKKKEKRKWLQQEANIQTLTRAGLRALQAGQAQEALGSFQKAFLLASKVLSTRDSPVLRACAFNLGAAYVETGDPAIGLELLLRAHPEEKFEGWCHGDQCFNVALAYHALGELTQALDWYHRALGHYQSQGDHGEAQAKMGACYEALGWPKQAACSLQEASRAYARAGQLWDAALAQVAAVRCMLSSGQHGPSEVLQALEESRELADADCSTDRALLGPLYNDLGMGYFQLQLFPLAVEAFLQALPLCRQPAEQATVLQNLGMAYNVLGSYQEAQEFHQKAANLHGSVGQRLEQGRSFGGLAFSLSQMGDHRAAWDSYLHALQAAQDTGDMKGQWQACEGLGAAAARLGQHEKSLKYYKEALAQCQHEPGSVRERLVAKLADAMRTFLAQERLARAPILVT", "length": 429, "header": "tr|A0A9J7HCZ0-1|A0A9J7HCZ0_CRIGR Isoform 1 of Tetratricopeptide repeat protein 24 OS=Cricetulus griseus OX=10029 GN=Ttc24 PE=4 SV=1 CANONICAL=A0A9J7HCZ0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HCZ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCZ0/entry#A0A9J7HCZ0-1", "sequence": { "sequence": "MEEIAPRSSPVPRGSHLKLEPVPKPSNCKKKKEKRKWLQQEANIQTLTRAGLRALQAGQAQEALGSFQKAFLLASKVLSTRDSPVLRACAFNLGAAYVETGDPAIGLELLLRAHPEEKFEGWCHGDQCFNVALAYHALGELTQALDWYHRALGHYQSQGDHGEAQAKMGACYEALGWPKQAACSLQEASRAYARAGQLWDAALAQVAAVRCMLSSGQHGPSEVLQALEESRELADADCSTDRALLGPLYNDLGMGYFQLQLFPLAVEAFLQALPLCRQPAEQATVLQNLGMAYNVLGSYQEAQEFHQKAANLHGSVGQRLEQGRSFGGLAFSLSQMGDHRAAWDSYLHALQAAQDTGDMKGQWQACEGLGAAAARLGQHEKSLKYYKEALAQCQHEPGSVRERLVAKLADAMRTFLAQERLARAPILVT", "length": 429, "header": "tr|A0A9J7HCZ0-1|A0A9J7HCZ0_CRIGR Isoform 1 of Tetratricopeptide repeat protein 24 OS=Cricetulus griseus OX=10029 GN=Ttc24 PE=4 SV=1 CANONICAL=A0A9J7HCZ0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24377", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24377", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13912", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13912", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035309830", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309830", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HD01", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HD01", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HD01-1", "url": 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0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "uniprot_canonical_ac": "A0A9J7HD08-1", "uniprot_ac": "A0A9J7HD08", "uniprot_id": "A0A9J7HD08_CRIGR", "mass": { "chemical_mass": 124756.0, "monoisotopic_mass": 124756.0 }, "refseq": { "ac": "XP_035308042", "name": "exportin-7 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308042" }, "gene_names": [ { "name": "Xpo7", "type": "recommended", "evidence": [ { "id": "A0A9J7HD08", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HD08" } ] }, { "name": "Xpo7", "type": "synonym", "evidence": [ { "id": "XP_035308042", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308042" } ] } ], "protein_names": [ { "name": "Exportin-7 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7HD08", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HD08/entry#names_and_taxonomy" } ] }, { "name": "exportin-7 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035308042", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308042" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035308042", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308042" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HD08", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HD08" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Xpo7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HD08", "locus": {} } ], "crossref": [ { "id": "A0A9J7HD08", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HD08", "database": "AlphaFoldDB", "categories": [] }, { "id": "100750532", "url": "https://www.ncbi.nlm.nih.gov/gene/100750532", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001494", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001494", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044189", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044189", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057947", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057947", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100750532", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100750532", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HD08", "url": "https://www.orthodb.org/?gene=A0A9J7HD08", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12596", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12596", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12596:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12596:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03810", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03810", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25795", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25795", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035308042", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308042", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HD08", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HD08", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HD08-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HD08-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KEW1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KEW1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEW1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MADHVQSLAQLENLCKQLYETTDTTTRLQAEKALVEFTNSPDCLSKCQLLLERGSSSYSQLLAATCLTKLVSRTNNPLPLEQRIDIRNYVLNYLATRPKLATFVTQALIQLYARITKLGWFDCQKDDYVFRNAITDVTRFLQDSVEYCIIGVTILSQLTNEINQVSATAFLIEADTTHPLTKHRKIASSFRDSSLFDIFTLSCNLLKQASGKNLNLNDESQHGLLMQLLKLTHNCLNFDFIGTSTDESSDDLCTVQIPTSWRSAFLDSSTLQLFFDLYHSIPPSFSPLVLSCLVQIASVRRSLFNNAERAKFLSHLVDGVKRILENPQSLSDPNNYHEFCRLLARLKSNYQLGELVKVENYPEVIRLIANFTVTSLQHWEFAPNSVHYLLSLWQRLAASVPYVKATEPHMLETYTPEVTKAYITSRLESVHIILRDGLEDPLEDTGLVQQQLDQLSTIGRCEYEKTCALLVQLFDQSAQSYQELLQSASASPMDIAVQEGRLTWLVYIIGAVIGGRVSFASTDEQDAMDGELVCRVLQLMNLTDSRLAQAGNEKLELAMLSFFEQFRKIYIGDQVQKSSKLYRRLSEVLGLNDETMVLSVFIGKVITNLKYWGRCEPITSKTLQLLNDLSIGYSSVRKLVKLSAVQFMLNNHTSEHFSFLGINNQSNLTDMRCRTTFYTALGRLLMVDLGEDEDQYEQFMLPLTAAFEAVAQMFSTNSFNEQEAKRTLVGLVRDLRGIAFAFNAKTSFMMLFEWIYPSYMPILQRAIELWYHDPACTTPVLKLMAELVHNRSQRLQFDVSSPNGILLFRETSKMITMYGNRILTLGEVPKDQVYALKLKGISICFSMLKAALSGSYVNFGVFRLYGDDALENALQTFIKLLLSIPHSDLLDYPKLSQSYYSLLEVLTQDHMNFIASLEPHVIMYILSSISEGLTALDTMVCTGCCSCLDHIVTYLFKQLSRSTKKRTTPLNRESDCFLHIMQQHPAMIQQMLSTVLNIIIFEDCRNQWSMSRPLLGLILLNEKYFSDLRNSIVNSQPPEKQQAMHLCFENLMEGIERNLLTKNRDRFTQNLSAFRREVNDSMKNSTYGVNSNDMMS", "length": 1096, "header": "tr|A0A9J7HD08-1|A0A9J7HD08_CRIGR Isoform 1 of Exportin-7 isoform X2 OS=Cricetulus griseus OX=10029 GN=Xpo7 PE=3 SV=1 CANONICAL=A0A9J7HD08-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HD08-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HD08/entry#A0A9J7HD08-1", "sequence": { "sequence": "MADHVQSLAQLENLCKQLYETTDTTTRLQAEKALVEFTNSPDCLSKCQLLLERGSSSYSQLLAATCLTKLVSRTNNPLPLEQRIDIRNYVLNYLATRPKLATFVTQALIQLYARITKLGWFDCQKDDYVFRNAITDVTRFLQDSVEYCIIGVTILSQLTNEINQVSATAFLIEADTTHPLTKHRKIASSFRDSSLFDIFTLSCNLLKQASGKNLNLNDESQHGLLMQLLKLTHNCLNFDFIGTSTDESSDDLCTVQIPTSWRSAFLDSSTLQLFFDLYHSIPPSFSPLVLSCLVQIASVRRSLFNNAERAKFLSHLVDGVKRILENPQSLSDPNNYHEFCRLLARLKSNYQLGELVKVENYPEVIRLIANFTVTSLQHWEFAPNSVHYLLSLWQRLAASVPYVKATEPHMLETYTPEVTKAYITSRLESVHIILRDGLEDPLEDTGLVQQQLDQLSTIGRCEYEKTCALLVQLFDQSAQSYQELLQSASASPMDIAVQEGRLTWLVYIIGAVIGGRVSFASTDEQDAMDGELVCRVLQLMNLTDSRLAQAGNEKLELAMLSFFEQFRKIYIGDQVQKSSKLYRRLSEVLGLNDETMVLSVFIGKVITNLKYWGRCEPITSKTLQLLNDLSIGYSSVRKLVKLSAVQFMLNNHTSEHFSFLGINNQSNLTDMRCRTTFYTALGRLLMVDLGEDEDQYEQFMLPLTAAFEAVAQMFSTNSFNEQEAKRTLVGLVRDLRGIAFAFNAKTSFMMLFEWIYPSYMPILQRAIELWYHDPACTTPVLKLMAELVHNRSQRLQFDVSSPNGILLFRETSKMITMYGNRILTLGEVPKDQVYALKLKGISICFSMLKAALSGSYVNFGVFRLYGDDALENALQTFIKLLLSIPHSDLLDYPKLSQSYYSLLEVLTQDHMNFIASLEPHVIMYILSSISEGLTALDTMVCTGCCSCLDHIVTYLFKQLSRSTKKRTTPLNRESDCFLHIMQQHPAMIQQMLSTVLNIIIFEDCRNQWSMSRPLLGLILLNEKYFSDLRNSIVNSQPPEKQQAMHLCFENLMEGIERNLLTKNRDRFTQNLSAFRREVNDSMKNSTYGVNSNDMMS", "length": 1096, "header": "tr|A0A9J7HD08-1|A0A9J7HD08_CRIGR Isoform 1 of Exportin-7 isoform X2 OS=Cricetulus griseus OX=10029 GN=Xpo7 PE=3 SV=1 CANONICAL=A0A9J7HD08-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KEW1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HD08/entry#A0A9J7KEW1-1", "sequence": { "sequence": "MADHVQSLAQLENLCKQLYETTDTTTRLQAEKALVEFTNSPDCLSKCQLLLERGSSSYSQLLAATCLTKLVSRTNNPLPLEQRIDIRNYVLNYLATRPKLATFVTQALIQLYARITKLGWFDCQKDDYVFRNAITDVTRFLQDSVEYCIIGVTILSQLTNEINQADTTHPLTKHRKIASSFRDSSLFDIFTLSCNLLKQASGKNLNLNDESQHGLLMQLLKLTHNCLNFDFIGTSTDESSDDLCTVQIPTSWRSAFLDSSTLQLFFDLYHSIPPSFSPLVLSCLVQIASVRRSLFNNAERAKFLSHLVDGVKRILENPQSLSDPNNYHEFCRLLARLKSNYQLGELVKVENYPEVIRLIANFTVTSLQHWEFAPNSVHYLLSLWQRLAASVPYVKATEPHMLETYTPEVTKAYITSRLESVHIILRDGLEDPLEDTGLVQQQLDQLSTIGRCEYEKTCALLVQLFDQSAQSYQELLQSASASPMDIAVQEGRLTWLVYIIGAVIGGRVSFASTDEQDAMDGELVCRVLQLMNLTDSRLAQAGNEKLELAMLSFFEQFRKIYIGDQVQKSSKLYRRLSEVLGLNDETMVLSVFIGKVITNLKYWGRCEPITSKTLQLLNDLSIGYSSVRKLVKLSAVQFMLNNHTSEHFSFLGINNQSNLTDMRCRTTFYTALGRLLMVDLGEDEDQYEQFMLPLTAAFEAVAQMFSTNSFNEQEAKRTLVGLVRDLRGIAFAFNAKTSFMMLFEWIYPSYMPILQRAIELWYHDPACTTPVLKLMAELVHNRSQRLQFDVSSPNGILLFRETSKMITMYGNRILTLGEVPKDQVYALKLKGISICFSMLKAALSGSYVNFGVFRLYGDDALENALQTFIKLLLSIPHSDLLDYPKLSQSYYSLLEVLTQDHMNFIASLEPHVIMYILSSISEGLTALDTMVCTGCCSCLDHIVTYLFKQLSRSTKKRTTPLNRESDCFLHIMQQHPAMIQQMLSTVLNIIIFEDCRNQWSMSRPLLGLILLNEKYFSDLRNSIVNSQPPEKQQAMHLCFENLMEGIERNLLTKNRDRFTQNLSAFRREVNDSMKNSTYGVNSNDMMS", "length": 1087, "header": "tr|A0A9J7KEW1-1|A0A9J7HD08_CRIGR Computationally mapped isoform of Exportin-7 isoform X2 OS=Cricetulus griseus OX=10029 GN=Xpo7 PE=3 SV=1 CANONICAL=A0A9J7HD08-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KEW1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KEW1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035309390", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309390" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HD11", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HD11" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cfap99", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HD11", "locus": {} } ], "crossref": [ { "id": "A0A9J7HD11", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HD11", "database": "AlphaFoldDB", "categories": [] }, { "id": "100770745", "url": "https://www.ncbi.nlm.nih.gov/gene/100770745", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR039341", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039341", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100770745", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770745", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HD11", "url": "https://www.orthodb.org/?gene=A0A9J7HD11", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR34649", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34649", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34649:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34649:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF27956", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27956", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035309390", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309390", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HD11", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HD11", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HD11-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HD11-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAYYGKCIEIVIEQLDKFKPDKDNPEQFLERASASLQQVLSTQKLAFVLEVLSGCLEYRKLLTIVVDAFYVRDGYLCLWADYSLFQVICYLAMFQMDELGFQLFCSIIKSQPVGKTCKFLRFFFNPLNLCSWIKDEWSLIYETAHVKENWIDPLMRWQPEVQELINQLEGVPMDQMPLLKTKAKVTEPKEFKLTIPRPRAITMPEPVPTVAKTKHVPQSTYQEPREQQLLQMIKRYNRRKAEELLLRANMEELRCAMPRLRRDPQAQQQQQQEQQQSPPRIQRTPSLTFYKPNNLPVKLNTATILREGALYQRQVEKELQRVDKLVDGAGDFSEFLEWQKKMQAKDLEEQLAAGECRRLQGKLSHEEAILARQNLRQENKQKADQKKEETAELMLQCAERRLQEEKSMKELVEQVIEAQKNVKVAQMKLVKGRQQIVQEVMEESRELLQRSTEAAKEEQRQRCKLIAQLRALETQPTRKDKLVDLTQIPGYGLEGEMSVVELRERLALLKDTQKREKEEKRDQIIQGKRAKSRKLHNTMEQISLCRAAMGRTAALRWEEKKAQAASLGTPSRDERVLELQRRMEERAAERRRQTAQLQEPSPRVMRPQMRAQAEAQHWLEMDRSRERRLRAKQEADRTCQPTHDLKAA", "length": 648, "header": "tr|A0A9J7HD11-1|A0A9J7HD11_CRIGR Isoform 1 of Cilia- and flagella-associated protein 99 isoform X2 OS=Cricetulus griseus OX=10029 GN=Cfap99 PE=4 SV=1 CANONICAL=A0A9J7HD11-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HD11-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HD11/entry#A0A9J7HD11-1", "sequence": { "sequence": "MAYYGKCIEIVIEQLDKFKPDKDNPEQFLERASASLQQVLSTQKLAFVLEVLSGCLEYRKLLTIVVDAFYVRDGYLCLWADYSLFQVICYLAMFQMDELGFQLFCSIIKSQPVGKTCKFLRFFFNPLNLCSWIKDEWSLIYETAHVKENWIDPLMRWQPEVQELINQLEGVPMDQMPLLKTKAKVTEPKEFKLTIPRPRAITMPEPVPTVAKTKHVPQSTYQEPREQQLLQMIKRYNRRKAEELLLRANMEELRCAMPRLRRDPQAQQQQQQEQQQSPPRIQRTPSLTFYKPNNLPVKLNTATILREGALYQRQVEKELQRVDKLVDGAGDFSEFLEWQKKMQAKDLEEQLAAGECRRLQGKLSHEEAILARQNLRQENKQKADQKKEETAELMLQCAERRLQEEKSMKELVEQVIEAQKNVKVAQMKLVKGRQQIVQEVMEESRELLQRSTEAAKEEQRQRCKLIAQLRALETQPTRKDKLVDLTQIPGYGLEGEMSVVELRERLALLKDTQKREKEEKRDQIIQGKRAKSRKLHNTMEQISLCRAAMGRTAALRWEEKKAQAASLGTPSRDERVLELQRRMEERAAERRRQTAQLQEPSPRVMRPQMRAQAEAQHWLEMDRSRERRLRAKQEADRTCQPTHDLKAA", "length": 648, "header": "tr|A0A9J7HD11-1|A0A9J7HD11_CRIGR Isoform 1 of Cilia- and flagella-associated protein 99 isoform X2 OS=Cricetulus griseus OX=10029 GN=Cfap99 PE=4 SV=1 CANONICAL=A0A9J7HD11-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 569, "start_aa": "Thr", "end_pos": 569, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr569", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HD11", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HD11" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100770745", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770745", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 569 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], 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"type": "recommended", "evidence": [ { "id": "A0A9J7HD13", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HD13" } ] }, { "name": "LOC113839123", "type": "synonym", "evidence": [ { "id": "XP_035309769", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309769" } ] } ], "protein_names": [ { "name": "Chitinase-like protein 4", "type": "synonym", "evidence": [ { "id": "A0A9J7HD13", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HD13/entry#names_and_taxonomy" } ] }, { "name": "chitinase-like protein 4", "type": "synonym", "evidence": [ { "id": "XP_035309769", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309769" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023277275.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: incomplete on the carboxy end.", "evidence": [ { "database": "RefSeq", "id": "XP_035309769", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309769" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HD13", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HD13" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113839123", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HD13", "locus": {} } ], "crossref": [ { "id": "A0A9J7HD13", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HD13", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd02872", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02872", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "113839123", "url": "https://www.ncbi.nlm.nih.gov/gene/113839123", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001223", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001223", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011583", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011583", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017853", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017853", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029070", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029070", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050314", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050314", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113839123", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113839123", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HD13", "url": "https://www.orthodb.org/?gene=A0A9J7HD13", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11177", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11177", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11177:SF140", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11177:SF140", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00704", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00704", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035309769", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309769", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HD13", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HD13", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": 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"total", "count": 0 } ], "sort_fields": [] } ] }, { "uniprot_canonical_ac": "A0A9J7HD16-1", "uniprot_ac": "A0A9J7HD16", "uniprot_id": "A0A9J7HD16_CRIGR", "mass": { "chemical_mass": 52096.0, "monoisotopic_mass": 52096.0 }, "refseq": { "ac": "XP_035307920", "name": "solute carrier family 23 member 1-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307920" }, "gene_names": [ { "name": "LOC100762656", "type": "recommended", "evidence": [ { "id": "A0A9J7HD16", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HD16" } ] }, { "name": "LOC100762656", "type": "synonym", "evidence": [ { "id": "XP_035307920", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307920" } ] } ], "protein_names": [ { "name": "Solute carrier family 23 member 1-like", "type": "synonym", "evidence": [ { "id": "A0A9J7HD16", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HD16/entry#names_and_taxonomy" } ] }, { "name": "solute 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This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035307920", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307920" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HD16", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HD16" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100762656", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HD16", "locus": {} } ], "crossref": [ { "id": "A0A9J7HD16", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HD16", "database": "AlphaFoldDB", "categories": [] }, { "id": "100762656", "url": "https://www.ncbi.nlm.nih.gov/gene/100762656", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006042", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006042", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006043", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006043", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100762656", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762656", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HD16", "url": "https://www.orthodb.org/?gene=A0A9J7HD16", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11119", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11119", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00860", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00860", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035307920", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307920", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HD16", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HD16", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HD16-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HD16-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLSLPAWKCPEWTLNASLVNTSSPEFIEEWQKRIRELQGAVMVASCVQMLVGFSGLIGFLMRYIGPLTIAPTIALVALPLFESAGNDAGIHWGISALTIFLIVLFSQYLKNVMVPVPVYGREKKCHISKFNLFQVFPVLLALCLSWLFCFVLTVTNTLPKSPTAYGYLARTDTKGSVLSQAPWFRFPYPGQWGLPTISLAGVFGIIAGVISSMVESVGDYHACARLVGAPPPPKHAINRGIGIEGLGCLLAGAWGTGNGTTSYSENVGALGITRVGSRMVIVTAGCVLLLMGMFGKIGAAFATIPTPVIGGMFLVMFGVISAVGISNLQYVDMNSSRNLFVFGFSIYCGLAIPNWVNENPEKLQTGVLQLDQVIQVLLTTGMFVGGFLGFVLDNTIPGTLEERGLLAWSQIQEDSEETVKASKVYGLPWGIGTKFCTSSCTRVLPFWPRLDHRGHEMGVSQLTLCSQTPSGKNLWGVTETKM", "length": 482, "header": "tr|A0A9J7HD16-1|A0A9J7HD16_CRIGR Isoform 1 of Solute carrier family 23 member 1-like OS=Cricetulus griseus OX=10029 GN=LOC100762656 PE=3 SV=1 CANONICAL=A0A9J7HD16-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HD16-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HD16/entry#A0A9J7HD16-1", "sequence": { "sequence": "MLSLPAWKCPEWTLNASLVNTSSPEFIEEWQKRIRELQGAVMVASCVQMLVGFSGLIGFLMRYIGPLTIAPTIALVALPLFESAGNDAGIHWGISALTIFLIVLFSQYLKNVMVPVPVYGREKKCHISKFNLFQVFPVLLALCLSWLFCFVLTVTNTLPKSPTAYGYLARTDTKGSVLSQAPWFRFPYPGQWGLPTISLAGVFGIIAGVISSMVESVGDYHACARLVGAPPPPKHAINRGIGIEGLGCLLAGAWGTGNGTTSYSENVGALGITRVGSRMVIVTAGCVLLLMGMFGKIGAAFATIPTPVIGGMFLVMFGVISAVGISNLQYVDMNSSRNLFVFGFSIYCGLAIPNWVNENPEKLQTGVLQLDQVIQVLLTTGMFVGGFLGFVLDNTIPGTLEERGLLAWSQIQEDSEETVKASKVYGLPWGIGTKFCTSSCTRVLPFWPRLDHRGHEMGVSQLTLCSQTPSGKNLWGVTETKM", "length": 482, "header": "tr|A0A9J7HD16-1|A0A9J7HD16_CRIGR Isoform 1 of Solute carrier family 23 member 1-like OS=Cricetulus griseus OX=10029 GN=LOC100762656 PE=3 SV=1 CANONICAL=A0A9J7HD16-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "uniprot_canonical_ac": "A0A9J7HD56-1", "uniprot_ac": "A0A9J7HD56", "uniprot_id": "A0A9J7HD56_CRIGR", "mass": { "chemical_mass": 23994.0, "monoisotopic_mass": 23994.0 }, "refseq": { "ac": "XP_035294008", "name": "uncharacterized protein LOC100768212", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035294008" }, "gene_names": [ { "name": "LOC100768212", "type": "recommended", "evidence": [ { "id": "A0A9J7HD56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HD56" } ] }, { "name": "LOC100768212", "type": "synonym", "evidence": [ { "id": "XP_035294008", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035294008" } ] } ], "protein_names": [ { "name": "Uncharacterized protein LOC100768212", "type": "synonym", "evidence": [ { "id": "A0A9J7HD56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HD56/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein LOC100768212", "type": "synonym", "evidence": [ { "id": "XP_035294008", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035294008" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 50% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003617213.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035294008", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035294008" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HD56", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HD56" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100768212", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HD56", "locus": {} } ], "crossref": [ { "id": "A0A9J7HD56", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HD56", "database": "AlphaFoldDB", "categories": [] }, { "id": "100768212", "url": "https://www.ncbi.nlm.nih.gov/gene/100768212", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR031577", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031577", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100768212", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768212", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HD56", "url": "https://www.orthodb.org/?gene=A0A9J7HD56", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PF15791", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15791", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035294008", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035294008", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HD56", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HD56", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HD56-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HD56-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAEDPNSQMNSNKRPTKSGRMDEQQNAIYPSEVQPHIMPRQEISQVPVVLQWPTAFIPINCTPVTLSPQMMIALSWDPCQPVTIPCLVSNVVLQPCINTIPPVLPAQVLVSSNICLQGRGNANLAPGNSTQISDASNQGREICTQLPDASNQGREICTQINDASNQGPEVYTQIPAISNQRAVSAEVDRQKVLDAAEALLILHNSPQAWEETRSIPGPDGE", "length": 221, "header": "tr|A0A9J7HD56-1|A0A9J7HD56_CRIGR Isoform 1 of Uncharacterized protein LOC100768212 OS=Cricetulus griseus OX=10029 GN=LOC100768212 PE=3 SV=1 CANONICAL=A0A9J7HD56-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HD56-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HD56/entry#A0A9J7HD56-1", "sequence": { "sequence": "MAEDPNSQMNSNKRPTKSGRMDEQQNAIYPSEVQPHIMPRQEISQVPVVLQWPTAFIPINCTPVTLSPQMMIALSWDPCQPVTIPCLVSNVVLQPCINTIPPVLPAQVLVSSNICLQGRGNANLAPGNSTQISDASNQGREICTQLPDASNQGREICTQINDASNQGPEVYTQIPAISNQRAVSAEVDRQKVLDAAEALLILHNSPQAWEETRSIPGPDGE", "length": 221, "header": "tr|A0A9J7HD56-1|A0A9J7HD56_CRIGR Isoform 1 of Uncharacterized protein LOC100768212 OS=Cricetulus griseus OX=10029 GN=LOC100768212 PE=3 SV=1 CANONICAL=A0A9J7HD56-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [], "pathway": [ { "id": "cge:100768212", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768212", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HD56", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HD56" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 128, "end_pos": 130, "annotation": "n_glycosylation_sequon" }, { "start_pos": 60, "end_pos": 62, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": 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0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "uniprot_canonical_ac": "A0A9J7HD58-1", "uniprot_ac": "A0A9J7HD58", 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This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. 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"MLETYKNLADIGKTIQHGKAFICTHIPCRHERSQIGERTSQHTQCVNAFTYNSDLQRNKRTHNREKPYECNQCGKAFSCHSLLQRHKRSHTGEKPYECTQCGKAFSRHSHLQSHKMTHTGEKPYECTQCGKAFAQHSHLQRHKMSHTGEKPYECNQCGKAFSQHSNLQIHKRTHTGEKPYGCNQCGKAFAHPRTLKIHKRTHTGEKPYECTQCSKAFSRHSHLQRHKTSHTGEKPYECTQCDKAFSHHSNLQIHKRTHTGEKPYECTQCGKAFPQHHTLQSHKRTHTGEKPYECSQCGKAFSQHILLQGHKRTHTGEKPYECNQCGKNFSGHSNLQVHKRTHTGMKPYECHQCGKAFSHHNTLQKHKRIHTGEKPYKCNQ", "length": 380, "header": "tr|A0A9J7HD99-1|A0A9J7HD99_CRIGR Isoform 1 of Zinc finger protein 431-like isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC113838903 PE=3 SV=1 CANONICAL=A0A9J7HD99-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HD99-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HD99/entry#A0A9J7HD99-1", "sequence": { "sequence": 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"evidence": [ { "database": "UniProtKB", "id": "A0A9J7HD99", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HD99" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HD99", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HD99" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HD99", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HD99" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HD99", "url": 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"https://www.uniprot.org/uniprotkb/A0A9J7HD99" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 40, "end_pos": 67, "start_aa": "Ser", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 328, "end_pos": 330 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { 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"o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "uniprot_canonical_ac": "A0A9J7HDC7-1", "uniprot_ac": "A0A9J7HDC7", "uniprot_id": "A0A9J7HDC7_CRIGR", "mass": { "chemical_mass": 97993.0, "monoisotopic_mass": 97993.0 }, "refseq": { "ac": "XP_035309602", "name": "vomeronasal type-2 receptor 116 isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309602" }, "gene_names": [ { "name": "LOC100770699", "type": "recommended", "evidence": [ { "id": "A0A9J7HDC7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDC7" } ] }, { "name": "LOC100770699", "type": "synonym", "evidence": [ { "id": "XP_035309602", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309602" } ] } ], "protein_names": [ { "name": "Vomeronasal type-2 receptor 116 isoform X3", "type": "synonym", "evidence": [ { "id": "A0A9J7HDC7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDC7/entry#names_and_taxonomy" } ] }, { "name": "vomeronasal type-2 receptor 116 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_035309602", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309602" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276845.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035309602", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309602" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HDC7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDC7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100770699", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDC7", "locus": {} } ], "crossref": [ { "id": "A0A9J7HDC7", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HDC7", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd06365", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06365", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd15283", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15283", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100770699", "url": "https://www.ncbi.nlm.nih.gov/gene/100770699", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000068", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000068", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000337", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000337", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001828", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001828", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004073", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004073", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011500", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011500", "database": 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"MFNLTFLLLLLNIQIHMASFMQSRCFWKMKQKEGKHGDLKKGCFFSPRTVQWPVDKEYFNQILNIQTPTENYKYALALAFTLDELNRNPDLLPNKSLVFSSYKDNCFGLSQLYSMSQILPQDPVFFPNYNCEEDIVCSVMLTGPNWETSAILLAYMDLWKSQQVIHLTYGSYHPILSDHEKFPYLYQMASKHTSLALAMVSVILHFCWNWVGLVISDNDQGTQFRSYLRRELEKNTVCFAFVNMIPINMQLYISRAELYYNQINTSSTNVVIIYGDTDSTLALSFQMWESRGLQKIWVITSHWDVTTSKRDFMLDSSHMTLAFVHHHGEISGFKDFVQTMNPLKYTDEYLARMEWMKFNCEVFTSNCKTLKNCSLNSPMEWLVVRSIDLSFSDGIYDIYNAVYALAHALHEMFLQQVEYTTMDNGKGHSSICLKLNTFLKKTQFTNPVGDRVNMNQKEEHQEEYYILQIWNFPHGLRFKIKIVQFSPYFPTGEQLHVYEEMIKWATGNTQMPPSVCSADCGPGFRKFWQEGMAVCCFKCQPCPENEISNETNMDRCVKCPDDQYANIEQNQCMHKEVIFLSYEDHLGITLGLIASCFSAFTTMVLGVFVKHHDTPIVKANNQKLSYILLISLFFCFLCSFLFIGRPNTATCIFQQITFGVVFTVAVSAVLAKTVIVILAFKVTVPDRRMRYFLISGAPNYIIAICTLIQVIICLVWLGTSPPSVNIDAHSEHGHIIIVCSKGSVTAFYCVLGYLACLAQVSFTVAFLSRNLPNTFNEAKFLTFSMLLFCCVWVTFLPVYHSTKGKVMVAVEIFSILASSAGMLGCIFVPKCFIILFRPARQISSKYQGKITFQN", "length": 854, "header": "tr|A0A9J7HDC7-1|A0A9J7HDC7_CRIGR Isoform 1 of Vomeronasal type-2 receptor 116 isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100770699 PE=3 SV=1 CANONICAL=A0A9J7HDC7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HDC7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDC7/entry#A0A9J7HDC7-1", "sequence": { "sequence": "MFNLTFLLLLLNIQIHMASFMQSRCFWKMKQKEGKHGDLKKGCFFSPRTVQWPVDKEYFNQILNIQTPTENYKYALALAFTLDELNRNPDLLPNKSLVFSSYKDNCFGLSQLYSMSQILPQDPVFFPNYNCEEDIVCSVMLTGPNWETSAILLAYMDLWKSQQVIHLTYGSYHPILSDHEKFPYLYQMASKHTSLALAMVSVILHFCWNWVGLVISDNDQGTQFRSYLRRELEKNTVCFAFVNMIPINMQLYISRAELYYNQINTSSTNVVIIYGDTDSTLALSFQMWESRGLQKIWVITSHWDVTTSKRDFMLDSSHMTLAFVHHHGEISGFKDFVQTMNPLKYTDEYLARMEWMKFNCEVFTSNCKTLKNCSLNSPMEWLVVRSIDLSFSDGIYDIYNAVYALAHALHEMFLQQVEYTTMDNGKGHSSICLKLNTFLKKTQFTNPVGDRVNMNQKEEHQEEYYILQIWNFPHGLRFKIKIVQFSPYFPTGEQLHVYEEMIKWATGNTQMPPSVCSADCGPGFRKFWQEGMAVCCFKCQPCPENEISNETNMDRCVKCPDDQYANIEQNQCMHKEVIFLSYEDHLGITLGLIASCFSAFTTMVLGVFVKHHDTPIVKANNQKLSYILLISLFFCFLCSFLFIGRPNTATCIFQQITFGVVFTVAVSAVLAKTVIVILAFKVTVPDRRMRYFLISGAPNYIIAICTLIQVIICLVWLGTSPPSVNIDAHSEHGHIIIVCSKGSVTAFYCVLGYLACLAQVSFTVAFLSRNLPNTFNEAKFLTFSMLLFCCVWVTFLPVYHSTKGKVMVAVEIFSILASSAGMLGCIFVPKCFIILFRPARQISSKYQGKITFQN", "length": 854, "header": "tr|A0A9J7HDC7-1|A0A9J7HDC7_CRIGR Isoform 1 of Vomeronasal type-2 receptor 116 isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100770699 PE=3 SV=1 CANONICAL=A0A9J7HDC7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K372-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDC7/entry#A0A9J7K372-1", "sequence": { "sequence": "DAACLQLNSILKKTHFINPLGDRVNLKQKENIQEEYDIFHIWNFPHGVRFKVKIGKYSPYHTHGQQLHIYEDMLEWTTGNKQMLASVCSADCGPGFRKFWQEGMAVCCFECSPCPENEISNETNVDQCVKCPEDQFANTEQNKCIPKAVIFMNYEDPLGMALALMALCFSAFTALVLGVFFKHHDTPIVKANNRNLSYNLLISLFFCFLCPLLFIGQPNTATCMLQQITFGVVFTVAVSTVLAKTVTVILAFKVTVPGRRMRYFLVSGAPNYIIAICTLIQVIICSVWFGTSPPSVNIDAHSEHGQIIIVCIKGSVTAFYCVLGYLACLAHLSFTVAFLSRNLPNTFNEAKFLTFSMLLFCCIWITFLPVYHSTKGKVMVAVEIFSILASSAGILGCIFVPKCYLILLRQQQKSLQNIIENSPSRTDISFIPTDKYI", "length": 437, "header": "tr|A0A9J7K372-1|A0A9J7HDC7_CRIGR Computationally mapped isoform of Vomeronasal type-2 receptor 116 isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100770699 PE=3 SV=1 CANONICAL=A0A9J7HDC7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [], "pathway": [ { "id": "cge:100770699", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770699", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "G protein-coupled receptor activity", "id": "GO:0004930", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004930", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HDC7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDC7" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HDC7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDC7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 264, "end_pos": 266, "annotation": "n_glycosylation_sequon" }, { "start_pos": 372, "end_pos": 374, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3, "end_pos": 5, "annotation": "n_glycosylation_sequon" }, { "start_pos": 549, "end_pos": 551, "annotation": "n_glycosylation_sequon" }, { "start_pos": 94, "end_pos": 96, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7HDC7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDC7" }, { "id": "PS50259", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50259" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 3 profile", "eco_id": "ECO_0000259", "start_pos": 586, "end_pos": 850, "start_aa": "Leu", "end_aa": "Ile", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 264, "end_pos": 266 }, { "start_pos": 372, "end_pos": 374 }, { "start_pos": 3, "end_pos": 5 }, { "start_pos": 549, "end_pos": 551 }, { "start_pos": 94, "end_pos": 96 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "uniprot_canonical_ac": "A0A9J7J8R3-1", "uniprot_ac": "A0A9J7J8R3", "uniprot_id": "A0A9J7J8R3_CRIGR", "mass": { "chemical_mass": 86945.0, "monoisotopic_mass": 86945.0 }, "refseq": { "ac": "XP_027247404", "name": "muskelin isoform X4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027247404" }, "gene_names": [ { "name": "Mkln1", "type": "recommended", "evidence": [ { "id": "A0A9J7J8R3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8R3" } ] }, { "name": "Mkln1", "type": "synonym", "evidence": [ { "id": "XP_027247404", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027247404" } ] } ], "protein_names": [ { "name": "Muskelin isoform X4", "type": "synonym", "evidence": [ { "id": "A0A9J7J8R3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8R3/entry#names_and_taxonomy" } ] }, { "name": "muskelin isoform X4", "type": "synonym", "evidence": [ { "id": "XP_027247404", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027247404" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027247404", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027247404" } ] }, { "annotation": "Component of the CTLH E3 ubiquitin-protein ligase complex that selectively accepts ubiquitin from UBE2H and mediates ubiquitination and subsequent proteasomal degradation of the transcription factor HBP1. Required for internalization of the GABA receptor GABRA1 from the cell membrane via endosomes and subsequent GABRA1 degradation. Acts as a mediator of cell spreading and cytoskeletal responses to the extracellular matrix component THBS1.", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QKH6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKH6#function" }, { "database": "UniProtKB", "id": "ARBA00058549", "url": "https://www.uniprot.org/uniprotkb/ARBA00058549#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J8R3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8R3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Mkln1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8R3", "locus": {} } ], "crossref": [ { "id": "A0A9J7J8R3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7J8R3", "database": "AlphaFoldDB", "categories": [] }, { "id": "100754523", "url": "https://www.ncbi.nlm.nih.gov/gene/100754523", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006594", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006594", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006595", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006595", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006652", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006652", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR010565", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010565", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011043", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011043", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015915", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015915", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052456", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052456", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056737", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056737", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100754523", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754523", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7J8R3", "url": "https://www.orthodb.org/?gene=A0A9J7J8R3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15526", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15526", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15526:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15526:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01344", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01344", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF06588", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06588", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24981", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24981", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027247404", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027247404", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QKH6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKH6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QKH6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKH6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F0Q9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0Q9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F0Q9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F0Q9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J8R3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8R3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J8R3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8R3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAGGAVAAAPECRLLPYALHKWSSFSSTYLPENILVDKPNDQSSRWSSESNYPPQYLILKLERPAIVQNITFGKYEKTHVCNLKKFKVFGGMNEENMTELLSSGLKNDYNKETFTLKHKIDEQMFPCRFIKIVPLLSWGPSFNFSIWYVELSGIDDPDIVQPCLNWYSKYREQEAIRLCLKHFRQHNYTEAFESLQKKTKIALEHPMLTDMHDKLVLKGDFDACEELIEKAVNDGLFNQYISQQEYKPRWSQIIPKSTKDWSNVLLHMFPLKKDGSRGDGEDNRPGMRGGHQMVIDVQTETVYLFGGWDGTQDLADFWAYSVKENQWTCISRDTEKENGPSARSCHKMCIDIQRRQIYTLGRYLDSSVRNSKSLKSDFYRYDIDTNTWMLLSEDTAADGGPKLVFDHQMCMDSEKHMIYTFGGRILTCNGSVDDSRASEPQFSGLFAFNCQCQTWKLLREDSCNAGPEDIQSRIGHCMLFHSKNRCLYVFGGQRSKTYLNDFFSYDVDSDHVDIISDGTKKDSGMVPMTGFTQRATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWSCVYKNDQAAKDNLSKSLQEEEPCPRFAHQLVYDELHKVHYLFGGNPGKSCSPKMRLDDFWSLKLCRPSKDYLLRHCKYLIRKHRFEEKAQMDPLSALKYLQNDLYITVDHSDPEETKEFQLLASALFKSGSDFTALGFSDVDHTYAQRTQLFDTLVNFFPDSMTPPKGNLVDLITL", "length": 753, "header": "tr|A0A9J7J8R3-1|A0A9J7J8R3_CRIGR Isoform 1 of Muskelin isoform X4 OS=Cricetulus griseus OX=10029 GN=Mkln1 PE=4 SV=1 CANONICAL=A0A9J7J8R3-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QKH6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8R3/entry#A0A8C2QKH6-1", "sequence": { "sequence": "MAAGGAVAAAPECRLLPYALHKWSSFSSTYLPENILVDKPNDQSSRWSSESNYPPQYLILKLERPAIVQNITFGKYEKTHVCNLKKFKVFGGMNEENMTELLSSGLKNDYNKETFTLKHKIDEQMFPCRFIKIVPLLSWGPSFNFSIWYVELSGIDDPDIVQPCLNWYSKYREQEAIRLCLKHFRQHNYTEAFESLQKKTKIALEHPMLTDMHDKLVLKGDFDACEELIEKAVNDGLFNQYISQQEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTETVYLFGGWDGTQDLADFWAYSVKENQWTCISRDTEKENGPSARSCHKMCIDIQRRQIYTLGRYLDSSVRNSKSLKSDFYRYDIDTNTWMLLSEDTAADGGPKLVFDHQMCMDSEKHMIYTFGGRILTCNGSVDDSRASEPQFSGLFAFNCQCQTWKLLREDSCNAGPEDIQSRIGHCMLFHSKNRCLYVFGGQRSKTYLNDFFSYDVDSDHVDIISDGTKKDSGMVPMTGFTQRATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWSCVYKNDQAAKDNLSKSLQEEEPCPRFAHQLVYDELHKVHYLFGGNPGKSCSPKMRLDDFWSLKLCRPSKDYLLRHCKYLIRKHRFEEKAQMDPLSALKYLQNDLYITVDHSDPEETKEFQLLASALFKSGSDFTALGFSDVDHTYAQRTQLFDTLVNFFPDSMTPPKGNLVDLITL", "length": 735, "header": "tr|A0A8C2QKH6-1|A0A9J7J8R3_CRIGR Computationally mapped isoform of Muskelin isoform X4 OS=Cricetulus griseus OX=10029 GN=Mkln1 PE=4 SV=1 CANONICAL=A0A9J7J8R3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F0Q9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8R3/entry#A0A9J7F0Q9-1", "sequence": { "sequence": "MNEENMTELLSSGLKNDYNKETFTLKHKIDEQMFPCRFIKIVPLLSWGPSFNFSIWYVELSGIDDPDIVQPCLNWYSKYREQEAIRLCLKHFRQHNYTEAFESLQKKTKIALEHPMLTDMHDKLVLKGDFDACEELIEKAVNDGLFNQYISQQEYKPRWSQIIPKSTKDWSNVLLHMFPLKKDGSRGDGEDNRPGMRGGHQMVIDVQTETVYLFGGWDGTQDLADFWAYSVKENQWTCISRDTEKENGPSARSCHKMCIDIQRRQIYTLGRYLDSSVRNSKSLKSDFYRYDIDTNTWMLLSEDTAADGGPKLVFDHQMCMDSEKHMIYTFGGRILTCNGSVDDSRASEPQFSGLFAFNCQCQTWKLLREDSCNAGPEDIQSRIGHCMLFHSKNRCLYVFGGQRSKTYLNDFFSYDVDSDHVDIISDGTKKDSGMVPMTGFTQRATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWSCVYKNDQAAKDNLSKSLQEEEPCPRFAHQLVYDELHKVHYLFGGNPGKSCSPKMRLDDFWSLKLCRPSKDYLLRHCKYLIRKHRFEEKAQMDPLSALKYLQNDLYITVDHSDPEETKEFQLLASALFKSGSDFTALGFSDVDHTYAQRTQLFDTLVNFFPDSMTPPKGNLVDLITL", "length": 661, "header": "tr|A0A9J7F0Q9-1|A0A9J7J8R3_CRIGR Computationally mapped isoform of Muskelin isoform X4 OS=Cricetulus griseus OX=10029 GN=Mkln1 PE=4 SV=1 CANONICAL=A0A9J7J8R3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J8R3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8R3/entry#A0A9J7J8R3-1", "sequence": { "sequence": "MAAGGAVAAAPECRLLPYALHKWSSFSSTYLPENILVDKPNDQSSRWSSESNYPPQYLILKLERPAIVQNITFGKYEKTHVCNLKKFKVFGGMNEENMTELLSSGLKNDYNKETFTLKHKIDEQMFPCRFIKIVPLLSWGPSFNFSIWYVELSGIDDPDIVQPCLNWYSKYREQEAIRLCLKHFRQHNYTEAFESLQKKTKIALEHPMLTDMHDKLVLKGDFDACEELIEKAVNDGLFNQYISQQEYKPRWSQIIPKSTKDWSNVLLHMFPLKKDGSRGDGEDNRPGMRGGHQMVIDVQTETVYLFGGWDGTQDLADFWAYSVKENQWTCISRDTEKENGPSARSCHKMCIDIQRRQIYTLGRYLDSSVRNSKSLKSDFYRYDIDTNTWMLLSEDTAADGGPKLVFDHQMCMDSEKHMIYTFGGRILTCNGSVDDSRASEPQFSGLFAFNCQCQTWKLLREDSCNAGPEDIQSRIGHCMLFHSKNRCLYVFGGQRSKTYLNDFFSYDVDSDHVDIISDGTKKDSGMVPMTGFTQRATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWSCVYKNDQAAKDNLSKSLQEEEPCPRFAHQLVYDELHKVHYLFGGNPGKSCSPKMRLDDFWSLKLCRPSKDYLLRHCKYLIRKHRFEEKAQMDPLSALKYLQNDLYITVDHSDPEETKEFQLLASALFKSGSDFTALGFSDVDHTYAQRTQLFDTLVNFFPDSMTPPKGNLVDLITL", "length": 753, "header": "tr|A0A9J7J8R3-1|A0A9J7J8R3_CRIGR Isoform 1 of Muskelin isoform X4 OS=Cricetulus griseus OX=10029 GN=Mkln1 PE=4 SV=1 CANONICAL=A0A9J7J8R3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QKH6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKH6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QKH6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QKH6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100754523", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754523", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 9, "go_terms": [ { "name": "GABA-ergic synapse", "id": "GO:0098982", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098982", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J8R3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8R3" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J8R3", "url": 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"database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003498272" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613685.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Apr 30, 2014 this sequence version replaced XP_003498272.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003498272", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003498272" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JBA5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBA5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ddhd2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBA5", "locus": {} } ], "crossref": [ { "id": "A0A9J7JBA5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JBA5", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd09516", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09516", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100772516", "url": 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"id": "cge:100772516", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772516", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7F5Q1", "url": "https://www.orthodb.org/?gene=A0A9J7F5Q1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7F9V9", "url": "https://www.orthodb.org/?gene=A0A9J7F9V9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JBA5", "url": "https://www.orthodb.org/?gene=A0A9J7JBA5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23509", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23509", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23509:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23509:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00536", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00536", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02825", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02825", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02862", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02862", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23464", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23464", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003498272", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003498272", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F5Q1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5Q1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F5Q1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F5Q1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F9V9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9V9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F9V9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9V9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HBT1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBT1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HBT1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBT1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JBA5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBA5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JBA5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBA5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3H1I9", "url": "https://www.uniprot.org/uniprotkb/G3H1I9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3H1I9-1", "url": "https://www.uniprot.org/uniprotkb/G3H1I9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MHHSPCGDTLAGSAKMSEMSSVESSQEHLSDPSPSPNSSSSFELIDMDVSSLYEPVSSHWFYCKVIDSKEIWIPFNSDDSQQLEEAHGSGKDCNERVVPTDGGRYDVHLGERMRYAVYWDEPPSEVRRCTWFYKGDKDNKYVPYSESFSQVLEETYMLAVTLDEWKKKLESPNREIIVLHNPKLMVHYQPVAGSDEWGSTSTEQGRPRSVKRGVENIPVDIHCGEPLQIDHLVFVVHGIGPACDLRFRSIVQCVNDFRSVSLNLLQTHFKKAQENQQIGRVEFLPVNWHSPLHSTGVDVDLQRITLPSINRLRHFTNDTILDVFFYNSPTYCQTIVDTVASEMNRIYTLFLQRNPEFKGGVSIAGHSLGSLILFDILTNQKDSFGDIDSEKGSLRTVEDQGDVPTLEEDLKKLQLSEFFTVFEKEKVDKEALALCTEKDLQEMGIPLGPRKKILNHFRTRKNSMGVNRPDTSASEVNSSKENGDYLDVGIGQVSVKYPRLNYKPEIFFAFGSPIGMFLTVRGLRRIDPNYKFPTCKGFFNIYHPFDPVAYRIEPMVAPEVEFEPMLIPHHKGRKRMHLELREGFTRMSMDLKNNLLGSLRMAWKSFTRAPYPALQASETTEETEAEPESGSEKSSEVNTEETPVEVKEELPINVGMLNGGQRIDYVLQEKPIESFNEYLFALQSHLCYWESEDTVLLVLKEIYQTQGIFLDQPLQ", "length": 715, "header": "tr|A0A9J7JBA5-1|A0A9J7JBA5_CRIGR Isoform 1 of Phospholipase DDHD2 isoform X4 OS=Cricetulus griseus OX=10029 GN=Ddhd2 PE=3 SV=1 CANONICAL=A0A9J7JBA5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F5Q1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBA5/entry#A0A9J7F5Q1-1", "sequence": { "sequence": "MHHSPCGDTLAGSAKMSEMSSVESSQEHLSDPSPSPNSSSSFELIDMDVSSLYEPVSSHWFYCKVIDSKEIWIPFNSDDSQQLEEAHGSGKDCNERVVPTDGGRYDVHLGERMRYAVYWDEPPSEVRRCTWFYKGDKDNKYVPYSESFSQVLEETYMLAVTLDEWKKKLESPNREIIVLHNPKLMVHYQPVAGSDEWGSTSTEQGRPRSVKRGVENIPVDIHCGEPLQIDHLVFVVHGIGPACDLRFRSIVQCVNDFRSVSLNLLQTHFKKAQENQQIGRVEFLPVNWHSPLHSTGVDVDLQRITLPSINRLRHFTNDTILDVFFYNSPTYCQTIVDTVASEMNRIYTLFLQRNPEFKGGVSIAGHSLGSLILFDILTNQKDSFGDIDSEKGSLRTVEDQGDVPTLEEDLKKLQLSEFFTVFEKEKVDKEALALCTEKDLQEMGIPLGPRKKILNHFRTRKNSMGVNRPDTSASEVNSSKENGDYLDVGIGQVSVKYPRLNYKPEIFFAFGSPIGMFLTVRGLRRIDPNYKFPTCKGFFNIYHPFDPVAYRIEPMVAPEVEFEPMLIPHHKGRKRMHLELREGFTRMSMDLKNNLLGSLRMAWKSFTRAPYPALQASETTEETEAEPESGSEKSSVNTEETPVEVKEELPINVGMLNGGQRIDYVLQEKPIESFNEYLFALQSHLCYWESEDTVLLVLKEIYQTQGIFLDQPLQ", "length": 714, "header": "tr|A0A9J7F5Q1-1|A0A9J7JBA5_CRIGR Computationally mapped isoform of Phospholipase DDHD2 isoform X4 OS=Cricetulus griseus OX=10029 GN=Ddhd2 PE=3 SV=1 CANONICAL=A0A9J7JBA5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F9V9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBA5/entry#A0A9J7F9V9-1", "sequence": { "sequence": "MHHSPCGDTLAGSAKMSEMSSVESSQEHLSDPSPSPNSSSSFELIDMDVSSLYEPVSSHWFYCKVIDSKEIWIPFNSDDSQQLEEAHGSGKDCNERVVPTDGGRYDVHLGERMRYAVYWDEPPSEVRRCTWFYKGDKDNKYVPYSESFSQVLEETYMLAVTLDEWKKKLESPNREIIVLHNPKLMVHYQPVAGSDEWGSTSTEQGRPRSVKRGVENIPVDIHCVNDFRSVSLNLLQTHFKKAQENQQIGRVEFLPVNWHSPLHSTGVDVDLQRITLPSINRLRHFTNDTILDVFFYNSPTYCQTIVDTVASEMNRIYTLFLQRNPEFKGGVSIAGHSLGSLILFDILTNQKDSFGDIDSEKGSLRTVEDQGDVPTLEEDLKKLQLSEFFTVFEKEKVDKEALALCTEKDLQEMGIPLGPRKKILNHFRTRKNSMGVNRPDTSASEVNSSKENGDYLDVGIGQVSVKYPRLNYKPEIFFAFGSPIGMFLTVRGLRRIDPNYKFPTCKGFFNIYHPFDPVAYRIEPMVAPEVEFEPMLIPHHKGRKRMHLELREGFTRMSMDLKNNLLGSLRMAWKSFTRAPYPALQASETTEETEAEPESGSEKSSEVNTEETPVEVKEELPINVGMLNGGQRIDYVLQEKPIESFNEYLFALQSHLCYWESEDTVLLVLKEIYQTQGIFLDQPLQ", "length": 685, "header": "tr|A0A9J7F9V9-1|A0A9J7JBA5_CRIGR Computationally mapped isoform of Phospholipase DDHD2 isoform X4 OS=Cricetulus griseus OX=10029 GN=Ddhd2 PE=3 SV=1 CANONICAL=A0A9J7JBA5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HBT1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBA5/entry#A0A9J7HBT1-1", "sequence": { "sequence": "MALETYMLAVTLDEWKKKLESPNREIIVLHNPKLMVHYQPVAGSDEWGSTSTEQGRPRSVKRGVENIPVDIHCGEPLQIDHLVFVVHGIGPACDLRFRSIVQCVNDFRSVSLNLLQTHFKKAQENQQIGRVEFLPVNWHSPLHSTGVDVDLQRITLPSINRLRHFTNDTILDVFFYNSPTYCQTIVDTVASEMNRIYTLFLQRNPEFKGGVSIAGHSLGSLILFDILTNQKDSFGDIDSEKGSLRTVEDQGDVPTLEEDLKKLQLSEFFTVFEKEKVDKEALALCTEKDLQEMGIPLGPRKKILNHFRTRKNSMGVNRPDTSASEVNSSKENGDYLDVGIGQVSVKYPRLNYKPEIFFAFGSPIGMFLTVRGLRRIDPNYKFPTCKGFFNIYHPFDPVAYRIEPMVAPEVEFEPMLIPHHKGRKRMHLELREGFTRMSMDLKNNLLGSLRMAWKSFTRAPYPALQASETTEETEAEPESGSEKSSEVNTEETPVEVKEELPINVGMLNGGQRIDYVLQEKPIESFNEYLFALQSHLCYWESEDTVLLVLKEIYQTQGIFLDQPLQ", "length": 565, "header": "tr|A0A9J7HBT1-1|A0A9J7JBA5_CRIGR Computationally mapped isoform of Phospholipase DDHD2 isoform X4 OS=Cricetulus griseus OX=10029 GN=Ddhd2 PE=3 SV=1 CANONICAL=A0A9J7JBA5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JBA5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBA5/entry#A0A9J7JBA5-1", "sequence": { "sequence": "MHHSPCGDTLAGSAKMSEMSSVESSQEHLSDPSPSPNSSSSFELIDMDVSSLYEPVSSHWFYCKVIDSKEIWIPFNSDDSQQLEEAHGSGKDCNERVVPTDGGRYDVHLGERMRYAVYWDEPPSEVRRCTWFYKGDKDNKYVPYSESFSQVLEETYMLAVTLDEWKKKLESPNREIIVLHNPKLMVHYQPVAGSDEWGSTSTEQGRPRSVKRGVENIPVDIHCGEPLQIDHLVFVVHGIGPACDLRFRSIVQCVNDFRSVSLNLLQTHFKKAQENQQIGRVEFLPVNWHSPLHSTGVDVDLQRITLPSINRLRHFTNDTILDVFFYNSPTYCQTIVDTVASEMNRIYTLFLQRNPEFKGGVSIAGHSLGSLILFDILTNQKDSFGDIDSEKGSLRTVEDQGDVPTLEEDLKKLQLSEFFTVFEKEKVDKEALALCTEKDLQEMGIPLGPRKKILNHFRTRKNSMGVNRPDTSASEVNSSKENGDYLDVGIGQVSVKYPRLNYKPEIFFAFGSPIGMFLTVRGLRRIDPNYKFPTCKGFFNIYHPFDPVAYRIEPMVAPEVEFEPMLIPHHKGRKRMHLELREGFTRMSMDLKNNLLGSLRMAWKSFTRAPYPALQASETTEETEAEPESGSEKSSEVNTEETPVEVKEELPINVGMLNGGQRIDYVLQEKPIESFNEYLFALQSHLCYWESEDTVLLVLKEIYQTQGIFLDQPLQ", "length": 715, "header": "tr|A0A9J7JBA5-1|A0A9J7JBA5_CRIGR Isoform 1 of Phospholipase DDHD2 isoform X4 OS=Cricetulus griseus OX=10029 GN=Ddhd2 PE=3 SV=1 CANONICAL=A0A9J7JBA5-1" }, "locus": {} }, { "isoform_ac": "G3H1I9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBA5/entry#G3H1I9-1", "sequence": { "sequence": "MSSVESSQEHLSDPSPSPNSSSSFELIDMDVSSLYEPVSSHWFYCKVIDSKEIWIPFNSDDSQQLEEAHGSGKDCNERVVPTDGGRYDVHLGERMRYAVYWDEPPSEVRRCTWFYKGDKDNKYVPYSESFSQVLEETYMLAVTLDEWKKKLESPNREIIVLHNPKLMVHYQPVAGSDEWGSTSTEQGRPRSVKRGVENIPVDIHCGEPLQIDHLVFVVHGIGPACDLRFRSIVQCVNDFRSVSLNLLQTHFKKAQENQQIGRVEFLPVNWHSPLHSTGVDVDLQRITLPSINRLRHFTNDTILDVFFYNSPTYCQTIVDTVASEMNRIYTLFLQRNPEFKGGVSIAGHSLGSLILFDILTNQKDSFGDIDSEKGSLRTVEDQGDVPTLEEDLKKLQLSEFFTVFEKEKVDKEALALCTEKDLQEMGIPLGPRKKILNHFRTRKNSMGVNRPDTSASEVNSSKENGDYLDVGIGQVSVKYPRLNYKPEIFFAFGSPIGMFLTVRGLRRIDPNYKFPTCKGFFNIYHPFDPVAYRIEPMVAPEVEFEPMLIPHHKGRKRMHLELREGFTRMSMDLKNNLLGSLRMAWKSFTRAPYPALQASETTEETEAEPESGSEKSSEVNTEETPVEVKEELPINVGMLNGGQRIDYVLQEKPIESFNEYLFALQSHLCYWESEDTVLLVLKEIYQTQGIFLDQPLQ", "length": 697, "header": "tr|G3H1I9-1|A0A9J7JBA5_CRIGR Computationally mapped isoform of Phospholipase DDHD2 isoform X4 OS=Cricetulus griseus OX=10029 GN=Ddhd2 PE=3 SV=1 CANONICAL=A0A9J7JBA5-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 100, "start_aa": "Thr", "end_pos": 100, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr100", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3H1I9", "url": "https://www.uniprot.org/uniprotkb/G3H1I9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3H1I9", "url": "https://www.uniprot.org/uniprotkb/G3H1I9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100772516", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772516", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JBA5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBA5" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JBA5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBA5" } ], "pmid": "" }, { "name": "COPII-coated ER to Golgi transport vesicle", "id": "GO:0030134", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030134", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JBA5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBA5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JBA5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBA5" } ], "pmid": "" }, { "name": "phospholipase activity", "id": "GO:0004620", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004620", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JBA5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBA5" } ], "pmid": "" }, { "name": "triacylglycerol lipase activity", "id": "GO:0004806", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004806", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JBA5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBA5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 317, "end_pos": 319, "annotation": "n_glycosylation_sequon" }, { "start_pos": 37, "end_pos": 39, "annotation": "n_glycosylation_sequon" }, { "start_pos": 477, "end_pos": 479, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JBA5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBA5" }, { "id": "PS51043", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51043" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DDHD", "eco_id": "ECO_0000259", "start_pos": 500, "end_pos": 704, "start_aa": "Leu", "end_aa": "Gln", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7JBA5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBA5" }, { "id": "PS50918", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50918" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "WWE", "eco_id": "ECO_0000259", "start_pos": 46, "end_pos": 128, "start_aa": "Asp", "end_aa": "Arg", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 100 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 317, "end_pos": 319 }, { "start_pos": 37, "end_pos": 39 }, { "start_pos": 477, "end_pos": 479 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7JCH5-1", "uniprot_ac": "A0A9J7JCH5", "uniprot_id": "A0A9J7JCH5_CRIGR", "mass": { "chemical_mass": 69745.0, "monoisotopic_mass": 69745.0 }, "refseq": { "ac": "XP_016830825", "name": "uncharacterized protein C19orf57 homolog isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016830825" }, "gene_names": [ { "name": "CUNH19orf57", "type": "recommended", "evidence": [ { "id": "A0A9J7JCH5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCH5" } ] }, { "name": "CUNH19orf57", "type": "synonym", "evidence": [ { "id": "XP_016830825", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016830825" } ] } ], "protein_names": [ { "name": "Uncharacterized protein C19orf57 homolog isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7JCH5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCH5/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein C19orf57 homolog isoform X1", "type": "synonym", "evidence": [ { "id": "XP_016830825", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016830825" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613865.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_016830825", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016830825" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JCH5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCH5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "CUNH19orf57", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCH5", "locus": {} } ], "crossref": [ { "id": "A0A9J7JCH5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JCH5", "database": "AlphaFoldDB", "categories": [] }, { "id": "100759042", "url": "https://www.ncbi.nlm.nih.gov/gene/100759042", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR031441", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031441", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100759042", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759042", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HETQEPT", "url": "https://omabrowser.org/oma/group/HETQEPT/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FK83", "url": "https://www.orthodb.org/?gene=A0A9J7FK83", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JCH5", "url": "https://www.orthodb.org/?gene=A0A9J7JCH5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JIX6", "url": "https://www.orthodb.org/?gene=A0A9J7JIX6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3HD00", "url": "https://www.orthodb.org/?gene=G3HD00", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14583", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14583", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14583:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14583:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15710", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15710", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_016830825", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016830825", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FK83", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FK83", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FK83-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FK83-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FP72", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FP72", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FP72-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FP72-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GWR4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GWR4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GWR4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GWR4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JCH5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCH5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JCH5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCH5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JIX6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JIX6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JIX6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JIX6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HD00", "url": "https://www.uniprot.org/uniprotkb/G3HD00", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HD00-1", "url": "https://www.uniprot.org/uniprotkb/G3HD00-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGPVEEGNMGTYSAGDSWRVCLLFSDFSGKDKMNKKKQQRDSGTGPGTLGLLHGGDLPLSKPPKNPRLKDPHGSPESSVLMQSQHSRESEDSSESAASVEPGGEEPQPAASSCPVEDTRAVSDLPGSPEELVSLPPSQNSVRRFVPQFAKSKKTITRKAKAWKEVPESCPGSQETWPELGALQAGSQPQKESLKFPFHDARRPEDQAWADGTCSKERTISPDTGSPGNSDFEMQRTTVQDSDSQGRHLSDGDAEGRQADSRAPQEGDAQEGGTGAQQSGEPQEGEDTLYISASAPASDPTVPVPTHKLSSTGAAPSCSSPAHASLTDSVLTDVSLDPSLLQQRAPEVAALPGSLNGQTPGGGCSGTLLGYTPLTEETTAGREEARLEEGSPSDTLTSLIEAAVPGKEEPMVGAGDPGHIEQEMSPAVKTKDSGSDGQLPEEIGTLPLEAQPMSQKVVELSSLNCHQDVESLSLSPDTSSQLEHSHAASDLPQRTKASHSSPGIPIDLTEQQQSAPSTRDEAAWQESSTMELDFLPDSQLQDVLDAPNLKALSEQGFPAGNEPGHGGPVPNPDVIGGSPKAVAKSQPRPPMGTWAQEAFRMQDATDTVRGLVVELSSLNRLIMSTHRDLEAFKRRKAKPLPYLTKGLGSLARGDQGWREL", "length": 659, "header": "tr|A0A9J7JCH5-1|A0A9J7JCH5_CRIGR Isoform 1 of Uncharacterized protein C19orf57 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=CUNH19orf57 PE=4 SV=1 CANONICAL=A0A9J7JCH5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FK83-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCH5/entry#A0A9J7FK83-1", "sequence": { "sequence": "MNKKKQQRDSGTGPGTLGLLHGGDLPLSKPPKNPRLKDPHGSPESSVLMQSQHSRESEDSSESAASVEPGGEEPQPAASSCPVEDTRAVSDLPGSPEELVSLPPSQNSVRRFVPQFAKSKKTITRKAKAWKEVPESCPGSQETWPELGALQAGSQPQKESLKFPFHDARRPEDQAWADGTCSKERTISPDTGSPGNSDFEMQRTTVQDSDSQGRHLSDGDAEGRQADSRAPQEGDAQEGGTGAQQSGEPQEGEDTLYISASAPASDPTVPVPTHKLSSTGAAPSCSSPAHASLTDSVLTDVSLDPSLLQQRAPEVAALPGSLNGQTPGGGCSGTLLGYTPLTEETTAGREEARLEEGSPSDTLTSLIEAAVPGKEEPMVGAGDPGHIEQEMSPAVKTKDSGSDGQLPEEIGTLPLEAQPMSQKVVELSSLNCHQDVESLSLSPDTSSQLEHSHAASDLPQRTKASHSSPGIPIDLTEQQQSAPSTRDEAAWQESSTMELDFLPDSQLQDVLDAPNLKALSEQGFPAGNEPGHGGPVPNPDVIGGSPKAVAKSQPRPPMGTWAQEAFRMQDATDTVRGLVVELSSLNRLIMSTHRDLEAFKRRKAKPLPYLTKGLGSLARGDQGWREL", "length": 627, "header": "tr|A0A9J7FK83-1|A0A9J7JCH5_CRIGR Computationally mapped isoform of Uncharacterized protein C19orf57 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=CUNH19orf57 PE=4 SV=1 CANONICAL=A0A9J7JCH5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FP72-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCH5/entry#A0A9J7FP72-1", "sequence": { "sequence": "MQSQHSRESEDSSESAASVEPGGEEPQPAASSCPVEDTRAVSDLPGSPEELVSLPPSQNSVRRFVPQFAKSKKTITRKAKAWKEVPESCPGSQETWPELGALQAGSQPQKESLKFPFHDARRPEDQAWADGTCSKERTISPDTGSPGNSDFEMQRTTVQDSDSQGRHLSDGDAEGRQADSRAPQEGDAQEGGTGAQQSGEPQEGEDTLYISASAPASDPTVPVPTHKLSSTGAAPSCSSPAHASLTDSVLTDVSLDPSLLQQRAPEVAALPGSLNGQTPGGGCSGTLLGYTPLTEETTAGREEARLEEGSPSDTLTSLIEAAVPGKEEPMVGAGDPGHIEQEMSPAVKTKDSGSDGQLPEEIGTLPLEAQPMSQKVVELSSLNCHQDVESLSLSPDTSSQLEHSHAASDLPQRTKASHSSPGIPIDLTEQQQSAPSTRDEAAWQESSTMELDFLPDSQLQDVLDAPNLKALSEQGFPAGNEPGHGGPVPNPDVIGGSPKAVAKSQPRPPMGTWAQEAFRMQDATDTVRGLVVELSSLNRLIMSTHRDLEAFKRRKAKPLPYLTKGLGSLARGDQGWREL", "length": 579, "header": "tr|A0A9J7FP72-1|A0A9J7JCH5_CRIGR Computationally mapped isoform of Uncharacterized protein C19orf57 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=CUNH19orf57 PE=4 SV=1 CANONICAL=A0A9J7JCH5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GWR4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCH5/entry#A0A9J7GWR4-1", "sequence": { "sequence": "MGPVEEGNMGTYSAGDSWRVCLLFSDFSGKDKMNKKKQQRDSGTGPGTLGLLHGGDLPLSKPPKNPRLKDPHGSPESSVLMQSQHSRESEDSSESAASVEPGGEEPQPAASSCPVEDTRAVSDLPGSPEELVSLPPSQNSVRRFVPQFAKSKKTITRKAKAWKEVPESCPGSQETWPELGALQAGSQPQKESLKFPFHDARRPEDQAWADGTCSKERTISPDTGSPGNSDFEMQRTTVQDSDSQGRHLSDGDAEGRQADSRAPQEGDAQEGGTGAQQSGEPQEGEDTLYISASAPASDPTVPVPTHKLSSTGAAPSCSSPAHASLTDSVLTDVSLDPSLLQQRAPEVAALPGSLNGQTPGGGCSGTLLGYTPLTEETTAGREEARLEEGSPSDTLTSLIEAAVPGKEEPMVGAGDPGHIEQEMSPAVKTKDSGSDGQLPEEIGTLPLEAQPMSQKVVELSSLNCHQDVESLSLSPDTSSQLEHSHAASDLPQRTKASHSSPGIPIDLTEQQQSAPSTRDEAAWQESSTMELDFLPDSQLQDVLDAPNLKALSEQGFPAGNEPGHGGPVPNPDVIGGSPKAVAKSQPSRLIMSTHRDLEAFKRRKAKPLPYLTKGLGSLARGDQGWREL", "length": 628, "header": "tr|A0A9J7GWR4-1|A0A9J7JCH5_CRIGR Computationally mapped isoform of Uncharacterized protein C19orf57 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=CUNH19orf57 PE=4 SV=1 CANONICAL=A0A9J7JCH5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JCH5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCH5/entry#A0A9J7JCH5-1", "sequence": { "sequence": "MGPVEEGNMGTYSAGDSWRVCLLFSDFSGKDKMNKKKQQRDSGTGPGTLGLLHGGDLPLSKPPKNPRLKDPHGSPESSVLMQSQHSRESEDSSESAASVEPGGEEPQPAASSCPVEDTRAVSDLPGSPEELVSLPPSQNSVRRFVPQFAKSKKTITRKAKAWKEVPESCPGSQETWPELGALQAGSQPQKESLKFPFHDARRPEDQAWADGTCSKERTISPDTGSPGNSDFEMQRTTVQDSDSQGRHLSDGDAEGRQADSRAPQEGDAQEGGTGAQQSGEPQEGEDTLYISASAPASDPTVPVPTHKLSSTGAAPSCSSPAHASLTDSVLTDVSLDPSLLQQRAPEVAALPGSLNGQTPGGGCSGTLLGYTPLTEETTAGREEARLEEGSPSDTLTSLIEAAVPGKEEPMVGAGDPGHIEQEMSPAVKTKDSGSDGQLPEEIGTLPLEAQPMSQKVVELSSLNCHQDVESLSLSPDTSSQLEHSHAASDLPQRTKASHSSPGIPIDLTEQQQSAPSTRDEAAWQESSTMELDFLPDSQLQDVLDAPNLKALSEQGFPAGNEPGHGGPVPNPDVIGGSPKAVAKSQPRPPMGTWAQEAFRMQDATDTVRGLVVELSSLNRLIMSTHRDLEAFKRRKAKPLPYLTKGLGSLARGDQGWREL", "length": 659, "header": "tr|A0A9J7JCH5-1|A0A9J7JCH5_CRIGR Isoform 1 of Uncharacterized protein C19orf57 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=CUNH19orf57 PE=4 SV=1 CANONICAL=A0A9J7JCH5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JIX6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCH5/entry#A0A9J7JIX6-1", "sequence": { "sequence": "MGPVEEGNMGTYSAGDSWRVCLLFSDFSGKDKMNKKKQQRDSGGDLPLSKPPKNPRLKDPHGSPESSVLMQSQHSRESEDSSESAASVEPGGEEPQPAASSCPVEDTRAVSDLPGSPEELVSLPPSQNSVRRFVPQFAKSKKTITRKAKAWKEVPESCPGSQETWPELGALQAGSQPQKESLKFPFHDARRPEDQAWADGTCSKERTISPDTGSPGNSDFEMQRTTVQDSDSQGRHLSDGDAEGRQADSRAPQEGDAQEGGTGAQQSGEPQEGEDTLYISASAPASDPTVPVPTHKLSSTGAAPSCSSPAHASLTDSVLTDVSLDPSLLQQRAPEVAALPGSLNGQTPGGGCSGTLLGYTPLTEETTAGREEARLEEGSPSDTLTSLIEAAVPGKEEPMVGAGDPGHIEQEMSPAVKTKDSGSDGQLPEEIGTLPLEAQPMSQKVVELSSLNCHQDVESLSLSPDTSSQLEHSHAASDLPQRTKASHSSPGIPIDLTEQQQSAPSTRDEAAWQESSTMELDFLPDSQLQDVLDAPNLKALSEQGFPAGNEPGHGGPVPNPDVIGGSPKAVAKSQPRPPMGTWAQEAFRMQDATDTVRGLVVELSSLNRLIMSTHRDLEAFKRRKAKPLPYLTKGLGSLARGDQGWREL", "length": 648, "header": "tr|A0A9J7JIX6-1|A0A9J7JCH5_CRIGR Computationally mapped isoform of Uncharacterized protein C19orf57 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=CUNH19orf57 PE=4 SV=1 CANONICAL=A0A9J7JCH5-1" }, "locus": {} }, { "isoform_ac": "G3HD00-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCH5/entry#G3HD00-1", "sequence": { "sequence": "MNKKKQQRDSGGDLPLSKPPKNPRLKDPHGSPESSVLMQSQHSRESEDSSESAASVEPGGEEPQPAASSCPVEDTRAVSDLPGSPEELVSLPPSQNSVRRFVPQFAKSKKTITRKAKAWKEVPESCPGSQETWPELGALQAGSQPQKESLKFPFHDARRPEDQAWADGTCSKERTISPDTGSPGNSDFEMQRTTVQDSDSQGRHLSDGDAEGRQADSRAPQEGDAQEGGTGAQQSGEPQEGEDTLYISASAPASDPTVPVPTHKLSSTGAAPSCSSPAHASLTDSVLTDVSLDPSLLQQRAPEVAALPGSLNGQTPGGGCSGTLLGYTPLTEETTAGREEARLEEGSPSDTLTSLIEAAVPGKEEPMVGAGDPGHIEQEMSPAVKTKDSGSDGQLPEEIGTLPLEAQPMSQKVVELSSLNCHQDVESLSLSPDTSSQLEHSHAASDLPQRTKASHSSPGIPIDLTEQQQSAPSTRDEAAWQESSTMELDFLPDSQLQDVLDAPNLKALSEQGFPAGNEPGHGGPVPNPDVIGGSPKAVAKSQPRPPMGTWAQEAFRMQDATDTVRGLVVELSSLNRLIMSTHRDLEAFKRRKAKPLPYLTKGLGSLARGDQGWREL", "length": 616, "header": "tr|G3HD00-1|A0A9J7JCH5_CRIGR Computationally mapped isoform of Uncharacterized protein C19orf57 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=CUNH19orf57 PE=4 SV=1 CANONICAL=A0A9J7JCH5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HD00", "url": "https://www.uniprot.org/uniprotkb/G3HD00" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HD00", "url": "https://www.uniprot.org/uniprotkb/G3HD00" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100759042", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759042", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8I5Y9Q2-1", "protein_name": "Break repair meiotic recombinase recruitment factor 1", "gene_name": "Brme1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRKWALHLEWGSLPSSHHGKHQNWPSCPHHRPTHLVQLWSCSAMLTAMLSLLESLPLTSLSKPGGSLHPSKPSKNPRLRDPRGSPQRSMTVHSHHSRESEDSSEPAPSVEPAGEEPQPAASSCPVEDTGAASDLPGSPKELVPLPPSQSSVGRFVPQFAKPRKTVTRKTKAWEEDPESCTTSQETTPELGALEAASQPQRESLRFPLHDARRPEDQTQPDGTLSKERTSSLDTGSLENNGFEMATVQDSSSQGRTLSAAAAEGREADSSTPQEGGTQGGEAEAQHSGEPQEGEDILYTSALVPASDPTIPCLETWSVAQDLSVPTHILHSTAAAPSFGSPAGASLMDSVITEVSLDLSVLQHSALEVGSLLGSPDGQIPDGGCSGTLAEETPAGSKETRWKEKSPGDETLANITETAVPVKQEPMVEAGDSSHIAQEMGPAVKTKDPGSDGQLPGDIGMLPLPAQPMDEKVVELSGLTYDQDLEGLSLYPHTPSQLEHTCLASDPPQSSKACHSSPDIPVHPAGKQQPAPSLRDQAAWQESSAMELDFLPDSQIQDALDATNMEQGFPSGNMSDPGWPVPSSYAIGGSPKAVAKPQPRPHVGTWAQEPYRMQDATDTVRGLVVELSSLNRLIMSTHRDLEAFKRRKTKSLPYLTKGLGSLARGDQGWRDL", "length": 670 }, "evidence": [ { "id": "A0A9J7JCH5", "url": "https://omabrowser.org/oma/group/A0A9J7JCH5/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q0VDD7-1", "protein_name": "Break repair meiotic recombinase recruitment factor 1", "gene_name": "BRME1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTKRKKLRTSGEGLCPPKPLKNPRLGDFYGDPQSSMLGCLHHPEEPEGKLGPVPSTQQHGEEPGKAVSSSPDEETGSPCRLLRQPEKEPAPLPPSQNSFGRFVPQFAKSRKTVTRKEEMKDEDRGSGAFSLETIAESSAQSPGCQLLVETLGVPLQEATELGDPTQADSARPEQSSQSPVQAVPGSGDSQPDDPPDRGTGLSASQRASQDHLSEQGADDSKPETDRVPGDGGQKEHLPSIDSEGEKPDRGAPQEGGAQRTAGAGLPGGPQEEGDGVPCTPASAPTSGPAPGLGPASWCLEPGSVAQGSPDPQQTPSRMGREGEGTHSSLGCSSLGMVVIADLSTDPTELEERALEVAGPDGQASAISPASPRRKAADGGHRRALPGCTSLTGETTGESGEAGQDGKPPGDVLVGPTASLALAPGSGESMMGAGDSGHASPDTGPCVNQKQEPGPAQEEAELGGQNLERDLEGFRVSPQASVVLEHREIADDPLQEPGAQQGIPDTTSELAGQRDHLPHSADQGTWADSLAVELDFLLDSQIQDALDASDFEAPPEQLFPSGNKPGPCWPGPSSHANGDPVAVAKAQPRTFVGIQASEASRMEDATNVVRGLIVELSNLNRLIMGTHRDLEAFKRLNYRKTKLGGKAPLPYPSKGPGNIPRGDPPWREL", "length": 668 }, "evidence": [ { "id": "A0A9J7JCH5", "url": "https://omabrowser.org/oma/group/A0A9J7JCH5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6DIA7-1", "protein_name": "Break repair meiotic recombinase recruitment factor 1", "gene_name": "Brme1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MNKKKQRNSGVGLHPSKPSKNPRLRDSQSSMMVHSHYSRESEDSSEPAPSVELGGEEPLHEAFSCPVEDTGAASDLAGSPKELVPLPPSQNSVGKFVPQFAKPRKTVTRKAKAWEEDLEGCTTSQETRPELGALKAASQPQRESLRFPPHDIRPEVQTQPDGTLSKERTISLDNRSLGNNGFEMATVQDSSSPLSDAAAEGREADSRDPQERDAQGGEAGAQHSGEPQEGEDILYTSALAPASEPTWSVAQDLSVPTYTLSSTAAAPSSTSPADASLMDTVITEVSLDPSVLQQSAPQVAKLLGSLDEQIPDGGCIGTLLSSTPLAEETTAGREEARWEERCHGDTLASFTETEPEKQEPVTEAGDSGHIAQEMDPVVKTKDSGSDEQSPGDIGMLPLPAQSMNQMLVELRGLTCDQDLEGLSTPHTSSQLEHTCAASDPPQSTKDCHSSPGIPVHLAAPCPRDQAAWQESSAMELDFLPDSQIQDALDATNMEQGFPSGSMPDLGWPVPSSQSIGGSPKAVTKPQSRSHVETWAQETYRMQDATDTVRGLVVELSGLNRLIMSTHRDLEAFKRRKTKSLPYLTKGLGSLPRGDQSWRDL", "length": 600 }, "evidence": [ { "id": "A0A9J7JCH5", "url": "https://omabrowser.org/oma/group/A0A9J7JCH5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "protein localization to site of double-strand break", "id": "GO:1990166", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990166", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JCH5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCH5" } ], "pmid": "" }, { "name": "female meiosis I", "id": "GO:0007144", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007144", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JCH5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCH5" } ], "pmid": "" }, { "name": "spermatogenesis", "id": "GO:0007283", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007283", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JCH5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCH5" } ], "pmid": "" }, { "name": "double-strand break repair involved in meiotic recombination", "id": "GO:1990918", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990918", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JCH5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCH5" } ], "pmid": "" }, { "name": "male meiosis I", "id": "GO:0007141", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007141", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JCH5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCH5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "damaged DNA binding", "id": "GO:0003684", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003684", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JCH5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCH5" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "site of double-strand break", "id": "GO:0035861", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035861", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JCH5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCH5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7J8G2-1", "uniprot_ac": "A0A9J7J8G2", "uniprot_id": "A0A9J7J8G2_CRIGR", "mass": { "chemical_mass": 44864.0, "monoisotopic_mass": 44864.0 }, "refseq": { "ac": "XP_027255048", "name": "protein OSCP1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027255048" }, "gene_names": [ { "name": "Oscp1", "type": "recommended", "evidence": [ { "id": "A0A9J7J8G2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8G2" } ] }, { "name": "Oscp1", "type": "synonym", "evidence": [ { "id": "XP_027255048", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027255048" } ] } ], "protein_names": [ { "name": "Protein OSCP1 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7J8G2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8G2/entry#names_and_taxonomy" } ] }, { "name": "protein OSCP1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027255048", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027255048" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027255048", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027255048" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J8G2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8G2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Oscp1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8G2", "locus": {} } ], "crossref": [ { "id": "A0A9J7J8G2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7J8G2", "database": "AlphaFoldDB", "categories": [] }, { "id": "100759602", "url": "https://www.ncbi.nlm.nih.gov/gene/100759602", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019332", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019332", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100759602", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759602", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GTMFNKR", "url": "https://omabrowser.org/oma/group/GTMFNKR/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7J8G2", "url": "https://www.orthodb.org/?gene=A0A9J7J8G2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3H9X2", "url": "https://www.orthodb.org/?gene=G3H9X2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21439", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21439", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21439:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21439:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10188", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10188", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027255048", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027255048", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7J8G2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8G2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J8G2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8G2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3H9X2", "url": "https://www.uniprot.org/uniprotkb/G3H9X2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3H9X2-1", "url": "https://www.uniprot.org/uniprotkb/G3H9X2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSVRTLPLLFLNLGGEMLYVLDQRLRAQNIPGDKARKDEWTEVDRKRVLNDIISTMFNRKFMEELFKPQELYSKKALRTVYDRLAHASIMRLNQASMDKLYDLMTMAFKYQVLLCPRPKDVLLVTFNHLDSIKGFIQDSPTILHQVDETFRQLTEIYGNLSAGEFQMIRQTLLIFFQDLHIRVSTFLKDKVQNSNGRFVLPVSGPVPWGTEVPGVIRIFNDKGEEVKKTGFKHGGNYVAAQKEGAFELYGDRVLKLGTNMYSANRPVETHMSATSKNLASKTQENIAPNPLAKEELNFLARLMGGMEIKKTSGPEPGFRLNLFTTDEEEEHAALSRPEELSYEVINIQATQDQQRNEELARIMGEFEITEQPEITEQSTSKGDDLLAMMDRL", "length": 392, "header": "tr|A0A9J7J8G2-1|A0A9J7J8G2_CRIGR Isoform 1 of Protein OSCP1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Oscp1 PE=4 SV=1 CANONICAL=A0A9J7J8G2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7J8G2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8G2/entry#A0A9J7J8G2-1", "sequence": { "sequence": "MSVRTLPLLFLNLGGEMLYVLDQRLRAQNIPGDKARKDEWTEVDRKRVLNDIISTMFNRKFMEELFKPQELYSKKALRTVYDRLAHASIMRLNQASMDKLYDLMTMAFKYQVLLCPRPKDVLLVTFNHLDSIKGFIQDSPTILHQVDETFRQLTEIYGNLSAGEFQMIRQTLLIFFQDLHIRVSTFLKDKVQNSNGRFVLPVSGPVPWGTEVPGVIRIFNDKGEEVKKTGFKHGGNYVAAQKEGAFELYGDRVLKLGTNMYSANRPVETHMSATSKNLASKTQENIAPNPLAKEELNFLARLMGGMEIKKTSGPEPGFRLNLFTTDEEEEHAALSRPEELSYEVINIQATQDQQRNEELARIMGEFEITEQPEITEQSTSKGDDLLAMMDRL", "length": 392, "header": "tr|A0A9J7J8G2-1|A0A9J7J8G2_CRIGR Isoform 1 of Protein OSCP1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Oscp1 PE=4 SV=1 CANONICAL=A0A9J7J8G2-1" }, "locus": {} }, { "isoform_ac": "G3H9X2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8G2/entry#G3H9X2-1", "sequence": { "sequence": "MSVRTLPLLFLNLGGEMLYVLDQRLRAQNIPGDKARKVLNDIISTMFNRKFMEELFKPQELYSKKALRTVYDRLAHASIMRLNQASMDKLYDLMTMAFKYQVLLCPRPKDVLLVTFNHLDSIKGFIQDSPTILHQVDETFRQLTEIYGNLSAGEFQMIRQTLLIFFQDLHIRVSTFLKDKVQNSNGRFVLPVSGPVPWGTEVPGVIRIFNDKGEEVKKTGFKHGGNYVAAQKEGAFELYGDRVLKLGTNMYSANRPVETHMSATSKNLASKTQENIAPNPLAKEELNFLARLMGGMEIKKTSGPEPGFRLNLFTTDEEEEHAALSRPEELSYEVINIQATQDQQRNEELARIMGEFEITEQPEITEQSTSKGDDLLAMMDRL", "length": 382, "header": "tr|G3H9X2-1|A0A9J7J8G2_CRIGR Computationally mapped isoform of Protein OSCP1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Oscp1 PE=4 SV=1 CANONICAL=A0A9J7J8G2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3H9X2", "url": "https://www.uniprot.org/uniprotkb/G3H9X2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3H9X2", "url": "https://www.uniprot.org/uniprotkb/G3H9X2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100759602", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759602", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2L033-1", "protein_name": "Protein OSCP1", "gene_name": "oscp1b", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSTRTLPLLFINLGGEMLYILDQRLRAQNIPADKAKKVMNDIITTMFNKKFLEELFKPQELYSKKALRTVFDRLAHASIMRLNQASMDKLYDLMTMAFKYQVLLCPRPKDILLVSFNHMDAIRDFVKDTPSILSQVDETNKQLIEIYTSLSGGEFQLIRQTLLIFFQDMHIRVSIFLKDKVQNSNGRFVLPTSGPVPFGTQTPGLIRIFSCSGEEVRRTQFRDGGNYHTALREGSFEMYGDRVIKLGTNMYSVSRPVETHMSGTSKNSSQHTKVNTTPNPLAKEELNLLARLMGGLEVQKPPSTDSGFRVNLFATDEEEEEAFISRPDELSYEVINIQATKDKQTNAELAKIMGEFGETGEASPSSSSKGDDLLAMMDGL", "length": 380 }, "evidence": [ { "id": "A0A9J7J8G2", "url": "https://omabrowser.org/oma/group/A0A9J7J8G2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q29S00-1", "protein_name": "Protein OSCP1", "gene_name": "OSCP1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSMRTLPLLFLNLGGEMLYILDQRLRAQNIPGDKARKVMNDIISTMFNQKFMDELFKPQELYSKKALRTVYDRLAHASIMRLNQASMDKLYDLMTMAFKYQVLLCPRPKDVLLVTLNHLDAIKGLIQDSPTILHQVDKTFRQLTDIYGGLSAGEFQLIRQTLLIFFQDLHIRVSIFLKDKVQNSSGRFVLPVSGPVPWGTEVPGLIRTFNNKGKEVKRTEFKHGGSYVAAPKEGSLELYGDRVLKLGTNMYSVNRPVETHMSAASKNLASQTQESIVPNPLAKEELNLLARLIGGMEIQKPSGPEPGFRLNLFTTDEEEEQAALTRPEELSYKVINIQATQDQQTNQELVRIMGEFEITDQSRQSSSKGDDWLAMMDEL", "length": 379 }, "evidence": [ { "id": "A0A9J7J8G2", "url": "https://omabrowser.org/oma/group/A0A9J7J8G2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q4QQS3-1", "protein_name": "Protein OSCP1", "gene_name": "Oscp1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSVRTLPLLFLNLGGEMLYVLDQRLRAQNIPGDKARKVLNDIISTMFNRKFTEELFKPQELYSKKALRTVYDRLAHASIMRLNQASMDKLYDLMTMAFKYQVLLCPRPKDVLLVTFNHLDSIKGFIQDSPTIIHQVDETFRQLTEIYGSLSAGEFQLIRQTLLIFFQDLHIRVSTFLKDKVQNSNGRFVLPVSGPVPWGIEVPGVIRVFNDKGDEVKRMEFRHGGDYVAAHKEGSFELYGDRVLKLGTNMYSASRPVETHMSATSKNSASRAQENIAPNPLAKEELNFLARLIGGMEIKKPSGPEPGFRLNLFTTDEEEEHAALSRPEELSYEVISIQATQDQQRSEELARIMEEFEMTEQPERNTSKGDDLLAMMDRL", "length": 379 }, "evidence": [ { "id": "A0A9J7J8G2", "url": "https://omabrowser.org/oma/group/A0A9J7J8G2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8BHW2-1", "protein_name": "Protein OSCP1", "gene_name": "Oscp1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSVRTLPLLFLNLGGEMLYVLDQRLRAQNIPGDKARKVLNDIISTMFNRKFMDELFKPQELYSKKALRTVYDRLAHASIMRLNQASMDKLYDLMTMAFKYQVLLCPRPKDVLLVTFNHLDAIKGFVQDSPTVIHQVDETFRQLSEVYGKLSEGEFQLIRQTLLNFFQDLHIRVSTFLKDKVQNSNGRFVLPVSGPVPWGTEVPGVIRVFSVKGKEVKKMKFRHGGDYVAAQKEGSFELYGDRVLKLGTNMYSASRPVETHMSATSKNAASRAQENIVPNPLAKEELNFLARLMGGMEIKKPSGPEPGFRLNLFTTDEEEEHAALSRPEELSYEVISIQATQDQQRNEELARIMGEFEITEQLEQNTSKGDDLLAMMDRL", "length": 379 }, "evidence": [ { "id": "A0A9J7J8G2", "url": "https://omabrowser.org/oma/group/A0A9J7J8G2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8WVF1-1", "protein_name": "Protein OSCP1", "gene_name": "OSCP1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSVRTLPLLFLNLGGEMLYILDQRLRAQNIPGDKARKDEWTEVDRKRVLNDIISTMFNRKFMEELFKPQELYSKKALRTVYERLAHASIMKLNQASMDKLYDLMTMAFKYQVLLCPRPKDVLLVTFNHLDTIKGFIRDSPTILQQVDETLRQLTEIYGGLSAGEFQLIRQTLLIFFQDLHIRVSMFLKDKVQNNNGRFVLPVSGPVPWGTEVPGLIRMFNNKGEEVKRIEFKHGGNYVPAPKEGSFELYGDRVLKLGTNMYSVNQPVETHVSGSSKNLASWTQESIAPNPLAKEELNFLARLMGGMEIKKPSGPEPGFRLNLFTTDEEEEQAALTRPEELSYEVINIQATQDQQRSEELARIMGEFEITEQPRLSTSKGDDLLAMMDEL", "length": 389 }, "evidence": [ { "id": "A0A9J7J8G2", "url": "https://omabrowser.org/oma/group/A0A9J7J8G2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J8G2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8G2" } ], "pmid": "" }, { "name": "basal plasma membrane", "id": "GO:0009925", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009925", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J8G2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8G2" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J8G2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8G2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "transmembrane transporter activity", "id": "GO:0022857", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022857", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J8G2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8G2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "xenobiotic detoxification by transmembrane export across the plasma membrane", "id": "GO:1990961", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990961", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J8G2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8G2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 159, "end_pos": 161, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 159, "end_pos": 161 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { 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"uniprot_ac": "A0A9J7JB79", "uniprot_id": "A0A9J7JB79_CRIGR", "mass": { "chemical_mass": 17783.0, "monoisotopic_mass": 17783.0 }, "refseq": { "ac": "XP_007641717", "name": "TSSK6-activating co-chaperone protein isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007641717" }, "gene_names": [ { "name": "Tsacc", "type": "recommended", "evidence": [ { "id": "A0A9J7JB79", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JB79" } ] }, { "name": "Tsacc", "type": "synonym", "evidence": [ { "id": "XP_007641717", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007641717" } ] } ], "protein_names": [ { "name": "TSSK6-activating co-chaperone protein isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007641717", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007641717" }, { "id": "A0A9J7JB79", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JB79/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613923.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007641717", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007641717" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JB79", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JB79" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tsacc", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JB79", "locus": {} } ], "crossref": [ { "id": "A0A9J7JB79", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JB79", "database": "AlphaFoldDB", "categories": [] }, { "id": "100754982", "url": "https://www.ncbi.nlm.nih.gov/gene/100754982", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR031679", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031679", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100754982", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754982", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "KPRECLG", "url": "https://omabrowser.org/oma/group/KPRECLG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7J7Q5", "url": "https://www.orthodb.org/?gene=A0A9J7J7Q5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JB79", "url": "https://www.orthodb.org/?gene=A0A9J7JB79", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3HG82", "url": "https://www.orthodb.org/?gene=G3HG82", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR37368", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37368", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR37368:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR37368:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15836", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15836", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007641717", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007641717", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7J7Q5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7Q5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J7Q5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7Q5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JB79", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JB79", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JB79-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JB79-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HG82", "url": "https://www.uniprot.org/uniprotkb/G3HG82", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HG82-1", "url": "https://www.uniprot.org/uniprotkb/G3HG82-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MYSFFKFYVYENFVYTYVCAPHACLVHEEGTIPVAVEMEQHTNPNDKAKEEDNAVCLCPAKPSPSYINLQANSPSATLLNIQTTKIPSGAGQKPKECLGLLECMYANLQLQTQLAQQQMAILENLQASLSQLEPGKESNNGSLPALCCNMFLNHLPQFHK", "length": 160, "header": "tr|A0A9J7JB79-1|A0A9J7JB79_CRIGR Isoform 1 of TSSK6-activating co-chaperone protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Tsacc PE=4 SV=1 CANONICAL=A0A9J7JB79-1" }, "isoforms": [ { "isoform_ac": "A0A9J7J7Q5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JB79/entry#A0A9J7J7Q5-1", "sequence": { "sequence": "MYSFFKFYVYENFVYTYVCAPHACLVHEEGTIPVAVEMEQHTNPNDKAKEEDNAVCLCPAKPSPSYINLQANSPSATLLNIQTTKIPSGAGQKPKECLGLLEL", "length": 103, "header": "tr|A0A9J7J7Q5-1|A0A9J7J7Q5_CRIGR Computationally mapped isoform of TSSK6-activating co-chaperone protein isoform X3 OS=Cricetulus griseus OX=10029 GN=Tsacc PE=4 SV=1 CANONICAL=A0A9J7JB79-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JB79-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JB79/entry#A0A9J7JB79-1", "sequence": { "sequence": "MYSFFKFYVYENFVYTYVCAPHACLVHEEGTIPVAVEMEQHTNPNDKAKEEDNAVCLCPAKPSPSYINLQANSPSATLLNIQTTKIPSGAGQKPKECLGLLECMYANLQLQTQLAQQQMAILENLQASLSQLEPGKESNNGSLPALCCNMFLNHLPQFHK", "length": 160, "header": "tr|A0A9J7JB79-1|A0A9J7JB79_CRIGR Isoform 1 of TSSK6-activating co-chaperone protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Tsacc PE=4 SV=1 CANONICAL=A0A9J7JB79-1" }, "locus": {} }, { "isoform_ac": "G3HG82-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JB79/entry#G3HG82-1", "sequence": { "sequence": "MEQHTNPNDKAKEEDNAVCLCPAKPSPSYINLQANSPSATLLNIQTTKIPSGAGQKPKECLGLLECMYANLQLQTQLAQQQMAILENLQASLSQLEPGKESNNGSLPALCCNMFLNHLPQFHK", "length": 123, "header": "tr|G3HG82-1|A0A9J7JB79_CRIGR Computationally mapped isoform of TSSK6-activating co-chaperone protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Tsacc PE=4 SV=1 CANONICAL=A0A9J7JB79-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HG82", "url": "https://www.uniprot.org/uniprotkb/G3HG82" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HG82", "url": "https://www.uniprot.org/uniprotkb/G3HG82" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100754982", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754982", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZH74-1", "protein_name": "TSSK6 activating co-chaperone", "gene_name": "Tsacc", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEQHTSNPTKEEAKEEDNVVCLCRAKPSPSYINLQANSPPATFSNTETTMLPSGAGEKPKECLGLLECMSANLQLQTQLAQRQMAILENLQTSLSQLGSGRESKTCSLPGLCCNLLLNHLPQFHK", "length": 125 }, "evidence": [ { "id": "A0A9J7JB79", "url": "https://omabrowser.org/oma/group/A0A9J7JB79/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": 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##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027251861", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027251861" } ] }, { "annotation": "Crystallins are the dominant structural components of the vertebrate eye lens.", "evidence": [ { "database": "UniProtKB", "id": "G3HU53", "url": "https://www.uniprot.org/uniprotkb/G3HU53#function" }, { "database": "UniProtKB", "id": "ARBA00003689", "url": "https://www.uniprot.org/uniprotkb/ARBA00003689#function" }, { "database": "UniProtKB", "id": "A0A9J7J9S4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9S4#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J9S4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9S4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", 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"n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7J7V0-1", "uniprot_ac": "A0A9J7J7V0", "uniprot_id": "A0A9J7J7V0_CRIGR", "mass": { "chemical_mass": 39595.0, "monoisotopic_mass": 39595.0 }, "refseq": { "ac": "XP_016823985", "name": "PIN2/TERF1-interacting telomerase inhibitor 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016823985" }, "gene_names": [ { "name": "Pinx1", "type": "recommended", "evidence": [ { "id": "A0A9J7J7V0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7V0" } ] }, { "name": "Pinx1", "type": "synonym", "evidence": [ { "id": "XP_016823985", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016823985" } ] } ], "protein_names": [ { "name": "PIN2/TERF1-interacting telomerase inhibitor 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_016823985", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016823985" }, { "id": "A0A9J7J7V0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7V0/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613673.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_016823985", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016823985" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J7V0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7V0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Pinx1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7V0", "locus": {} } ], "crossref": [ { "id": "A0A9J7J7V0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7J7V0", "database": "AlphaFoldDB", "categories": [] }, { "id": "100754375", "url": "https://www.ncbi.nlm.nih.gov/gene/100754375", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000467", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000467", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050656", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050656", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100754375", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754375", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PCWDQSS", "url": "https://omabrowser.org/oma/group/PCWDQSS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7EZ26", "url": "https://www.orthodb.org/?gene=A0A9J7EZ26", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7J7V0", "url": "https://www.orthodb.org/?gene=A0A9J7J7V0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3H0L1", "url": "https://www.orthodb.org/?gene=G3H0L1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23149", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23149", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23149:SF27", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23149:SF27", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01585", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01585", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_016823985", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016823985", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7EZ26", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZ26", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EZ26-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZ26-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J7V0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7V0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J7V0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7V0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3H0L1", "url": "https://www.uniprot.org/uniprotkb/G3H0L1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3H0L1-1", "url": "https://www.uniprot.org/uniprotkb/G3H0L1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSMLAEPRRKQKWTVDPRNTAWSNDDSKFGQRMLEKMGWSKGKGLGAQEQGATEHIKVKVKNNNLGLGATNNNEDNWIAHQDDFNQLLAALNTCHSQETADSSDNKEKKSFSLEEKSKNSKNRVHYMKFTKGKDLSSRSETDLDCIFGKRKNQKTAQKEYMLLHQRGKPLCCMLALFGKDGCSTSIADEVDTSMMTTTTSAFTIQEYFAKRMAQLKSKPRASAPEPDISETSDEWKKEKKKTKEAAVTDVENSPQHKAKRHKKKRRAKAEVEPVIKKRDRLELQPGGPSGDECSEASAEAEEDCEQSPSSQGDVLKSKKRKAKKKLQRPGRVEIDTTLEKAPVKKKKKASR", "length": 351, "header": "tr|A0A9J7J7V0-1|A0A9J7J7V0_CRIGR Isoform 1 of PIN2/TERF1-interacting telomerase inhibitor 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Pinx1 PE=4 SV=1 CANONICAL=A0A9J7J7V0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7EZ26-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7V0/entry#A0A9J7EZ26-1", "sequence": { "sequence": "MLEKMGWSKGKGLGAQEQGATEHIKVKVKNNNLGLGATNNNEDNWIAHQDDFNQLLAALNTCHSQETADSSDNKEKKSFSLEEKSKNSKNRVHYMKFTKGKDLSSRSETDLDCIFGKRKNQKTAQKEYMLLHQRGKPLCCMLALFGKDGCSTSIADEVDTSMMTTTTSAFTIQEYFAKRMAQLKSKPRASAPEPDISETSDEWKKEKKKTKEAAVTDVENSPQHKAKRHKKKRRAKAEVEPVIKKRDRLELQPGGPSGDECSEASAEAEEDCEQSPSSQGDVLKSKKRKAKKKLQRPGRVEIDTTLEKAPVKKKKKASR", "length": 319, "header": "tr|A0A9J7EZ26-1|A0A9J7J7V0_CRIGR Computationally mapped isoform of PIN2/TERF1-interacting telomerase inhibitor 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Pinx1 PE=4 SV=1 CANONICAL=A0A9J7J7V0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J7V0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7V0/entry#A0A9J7J7V0-1", "sequence": { "sequence": "MSMLAEPRRKQKWTVDPRNTAWSNDDSKFGQRMLEKMGWSKGKGLGAQEQGATEHIKVKVKNNNLGLGATNNNEDNWIAHQDDFNQLLAALNTCHSQETADSSDNKEKKSFSLEEKSKNSKNRVHYMKFTKGKDLSSRSETDLDCIFGKRKNQKTAQKEYMLLHQRGKPLCCMLALFGKDGCSTSIADEVDTSMMTTTTSAFTIQEYFAKRMAQLKSKPRASAPEPDISETSDEWKKEKKKTKEAAVTDVENSPQHKAKRHKKKRRAKAEVEPVIKKRDRLELQPGGPSGDECSEASAEAEEDCEQSPSSQGDVLKSKKRKAKKKLQRPGRVEIDTTLEKAPVKKKKKASR", "length": 351, "header": "tr|A0A9J7J7V0-1|A0A9J7J7V0_CRIGR Isoform 1 of PIN2/TERF1-interacting telomerase inhibitor 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Pinx1 PE=4 SV=1 CANONICAL=A0A9J7J7V0-1" }, "locus": {} }, { "isoform_ac": "G3H0L1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7V0/entry#G3H0L1-1", "sequence": { "sequence": "MSMLAEPRRKQKWTVDPRNTAWSNDDSKFGQRMLEKMGWSKGKGLGAQEQGATEHIKVKVKNNNLGLGATNNNEDNWIAHQDDFNQLLAALNTCHSQETADSSDNKEKKSFSLEEKSKNSKNRVHYMKFTKGKDLSSRSETDLDCIFGKRKNQKTAQDGCSTSIADEVDTSMMTTTTSAFTIQEYFAKRMAQLKSKPRASAPEPDISETSDEWKKEKKKTKEAAVTDVENSPQHKAKRHKKKRRAKAEVEPVIKKRDRLELQPGGPSGDECSEASAEAEEDCEQSPSSQGDVLKSKKRKAKKKLQRPGRVEIDTTLEKAPVKKKKKASR", "length": 329, "header": "tr|G3H0L1-1|A0A9J7J7V0_CRIGR Computationally mapped isoform of PIN2/TERF1-interacting telomerase inhibitor 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Pinx1 PE=4 SV=1 CANONICAL=A0A9J7J7V0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3H0L1", "url": "https://www.uniprot.org/uniprotkb/G3H0L1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3H0L1", "url": "https://www.uniprot.org/uniprotkb/G3H0L1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100754375", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754375", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A287AHL8-1", "protein_name": "G-patch domain-containing protein", "gene_name": "PINX1", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEAQDEVGRRKQKWAVDPRNTAWSNDDSKFGQRMLEKMGWSKGKGLGAQEQGATDHIKVQVKNNHLGLGATINNEDNWIAHQDDFNQLLAALNTCHGQETADSSDNKEKKSFSLEEKSKISKNRVHYMKFTKGKDLSSRSKTDLDCIFGKRQKKKTPEETSSPATPEGTETTTTTSAFTIHEYFAKRMAERKNKLQDTAEGPGVSETPLQSKRGKKRKKEAKDKSVENGTQPKAKKKRARAEWQLGDPGRDENSGVSAEDREGSREVLSDQDFPLKPRRRKEKKKLPKPVEAAVAGMLEETPVKKKKKKKDSE", "length": 313 }, "evidence": [ { "id": "A0A9J7J7V0", "url": "https://omabrowser.org/oma/group/A0A9J7J7V0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A4L691-1", "protein_name": "PIN2/TERF1-interacting telomerase inhibitor 1", "gene_name": "Pinx1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSMLAERRRKQKWAVDPRNTAWSNDDSKFGQKMLEKMGWSKGKGLGAQEQGATEHIKVKVKNNHLGLGATNNNEDNWIAHQDDFNQLLAALNTCHGQETADSSDNKEKKSFSLEEKSKISKNRVHYMKFTKGKDLSSRSETDLDCIFGKRRNKKLAQDGCSNSTADEADTSLTTTTTTTSAFTIQEYFAKRMAQLKSKSQAAAPGSDLSETPIEWKKGKKKTKEAAGTDIENSPQHKAKRHKKKKRVEAERGPAAKKRDQVELQPGGPSGDECSDASVEAAEDRVQTPDTQDDVPKPRKRRAKKTLQRPGGVAVDTAPDSAPVKKKKKVSR", "length": 331 }, "evidence": [ { "id": "A0A9J7J7V0", "url": "https://omabrowser.org/oma/group/A0A9J7J7V0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q54XG0-1", "protein_name": "Uncharacterized G-patch domain protein DDB_G0278987", "gene_name": "", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSSDEGETPKMGFGHAMLLKMGWKGKGLGVEEDGRTEIIVNKKKQDKVGVGASISDRVSTSNNWESTNEAYDHILAKLNGVDEITWKKKNNKFVKEEKITFKRTIKKNSKKNKDESDSDSDSDSESESDKKPTKKQKVQSDSDSSCSDSSSSSSSSSSESEKEDKSSSNTTSDESDKESSSDSSDSSESENEKKDKKKIVNNKKGKDSDSSSSSDDSCSSESDSSSSSSSSSSSSDSSSESDSDNKNKNKNKNKNKKSKESDSSSSSSSSESEEEEKKEVAKKSFSVSKTRYQRLLRAKSVKNYSEDDLREILGYRPNQDTRKLKTKE", "length": 328 }, "evidence": [ { "id": "A0A9J7J7V0", "url": "https://omabrowser.org/oma/group/A0A9J7J7V0/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q96BK5-1", "protein_name": "PIN2/TERF1-interacting telomerase inhibitor 1", "gene_name": "PINX1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSMLAERRRKQKWAVDPQNTAWSNDDSKFGQRMLEKMGWSKGKGLGAQEQGATDHIKVQVKNNHLGLGATINNEDNWIAHQDDFNQLLAELNTCHGQETTDSSDKKEKKSFSLEEKSKISKNRVHYMKFTKGKDLSSRSKTDLDCIFGKRQSKKTPEGDASPSTPEENETTTTSAFTIQEYFAKRMAALKNKPQVPVPGSDISETQVERKRGKKRNKEATGKDVESYLQPKAKRHTEGKPERAEAQERVAKKKSAPAEEQLRGPCWDQSSKASAQDAGDHVQPPEGRDFTLKPKKRRGKKKLQKPVEIAEDATLEETLVKKKKKKDSK", "length": 328 }, "evidence": [ { "id": "A0A9J7J7V0", "url": "https://omabrowser.org/oma/group/A0A9J7J7V0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9CZX5-1", "protein_name": "PIN2/TERF1-interacting telomerase inhibitor 1", "gene_name": "Pinx1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSMLAERRRKQKWTVDPRNTAWSNDDSKFGQKMLEKMGWSKGKGLGAQEQGATEHIKVKVKNNHLGLGATNNNEDNWIAHQDDFNQLLAALNTCHGQETADSSDKKEKKSFSLEEKSKISKNRVHYMKFTKGKDLSSRSETDLDCIFGKRRNKKLAQDGCSNSSADEVNTSLTTTTTTTSAFTIQEYFAKRMAQLKNKPQASAPGSDLSETPVERKKGKKKNKEAADTDVENSPQHKAKRHKKKKRVEAERGPVAKKRDRAELQPGGPSEDECSDASVEAAEDCVQTPDIQDDVPKPKKRKAKKKLQRPEGVEIDATLDRAPVKKKKKKVSR", "length": 332 }, "evidence": [ { "id": "A0A9J7J7V0", "url": "https://omabrowser.org/oma/group/A0A9J7J7V0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 8, "go_terms": [ { "name": "protein localization to nucleolus", "id": "GO:1902570", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1902570", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J7V0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7V0" } ], "pmid": "" }, { "name": "negative regulation of telomere maintenance via telomerase", "id": "GO:0032211", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032211", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J7V0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7V0" } ], "pmid": "" }, { "name": "protein localization to chromosome, telomeric region", "id": "GO:0070198", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070198", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J7V0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7V0" } ], "pmid": "" }, { "name": "regulation of protein stability", "id": "GO:0031647", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031647", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J7V0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7V0" } ], "pmid": "" }, { "name": "negative regulation of protein ubiquitination", "id": "GO:0031397", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031397", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J7V0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7V0" } ], "pmid": "" }, { "name": "mitotic metaphase chromosome alignment", "id": "GO:0007080", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007080", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J7V0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7V0" } ], "pmid": "" }, { "name": "negative regulation of G2/M transition of mitotic cell cycle", "id": "GO:0010972", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010972", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J7V0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7V0" } ], "pmid": "" }, { "name": "positive regulation of protein localization to nucleolus", "id": "GO:1904751", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1904751", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J7V0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7V0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 6, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J7V0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7V0" } ], "pmid": "" }, { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J7V0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7V0" } ], "pmid": "" }, { "name": "spindle", "id": "GO:0005819", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005819", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J7V0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7V0" } ], "pmid": "" }, { "name": "kinetochore", "id": "GO:0000776", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000776", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J7V0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7V0" } ], "pmid": "" }, { "name": "nuclear chromosome", "id": "GO:0000228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000228", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J7V0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7V0" } ], "pmid": "" }, { "name": "chromosome, telomeric region", "id": "GO:0000781", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000781", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J7V0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7V0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "protein-containing complex binding", "id": "GO:0044877", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044877", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J7V0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7V0" } ], "pmid": "" }, { "name": "telomerase RNA binding", "id": "GO:0070034", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070034", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J7V0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7V0" } ], "pmid": "" }, { "name": "telomerase inhibitor activity", "id": "GO:0010521", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010521", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J7V0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7V0" } ], "pmid": "" }, { "name": "nucleic acid binding", "id": "GO:0003676", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003676", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J7V0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7V0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7J7V0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7V0" }, { "id": "PS50174", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50174" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-patch", "eco_id": "ECO_0000259", "start_pos": 26, "end_pos": 72, "start_aa": "Asp", "end_aa": "Asn", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { 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{ "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7J4X4-1", "uniprot_ac": "A0A9J7J4X4", "uniprot_id": "A0A9J7J4X4_CRIGR", "mass": { "chemical_mass": 185773.0, "monoisotopic_mass": 185773.0 }, "refseq": { "ac": "XP_007641710", "name": "ras GTPase-activating-like protein IQGAP3 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007641710" }, "gene_names": [ { "name": "Iqgap3", "type": "recommended", "evidence": [ { "id": "A0A9J7J4X4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J4X4" } ] }, { "name": "Iqgap3", "type": "synonym", "evidence": [ { "id": "XP_007641710", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007641710" } ] } ], "protein_names": [ { "name": "Ras GTPase-activating-like protein IQGAP3 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7J4X4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J4X4/entry#names_and_taxonomy" } ] }, { "name": "ras GTPase-activating-like protein IQGAP3 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007641710", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007641710" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613923.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007641710", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007641710" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J4X4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J4X4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Iqgap3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J4X4", "locus": {} } ], "crossref": [ { "id": "cd00201", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00201", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100754110", "url": "https://www.ncbi.nlm.nih.gov/gene/100754110", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000593", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000593", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001202", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001202", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001715", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001715", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001936", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001936", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008936", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008936", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023152", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023152", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036872", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036872", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100754110", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754110", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "RELMCPE", "url": "https://omabrowser.org/oma/group/RELMCPE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7J4X4", "url": "https://www.orthodb.org/?gene=A0A9J7J4X4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3HG79", "url": "https://www.orthodb.org/?gene=G3HG79", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14149", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14149", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14149:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14149:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00307", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00307", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00612", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00612", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00616", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00616", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03836", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03836", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007641710", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007641710", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7J4X4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J4X4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J4X4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J4X4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J9Q2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9Q2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J9Q2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9Q2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HG79", "url": "https://www.uniprot.org/uniprotkb/G3HG79", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HG79-1", "url": "https://www.uniprot.org/uniprotkb/G3HG79-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEPCSASRARTAYERLTAEEMDEQRRQNVAYQYLCRLEEAKRWMEVCLKEELPSPVELEESLRNGVLLAKLGHCFAPSVVPLKKIYDMGQLQYQATGLHFRHTDNINFWLSAVAHIGLPSIFLPETTDIYDKKNMPRVIYCIHALSLFLFRLGLAPQIRDLYGKVKFTAEELSNIASELAKYGLQLPAFSKIGGILANEFSADEAAVHAAVLAINDAVERGVVEDTLAALQNPNALLGNLREPLAAVYQELLALAKMEKAANARNHDDGQEQDIYESCLTQAEIQGHINLANVQGALEVVDDALERQSPGALLEALQDPVLALQGVRRDVAGWYLEQLSSDREQKSQELGFMKLLEKEEIQAGVAAANEKSDQEQAMLQAVWRINRAIQREVATDTVKELMCPEAQLPQVYPFASAVYQQELSVLQKQQQRELSQEELFVAVEMLSAVVLINRALEARDACAFWDNLVNPATGLAQVEEENAQRYFDALVKVQRLQGMDRAFLSWNDLQAAVCQVNAQVQEETDQVLAISLINEALDQGYPEKTLSALLLPAAGLEDVSLHVAPRYHLLLVAAKRKKAKVTGDPGAVLWLEEIRQGVARANEDTDTAQKIALGVAAINQAIKEGKAAQTERVLRNPNVALRGIVPDCADSYQQALEGTAARKRRPGDTAAFWVQHDMKDGTAYYFHLQTFQGTWEHPPSCHLNTAHLTWEEIQSVITKVTSAHDRQLLWKANVGLVVQLQARLRGFLVRQKFAECSHFIRTLLPAVIKIQAHWRGYRQRKIYQERLQYFKANLDAIIKIQAWARMWAARRQYLRRLRYFQKNVDSVVKIQAFFRARKARDDYRMLVHARHPPLCVVRKFVHLLNQSQEDFSAEAELLKLQEEVVRKIRSNQQLEQDLNLMDIKIGLLVKNRITLQEVVSHCKKLTKKNKEQLSDMMVLDKQKGLKSLSREKRQKLEAYQHLFYLLQTQPIYLAKLIFQMPQNRTTKFMEAVIFSLYNYASNRREAYLLLQLFKTALQEEIKSKVEQPQDVVTGNPTVVRLVVRFYRNGRGQSALQEILGKVVQEVLEDRSVSIHTDPVHIYKSWINQVEAQTGQRSCLPYDVTPEQALSHSEVQRRLDISLRNLLAMTDKFFVAINSSVDHIPYGMRYMAKVLQTTLEKKFPGASESEIYKVVGNLLYYRFLNPAVVAPDAFDIVSMAAGSTMATPQRHALGALAQLLQHAAAGKIFSGESQHLQVLNSYLEDMHLKFRKFIYRACQVPEPEERFAIDEYSDMVAVAKPMVYITVGELISTHRLLLEHQDQLAPDHQDPLHQLLEDLGEPPTIADLIGENVATDGQVDLSRLEVSLTLTNKLEGLESDTDDTSNQSLLLSTKQMLADLIQFHPGDSLEEILSFSAPREQEEAHHRLMCWRQACDTQKPESLRRHHSMMAHSLLPLAEKQRRVQRNLRRLQGLGLVRAGDCYQGLVDELAKDICNQRRHRQRRKAEMLRLRATLQGLDAKTTFYEEQGDYYNQYIQACLDHLAPKANRSSGKGKKQPCLHYTAAQLLEKGVLVEIEDLPVSHFRNVIFDITPGDEAGRFAVNAKFLGVDMEQFQLHYQDLLQLQYEGVAVMKLFNKAKVNVNLLIFLLNKKFLRK", "length": 1634, "header": "tr|A0A9J7J4X4-1|A0A9J7J4X4_CRIGR Isoform 1 of Ras GTPase-activating-like protein IQGAP3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Iqgap3 PE=4 SV=1 CANONICAL=A0A9J7J4X4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7J4X4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J4X4/entry#A0A9J7J4X4-1", "sequence": { "sequence": "MEPCSASRARTAYERLTAEEMDEQRRQNVAYQYLCRLEEAKRWMEVCLKEELPSPVELEESLRNGVLLAKLGHCFAPSVVPLKKIYDMGQLQYQATGLHFRHTDNINFWLSAVAHIGLPSIFLPETTDIYDKKNMPRVIYCIHALSLFLFRLGLAPQIRDLYGKVKFTAEELSNIASELAKYGLQLPAFSKIGGILANEFSADEAAVHAAVLAINDAVERGVVEDTLAALQNPNALLGNLREPLAAVYQELLALAKMEKAANARNHDDGQEQDIYESCLTQAEIQGHINLANVQGALEVVDDALERQSPGALLEALQDPVLALQGVRRDVAGWYLEQLSSDREQKSQELGFMKLLEKEEIQAGVAAANEKSDQEQAMLQAVWRINRAIQREVATDTVKELMCPEAQLPQVYPFASAVYQQELSVLQKQQQRELSQEELFVAVEMLSAVVLINRALEARDACAFWDNLVNPATGLAQVEEENAQRYFDALVKVQRLQGMDRAFLSWNDLQAAVCQVNAQVQEETDQVLAISLINEALDQGYPEKTLSALLLPAAGLEDVSLHVAPRYHLLLVAAKRKKAKVTGDPGAVLWLEEIRQGVARANEDTDTAQKIALGVAAINQAIKEGKAAQTERVLRNPNVALRGIVPDCADSYQQALEGTAARKRRPGDTAAFWVQHDMKDGTAYYFHLQTFQGTWEHPPSCHLNTAHLTWEEIQSVITKVTSAHDRQLLWKANVGLVVQLQARLRGFLVRQKFAECSHFIRTLLPAVIKIQAHWRGYRQRKIYQERLQYFKANLDAIIKIQAWARMWAARRQYLRRLRYFQKNVDSVVKIQAFFRARKARDDYRMLVHARHPPLCVVRKFVHLLNQSQEDFSAEAELLKLQEEVVRKIRSNQQLEQDLNLMDIKIGLLVKNRITLQEVVSHCKKLTKKNKEQLSDMMVLDKQKGLKSLSREKRQKLEAYQHLFYLLQTQPIYLAKLIFQMPQNRTTKFMEAVIFSLYNYASNRREAYLLLQLFKTALQEEIKSKVEQPQDVVTGNPTVVRLVVRFYRNGRGQSALQEILGKVVQEVLEDRSVSIHTDPVHIYKSWINQVEAQTGQRSCLPYDVTPEQALSHSEVQRRLDISLRNLLAMTDKFFVAINSSVDHIPYGMRYMAKVLQTTLEKKFPGASESEIYKVVGNLLYYRFLNPAVVAPDAFDIVSMAAGSTMATPQRHALGALAQLLQHAAAGKIFSGESQHLQVLNSYLEDMHLKFRKFIYRACQVPEPEERFAIDEYSDMVAVAKPMVYITVGELISTHRLLLEHQDQLAPDHQDPLHQLLEDLGEPPTIADLIGENVATDGQVDLSRLEVSLTLTNKLEGLESDTDDTSNQSLLLSTKQMLADLIQFHPGDSLEEILSFSAPREQEEAHHRLMCWRQACDTQKPESLRRHHSMMAHSLLPLAEKQRRVQRNLRRLQGLGLVRAGDCYQGLVDELAKDICNQRRHRQRRKAEMLRLRATLQGLDAKTTFYEEQGDYYNQYIQACLDHLAPKANRSSGKGKKQPCLHYTAAQLLEKGVLVEIEDLPVSHFRNVIFDITPGDEAGRFAVNAKFLGVDMEQFQLHYQDLLQLQYEGVAVMKLFNKAKVNVNLLIFLLNKKFLRK", "length": 1634, "header": "tr|A0A9J7J4X4-1|A0A9J7J4X4_CRIGR Isoform 1 of Ras GTPase-activating-like protein IQGAP3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Iqgap3 PE=4 SV=1 CANONICAL=A0A9J7J4X4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J9Q2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J4X4/entry#A0A9J7J9Q2-1", "sequence": { "sequence": "MEPCSASRARTAYERLTAEEMDEQRRQNVAYQYLCRLEEAKRWMEVCLKEELPSPVELEESLRNGVLLAKLGHCFAPSVVPLKKIYDMGQLQYQATGLHFRHTDNINFWLSAVAHIGLPSIFLPETTDIYDKKNMPRVIYCIHALSLFLFRLGLAPQIRDLYGKVKFTAEELSNIASELAKYGLQLPAFSKIGGILANEFSADEAAVHAAVLAINDAVERGVVEDTLAALQNPNALLGNLREPLAAVYQELLALAKMEKAANARNHDDGQEQDIYESCLTQAEIQGHINLANVQGALEVVDDALERQSPGALLEALQDPVLALQGVRRDVAGWYLEQLSSDREQKSQELGFMKLLEKEEIQAGVAAANEKSDQEQAMLQAVWRINRAIQREVATDTVKELMCPEAQLPQVYPFASAVYQQELSVLQKQQQRELSQEELFVAVEMLSAVVLINRALEARDACAFWDNLVNPATGLAQVEEENAQRYFDALVKVQRLQGMDRAFLSWNDLQAAVCQVNAQVQEETDQVLAISLINEALDQGYPEKTLSALLLPAAGLEDVSLHVAPRYHLLLVAAKRKKAKVTGDPGAVLWLEEIRQGVARANEDTDTAQKIALGVAAINQAIKEGKAAQTERVLRNPNVALRGIVPDCADSYQQALEGTAARKRRPGDTAAFWVQHDMKDGTAYYFHLQTFQGTWEHPPSCHLNTAHLTWEEIQSVITKVTSAHDRQLLWKANVGLVVQLQARLRGFLVRQKFAECSHFIRTLLPAVIKIQAHWRGYRQRKIYQERLQYFKANLDAIIKIQAWARMWAARRQYLRRLRYFQKNVDSVVKIQAFFRARKARDDYRMLVHARHPPLCVVRKFVHLLNQSQEDFSAEAELLKLQEEVVRKIRSNQQLEQDLNLMDIKIGLLVKNRITLQEVVSHCKKLTKKNKEQLSDMMVLDKQKGLKSLSREKRQKLEAYQHLFYLLQTQPIYLAKLIFQMPQNRTTKFMEAVIFSLYNYASNRREAYLLLQLFKTALQEEIKSKVEQPQDVVTGNPTVVRLVVRFYRNGRGQSALQEILGKVVQEVLEDRSVSIHTDPVHIYKSWINQVEAQTGQRSCLPYDVTPEQALSHSEVQRRLDISLRNLLAMTDKFFVAINSSVDHIPYGMRYMAKVLQTTLEKKFPGASESEIYKVVGNLLYYRFLNPAVVAPDAFDIVSMAAGSTMATPQRHALGALAQLLQHAAAGKIFSGESQHLQVLNSYLEDMHLKFRKFIYRACQVPEPEERFAIDEYSDMVAVAKPMVYITVGELISTHRLLLEHQDQLAPDHQDPLHQLLEDLGEPPTIADLIGENVATDGQVDLSRLEVSLTLTNKLEGLESDTDDTSNQSLLLSTKQMLADLIQFHPGDSLEEILSFSAPREQKLGWEAGTFPENSQGCAQDSEAGVCPGLK", "length": 1428, "header": "tr|A0A9J7J9Q2-1|A0A9J7J9Q2_CRIGR Computationally mapped isoform of Ras GTPase-activating-like protein IQGAP3 isoform X3 OS=Cricetulus griseus OX=10029 GN=Iqgap3 PE=4 SV=1 CANONICAL=A0A9J7J4X4-1" }, "locus": {} }, { "isoform_ac": "G3HG79-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J4X4/entry#G3HG79-1", "sequence": { "sequence": "MEPCSASRARTAYERLTAEEMDEQRRQNVAYQYLCRLEEAKRWMEVCLKEELPSPVELEESLRNGVLLAKLGHCFAPSVVPLKKIYDMGQLQYQATGLHFRHTDNINFWLSAVAHIGLPSIFLPETTDIYDKKNMPRVIYCIHALSLFLFRLGLAPQIRDLYGKVKFTAEELSNIASELAKYGLQLPAFSKIGGILANEFSADEAAVHAAVLAINDAVERGVVEDTLAALQNPNALLGNLREPLAAVYQELLALAKMEKAANARNHDDGQEQDIYESCLTQAEIQGHINLANVQGALEVVDDALERQSPGALLEALQDPVLALQGVRRDVAGWYLEQLSSDREQKSQELGFMKLLEKEEIQAGVAAANEKSDQEQAMLQAVWRINRAIQREVATDTVKELMCPEAQLPQVYPFASAVYQQELSVLQKQQQRELSQEELFVAVEMLSAVVLINRALEARDACAFWDNLVNPATGLAQVEEENAQRYFDALVKVQRLQGMDRAFLSWNDLQAAVCQVNAQVQEETDQVLAISLINEALDQGYPEKTLSALLLPAAGLEDVSLHVAPRYHLLLVAAKRKKAKVTGDPGAVLWLEEIRQGVARANEDTDTAQKIALGVAAINQAIKEGKAAQTERVLRNPNVALRGIVPDCADSYQQALEGTAARKRRPGDTAAFWVQHDMKDGTAYYFHLQTFQGTWEHPPSCHLNTAHLTWEEIQSVITKVTSAHDRQLLWKANVGLVVQLQARLRGFLVRQKFAECSHFIRTLLPAVIKIQAHWRGYRQRKIYQERLQYFKANLDAIIKIQAWARMWAARRQYLRRLRYFQKNVDSVVKIQAFFRARKARDDYRMLVHARHPPLCVVRKFVHLLNQSQEDFSAEAELLKLQEEVVRKIRSNQQLEQDLNLMDIKIGLLVKNRITLQEVVSHCKKLTKKNKEQLSDMMVLDKQKGLKSLSREKRQKLEAYQHLFYLLQTQPIYLAKLIFQMPQNRTTKFMEAVIFSLYNYASNRREAYLLLQLFKTALQEEIKSKVEQPQDVVTGNPTVVRLVVRFYRNGRGQSALQEILGKVVQEVLEDRSVSIHTDPVHIYKSWINQVEAQTGQRSCLPYDVTPEQALSHSEVQRRLDISLRNLLAMTDKFFVAINSSVDHIPYGMRYMAKVLQTTLEKKFPGASESEIYKVVGNLLYYRFLNPAVVAPDAFDIVSMAAGSTMATPQRHALGALAQLLQHAAAGKIFSGESQHLQVLNSYLEDMHLKFRKFIYRACQVPEPEERFAIDEYSDMVAVAKPMVYITVGELISTHRLLLEHQDQLAPDHQDPLHQLLEDLGEPPTIADLIGENVATDGQVDLSRLEVSLTLTNKLEGLESDTDDTSNQSLLLSTKQMLADLIQFHPGDSLEEILSFSAPREQEEAHHRLMCWRQACDTQKPESLRRHHSMMAHSLLPLAEKQRRVQRNLRRLQGLGLVRAGDCYQGLVDELAKDICNQRRHRQRRKAEMLRLRATLQGLDAKTTFYEEQGDYYNQYIQACLDHLAPKAKSSGKGKKQPCLHYTAAQLLEKGVLVEIEDLPVSHFRNVIFDITPGDEAGRFAVNAKFLGVDMEQFQLHYQDLLQLQYEGVAVMKLFNKAKVNVNLLIFLLNKKFLRK", "length": 1633, "header": "tr|G3HG79-1|A0A9J7J4X4_CRIGR Computationally mapped isoform of Ras GTPase-activating-like protein IQGAP3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Iqgap3 PE=4 SV=1 CANONICAL=A0A9J7J4X4-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1284, "start_aa": "Thr", "end_pos": 1284, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1284", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HG79", "url": "https://www.uniprot.org/uniprotkb/G3HG79" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HG79", "url": "https://www.uniprot.org/uniprotkb/G3HG79" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100754110", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754110", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZCS4-1", "protein_name": "IQ motif containing GTPase activating protein 3", "gene_name": "Iqgap3", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MESCTAGQARTAYDRLTAEEMDEQRRQNVAYQYLCRLEEAKRWMEVCLKEELPSPVELEESLRNGVLLAKLGHCFAPSVVPLKKIYDMEQLRYQATGLHFRHTDNINFWLSAVAHIGLPSTFLPETTDIYDKKNMPRVIYCIHALSLFLFRLGLAPQIHDLYGKVKFTAEELSNIASELAKYGLQLPAFSKIGGILANEFSADEAAVHAAILAINDAVERGVVEDTLVALQNPNALLGNLREPLAAVYQELLALAKMEKAANARNHDDGQDQDIYESCLTQAEIQGHINLANVQGALEVVDDALERQSPEALLEALRDPVLALQGVRQAFADWYLEQLTSDREQKSQELGLVRLLEKEEIQAGVAAANEKGDQEQAMLRAVWKINKAIQRGVAADTVKELMCPEAQLPQVYPFASAVYQQELALLQKQQQGELDQEELFVAVEMLSAVVLINRALEAGDACTFWDNLVNPATGLAQVEEENAQRYFDALVKVQQLRGTHRGFLSWNDLQAAVSQVNAQVQEETDQVLAISLINEALDQGCPEKTLSALLLPAAGLEDVSLPVAPRYHHLLVAAKRQKAQKTGDPGAVLWLEEIRQGVARANEDTNTAQRIALGVAAINQAIKEGKAAQTERVLRNPNVALRGIVPDCAKSYQQALEGAAAKKHRPGDTAFWVPRDMKDGTAYYFHLQTFQGTWERPPSRHLNASHLTWEEIQSVITKVTAAHDRQLLWKANVGFVIKLQARLRGFLVRQKFAESSHFLRTLLPAVIKIQAHWRGYRQRKTYQERLQYFKANLNAIITIQAWARMWAARRQYLRRLRYFQKNVDSVVKIQAFFRARKARDDYRMLVHARHPPLSVVRKFAHLLNQSQEDFSAEAELLRLQEEVVRKIRSNQQLEQDLNLMDIKIGLLVKNRITLQEVVSHCKKLTKKNKEQLSDMMILDKQKGLKSLSREKRQKLEAYQHLFYLLQTQPIYLAKLIFQMPQNKTTKFMEGVIFSLYNYASNRREAYLLLQLFRTALQEEIKSKVEQPQDVVTGNPTVVRLVVRFYRNGRGQSALQEILGKVIQDVLEDRSVSIHTDPVHIYKSWINQVEAQTGQRSHLPYDVTPEQALSHSEVQRRLDISLRNLLAMTEKFFVAISSSVDHIPYGIRYMAKVLKTTLETKFPNATERDIYKVVGNLLYYRFLNPAVVAPDAFDIVAMAAGSSLAAPQRHALGAVAQLLQHAAAGKVFSGESRHLRILNGYLEDLHHKFRKFICRACRVPEPEERFAIDEYSDMVAVAKPMVYITVGELIGTHRLLLEHQDQLAPGHQDPLHQLLEDLGEPPTITDLIGDHVATDGHEDLSRLEVSLTLTNKFEGLETDADHNSTQSLLLSTKQMLADLIQFHPGDSLEEILTSSAPREHEEAHHRLMCWRQACDTQKPEPLQRRHSLMAHSLLPLAEKQQRVLRNLRRLQGLGLVRANDCYQGLVDELAKDICNQRRHRQRRKAEMLRLRATLQGLDAKTIFYEEQGDYYNQYTQACLDHLAPNPRSSGKGKKQPSLHYTAAQLLEKGVLVEIEDLPVSHFRNVIFDITPGDEAGRFAVNAKFLGVDMEKFQLHYQDLLQLQYEGVAVMKLFNKAKVNVNLLIFLLNKKFLRK", "length": 1632 }, "evidence": [ { "id": "A0A9J7J4X4", "url": "https://omabrowser.org/oma/group/A0A9J7J4X4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F8VQ29-1", "protein_name": "IQ motif containing GTPase activating protein 3", "gene_name": "Iqgap3", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEPCAAGRARTAYERLTAEEMDEQRRQNVAYQYLCRLEEAKRWMEVCLKEELPSPVELEESLRNGVLLAKLGHCFAPSVVPLKKIYDVEQLRYQATGLHFRHTDNINFWLSAVAHIGLPSIFLPETTDIYDKKNMPRVIYCIHALSLFLFRLGLAPQIHDLYGKVKFTAEELGNIASELAKYGLQLPAFSKIGGILANEFSADEAAVHAAILAINDAVERGVVEDTLVTLQNPNALLGNLREPLAAVYQELLALAKMEKAANARNHDDGQEQDIYESCLTQAEIQGHINLANVQGALEVVDDALERQNPGALLEALHDPVLALQGVRGTFADWYLEQLTSDREQKSQELGLVRLLEKEEIQAGVAVANEKGDEEQTMLQAVWRINKAIRRGVAADTVKELMCPEAQLPRVYPFASAFYQQELALLQKQQQGELGQEELFVAVEMLSAVVLINRALEAGDVCAFWDNLVNPATGLAQVEEENAQRYFDALVKVQQFQGTHRGILSWNDLQAAVSQVNEQVQEETDQVLAISLINEALDQGCPEKTLSALLLPAAGLEDVSLHVAPRYHLLLVAAKRQKARVTGDPGAVLWLEEIRQGVARANEDTSTAQRIALGVAAINQAIKEGKAAQTERVLRNPNVALRGIVPDCAKSYQQALEGAAAKKQCPGDTAFWVQHDMKDGTAYYLHLQTFQGTWEHPSGCHLNTSHLTWEEIQSVITKVTAAHDRQLLWKANVGFVIKLQARLRGFLVRQKFAESSHVFRTLLPAVIKIQAHWRGYRQRKAYQERLQHFKANLDAIIKIQAWARMWAARRRYLRRLRYFQKNVDSVVKIQAFFRARKARDDYRMLVHARHPPLCVVRKFAHLLNQSQEDFSAESELLKLQEEVVRKIRSNQQLEQDLNLMDIKIGLLVKNRITLQEVVSHCKKLTKKNKEQLSDMMILDKQKGLKSLSREKRQKLEAYQHLFYLLQTQPIYLAKLIFQMPQNKTTKFMEGVIFSLYNYASNRREAYLLLQLFRTALQEEIKSKVEQPQDVVTGNPTVVRLVVRFYRNGRGQSALQEILGKVIQDVLEDRSVSIHTDPVHIYKSWINQEEAQTGQRSHLPYDVTPEQALSHSEVQRRLDISLRSLLTLTEKFFVAISSSVDHIPYGMRYMAKVLKTTLEKKFPNATERDIYKVVGNLLYYRFLNPAVVAPDAFDIVAMAAGSTLAAPQRHALGAVAQLLQHAAAGQIFSGESRHLRVLNDYLEDLHLKFRKFICRACRVPEPEERFAIDEYSDMVAVAKPMVYITVGELIGTHRLLLEHQDQLAPGHQDPLHQLLEDLGEPPTISDLIGDNIATDGHVDLSRLEVSLTLTNKFEGLETDADHNSNQSLLLSTKQMLADLIQFHPGESLEEILTSSAPREHEEAHRRLMCWRQACDTQKPEPLRRHHSLMAHSLLSLSEKQQRVLRNLRRLQGLGLVRASDCYQGLVDELAKDICNQRRHRQRRKAEMLRLRTTLQGLDAKTIFYEEQGDYYNQYIQACLDHLAPKPKSSGKGKKQPSLHYTAAQLLEKGVLVEIEDLPVSHFRNVIFDITPGDEAGRFFVNAKFLGVDMEKFQLHYQDLLQLQYEGVAVMKLFNKAKVNVNLLIFLLNKKFLRK", "length": 1632 }, "evidence": [ { "id": "A0A9J7J4X4", "url": "https://omabrowser.org/oma/group/A0A9J7J4X4/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q86VI3-1", "protein_name": "Ras GTPase-activating-like protein IQGAP3", "gene_name": "IQGAP3", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MERRAAGPGWAAYERLTAEEMDEQRRQNVAYQYLCRLEEAKRWMEACLKEELPSPVELEESLRNGVLLAKLGHCFAPSVVPLKKIYDVEQLRYQATGLHFRHTDNINFWLSAIAHIGLPSTFFPETTDIYDKKNMPRVVYCIHALSLFLFRLGLAPQIHDLYGKVKFTAEELSNMASELAKYGLQLPAFSKIGGILANELSVDEAAVHAAVLAINEAVERGVVEDTLAALQNPSALLENLREPLAAVYQEMLAQAKMEKAANARNHDDRESQDIYDHYLTQAEIQGNINHVNVHGALEVVDDALERQSPEALLKALQDPALALRGVRRDFADWYLEQLNSDREQKAQELGLVELLEKEEVQAGVAAANTKGDQEQAMLHAVQRINKAIRRRVAADTVKELMCPEAQLPPVYPVASSMYQLELAVLQQQQGELGQEELFVAVEMLSAVVLINRALEARDASGFWSSLVNPATGLAEVEGENAQRYFDALLKLRQERGMGEDFLSWNDLQATVSQVNAQTQEETDRVLAVSLINEALDKGSPEKTLSALLLPAAGLDDVSLPVAPRYHLLLVAAKRQKAQVTGDPGAVLWLEEIRQGVVRANQDTNTAQRMALGVAAINQAIKEGKAAQTERVLRNPAVALRGVVPDCANGYQRALESAMAKKQRPADTAFWVQHDMKDGTAYYFHLQTFQGIWEQPPGCPLNTSHLTREEIQSAVTKVTAAYDRQQLWKANVGFVIQLQARLRGFLVRQKFAEHSHFLRTWLPAVIKIQAHWRGYRQRKIYLEWLQYFKANLDAIIKIQAWARMWAARRQYLRRLHYFQKNVNSIVKIQAFFRARKAQDDYRILVHAPHPPLSVVRRFAHLLNQSQQDFLAEAELLKLQEEVVRKIRSNQQLEQDLNIMDIKIGLLVKNRITLQEVVSHCKKLTKRNKEQLSDMMVLDKQKGLKSLSKEKRQKLEAYQHLFYLLQTQPIYLAKLIFQMPQNKTTKFMEAVIFSLYNYASSRREAYLLLQLFKTALQEEIKSKVEQPQDVVTGNPTVVRLVVRFYRNGRGQSALQEILGKVIQDVLEDKVLSVHTDPVHLYKNWINQTEAQTGQRSHLPYDVTPEQALSHPEVQRRLDIALRNLLAMTDKFLLAITSSVDQIPYGMRYVAKVLKATLAEKFPDATDSEVYKVVGNLLYYRFLNPAVVAPDAFDIVAMAAGGALAAPQRHALGAVAQLLQHAAAGKAFSGQSQHLRVLNDYLEETHLKFRKFIHRACQVPEPEERFAVDEYSDMVAVAKPMVYITVGELVNTHRLLLEHQDCIAPDHQDPLHELLEDLGELPTIPDLIGESIAADGHTDLSKLEVSLTLTNKFEGLEADADDSNTRSLLLSTKQLLADIIQFHPGDTLKEILSLSASREQEAAHKQLMSRRQACTAQTPEPLRRHRSLTAHSLLPLAEKQRRVLRNLRRLEALGLVSARNGYQGLVDELAKDIRNQHRHRHRRKAELVKLQATLQGLSTKTTFYEEQGDYYSQYIRACLDHLAPDSKSSGKGKKQPSLHYTAAQLLEKGVLVEIEDLPASHFRNVIFDITPGDEAGKFEVNAKFLGVDMERFQLHYQDLLQLQYEGVAVMKLFNKAKVNVNLLIFLLNKKFLRK", "length": 1631 }, "evidence": [ { "id": "A0A9J7J4X4", "url": "https://omabrowser.org/oma/group/A0A9J7J4X4/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "GTPase activator activity", "id": "GO:0005096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005096", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J4X4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J4X4" } ], "pmid": "" }, { "name": "calmodulin binding", "id": "GO:0005516", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005516", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J4X4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J4X4" } ], "pmid": "" }, { "name": "actin filament binding", "id": "GO:0051015", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051015", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J4X4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J4X4" } ], "pmid": "" }, { "name": "small GTPase binding", "id": "GO:0031267", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031267", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J4X4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J4X4" } ], "pmid": "" }, { "name": "myosin VI light chain binding", "id": "GO:0070856", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070856", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J4X4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J4X4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "cell-cell junction", "id": "GO:0005911", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005911", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J4X4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J4X4" } ], "pmid": "" }, { "name": "cell cortex", "id": "GO:0005938", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005938", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J4X4", "url": 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} ] }, { "uniprot_canonical_ac": "A0A9J7JAN4-1", "uniprot_ac": "A0A9J7JAN4", "uniprot_id": "A0A9J7JAN4_CRIGR", "mass": { "chemical_mass": 40401.0, "monoisotopic_mass": 40401.0 }, "refseq": { "ac": "XP_007642854", "name": "bombesin receptor-activated protein C6orf89 homolog isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007642854" }, "gene_names": [ { "name": "C1H6orf89", "type": "recommended", "evidence": [ { "id": "A0A9J7JAN4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JAN4" } ] }, { "name": "C1H6orf89", "type": "synonym", "evidence": [ { "id": "XP_007642854", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007642854" } ] } ], "protein_names": [ { "name": "Bombesin receptor-activated protein C6orf89 homolog isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7JAN4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JAN4/entry#names_and_taxonomy" } ] }, { "name": "bombesin receptor-activated protein C6orf89 homolog isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007642854", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007642854" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 243 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614036.1) and transcript sequence (IACG01091918.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007642854", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007642854" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JAN4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JAN4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "C1H6orf89", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JAN4", "locus": {} } ], "crossref": [ { "id": "A0A9J7JAN4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JAN4", "database": "AlphaFoldDB", "categories": [] }, { "id": "100753933", "url": "https://www.ncbi.nlm.nih.gov/gene/100753933", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": 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"MSDFVLEDMDLAANEISIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRGPPQYPLLLAVYKVLLTLGLILFTAYFVIQPFSSLAPEPVLSGAHTWRSFIHHIRLMSLPIAKKYMPENKGTPLQGGEEDKRFTDFDLWSSRGCEQNESEPIPANCTGCAQTLPLKVTLPEDTPKNFERLRPLVIKTGQPLLSSEIQHFSCLYPEATEGFAEGFLTKWWRCFPERWFPFPYPWRRPLNRSQILRELFPVFSQLPFPKDASLNKCFLVPPEPVVGSKMHKVHDLFTVGSGEAMLQLIPPFQCRKHCQSVVMPIEPGDIGYAGAPHWKVYIVARGAQPLVICDGTTLSEL", "length": 356, "header": "tr|A0A9J7JAN4-1|A0A9J7JAN4_CRIGR Isoform 1 of Bombesin receptor-activated protein C6orf89 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=C1H6orf89 PE=4 SV=1 CANONICAL=A0A9J7JAN4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F4H2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JAN4/entry#A0A9J7F4H2-1", "sequence": { "sequence": "MDFVLEDMDLAANEISIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRGPPQYPLLLAVYKVLLTLGLILFTAYFVIQPFSSLAPEPVLSGAHTWRSFIHHIRLMSLPIAKKYMPENKGTPLQGGEEDKRFTDFDLWSSRGCEQNESEPIPANCTGCAQTLPLKVTLPEDTPKNFERLRPLVIKTGQPLLSSEIQHFSCLYPEATEGFAEGFLTKWWRCFPERWFPFPYPWRRPLNRSQILRELFPVFSQLPFPKDASLNKCFLVPPEPVVGSKMHKVHDLFTVGSGEAMLQLIPPFQCRKHCQSVVMPIEPGDIGYAGAPHWKVYIVARGAQPLVICDGTTLSEL", "length": 355, "header": "tr|A0A9J7F4H2-1|A0A9J7JAN4_CRIGR Computationally mapped isoform of Bombesin receptor-activated protein C6orf89 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=C1H6orf89 PE=4 SV=1 CANONICAL=A0A9J7JAN4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JAN4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JAN4/entry#A0A9J7JAN4-1", "sequence": { "sequence": "MSDFVLEDMDLAANEISIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRGPPQYPLLLAVYKVLLTLGLILFTAYFVIQPFSSLAPEPVLSGAHTWRSFIHHIRLMSLPIAKKYMPENKGTPLQGGEEDKRFTDFDLWSSRGCEQNESEPIPANCTGCAQTLPLKVTLPEDTPKNFERLRPLVIKTGQPLLSSEIQHFSCLYPEATEGFAEGFLTKWWRCFPERWFPFPYPWRRPLNRSQILRELFPVFSQLPFPKDASLNKCFLVPPEPVVGSKMHKVHDLFTVGSGEAMLQLIPPFQCRKHCQSVVMPIEPGDIGYAGAPHWKVYIVARGAQPLVICDGTTLSEL", "length": 356, "header": "tr|A0A9J7JAN4-1|A0A9J7JAN4_CRIGR Isoform 1 of Bombesin receptor-activated protein C6orf89 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=C1H6orf89 PE=4 SV=1 CANONICAL=A0A9J7JAN4-1" }, "locus": {} }, { "isoform_ac": "G3HKD1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JAN4/entry#G3HKD1-1", "sequence": { "sequence": "MDLAANEISIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRGPPQYPLLLAVYKVLLTLGLILFTAYFVIQPFSSLAPEPVLSGAHTWRSFIHHIRLMSLPIAKKYMPENKGTPLQGGEEDKRFTDFDLWSSRGCEQNESEPIPANCTGCAQTLPLKVTLPEDTPKNFERLRPLVIKTGQPLLSSEIQHFSCLYPEATEGFAEGFLTKWWRCFPERWFPFPYPWRRPLNRSQILRELFPVFSQLPFPKDASLNKCFLVPPEPVVGSKMHKVHDLFTVGSGEAMLQLIPPFQCRKHCQSVVMPIEPGDIGYAGAPHWKVYIVARGAQPLVICDGTTLSEL", "length": 348, "header": "tr|G3HKD1-1|A0A9J7JAN4_CRIGR Computationally mapped isoform of Bombesin receptor-activated protein C6orf89 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=C1H6orf89 PE=4 SV=1 CANONICAL=A0A9J7JAN4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HKD1", "url": "https://www.uniprot.org/uniprotkb/G3HKD1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HKD1", "url": "https://www.uniprot.org/uniprotkb/G3HKD1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100753933", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753933", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JAN4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JAN4" } ], "pmid": "" }, { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JAN4", "url": 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Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027244972", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244972" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J2Q4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J2Q4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cul7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J2Q4", "locus": {} } ], "crossref": [ { "id": "100771595", "url": "https://www.ncbi.nlm.nih.gov/gene/100771595", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004939", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004939", "database": "InterPro", "categories": [ "Protein Classification" ] 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"MVGELRYREFRVPLGPGLHAYPDELIRQRVGHDGHPEYQIRWLILRRGDDGEGDSTQVDCKAEHILLWMSDDEIYANCHKMLGEDGQVIGPSQGSAEAGALDKSVLGEMETDVKSLIQRALRQLQECVGTVPPAPLLHTVHVLSAYASIEPLTGVFKDPRILDLLMHMLSSPDYQIRWSAGRMIQALSSHDAGTRIQILLSLSQQEAIEKQLDFDSRCALLALFAQATLAEHPMSFEGVQLPQVPGRLLFSLVKRYLRATFLLDQLNGGAGEQGAQNNLVPEELNVGRGRLELEFSMAMGTLISELVQAMRWDWASSRPGRLARSSYSIFQPQPADASLAFPHPQLIRRSKRFRPRTEFASVNTYALYVRDMLQPGMRVRMLDNYEEIAAGDEGQFRQSNDGMPPVQVLWESTGHTYWVHWHMLEILGFEEDIETVVEDAEYQGPVVSGALGIAPPSRRWKPITELFAVPYVVPEEEDTEESEHLTQAEWWELLFFIKKLNAADHQQVVQLLQDNLEGEHILDSEMLPELTVPVELAQDLLLSLTRQLDDSALRDLFNCYVYRKYGPEALAGQLGYPYLLNAQQGVFGFKAEAQPQESEGVASAEAKEAPSQSASPALQHLVEGLGPSGKLLVDLEKALSSEVPQESEVKPCLLQLQRQPQPFLRLMQSLDTPTTNKALHLTVLRILMQLVNFPEALLLPWHEAMDACVACLRSPNTDREVLQELIFFLHRLTSTSRDYAVILNQLGARETISKVLEKHRGKLELAQELRDMVFKCEKHAHLYRKLTTNILGGCIQMVLGQIEEHRRTHRPINIPFFDVFLRYLCQGSSEEMKEDKYWEKVEVSSNPHRASKLTDRNPKTYWESSGNAGSHSITLYMRQGVLIRQLTLLVAGEDSSYMPALVVVSGGDSISSLNTELNSVNVMPYASRVVLLKNLNRFWPVVQIRIKRCQQGGIDTRIRGLEVLGPKPTFWPVFREQLCRHTRLFYMVRAQAWSQDIAEDRRSLLHLSSRLNGALRQEQNFADRFLPDDEAAQALGKTCWDALVSPLVQNITSHDQDSTSSLGWLLDQYLECRDAAHNPQSRAAAFSSRVRRLTHLLVHVEPREAAPPVVAISQAKGRNRSHDWSSLATRGLPSSIMRNLTRCWRAVVEEQVNNFLTSSWKDDAFVPRYCELFYKLQKSSSELFGPRAAFLLAMQNGCADALLRLPFLRATHVTEQFARHIDQRIQGSRMGGARGMEMLAQLQRCLESVVIFSRLEIATTFEHYYQHYMADRLLSVGSSWLEGAVMEQIGLCFPNRLPQQMLQSLSISEELQRQFHVFQLQQLDQELLKLEDTEKKIQVAHEDSVKEHKSKKEEAAREIAAVAMAEEEEEKEEEKEEEREEEQEEEQEEEGEEELYYEGTMPEVCVLVLSPRYWPVTSVCHMLSSTARLPSYLRGTLNHYSNFYNKSQTHAREEDPNRQLQWTWQGRAELQFGDQTLHVSTVQMWLLLHFNHLKVVSVESLLALSELPPDVLNHAIGPLTSSRGPLDLQEQRDKPGGVLKIRDDSEEPRPRRGNVWLIPPQRYLKAEDEEGRNLEKRRNLLNCLVVRILKGHGDEGLHIDQLVCLVLEAWEKGPCPPRGLVSSLGRGAVCTSTDVLSCILHLLGKGTLRRRDDRPQKLCYAVPITVMEPHTESLNPGSTGPNPPLTFHTLQIRSRGVPYASCTDTQSFSTFR", "length": 1712, "header": "tr|A0A9J7EWK1-1|A0A9J7J2Q4_CRIGR Computationally mapped isoform of Cullin-7 isoform X1 OS=Cricetulus griseus OX=10029 GN=Cul7 PE=3 SV=1 CANONICAL=A0A9J7J2Q4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F1Z1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J2Q4/entry#A0A9J7F1Z1-1", "sequence": { "sequence": "MVGELRYREFRVPLGPGLHAYPDELIRQRVGHDGHPEYQIRWLILRRGDDGEGDSTQVDCKAEHILLWMSDDEIYANCHKMLGEDGQVIGPSQGSAEAGALDKSVLGEMETDVKSLIQRALRQLQECVGTVPPAPLLHTVHVLSAYASIEPLTGVFKDPRILDLLMHMLSSPDYQIRWSAGRMIQALSSHDAGTRIQILLSLSQQEAIEKQLDFDSRCALLALFAQATLAEHPMSFEGVQLPQVPGRLLFSLVKRYLRATFLLDQLNGGAGEQGAQNNLVPEELNVGRGRLELEFSMAMGTLISELVQAMRWDWASSRPGRLARSSYSIFQPQPADASLAFPHPQLIRRSKRFRPRTEFASVNTYALYVRDMLQPGMRVRMLDNYEEIAAGDEGQFRQSNDGMPPVQVLWESTGHTYWVHWHMLEILGFEEDIETVVEDAEYQGPVVSGALGIAPPSRRWKPITELFAVPYVVPEEEDTEESEHLTQAEWWELLFFIKKLNAADHQQVVQLLQDNLEGEHILDSEMLPELTVPVELAQDLLLSLTRQLDDSALRDLFNCYVYRKYGPEALAGQLGYPYLLNAQQGVFGFKAEAQPQESEGVASAEAKEAPSQSASPALQHLVEGLGPSGKLLVDLEKALSSEVPQESEVKPCLLQLQRQPQPFLRLMQSLDTPTTNKALHLTVLRILMQLVNFPEALLLPWHEAMDACVACLRSPNTDREVLQELIFFLHRLTSTSRDYAVILNQLGARETISKVLEKHRGKLELAQELRDMVFKCEKHAHLYRKLTTNILGGCIQMVLGQIEEHRRTHRPINIPFFDVFLRYLCQGSSEEMKEDKYWEKVEVSSNPHRASKLTDRNPKTYWESSGNAGSHSITLYMRQGVLISSHRFFFPTPRQLTLLVAGEDSSYMPALVVVSGGDSISSLNTELNSVNVMPYASRVVLLKNLNRFWPVVQIRIKRCQQGGIDTRIRGLEVLGPKPTFWPVFREQLCRHTRLFYMVRAQAWSQDIAEDRRSLLHLSSRLNGALRQEQNFADRFLPDDEAAQALGKTCWDALVSPLVQNITSHGNHDQDSTSSLGWLLDQYLECRDAAHNPQSRAAAFSSRVRRLTHLLVHVEPREAAPPVVAISQAKGRNRSHDWSSLATRGLPSSIMRNLTRCWRAVVEEQVNNFLTSSWKDDAFVPRYCELFYKLQKSSSELFGPRAAFLLAMQNGCADALLRLPFLRATHVTEQFARHIDQRIQGSRMGGARGMEMLAQLQRCLESVVIFSRLEIATTFEHYYQHYMADRLLSVGSSWLEGAVMEQIGLCFPNRLPQQMLQSLSISEELQRQFHVFQLQQLDQELLKLEDTEKKIQVAHEDSVKEHKSKKEEAAREIAAVAMAEEEEEKEEEKEEEREEEQEEEQEEEGEEELYYEGTMPEVCVLVLSPRYWPVTSVCHMLSSTARLPSYLRGTLNHYSNFYNKSQTHAREEDPNRQLQWTWQGRAELQFGDQTLHVSTVQMWLLLHFNHLKVVSVESLLALSELPPDVLNHAIGPLTSSRGPLDLQEQRDKPGGVLKIRDDSEEPRPRRGNVWLIPPQRYLKAEDEEGRNLEKRRNLLNCLVVRILKGHGDEGLHIDQLVCLVLEAWEKGPCPPRGLVSSLGRGAVCTSTDVLSCILHLLGKGTLRRRDDRPQKLCYAVPITVMEPHTESLNPGSTGPNPPLTFHTLQIRSRGVPYASCTDTQSFSTFR", "length": 1725, "header": "tr|A0A9J7F1Z1-1|A0A9J7J2Q4_CRIGR Computationally mapped isoform of Cullin-7 isoform X1 OS=Cricetulus griseus OX=10029 GN=Cul7 PE=3 SV=1 CANONICAL=A0A9J7J2Q4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J2Q4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J2Q4/entry#A0A9J7J2Q4-1", "sequence": { "sequence": "MVGELRYREFRVPLGPGLHAYPDELIRQRVGHDGHPEYQIRWLILRRGDDGEGDSTQVDCKAEHILLWMSDDEIYANCHKMLGEDGQVIGPSQGSAEAGALDKSVLGEMETDVKSLIQRALRQLQECVGTVPPAPLLHTVHVLSAYASIEPLTGVFKDPRILDLLMHMLSSPDYQIRWSAGRMIQALSSHDAGEGQYGEGQGRLGDSQDTVTGASDIIRTRIQILLSLSQQEAIEKQLDFDSRCALLALFAQATLAEHPMSFEGVQLPQVPGRLLFSLVKRYLRATFLLDQLNGGAGEQGAQNNLVPEELNVGRGRLELEFSMAMGTLISELVQAMRWDWASSRPGRLARSSYSIFQPQPADASLAFPHPQLIRRSKRFRPRTEFASVNTYALYVRDMLQPGMRVRMLDNYEEIAAGDEGQFRQSNDGMPPVQVLWESTGHTYWVHWHMLEILGFEEDIETVVEDAEYQGPVVSGALGIAPPSRRWKPITELFAVPYVVPEEEDTEESEHLTQAEWWELLFFIKKLNAADHQQVVQLLQDNLEGEHILDSEMLPELTVPVELAQDLLLSLTRQLDDSALRDLFNCYVYRKYGPEALAGQLGYPYLLNAQQGVFGFKAEAQPQESEGVASAEAKEAPSQSASPALQHLVEGLGPSGKLLVDLEKALSSEVPQESEVKPCLLQLQRQPQPFLRLMQSLDTPTTNKALHLTVLRILMQLVNFPEALLLPWHEAMDACVACLRSPNTDREVLQELIFFLHRLTSTSRDYAVILNQLGARETISKVLEKHRGKLELAQELRDMVFKCEKHAHLYRKLTTNILGGCIQMVLGQIEEHRRTHRPINIPFFDVFLRYLCQGSSEEMKEDKYWEKVEVSSNPHRASKLTDRNPKTYWESSGNAGSHSITLYMRQGVLISSHRFFFPTPRQLTLLVAGEDSSYMPALVVVSGGDSISSLNTELNSVNVMPYASRVVLLKNLNRFWPVVQIRIKRCQQGGIDTRIRGLEVLGPKPTFWPVFREQLCRHTRLFYMVRAQAWSQDIAEDRRSLLHLSSRLNGALRQEQNFADRFLPDDEAAQALGKTCWDALVSPLVQNITSHGNHDQDSTSSLGWLLDQYLECRDAAHNPQSRAAAFSSRVRRLTHLLVHVEPREAAPPVVAISQAKGRNRSHDWSSLATRGLPSSIMRNLTRCWRAVVEEQVNNFLTSSWKDDAFVPRYCELFYKLQKSSSELFGPRAAFLLAMQNGCADALLRLPFLRATHVTEQFARHIDQRIQGSRMGGARGMEMLAQLQRCLESVVIFSRLEIATTFEHYYQHYMADRLLSVGSSWLEGAVMEQIGLCFPNRLPQQMLQSLSISEELQRQFHVFQLQQLDQELLKLEDTEKKIQVAHEDSVKEHKSKKEEAAREIAAVAMAEEEEEKEEEKEEEREEEQEEEQEEEGEEELYYEGTMPEVCVLVLSPRYWPVTSVCHMLSSTARLPSYLRGTLNHYSNFYNKSQTHAREEDPNRQLQWTWQGRAELQFGDQTLHVSTVQMWLLLHFNHLKVVSVESLLALSELPPDVLNHAIGPLTSSRGPLDLQEQRDKPGGVLKIRDDSEEPRPRRGNVWLIPPQRYLKAEDEEGRNLEKRRNLLNCLVVRILKGHGDEGLHIDQLVCLVLEAWEKGPCPPRGLVSSLGRGAVCTSTDVLSCILHLLGKGTLRRRDDRPQKLCYAVPITVMEPHTESLNPGSTGPNPPLTFHTLQIRSRGVPYASCTDTQSFSTFR", "length": 1751, "header": "tr|A0A9J7J2Q4-1|A0A9J7J2Q4_CRIGR Isoform 1 of Cullin-7 isoform X1 OS=Cricetulus griseus OX=10029 GN=Cul7 PE=3 SV=1 CANONICAL=A0A9J7J2Q4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J735-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J2Q4/entry#A0A9J7J735-1", "sequence": { "sequence": "MVGELRYREFRVPLGPGLHAYPDELIRQRVGHDGHPEYQIRWLILRRGDDGEGDSTQVDCKAEHILLWMSDDEIYANCHKMLGEDGQVIGPSQGSAEAGALDKSVLGEMETDVKSLIQRALRQLQECVGTVPPAPLLHTVHVLSAYASIEPLTGVFKDPRILDLLMHMLSSPDYQIRWSAGRMIQALSSHDAGEGQYGEGQGRLGDSQDTVTGASDIIRTRIQILLSLSQQEAIEKQLDFDSRCALLALFAQATLAEHPMSFEGVQLPQVPGRLLFSLVKRYLRATFLLDQLNGGAGEQGAQNNLVPEELNVGRGRLELEFSMAMGTLISELVQAMRWDWASSRPGRLARSSYSIFQPQPADASLAFPHPQLIRRSKRFRPRTEFASVNTYALYVRDMLQPGMRVRMLDNYEEIAAGDEGQFRQSNDGMPPVQVLWESTGHTYWVHWHMLEILGFEEDIETVVEDAEYQGPVVSGALGIAPPSRRWKPITELFAVPYVVPEEEDTEESEHLTQAEWWELLFFIKKLNAADHQQVVQLLQDNLEGEHILDSEMLPELTVPVELAQDLLLSLTRQLDDSALRDLFNCYVYRKYGPEALAGQLGYPYLLNAQQGVFGFKAEAQPQESEGVASAEAKEAPSQSASPALQHLVEGLGPSGKLLVDLEKALSSEVPQESEVKPCLLQLQRQPQPFLRLMQSLDTPTTNKALHLTVLRILMQLVNFPEALLLPWHEAMDACVACLRSPNTDREVLQELIFFLHRLTSTSRDYAVILNQLGARETISKVLEKHRGKLELAQELRDMVFKCEKHAHLYRKLTTNILGGCIQMVLGQIEEHRRTHRPINIPFFDVFLRYLCQGSSEEMKEDKYWEKVEVSSNPHRASKLTDRNPKTYWESSGNAGSHSITLYMRQGVLISSHRFFFPTPRQLTLLVAGEDSSYMPALVVVSGGDSISSLNTELNSVNVMPYASRVVLLKNLNRFWPVVQIRIKRCQQGGIDTRIRGLEVLGPKPTFWPVFREQLCRHTRLFYMVRAQAWSQDIAEDRRSLLHLSSRLNGALRQEQNFADRFLPDDEAAQALGKTCWDALVSPLVQNITSHDQDSTSSLGWLLDQYLECRDAAHNPQSRAAAFSSRVRRLTHLLVHVEPREAAPPVVAISQAKGRNRSHDWSSLATRGLPSSIMRNLTRCWRAVVEEQVNNFLTSSWKDDAFVPRYCELFYKLQKSSSELFGPRAAFLLAMQNGCADALLRLPFLRATHVTEQFARHIDQRIQGSRMGGARGMEMLAQLQRCLESVVIFSRLEIATTFEHYYQHYMADRLLSVGSSWLEGAVMEQIGLCFPNRLPQQMLQSLSISEELQRQFHVFQLQQLDQELLKLEDTEKKIQVAHEDSVKEHKSKKEEAAREIAAVAMAEEEEEKEEEKEEEREEEQEEEQEEEGEEELYYEGTMPEVCVLVLSPRYWPVTSVCHMLSSTARLPSYLRGTLNHYSNFYNKSQTHAREEDPNRQLQWTWQGRAELQFGDQTLHVSTVQMWLLLHFNHLKVVSVESLLALSELPPDVLNHAIGPLTSSRGPLDLQEQRDKPGGVLKIRDDSEEPRPRRGNVWLIPPQRYLKAEDEEGRNLEKRRNLLNCLVVRILKGHGDEGLHIDQLVCLVLEAWEKGPCPPRGLVSSLGRGAVCTSTDVLSCILHLLGKGTLRRRDDRPQKLCYAVPITVMEPHTESLNPGSTGPNPPLTFHTLQIRSRGVPYASCTDTQSFSTFR", "length": 1748, "header": "tr|A0A9J7J735-1|A0A9J7J735_CRIGR Computationally mapped isoform of Cullin-7 isoform X2 OS=Cricetulus griseus OX=10029 GN=Cul7 PE=3 SV=1 CANONICAL=A0A9J7J2Q4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J767-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J2Q4/entry#A0A9J7J767-1", "sequence": { "sequence": "MVGELRYREFRVPLGPGLHAYPDELIRQRVGHDGHPEYQIRWLILRRGDDGEGDSTQVDCKAEHILLWMSDDEIYANCHKMLGEDGQVIGPSQGSAEAGALDKSVLGEMETDVKSLIQRALRQLQECVGTVPPAPLLHTVHVLSAYASIEPLTGVFKDPRILDLLMHMLSSPDYQIRWSAGRMIQALSSHDAGEGQYGEGQGRLGDSQDTVTGASDIIRTRIQILLSLSQQEAIEKQLDFDSRCALLALFAQATLAEHPMSFEGVQLPQVPGRLLFSLVKRYLRATFLLDQLNGGAGEQGAQNNLVPEELNVGRGRLELEFSMAMGTLISELVQAMRWDWASSRPGRLARSSYSIFQPQPADASLAFPHPQLIRRSKRFRPRTEFASVNTYALYVRDMLQPGMRVRMLDNYEEIAAGDEGQFRQSNDGMPPVQVLWESTGHTYWVHWHMLEILGFEEDIETVVEDAEYQGPVVSGALGIAPPSRRWKPITELFAVPYVVPEEEDTEESEHLTQAEWWELLFFIKKLNAADHQQVVQLLQDNLEGEHILDSEMLPELTVPVELAQDLLLSLTRQLDDSALRDLFNCYVYRKYGPEALAGQLGYPYLLNAQQGVFGFKAEAQPQESEGVASAEAKEAPSQSASPALQHLVEGLGPSGKLLVDLEKALSSEVPQESEVKPCLLQLQRQPQPFLRLMQSLDTPTTNKALHLTVLRILMQLVNFPEALLLPWHEAMDACVACLRSPNTDREVLQELIFFLHRLTSTSRDYAVILNQLGARETISKVLEKHRGKLELAQELRDMVFKCEKHAHLYRKLTTNILGGCIQMVLGQIEEHRRTHRPINIPFFDVFLRYLCQGSSEEMKEDKYWEKVEVSSNPHRASKLTDRNPKTYWESSGNAGSHSITLYMRQGVLIRQLTLLVAGEDSSYMPALVVVSGGDSISSLNTELNSVNVMPYASRVVLLKNLNRFWPVVQIRIKRCQQGGIDTRIRGLEVLGPKPTFWPVFREQLCRHTRLFYMVRAQAWSQDIAEDRRSLLHLSSRLNGALRQEQNFADRFLPDDEAAQALGKTCWDALVSPLVQNITSHGNHDQDSTSSLGWLLDQYLECRDAAHNPQSRAAAFSSRVRRLTHLLVHVEPREAAPPVVAISQAKGRNRSHDWSSLATRGLPSSIMRNLTRCWRAVVEEQVNNFLTSSWKDDAFVPRYCELFYKLQKSSSELFGPRAAFLLAMQNGCADALLRLPFLRATHVTEQFARHIDQRIQGSRMGGARGMEMLAQLQRCLESVVIFSRLEIATTFEHYYQHYMADRLLSVGSSWLEGAVMEQIGLCFPNRLPQQMLQSLSISEELQRQFHVFQLQQLDQELLKLEDTEKKIQVAHEDSVKEHKSKKEEAAREIAAVAMAEEEEEKEEEKEEEREEEQEEEQEEEGEEELYYEGTMPEVCVLVLSPRYWPVTSVCHMLSSTARLPSYLRGTLNHYSNFYNKSQTHAREEDPNRQLQWTWQGRAELQFGDQTLHVSTVQMWLLLHFNHLKVVSVESLLALSELPPDVLNHAIGPLTSSRGPLDLQEQRDKPGGVLKIRDDSEEPRPRRGNVWLIPPQRYLKAEDEEGRNLEKRRNLLNCLVVRILKGHGDEGLHIDQLVCLVLEAWEKGPCPPRGLVSSLGRGAVCTSTDVLSCILHLLGKGTLRRRDDRPQKLCYAVPITVMEPHTESLNPGSTGPNPPLTFHTLQIRSRGVPYASCTDTQSFSTFR", "length": 1741, "header": "tr|A0A9J7J767-1|A0A9J7J767_CRIGR Computationally mapped isoform of Cullin-7 isoform X3 OS=Cricetulus griseus OX=10029 GN=Cul7 PE=3 SV=1 CANONICAL=A0A9J7J2Q4-1" }, "locus": {} }, { "isoform_ac": "G3HR76-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J2Q4/entry#G3HR76-1", "sequence": { "sequence": "MVGELRYREFRVPLGPGLHAYPDELIRQRVGHDGHPEYQIRWLILRRGDDGEGDSTQVDCKAEHILLWMSDDEIYANCHKMLGEDGQVIGPSQGSAEAGALDKSVLGEMETDVKSLIQRALRQLQECVGTVPPAPLLHTVHVLSAYASIEPLTGVFKDPRILDLLMHMLSSPDYQIRWSAGRMIQALSSHDAGEGQYGEGQGRLGDSQDTVTGASDIIRTRIQILLSLSQQEAIEKQLDFDSRCALLALFAQATLAEHPMSFEGVQLPQVPGRLLFSLVKRYLRATFLLDQLNGGAGEQGAQNNLVPEELNVGRGRLELEFSMAMGTLISELVQAMRWDWASSRPGRLARSSYSIFQPQPADASLAFPHPQLIRRSKRFRPRTEFASVNTYALYVRDMLQPGMRVRMLDNYEEIAAGDEGQFRQSNDGMPPVQVLWESTGHTYWVHWHMLEILGFEEDIETVVEDAEYQGPVVSGALGIAPPSRRWKPITELFAVPYVVPEEEDTEESEHLTQAEWWELLFFIKKLNAADHQQVVQLLQDNLEGEHILDSEMLPELTVPVELAQDLLLSLTRQLDDSALRDLFNCYVYRKYGPEALAGQLGYPYLLNAQQGVFGFKAEAQPQESEGVASAEAKEAPSQSASPALQHLVEGLGPSGKLLVDLEKALSSEVPQESEVKPCLLQLQRQPQPFLRLMQSLDTPTTNKALHLTVLRILMQLVNFPEALLLPWHEAMDACVACLRSPNTDREVLQELIFFLHRLTSTSRDYAVILNQLGARETISKVLEKHRGKLELAQELRDMVFKCEKHAHLYRKLTTNILGGCIQMVLGQIEEHRRTHRPINIPFFDVFLRYLCQGSSEEMKEDKYWEKVEVSSNPHRASKLTDRNPKTYWESSGNAGSHSITLYMRQGVLIRQLTLLVAGEDSSYMPALVVVSGGDSISSLNTELNSVNVMPYASRVVLLKNLNRFWPVVQIRIKRCQQGGIDTRIRGLEVLGPKPTFWPVFREQLCRHTRLFYMVRAQAWSQDIAEDRRSLLHLSSRLNGALRQEQNFADRFLPDDEAAQALGKTCWDALVSPLVQNITSHDQDSTSSLGWLLDQYLECRDAAHNPQSRAAAFSSRVRRLTHLLVHVEPREAAPPVVAISQAKGRNRSHDWSSLATRGLPSSIMRNLTRCWRAVVEEQVNNFLTSSWKDDAFVPRYCELFYKLQKSSSELFGPRAAFLLAMQNGCADALLRLPFLRATHVTEQFARHIDQRIQGSRMGGARGMEMLAQLQRCLESVVIFSRLEIATTFEHYYQHYMADRLLSVGSSWLEGAVMEQIGLCFPNRLPQQMLQSLSISEELQRQFHVFQLQQLDQELLKLEDTEKKIQVAHEDSVKEHKSKKEEAAREIAAVAMAEEEEEKEEEKEEEREEEQEEEQEEEGEEELYYEGTMPEVCVLVLSPRYWPVTSVCHMLSSTARLPSYLRGTLNHYSNFYNKSQTHAREEDPNRQLQWTWQGRAELQFGDQTLHVSTVQMWLLLHFNHLKVVSVESLLALSELPPDVLNHAIGPLTSSRGPLDLQEQRDKPGGVLKIRDDSEEPRPRRGNVWLIPPQRYLKAEDEEGRNLEKRRNLLNCLVVRILKGHGDEGLHIDQLVCLVLEAWEKGPCPPRGLVSSLGRGAVCTSTDVLSCILHLLGKGTLRRRDDRPQKLCYAVPITVMEPHTESLNPGSTGPNPPLTFHTLQIRSRGVPYASCTDTQSFSTFR", "length": 1738, "header": "tr|G3HR76-1|A0A9J7J2Q4_CRIGR Computationally mapped isoform of Cullin-7 isoform X1 OS=Cricetulus griseus OX=10029 GN=Cul7 PE=3 SV=1 CANONICAL=A0A9J7J2Q4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HR76", "url": "https://www.uniprot.org/uniprotkb/G3HR76" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HR76", "url": "https://www.uniprot.org/uniprotkb/G3HR76" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100771595", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771595", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 10, "go_terms": [ { "name": "negative regulation of insulin receptor signaling pathway", "id": "GO:0046627", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046627", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J2Q4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J2Q4" } ], "pmid": "" }, { "name": "vasculogenesis", "id": "GO:0001570", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001570", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J2Q4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J2Q4" } ], "pmid": "" }, { "name": "placenta development", "id": "GO:0001890", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001890", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J2Q4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J2Q4" } ], "pmid": "" }, { "name": "protein ubiquitination", "id": "GO:0016567", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016567", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J2Q4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J2Q4" } ], "pmid": "" }, { "name": "mitotic cytokinesis", "id": "GO:0000281", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000281", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J2Q4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J2Q4" } ], "pmid": "" }, { "name": "positive regulation of dendrite morphogenesis", "id": "GO:0050775", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0050775", "evidence": [ { 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This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027242476.1. 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027245984", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027245984" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J5U3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J5U3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Fam160b2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J5U3", "locus": {} } ], "crossref": [ { "id": "A0A9J7J5U3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7J5U3", "database": "AlphaFoldDB", "categories": [] }, { "id": "100750824", "url": "https://www.ncbi.nlm.nih.gov/gene/100750824", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019384", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019384", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045668", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045668", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045669", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045669", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR21705", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21705", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21705:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21705:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10257", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10257", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF19311", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19311", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF19314", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19314", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027245984", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027245984", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7J5U3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J5U3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J5U3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J5U3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3GUX4", "url": "https://www.uniprot.org/uniprotkb/G3GUX4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3GUX4-1", "url": "https://www.uniprot.org/uniprotkb/G3GUX4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLSRLGALLQEAVGAREPNIDLLQSFVEHWKGITHYYIESTDENTPAKKTDIPWRLKQMLDILVYEERQQVSSGEAGPCLEYLLQHKILETLCTLGKAEYPPGMRQQVFQFFSKVLAQVQHPLLHYLSVHRPVQKLLRLGGAAPGSLTEKEEVQFTSVLCSKIQQDPELLAYILEGKKIIGKKTSREPTALPKDTAGYRDKDCPHSDAPSRDSGLDREHCGVPALSSHLPAETEGPENGPGESNLITSLLGLCKSKSRVALKARENVLLLVSVASPAAATYLTQSTSCCVVIAEHLCQLYRSMPAFLDPADIATLEGISWRLPSAPSDEASFPGKEALAAFLGWFDYCDHLTTEAHTVVADALAKAVAEKLFVETLQPQLLHVSEQTILTSTALLTALLRQLRSPALLQEAMTFLLGTDQQPAATEESPRTLGTHLIMHCDHLSDEISIATLRLFEELLQKPHERVIRSLVLQNLEGRLYVARGSPEPESYEDTLDLEEDPYFTDGFLDSGLQPSTKPPPAPATSSDGKTAVTEIVNSFLCLVPEEAKTSAFLEENGYDTYVHDAYGLFQECSSRVASWGWPLGPAPLDSHEPERPFFEGRFLQVLFDRMARILDQPYSLNLQVTSVLSRLALFPHPHIHEYLLDPYISLAPGCRSLFSVLVRVIGDLMQRIQRVPQFPGKLLLVRKQLMGQIPGEHLDHQTLLQGVVVLEEFCKELAAIAFVKFPPQDPHLNFSPPPEGQV", "length": 742, "header": "tr|A0A9J7J5U3-1|A0A9J7J5U3_CRIGR Isoform 1 of Protein FAM160B2 isoform X4 OS=Cricetulus griseus OX=10029 GN=Fam160b2 PE=3 SV=1 CANONICAL=A0A9J7J5U3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7J5U3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J5U3/entry#A0A9J7J5U3-1", "sequence": { "sequence": "MLSRLGALLQEAVGAREPNIDLLQSFVEHWKGITHYYIESTDENTPAKKTDIPWRLKQMLDILVYEERQQVSSGEAGPCLEYLLQHKILETLCTLGKAEYPPGMRQQVFQFFSKVLAQVQHPLLHYLSVHRPVQKLLRLGGAAPGSLTEKEEVQFTSVLCSKIQQDPELLAYILEGKKIIGKKTSREPTALPKDTAGYRDKDCPHSDAPSRDSGLDREHCGVPALSSHLPAETEGPENGPGESNLITSLLGLCKSKSRVALKARENVLLLVSVASPAAATYLTQSTSCCVVIAEHLCQLYRSMPAFLDPADIATLEGISWRLPSAPSDEASFPGKEALAAFLGWFDYCDHLTTEAHTVVADALAKAVAEKLFVETLQPQLLHVSEQTILTSTALLTALLRQLRSPALLQEAMTFLLGTDQQPAATEESPRTLGTHLIMHCDHLSDEISIATLRLFEELLQKPHERVIRSLVLQNLEGRLYVARGSPEPESYEDTLDLEEDPYFTDGFLDSGLQPSTKPPPAPATSSDGKTAVTEIVNSFLCLVPEEAKTSAFLEENGYDTYVHDAYGLFQECSSRVASWGWPLGPAPLDSHEPERPFFEGRFLQVLFDRMARILDQPYSLNLQVTSVLSRLALFPHPHIHEYLLDPYISLAPGCRSLFSVLVRVIGDLMQRIQRVPQFPGKLLLVRKQLMGQIPGEHLDHQTLLQGVVVLEEFCKELAAIAFVKFPPQDPHLNFSPPPEGQV", "length": 742, "header": "tr|A0A9J7J5U3-1|A0A9J7J5U3_CRIGR Isoform 1 of Protein FAM160B2 isoform X4 OS=Cricetulus griseus OX=10029 GN=Fam160b2 PE=3 SV=1 CANONICAL=A0A9J7J5U3-1" }, "locus": {} }, { "isoform_ac": "G3GUX4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J5U3/entry#G3GUX4-1", "sequence": { "sequence": "MLDILVYEERQQVSSGEAGPCLEYLLQHKILETLCTLGKAEYPPGMRQQVFQFFSKVLAQVQHPLLHYLSVHRPVQKLLRLGGAAPGSLTEKEEVQFTSVLCSKIQQDPELLAYILEGKKIIGKKTSREPTALPKDTAGYRDKDCPHSDAPSRDSGLDREHCGVPALSSHLPAETEGPENGPGESNLITSLLGLCKSKKSRVALKARENVLLLVSVASPAAATYLTQSTSCCVVIAEHLCQLYRSMPAFLDPADIATLEGISWRLPSAPSDEASFPGKEALAAFLGWFDYCDHLTTEAHTVVADALAKAVAEKLFVETLQPQLLHVSEQTILTSTALLTALLRQLRSPALLQEAMTFLLGTDQQPAATEESPRTLGTHLIMHCDHLSDEISIATLRLFEELLQKPHERVIRSLVLQNLEGRLYVARGSPEPESYEDTLDLEEDPYFTDGFLDSGLQPSTKPPPAPATSSDGKTAVTEIVNSFLCLVPEEAKTSAFLEENGYDTYVHDAYGLFQECSSRVASWGWPLGPAPLDSHEPERPFFEGRFLQVLFDRMARILDQPYSLNLQVTSVLSRLALFPHPHIHEYLLDPYISLAPGCRSLFSVLVRVIGDLMQRIQRVPQFPGKLLLVRKQLMGQIPGEHLDHQTLLQGVVVLEEFCKELAAIAFVKFPPQDPHLNFSPPPEGQV", "length": 685, "header": "tr|G3GUX4-1|A0A9J7J5U3_CRIGR Computationally mapped isoform of Protein FAM160B2 isoform X4 OS=Cricetulus griseus OX=10029 GN=Fam160b2 PE=3 SV=1 CANONICAL=A0A9J7J5U3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3GUX4", "url": "https://www.uniprot.org/uniprotkb/G3GUX4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3GUX4", "url": "https://www.uniprot.org/uniprotkb/G3GUX4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 733, "end_pos": 735, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7J5U3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J5U3" }, { "id": "PF19314", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19314" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "FHF complex subunit HOOK-interacting protein C-terminal", "eco_id": "ECO_0000259", "start_pos": 599, "end_pos": 691, "start_aa": "Glu", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 733, "end_pos": 735 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7J9D0-1", "uniprot_ac": "A0A9J7J9D0", "uniprot_id": "A0A9J7J9D0_CRIGR", "mass": { "chemical_mass": 109212.0, "monoisotopic_mass": 109212.0 }, "refseq": { "ac": "XP_016833670", "name": "cell division cycle-associated protein 2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016833670" }, "gene_names": [ { "name": "Cdca2", "type": "recommended", "evidence": [ { "id": "A0A9J7J9D0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9D0" } ] }, { "name": "Cdca2", "type": "synonym", "evidence": [ { "id": "XP_016833670", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016833670" } ] } ], "protein_names": [ { "name": "Cell division cycle-associated protein 2 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7J9D0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9D0/entry#names_and_taxonomy" } ] }, { "name": "cell division cycle-associated protein 2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_016833670", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016833670" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613613.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_016833670", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016833670" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J9D0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9D0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cdca2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9D0", "locus": {} } ], "crossref": [ { "id": "A0A9J7J9D0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7J9D0", "database": "AlphaFoldDB", "categories": [] }, { "id": "100775015", "url": "https://www.ncbi.nlm.nih.gov/gene/100775015", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029334", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029334", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100775015", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100775015", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7J9D0", "url": "https://www.orthodb.org/?gene=A0A9J7J9D0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3GV08", "url": "https://www.orthodb.org/?gene=G3GV08", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21603", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21603", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21603:SF16", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21603:SF16", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15276", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15276", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_016833670", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016833670", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F2E3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2E3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F2E3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2E3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F2H4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2H4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F2H4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2H4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J9D0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9D0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J9D0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9D0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3GV08", "url": "https://www.uniprot.org/uniprotkb/G3GV08", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3GV08-1", "url": "https://www.uniprot.org/uniprotkb/G3GV08-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MCLARGSFRAGSSSPGIHEGLPAASESVTMDASSHDKQPSEARECVVNNSGNASFILGTGKSVTPQKRVEDATPNLCTPVTVKSPLNFSTITVEQLGITPESFVKTPSGKSASLQKTRRRSTVGVRGSPETNCLIRFIAQQRSLKNAARSLLTQNSPFQGSPGLYRHASALKERMAAFRSAFHSVQETEKMAGGPAASKADGESKTSNLTKKEGLVEYQQSGFPLNSSSKRRRISSQNSPDDHLSSAKGKVVCGQMLADQSCAIGTSADLAEKSSDIGPAQPGCLVAPCPELMETSHGLGVADCVEDTQSVVAVPLDTPEAQVNADTAPAIRSSPVFGSSTPSKTFVLRSVLKKPGKLFAENGKECILYDSGSHLIPDPSNCKEQRAGRENCKTPGFLNLKKRKRVTFGEDLSPEVFDESLPANTPLCKGGTPVRQRNLNAASPLQSPVHEQLLQPNFDDSEENLENIEPTQIPIAILSPSKSSFSETLPGIDTCSSLGNLEQISYNVGRPTRISHRRKQVMSSAGGVVCNSYTTEAEPCKEKNMNRRTSQEKKCISNALPGKKQVLKSYRKKKRRGKKSVEKSLYGERDMASKKPLLSPIPELPEVSEMTPLADCTQKICSDDFNVSDKQEEVISLEIPAKRKRLLTQEEDLPEFDPAFDQSLVSELCCCVLPVTAASVGGPNANAGDTGRAGNSSTKIKHQSANEPKTETKTENSPMPCASVTREHVVSDNPKPLCIPWCQEFSETDKENPCEVLTVSENMNMKCEEESACPAPKGNLQCDPVTSDSDRGGNCSEDVLVENLKETTSHSETVGRKCSENGSLMSGRERKRRRLSMLCCEGQSSYLEQKGDSTSSNSGGSSVEISLRNPQLCEDLSDAIEQSFQRTNTKLKVRRSTRLQGNLDSTGLIWILPPTPPTSQKTKRRMTICAFDSRRLQSMSSREDTVSSGQTPNPLPSIPGSGCQGIGSSKLPGKRRKSCVYTLPNAESTTEPPHFKRIPSLKKGESSQLQ", "length": 1010, "header": "tr|A0A9J7J9D0-1|A0A9J7J9D0_CRIGR Isoform 1 of Cell division cycle-associated protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Cdca2 PE=4 SV=1 CANONICAL=A0A9J7J9D0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F2E3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9D0/entry#A0A9J7F2E3-1", "sequence": { "sequence": "MCLARGSFRAGSSSPGIHEGLPAASESVTMDASSHDKQPSEARECVVNNSGNASFILGTGKSVTPQKRVEDATPNLCTPVTVKSPLNFSTITVEQLGITPESFVKTPSGKSASLQKTRRRSTVGVRGSPETNCLIRFIAQQRSLKNAARSLLTQNSPFQGSPGLYRHASALKERMAAFRSAFHSVQETEKMAGGPAASKADGESKTSNLTKKEGLVEYQQSGFPLNSSSKRRRISSQNSPDDHLSSAKGKVVCGQMLADQSCAIGTSADLAEKSSDIGPAQPGCLVAPCPELMETSHGLGVADCVEDTQSVVAVPLDTPEAQVNADTAPAIRSSPVFGSSTPSKTFVLRSVLKKPGKLFAENGKECILYDSGSHLIPDPSNCKEQRAGRENCKTPGFLNLKKRKRVTFGEDLSPEVFDESLPANTPLCKGGTPVRQRNLNAASPLQSPVHEQLLQPNFDDSEENLENIEPTQIPIAILSPSKSSFSETLPGIDTCSSLGNLEQISYNVGRPTRISHRRKVMSSAGGVVCNSYTTEAEPCKEKNMNRRTSQEKKCISNALPGKKQVLKSYRKKKRRGKKSVEKSLYGERDMASKKPLLSPIPELPEVSEMTPLADCTQKICSDDFNVSDKQEEVISLEIPAKRKRLLTQEEDLPEFDPAFDQSLVSELCCCVLPVTAASVGGPNANAGDTGRAGNSSTKIKHQSANEPKTETKTENSPMPCASVTREHVVSDNPKPLCIPWCQEFSETDKENPCEVLTVSENMNMKCEEESACPAPKGNLQCDPVTSDSDRGGNCSEDVLVENLKETTSHSETVGRKCSENGSLMSGRERKRRRLSMLCCEGQSSYLEQKGDSTSSNSGGSSVEISLRNPQLCEDLSDAIEQSFQRTNTKLKVRRSTRLQGNLDSTGLIWILPPTPPTSQKTKRRMTICAFDSRRLQSMSSREDTVSSGQTPNPLPSIPGSGCQGIGSSKLPGKRRKSCVYTLPNAESTTEPPHFKRIPSLKKGESSQLQ", "length": 1009, "header": "tr|A0A9J7F2E3-1|A0A9J7J9D0_CRIGR Computationally mapped isoform of Cell division cycle-associated protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Cdca2 PE=4 SV=1 CANONICAL=A0A9J7J9D0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F2H4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9D0/entry#A0A9J7F2H4-1", "sequence": { "sequence": "MCLARGSFRAGSSSPGIHEGLPAASESVTMDASSHDKQPSEARECVVNNSGNASFILGTGKSVTPQKRVEDATPNLCTPVTVKSPLNFSTITVEQLGITPESFVKTPSGKSASLQKTRRRSTVGVRGSPETNCLIRFIAQQRSLKNAARSLLTQNSPFQGSPGLYRHASALKERMAAFRSAFHSVQETEKMAGGPAASKADGESKTSNLTKKEGLVEYQQSGFPLNSSSKRRRISSQNSPDDHLSSAKGKVVCGQMLADQSCAIGTSADLAESSDIGPAQPGCLVAPCPELMETSHGLGVADCVEDTQSVVAVPLDTPEAQVNADTAPAIRSSPVFGSSTPSKTFVLRSVLKKPGKLFAENGKECILYDSGSHLIPDPSNCKEQRAGRENCKTPGFLNLKKRKRVTFGEDLSPEVFDESLPANTPLCKGGTPVRQRNLNAASPLQSPVHEQLLQPNFDDSEENLENIEPTQIPIAILSPSKSSFSETLPGIDTCSSLGNLEQISYNVGRPTRISHRRKQVMSSAGGVVCNSYTTEAEPCKEKNMNRRTSQEKKCISNALPGKKQVLKSYRKKKRRGKKSVEKSLYGERDMASKKPLLSPIPELPEVSEMTPLADCTQKICSDDFNVSDKQEEVISLEIPAKRKRLLTQEEDLPEFDPAFDQSLVSELCCCVLPVTAASVGGPNANAGDTGRAGNSSTKIKHQSANEPKTETKTENSPMPCASVTREHVVSDNPKPLCIPWCQEFSETDKENPCEVLTVSENMNMKCEEESACPAPKGNLQCDPVTSDSDRGGNCSEDVLVENLKETTSHSETVGRKCSENGSLMSGRERKRRRLSMLCCEGQSSYLEQKGDSTSSNSGGSSVEISLRNPQLCEDLSDAIEQSFQRTNTKLKVRRSTRLQGNLDSTGLIWILPPTPPTSQKTKRRMTICAFDSRRLQSMSSREDTVSSGQTPNPLPSIPGSGCQGIGSSKLPGKRRKSCVYTLPNAESTTEPPHFKRIPSLKKGESSQLQ", "length": 1009, "header": "tr|A0A9J7F2H4-1|A0A9J7J9D0_CRIGR Computationally mapped isoform of Cell division cycle-associated protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Cdca2 PE=4 SV=1 CANONICAL=A0A9J7J9D0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J9D0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9D0/entry#A0A9J7J9D0-1", "sequence": { "sequence": "MCLARGSFRAGSSSPGIHEGLPAASESVTMDASSHDKQPSEARECVVNNSGNASFILGTGKSVTPQKRVEDATPNLCTPVTVKSPLNFSTITVEQLGITPESFVKTPSGKSASLQKTRRRSTVGVRGSPETNCLIRFIAQQRSLKNAARSLLTQNSPFQGSPGLYRHASALKERMAAFRSAFHSVQETEKMAGGPAASKADGESKTSNLTKKEGLVEYQQSGFPLNSSSKRRRISSQNSPDDHLSSAKGKVVCGQMLADQSCAIGTSADLAEKSSDIGPAQPGCLVAPCPELMETSHGLGVADCVEDTQSVVAVPLDTPEAQVNADTAPAIRSSPVFGSSTPSKTFVLRSVLKKPGKLFAENGKECILYDSGSHLIPDPSNCKEQRAGRENCKTPGFLNLKKRKRVTFGEDLSPEVFDESLPANTPLCKGGTPVRQRNLNAASPLQSPVHEQLLQPNFDDSEENLENIEPTQIPIAILSPSKSSFSETLPGIDTCSSLGNLEQISYNVGRPTRISHRRKQVMSSAGGVVCNSYTTEAEPCKEKNMNRRTSQEKKCISNALPGKKQVLKSYRKKKRRGKKSVEKSLYGERDMASKKPLLSPIPELPEVSEMTPLADCTQKICSDDFNVSDKQEEVISLEIPAKRKRLLTQEEDLPEFDPAFDQSLVSELCCCVLPVTAASVGGPNANAGDTGRAGNSSTKIKHQSANEPKTETKTENSPMPCASVTREHVVSDNPKPLCIPWCQEFSETDKENPCEVLTVSENMNMKCEEESACPAPKGNLQCDPVTSDSDRGGNCSEDVLVENLKETTSHSETVGRKCSENGSLMSGRERKRRRLSMLCCEGQSSYLEQKGDSTSSNSGGSSVEISLRNPQLCEDLSDAIEQSFQRTNTKLKVRRSTRLQGNLDSTGLIWILPPTPPTSQKTKRRMTICAFDSRRLQSMSSREDTVSSGQTPNPLPSIPGSGCQGIGSSKLPGKRRKSCVYTLPNAESTTEPPHFKRIPSLKKGESSQLQ", "length": 1010, "header": "tr|A0A9J7J9D0-1|A0A9J7J9D0_CRIGR Isoform 1 of Cell division cycle-associated protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Cdca2 PE=4 SV=1 CANONICAL=A0A9J7J9D0-1" }, "locus": {} }, { "isoform_ac": "G3GV08-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9D0/entry#G3GV08-1", "sequence": { "sequence": "MDASSHDKQPSEARECVVNNSGNASFILGTGKSVTPQKRVEDATPNLCTPVTVKSPLNFSTITVEQLGITPESFVKTPSGKSASLQKTRRRSTVGVRGSPETNCLIRFIAQQRSLKNAARSLLTQNSPFQGSPGLYRHASALKERMAAFRSAFHSVQETEKMAGGPAASKADGESKTSNLTKKEGLVEYQQSGFPLNSSSKRRRISSQNSPDDHLSSAKGKVVCGQMLADQSCAIGTSADLAEKSSDIGPAQPGCLVAPCPELMETSHGLGVADCVEDTQSVVAVPLDTPEAQVNADTAPAIRSSPVFGSSTPSKTFVLRSVLKKPGKLFAENGKECILYDSGSHLIPDPSNCKEQRAGRENCKTPGFLNLKKRKRVTFGEDLSPEVFDESLPANTPLCKGGTPVRQRNLNAASPLQSPVHEQLLQPNFDDSEENLENIEPTQIPIAILSPSKSSFSETLPGIDTCSSLGNLEQISYNVGRPTRISHRRKQVMSSAGGVVCNSYTTEAEPCKEKNMNRRTSQEKKCISNALPGKKQVLKSYRKKKRRGKKSVEKSLYGERDMASKKPLLSPIPELPEVSEMTPLADCTQKICSDDFNVSDKQEEVISLEIPAKRKRLLTQEEDLPEFDPAFDQSLVSELCCCVLPVTAASVGGPNANAGDTGRAGNSSTKIKHQSANEPKTETKTENSPMPCASVTREHVVSDNPKPLCIPWCQEFSETDKENPCEVLTVSENMNMKCEEESACPAPKGNLQCDPVTSDSDRGGNCSEDVLVENLKETTSHSETVGRKCSENGSLMSGRERKRRRLSMLCCEGQSSYLEQKGDSTSSNSGGSSVEISLRNPQLCEDLSDAIEQSFQRTNTKLKVRRSTRLQGNLDSTGLIWILPPTPPTSQKTKRRMTICAFDSRRLQSMSSREDTVSSGQTPNPLPSIPGSGCQGIGSSKLPGKRRKSCVYTLPNAESTTEPPHFKRIPSLKKGESSQLQ", "length": 981, "header": "tr|G3GV08-1|A0A9J7J9D0_CRIGR Computationally mapped isoform of Cell division cycle-associated protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Cdca2 PE=4 SV=1 CANONICAL=A0A9J7J9D0-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 915, "start_aa": "Thr", "end_pos": 915, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr915", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3GV08", "url": "https://www.uniprot.org/uniprotkb/G3GV08" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3GV08", "url": "https://www.uniprot.org/uniprotkb/G3GV08" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100775015", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100775015", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J9D0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9D0" } ], "pmid": "" }, { "name": "chromosome", "id": "GO:0005694", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005694", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J9D0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9D0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "cell division", "id": "GO:0051301", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051301", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J9D0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9D0" } ], "pmid": "" }, { "name": "regulation of mitotic nuclear division", "id": "GO:0007088", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007088", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J9D0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9D0" } ], "pmid": "" }, { "name": "regulation of chromosome segregation", "id": "GO:0051983", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051983", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J9D0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9D0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 208, "end_pos": 210, "annotation": "n_glycosylation_sequon" }, { "start_pos": 226, "end_pos": 228, "annotation": "n_glycosylation_sequon" }, { "start_pos": 48, "end_pos": 50, "annotation": "n_glycosylation_sequon" }, { "start_pos": 52, "end_pos": 54, "annotation": "n_glycosylation_sequon" }, { "start_pos": 626, "end_pos": 628, "annotation": "n_glycosylation_sequon" }, { "start_pos": 695, "end_pos": 697, "annotation": "n_glycosylation_sequon" }, { "start_pos": 794, "end_pos": 796, "annotation": "n_glycosylation_sequon" }, { "start_pos": 821, "end_pos": 823, "annotation": "n_glycosylation_sequon" }, { "start_pos": 87, "end_pos": 89, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7J9D0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9D0" }, { "id": "PF15276", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15276" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PP1-binding", "eco_id": "ECO_0000259", "start_pos": 402, "end_pos": 460, "start_aa": "Lys", "end_aa": "Asp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 915 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 208, "end_pos": 210 }, { "start_pos": 226, "end_pos": 228 }, { "start_pos": 48, "end_pos": 50 }, { "start_pos": 52, "end_pos": 54 }, { "start_pos": 626, "end_pos": 628 }, { "start_pos": 695, "end_pos": 697 }, { "start_pos": 794, "end_pos": 796 }, { "start_pos": 821, "end_pos": 823 }, { "start_pos": 87, "end_pos": 89 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7HEA1-1", "uniprot_ac": "A0A9J7HEA1", "uniprot_id": "A0A9J7HEA1_CRIGR", "mass": { "chemical_mass": 22191.0, "monoisotopic_mass": 22191.0 }, "refseq": { "ac": "XP_035308032", "name": "leukemia inhibitory factor isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308032" }, "gene_names": [ { "name": "Lif", "type": "recommended", "evidence": [ { "id": "A0A9J7HEA1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HEA1" } ] }, { "name": "Lif", "type": "synonym", "evidence": [ { "id": "XP_035308032", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308032" } ] } ], "protein_names": [ { "name": "Leukemia inhibitory factor isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7HEA1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HEA1/entry#names_and_taxonomy" } ] }, { "name": "leukemia inhibitory factor isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035308032", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308032" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035308032", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308032" } ] }, { "annotation": "LIF has the capacity to induce terminal differentiation in leukemic cells. 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"tr|A0A9J7HEA1-1|A0A9J7HEA1_CRIGR Isoform 1 of Leukemia inhibitory factor isoform X2 OS=Cricetulus griseus OX=10029 GN=Lif PE=4 SV=1 CANONICAL=A0A9J7HEA1-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MGW6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HEA1/entry#A0A8C2MGW6-1", "sequence": { "sequence": "MKVLAAGVVPLLLVLHWKHGAGSPLPITPVNATCATRHPCHGNLMSQIKNQLAQLNGSANALFISYYTAQGEPFPNNVDKLCGPNMTDFPPFHANGTEKTKLVELYRMVAYLSASLGNVTRDQRTLNPDAVSLHGKLNATIDTMRGLLSNVLCRLCNKYHVGHVDVTYGPDTSSKDVFQKKKLGCQLLGTYKQVISVVAQAF", "length": 202, "header": "tr|A0A8C2MGW6-1|A0A9J7HEA1_CRIGR Computationally mapped isoform of Leukemia inhibitory factor isoform X2 OS=Cricetulus griseus OX=10029 GN=Lif PE=4 SV=1 CANONICAL=A0A9J7HEA1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HAU1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HEA1/entry#A0A9J7HAU1-1", "sequence": { "sequence": "MGLWLFLGQRQGMAAVHTACGRSESKHLRPTPAGHEESCPVIALCWLGSPRQARRGPVSCDSGHSGLATQPRGIKYRDAPSPHPTPLLLLPVSQHHRPTRVRLCLWCGLSTSWVLSLGVGWKWGEPPATSSGRKSGGGQGEEPTPEKPQQEREAEGPNHDGVALKTGQSVQTVEGCDKHRDHEQ", "length": 184, "header": "tr|A0A9J7HAU1-1|A0A9J7HEA1_CRIGR Computationally mapped isoform of Leukemia inhibitory factor isoform X2 OS=Cricetulus griseus OX=10029 GN=Lif PE=4 SV=1 CANONICAL=A0A9J7HEA1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HEA1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HEA1/entry#A0A9J7HEA1-1", "sequence": { "sequence": "MGLWLFLGQRQGMAAVHTACGRSESKHLRPTPAGHEESCPVIALCWLGSPRQARRGPVSCDSGHSGLATQPRGIKYRDAPSPHPTPLLLLPVSQHHRPTRVRLCLWCGLSTSWVLSLGVGWKWGEPPATSSGRKSGGGQGEEPTPEKPQQEREAEGPNHDGVALKTGQSVQTVEGCDKHRDHEMKKLRVRSVRFPKATHPVQH", "length": 203, "header": "tr|A0A9J7HEA1-1|A0A9J7HEA1_CRIGR Isoform 1 of Leukemia inhibitory factor isoform X2 OS=Cricetulus griseus OX=10029 GN=Lif PE=4 SV=1 CANONICAL=A0A9J7HEA1-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 144, "start_aa": "Thr", "end_pos": 144, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr144", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 31, "start_aa": "Thr", "end_pos": 31, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr31", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MGW6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MGW6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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"annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027252456", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252456" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JC62", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JC62" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tns2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JC62", "locus": {} } ], "crossref": [ { "id": "cd01213", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01213", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd09927", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09927", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd20887", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20887", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100752687", "url": "https://www.ncbi.nlm.nih.gov/gene/100752687", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000980", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000980", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002219", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002219", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006020", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006020", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013625", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013625", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR014020", "url": "https://www.ebi.ac.uk/interpro/entry/IPR014020", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029021", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029021", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029023", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029023", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033929", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033929", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035012", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035012", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035892", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035892", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036860", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036860", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046349", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046349", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051484", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051484", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100752687", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752687", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JC62", "url": "https://www.orthodb.org/?gene=A0A9J7JC62", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45734", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45734", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45734:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45734:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00017", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00017", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08416", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08416", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF10409", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10409", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027252456", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252456", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "10684", "url": "https://www.rhea-db.org/rhea/10684", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7F6P9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6P9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F6P9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6P9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F7G6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7G6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F7G6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7G6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FB69", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB69", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FB69-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB69-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FBN3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBN3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FBN3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBN3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JC62", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JC62", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JC62-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JC62-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGWPGGAPCCCPGPPRPQPSGRPPQPRKAEPHSFREKVFRKKAPVCAVCKVTIDGTGVSCRVCKVATHRKCEAKVTSSCQALPPAELRRNTAPVRRIEHLGSTKSLNHSKQRSTLPRSFSLDPLMERRWDLDLTYVTERILAAAFPARPDEQRHRGHLRELAHVLQSKHRDKYLLFNLSEKRHDLTRLNPKVQDFGWPELHAPPLDKLCSICKAMETWLSADPQHVVVLYCKGSKGKLGVIVSAYMHYSKISAGADQALATLTMRKFCEDKVATELQPSQRRYVSYFSGLLSGSIRMNSSPLFLHYVFVPMLPAFEPNTGFQPFLKIYQSMQLVYTSGVYRIAGPGPQPLCISLEPALLLKGDVMVTCYHKGGQGTDRTLVFRVQFHTCTMHGSRLTFPKDQLDEAWADERFPFQASVEFVFSSSPEKVKGNTPRNDPSVSVDYNTTEPAVRWDSYENFNQHHEDSVDGSLAHTRGPLDGSPYAQVQRVPHQTPPAPSPELPPPPMLSVSSDSGHSSTLTTEPTAESPGRPPPTAAERQELNRLLGGCGVASGGRGAGRETAILDDEEQPSVGGGLHLGMYPGHRPGLNRHCSCRQGYREPCTVPNGGYYRPEGTLERRRPPYGGYEGHPQGYTEAPMEKRRLCRSLSEGPYPYASELGKPANGDFGYRSAGYREVVILEDPGVPALCSCPACEEKLALPTAALYGLRLDREAGEGWASEAGKPLLHPVRPGHPLPLLVPACGHHHAPMPDYSCLKPSKVGEEGHEGCSYAMCPEGRYGHPGYPALVTYGYGGTVPSYCPVYGRAPHSCGSSSEGRGYPGPGAHSPRAGSVSPGSPPYLQSRKLGYEIPAEDGRDKYPLPGHLASTGGPLASTESPELSWRDGPSGHSTLPRSPRDAQCTASSELSGPSTPLHTSSPVQGKESTRRQDTRSPPLAATQRLSPGEALPPVVQGSTEKAPELLASSRPEPPDPSPFSQTSPPSSPNGWPQERSPGGHSSSANSRGPVPTTLPGLRHAPWRGPPDSPDGSPLTPVPTQMPWLVASPEPPPPQSSPTPAFPLAASYDANGPTQPPLPEKRHLSGSGQQPSPPARGTNQHVTFATPLPDVTQPPEHPLQENQSNVKFVQDTSKFWYKPHLSRDQAIALLKDKDPGAFLIRDSHSFQGAYGLALKVATPPPSAQPLKGDPSEQLVRHFLIETGPKGVKIKGCPTEPYFGSLSALVSQHSISPISLPCCLRIPSKDPLEETPEAPVPTNMSTAADLLRQGAACSVLYLTSVETESLTGPQAVARASSAALSCSPNPVPAIVHFKVSAQGITLTDNQRKLFFRRHYPVNSITFSSTDPQDRRWTNPDGTTSKIFGFVAKKPGSPWENVCHLFAELDPDQPANAIVTFITKVLLGQRK", "length": 1399, "header": "tr|A0A9J7JC62-1|A0A9J7JC62_CRIGR Isoform 1 of Tensin-2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Tns2 PE=3 SV=1 CANONICAL=A0A9J7JC62-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F6P9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JC62/entry#A0A9J7F6P9-1", "sequence": { "sequence": "MRSKAQSLISFQVTSSCQALPPAELRRNTAPVRRIEHLGSTKSLNHSKQRSTLPRSFSLDPLMERRWDLDLTYVTERILAAAFPARPDEQRHRGHLRELAHVLQSKHRDKYLLFNLSEKRHDLTRLNPKVQDFGWPELHAPPLDKLCSICKAMETWLSADPQHVVVLYCKGSKGKLGVIVSAYMHYSKISAGADQALATLTMRKFCEDKVATELQPSQRRYVSYFSGLLSGSIRMNSSPLFLHYVFVPMLPAFEPNTGFQPFLKIYQSMQLVYTSGVYRIAGPGPQPLCISLEPALLLKGDVMVTCYHKGGQGTDRTLVFRVQFHTCTMHGSRLTFPKDQLDEAWADERFPFQASVEFVFSSSPEKVKGNTPRNDPSVSVDYNTTEPAVRWDSYENFNQHHEDSVDGSLAHTRGPLDGSPYAQVQRVPHQTPPAPSPELPPPPMLSVSSDSGHSSTLTTEPTAESPGRPPPTAAERQELNRLLGGCGVASGGRGAGRETAILDDEEQPSVGGGLHLGMYPGHRPGLNRHCSCRQGYREPCTVPNGGYYRPEGTLERRRPPYGGYEGHPQGYTEAPMEKRRLCRSLSEGPYPYASELGKPANGDFGYRSAGYREVVILEDPGVPALCSCPACEEKLALPTAALYGLRLDREAGEGWASEAGKPLLHPVRPGHPLPLLVPACGHHHAPMPDYSCLKPSKVGEEGHEGCSYAMCPEGRYGHPGYPALVTYGYGGTVPSYCPVYGRAPHSCGSSSEGRGYPGPGAHSPRAGSVSPGSPPYLQSRKLGYEIPAEDGRDKYPLPGHLASTGGPLASTESPELSWRDGPSGHSTLPRSPRDAQCTASSELSGPSTPLHTSSPVQGKESTRRQDTRSPPLAATQRLSPGEALPPVVQGSTEKAPELLASSRPEPPDPSPFSQTSPPSSPNGWPQERSPGGHSSSANSRGPVPTTLPGLRHAPWRGPPDSPDGSPLTPVPTQMPWLVASPEPPPPQSSPTPAFPLAASYDANGPTQPPLPEKRHLSGSGQQPSPPARGTNQHVTFATPLPDVTQPPEHPLQENQSNVKFVQDTSKFWYKPHLSRDQAIALLKDKDPGAFLIRDSHSFQGAYGLALKVATPPPSAQPLKGDPSEQLVRHFLIETGPKGVKIKGCPTEPYFGSLSALVSQHSISPISLPCCLRIPSKDPLEETPEAPVPTNMSTAADLLRQGAACSVLYLTSVETESLTGPQAVARASSAALSCSPNPVPAIVHFKVSAQGITLTDNQRKLFFRRHYPVNSITFSSTDPQDRRWTNPDGTTSKIFGFVAKKPGSPWENVCHLFAELDPDQPANAIVTFITKVLLGQRK", "length": 1337, "header": "tr|A0A9J7F6P9-1|A0A9J7JC62_CRIGR Computationally mapped isoform of Tensin-2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Tns2 PE=3 SV=1 CANONICAL=A0A9J7JC62-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F7G6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JC62/entry#A0A9J7F7G6-1", "sequence": { "sequence": "MKSSGPMERLLRALGRDSSRATSRPRKAEPHSFREKVFRKKAPVCAVCKVTIDGTGVSCRVCKVATHRKCEAKVTSSCQALPPAELRRNTAPVRRIEHLGSTKSLNHSKQRSTLPRSFSLDPLMERRWDLDLTYVTERILAAAFPARPDEQRHRGHLRELAHVLQSKHRDKYLLFNLSEKRHDLTRLNPKVQDFGWPELHAPPLDKLCSICKAMETWLSADPQHVVVLYCKGSKGKLGVIVSAYMHYSKISAGADQALATLTMRKFCEDKVATELQPSQRRYVSYFSGLLSGSIRMNSSPLFLHYVFVPMLPAFEPNTGFQPFLKIYQSMQLVYTSGVYRIAGPGPQPLCISLEPALLLKGDVMVTCYHKGGQGTDRTLVFRVQFHTCTMHGSRLTFPKDQLDEAWADERFPFQASVEFVFSSSPEKVKGNTPRNDPSVSVDYNTTEPAVRWDSYENFNQHHEDSVDGSLAHTRGPLDGSPYAQVQRVPHQTPPAPSPELPPPPMLSVSSDSGHSSTLTTEPTAESPGRPPPTAAERQELNRLLGGCGVASGGRGAGRETAILDDEEQPSVGGGLHLGMYPGHRPGLNRHCSCRQGYREPCTVPNGGYYRPEGTLERRRPPYGGYEGHPQGYTEAPMEKRRLCRSLSEGPYPYASELGKPANGDFGYRSAGYREVVILEDPGVPALCSCPACEEKLALPTAALYGLRLDREAGEGWASEAGKPLLHPVRPGHPLPLLVPACGHHHAPMPDYSCLKPSKVGEEGHEGCSYAMCPEGRYGHPGYPALVTYGYGGTVPSYCPVYGRAPHSCGSSSEGRGYPGPGAHSPRAGSVSPGSPPYLQSRKLGYEIPAEDGRDKYPLPGHLASTGGPLASTESPELSWRDGPSGHSTLPRSPRDAQCTASSELSGPSTPLHTSSPVQGKESTRRQDTRSPPLAATQRLSPGEALPPVVQGSTEKAPELLASSRPEPPDPSPFSQTSPPSSPNGWPQERSPGGHSSSANSRGPVPTTLPGLRHAPWRGPPDSPDGSPLTPVPTQMPWLVASPEPPPPQSSPTPAFPLAASYDANGPTQPPLPEKRHLSGSGQQPSPPARGTNQHVTFATPLPDVTQPPEHPLQENQSNVKFVQDTSKFWYKPHLSRDQAIALLKDKDPGAFLIRDSHSFQGAYGLALKVATPPPSAQPLKGDPSEQLVRHFLIETGPKGVKIKGCPTEPYFGSLSALVSQHSISPISLPCCLRIPSKDPLEETPEAPVPTNMSTAADLLRQGAACSVLYLTSVETESLTGPQAVARASSAALSCSPNPVPAIVHFKVSAQGITLTDNQRKLFFRRHYPVNSITFSSTDPQDRRWTNPDGTTSKIFGFVAKKPGSPWENVCHLFAELDPDQPANAIVTFITKVLLGQRK", "length": 1398, "header": "tr|A0A9J7F7G6-1|A0A9J7JC62_CRIGR Computationally mapped isoform of Tensin-2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Tns2 PE=3 SV=1 CANONICAL=A0A9J7JC62-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FB69-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JC62/entry#A0A9J7FB69-1", "sequence": { "sequence": "MKPRKAEPHSFREKVFRKKAPVCAVCKVTIDGTGVSCRVCKVATHRKCEAKVTSSCQALPPAELRRNTAPVRRIEHLGSTKSLNHSKQRSTLPRSFSLDPLMERRWDLDLTYVTERILAAAFPARPDEQRHRGHLRELAHVLQSKHRDKYLLFNLSEKRHDLTRLNPKVQDFGWPELHAPPLDKLCSICKAMETWLSADPQHVVVLYCKGSKGKLGVIVSAYMHYSKISAGADQALATLTMRKFCEDKVATELQPSQRRYVSYFSGLLSGSIRMNSSPLFLHYVFVPMLPAFEPNTGFQPFLKIYQSMQLVYTSGVYRIAGPGPQPLCISLEPALLLKGDVMVTCYHKGGQGTDRTLVFRVQFHTCTMHGSRLTFPKDQLDEAWADERFPFQASVEFVFSSSPEKVKGNTPRNDPSVSVDYNTTEPAVRWDSYENFNQHHEDSVDGSLAHTRGPLDGSPYAQVQRVPHQTPPAPSPELPPPPMLSVSSDSGHSSTLTTEPTAESPGRPPPTAAERQELNRLLGGCGVASGGRGAGRETAILDDEEQPSVGGGLHLGMYPGHRPGLNRHCSCRQGYREPCTVPNGGYYRPEGTLERRRPPYGGYEGHPQGYTEAPMEKRRLCRSLSEGPYPYASELGKPANGDFGYRSAGYREVVILEDPGVPALCSCPACEEKLALPTAALYGLRLDREAGEGWASEAGKPLLHPVRPGHPLPLLVPACGHHHAPMPDYSCLKPSKVGEEGHEGCSYAMCPEGRYGHPGYPALVTYGYGGTVPSYCPVYGRAPHSCGSSSEGRGYPGPGAHSPRAGSVSPGSPPYLQSRKLGYEIPAEDGRDKYPLPGHLASTGGPLASTESPELSWRDGPSGHSTLPRSPRDAQCTASSELSGPSTPLHTSSPVQGKESTRRQDTRSPPLAATQRLSPGEALPPVVQGSTEKAPELLASSRPEPPDPSPFSQTSPPSSPNGWPQERSPGGHSSSANSRGPVPTTLPGLRHAPWRGPPDSPDGSPLTPVPTQMPWLVASPEPPPPQSSPTPAFPLAASYDANGPTQPPLPEKRHLSGSGQQPSPPARGTNQHVTFATPLPDVTQPPEHPLQENQSNVKFVQDTSKFWYKPHLSRDQAIALLKDKDPGAFLIRDSHSFQGAYGLALKVATPPPSAQPLKGDPSEQLVRHFLIETGPKGVKIKGCPTEPYFGSLSALVSQHSISPISLPCCLRIPSKDPLEETPEAPVPTNMSTAADLLRQGAACSVLYLTSVETESLTGPQAVARASSAALSCSPNPVPAIVHFKVSAQGITLTDNQRKLFFRRHYPVNSITFSSTDPQDRRWTNPDGTTSKIFGFVAKKPGSPWENVCHLFAELDPDQPANAIVTFITKVLLGQRK", "length": 1376, "header": "tr|A0A9J7FB69-1|A0A9J7JC62_CRIGR Computationally mapped isoform of Tensin-2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Tns2 PE=3 SV=1 CANONICAL=A0A9J7JC62-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FBN3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JC62/entry#A0A9J7FBN3-1", "sequence": { "sequence": "MERRWDLDLTYVTERILAAAFPARPDEQRHRGHLRELAHVLQSKHRDKYLLFNLSEKRHDLTRLNPKVQDFGWPELHAPPLDKLCSICKAMETWLSADPQHVVVLYCKGSKGKLGVIVSAYMHYSKISAGADQALATLTMRKFCEDKVATELQPSQRRYVSYFSGLLSGSIRMNSSPLFLHYVFVPMLPAFEPNTGFQPFLKIYQSMQLVYTSGVYRIAGPGPQPLCISLEPALLLKGDVMVTCYHKGGQGTDRTLVFRVQFHTCTMHGSRLTFPKDQLDEAWADERFPFQASVEFVFSSSPEKVKGNTPRNDPSVSVDYNTTEPAVRWDSYENFNQHHEDSVDGSLAHTRGPLDGSPYAQVQRVPHQTPPAPSPELPPPPMLSVSSDSGHSSTLTTEPTAESPGRPPPTAAERQELNRLLGGCGVASGGRGAGRETAILDDEEQPSVGGGLHLGMYPGHRPGLNRHCSCRQGYREPCTVPNGGYYRPEGTLERRRPPYGGYEGHPQGYTEAPMEKRRLCRSLSEGPYPYASELGKPANGDFGYRSAGYREVVILEDPGVPALCSCPACEEKLALPTAALYGLRLDREAGEGWASEAGKPLLHPVRPGHPLPLLVPACGHHHAPMPDYSCLKPSKVGEEGHEGCSYAMCPEGRYGHPGYPALVTYGYGGTVPSYCPVYGRAPHSCGSSSEGRGYPGPGAHSPRAGSVSPGSPPYLQSRKLGYEIPAEDGRDKYPLPGHLASTGGPLASTESPELSWRDGPSGHSTLPRSPRDAQCTASSELSGPSTPLHTSSPVQGKESTRRQDTRSPPLAATQRLSPGEALPPVVQGSTEKAPELLASSRPEPPDPSPFSQTSPPSSPNGWPQERSPGGHSSSANSRGPVPTTLPGLRHAPWRGPPDSPDGSPLTPVPTQMPWLVASPEPPPPQSSPTPAFPLAASYDANGPTQPPLPEKRHLSGSGQQPSPPARGTNQHVTFATPLPDVTQPPEHPLQENQSNVKFVQDTSKFWYKPHLSRDQAIALLKDKDPGAFLIRDSHSFQGAYGLALKVATPPPSAQPLKGDPSEQLVRHFLIETGPKGVKIKGCPTEPYFGSLSALVSQHSISPISLPCCLRIPSKDPLEETPEAPVPTNMSTAADLLRQGAACSVLYLTSVETESLTGPQAVARASSAALSCSPNPVPAIVHFKVSAQGITLTDNQRKLFFRRHYPVNSITFSSTDPQDRRWTNPDGTTSKIFGFVAKKPGSPWENVCHLFAELDPDQPANAIVTFITKVLLGQRK", "length": 1275, "header": "tr|A0A9J7FBN3-1|A0A9J7JC62_CRIGR Computationally mapped isoform of Tensin-2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Tns2 PE=3 SV=1 CANONICAL=A0A9J7JC62-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JC62-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JC62/entry#A0A9J7JC62-1", "sequence": { "sequence": "MGWPGGAPCCCPGPPRPQPSGRPPQPRKAEPHSFREKVFRKKAPVCAVCKVTIDGTGVSCRVCKVATHRKCEAKVTSSCQALPPAELRRNTAPVRRIEHLGSTKSLNHSKQRSTLPRSFSLDPLMERRWDLDLTYVTERILAAAFPARPDEQRHRGHLRELAHVLQSKHRDKYLLFNLSEKRHDLTRLNPKVQDFGWPELHAPPLDKLCSICKAMETWLSADPQHVVVLYCKGSKGKLGVIVSAYMHYSKISAGADQALATLTMRKFCEDKVATELQPSQRRYVSYFSGLLSGSIRMNSSPLFLHYVFVPMLPAFEPNTGFQPFLKIYQSMQLVYTSGVYRIAGPGPQPLCISLEPALLLKGDVMVTCYHKGGQGTDRTLVFRVQFHTCTMHGSRLTFPKDQLDEAWADERFPFQASVEFVFSSSPEKVKGNTPRNDPSVSVDYNTTEPAVRWDSYENFNQHHEDSVDGSLAHTRGPLDGSPYAQVQRVPHQTPPAPSPELPPPPMLSVSSDSGHSSTLTTEPTAESPGRPPPTAAERQELNRLLGGCGVASGGRGAGRETAILDDEEQPSVGGGLHLGMYPGHRPGLNRHCSCRQGYREPCTVPNGGYYRPEGTLERRRPPYGGYEGHPQGYTEAPMEKRRLCRSLSEGPYPYASELGKPANGDFGYRSAGYREVVILEDPGVPALCSCPACEEKLALPTAALYGLRLDREAGEGWASEAGKPLLHPVRPGHPLPLLVPACGHHHAPMPDYSCLKPSKVGEEGHEGCSYAMCPEGRYGHPGYPALVTYGYGGTVPSYCPVYGRAPHSCGSSSEGRGYPGPGAHSPRAGSVSPGSPPYLQSRKLGYEIPAEDGRDKYPLPGHLASTGGPLASTESPELSWRDGPSGHSTLPRSPRDAQCTASSELSGPSTPLHTSSPVQGKESTRRQDTRSPPLAATQRLSPGEALPPVVQGSTEKAPELLASSRPEPPDPSPFSQTSPPSSPNGWPQERSPGGHSSSANSRGPVPTTLPGLRHAPWRGPPDSPDGSPLTPVPTQMPWLVASPEPPPPQSSPTPAFPLAASYDANGPTQPPLPEKRHLSGSGQQPSPPARGTNQHVTFATPLPDVTQPPEHPLQENQSNVKFVQDTSKFWYKPHLSRDQAIALLKDKDPGAFLIRDSHSFQGAYGLALKVATPPPSAQPLKGDPSEQLVRHFLIETGPKGVKIKGCPTEPYFGSLSALVSQHSISPISLPCCLRIPSKDPLEETPEAPVPTNMSTAADLLRQGAACSVLYLTSVETESLTGPQAVARASSAALSCSPNPVPAIVHFKVSAQGITLTDNQRKLFFRRHYPVNSITFSSTDPQDRRWTNPDGTTSKIFGFVAKKPGSPWENVCHLFAELDPDQPANAIVTFITKVLLGQRK", "length": 1399, "header": "tr|A0A9J7JC62-1|A0A9J7JC62_CRIGR Isoform 1 of Tensin-2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Tns2 PE=3 SV=1 CANONICAL=A0A9J7JC62-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1053, "start_aa": "Thr", "end_pos": 1053, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1053", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 534, "start_aa": "Thr", "end_pos": 534, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr534", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "enzyme", "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F7G6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7G6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F7G6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7G6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100752687", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752687", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JC62", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JC62" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JC62", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JC62" } ], "pmid": "" }, { "name": "focal adhesion", "id": "GO:0005925", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005925", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JC62", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JC62" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JC62", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JC62" } ], "pmid": "" }, { "name": "lipid binding", "id": "GO:0008289", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008289", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JC62", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JC62" } ], "pmid": "" }, { "name": "protein tyrosine phosphatase activity", "id": "GO:0004725", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004725", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JC62", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JC62" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JC62", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JC62" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 107, "end_pos": 109, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1116, "end_pos": 1118, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1252, "end_pos": 1254, "annotation": "n_glycosylation_sequon" }, { "start_pos": 177, "end_pos": 179, "annotation": "n_glycosylation_sequon" }, { "start_pos": 298, "end_pos": 300, "annotation": "n_glycosylation_sequon" }, { "start_pos": 445, "end_pos": 447, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "10684", "name": "", "equation": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [ "G3H060-1", "G3H622-1", "G3H9Q0-1", "A0A8C2LH05-1", "G3HKY7-1", "G3GWQ6-1", "G3HBF6-1", "G3GRD1-1", "G3H8H2-1", "A0A9J7FG56-1", "A0A061IAM9-1", "A0A9J7GE78-1", "A0A9J7GZK0-1", "A0A061HX98-1", "A0A061HZS8-1", "A0A3L7HEJ5-1", "A0A8C2LYZ8-1", "A0A9J7JC04-1", "A0A8C2MQ28-1", "A0A3L7I231-1", "A0A9J7EY47-1", "A0A8C2LVB9-1", "A0A8C2MZ43-1", "A0A9J7G003-1", "A0A8C2QC02-1", "A0A9J7JD11-1", "A0A8C2QH88-1", "A0A9J7EXY7-1", "A0A9J7JC62-1", "A0A9J7FEN1-1", "A0A9J7FB56-1", "A0A9J7FEZ5-1", "A0A9J7FMB0-1", "A0A9J7FWJ6-1", "A0A9J7FWX7-1", "A0A9J7G1A0-1", "A0A9J7JTT7-1", "A0A9J7G7L1-1", "A0A9J7G7K2-1", "A0A9J7GNR2-1", "A0A9J7JU39-1", "A0A9J7KAX8-1", "A0A9J7GQG9-1", "A0A9J7GX92-1", "A0A9J7F2A0-1", "A0A9J7EZC9-1", "A0A9J7EZL1-1", "A0A9J7FIV0-1", "A0A8C2MFV5-1", "A0A8C2N2E5-1", "A0A8C2N686-1", "A0A8C2QCP2-1", "A0A3L7IA07-1", "A0A9J7FYL8-1", "A0A9J7G168-1", "A0A9J7GBQ5-1", "A0A9J7H7L7-1", "A0A9J7HBK7-1", "A0A9J7GQC8-1", "A0A9J7H152-1", "A0A9J7KDA7-1", "A0A9J7KDM0-1", "A0A9J7J766-1", "A0A9J7FKB3-1", "A0A3L7HAL2-1" ], "evidence": [ { "id": "10684", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/10684" } ] } ], "reaction_participants": [], "reaction_enzymes": [ { "uniprot_ac": "A0A061HX98", "gene_name": "Dusp9", "activity": [ { "ec_number": "3.1.3.16", "activity": "O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate.", "evidence": [ { "id": "A0A061HX98", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061HX98" } ] }, { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "A0A061HX98", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061HX98" } ] }, { "ec_number": "3.1.3.16", "activity": "", "evidence": [ { "id": "A0A061HX98", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061HX98" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "A0A061HX98", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061HX98" } ] } ] }, { "uniprot_ac": "A0A061HZS8", "gene_name": "Ptpn14", "activity": [ { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "A0A061HZS8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061HZS8" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "A0A061HZS8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061HZS8" } ] } ] }, { "uniprot_ac": "A0A061IAM9", "gene_name": "LOC100766206", "activity": [ { "ec_number": "3.1.3.2", "activity": "a phosphate monoester + H2O = an alcohol + phosphate.", "evidence": [ { "id": "A0A061IAM9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061IAM9" } ] }, { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "A0A061IAM9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061IAM9" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "A0A061IAM9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061IAM9" } ] }, { "ec_number": "3.1.3.2", "activity": "", "evidence": [ { "id": "A0A061IAM9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061IAM9" } ] } ] }, { "uniprot_ac": "A0A3L7HAL2", "gene_name": "Pgp", "activity": [ { "ec_number": "3.1.3.21", "activity": "sn-glycerol 1-phosphate + H2O = glycerol + phosphate.", "evidence": [ { "id": "A0A3L7HAL2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HAL2" } ] }, { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "A0A3L7HAL2", "database": 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"https://www.uniprot.org/uniprotkb/A0A3L7IA07" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "A0A3L7IA07", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7IA07" } ] } ] }, { "uniprot_ac": "A0A8C2LH05", "gene_name": "Acp1", "activity": [ { "ec_number": "3.1.3.2", "activity": "a phosphate monoester + H2O = an alcohol + phosphate.", "evidence": [ { "id": "A0A8C2LH05", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LH05" } ] }, { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "A0A8C2LH05", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LH05" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "A0A8C2LH05", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LH05" } ] }, { "ec_number": "3.1.3.2", "activity": "", "evidence": [ { "id": "A0A8C2LH05", "database": 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"Ptprf", "activity": [ { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "A0A8C2LYZ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LYZ8" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "A0A8C2LYZ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LYZ8" } ] } ] }, { "uniprot_ac": "A0A8C2MFV5", "gene_name": "LOC100758361", "activity": [ { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "A0A8C2MFV5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MFV5" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "A0A8C2MFV5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MFV5" } ] } ] }, { "uniprot_ac": "A0A8C2MQ28", "gene_name": "Ptprz1", "activity": [ { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "A0A8C2MQ28", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQ28" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "A0A8C2MQ28", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MQ28" } ] } ] }, { "uniprot_ac": "A0A8C2MZ43", "gene_name": "Ptprg", "activity": [ { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "A0A8C2MZ43", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZ43" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "A0A8C2MZ43", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MZ43" } ] } ] }, { "uniprot_ac": "A0A8C2N2E5", "gene_name": "Dusp15", "activity": [ { "ec_number": "3.1.3.16", "activity": "O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate.", "evidence": [ { "id": "A0A8C2N2E5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N2E5" } ] }, { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "A0A8C2N2E5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N2E5" } ] }, { "ec_number": "3.1.3.16", "activity": "", "evidence": [ { "id": "A0A8C2N2E5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N2E5" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "A0A8C2N2E5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N2E5" } ] } ] }, { "uniprot_ac": "A0A8C2N686", "gene_name": "Ptp4a1", "activity": [ { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "A0A8C2N686", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N686" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "A0A8C2N686", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N686" } ] } ] }, { "uniprot_ac": "A0A8C2QC02", "gene_name": "Ptpn6", "activity": [ { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "A0A8C2QC02", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QC02" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "A0A8C2QC02", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QC02" } ] } ] }, { "uniprot_ac": "A0A8C2QCP2", "gene_name": "Dusp28", "activity": [ { "ec_number": "3.1.3.16", "activity": "O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate.", "evidence": [ { "id": "A0A8C2QCP2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QCP2" } ] }, { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "A0A8C2QCP2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QCP2" } ] }, { "ec_number": "3.1.3.16", "activity": "", "evidence": [ { "id": "A0A8C2QCP2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QCP2" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "A0A8C2QCP2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QCP2" } ] } ] }, { "uniprot_ac": "A0A8C2QH88", "gene_name": "Dusp12", "activity": [ { "ec_number": "3.1.3.16", "activity": "O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate.", "evidence": [ { "id": "A0A8C2QH88", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QH88" } ] }, { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "A0A8C2QH88", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QH88" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "A0A8C2QH88", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QH88" } ] }, { "ec_number": "3.1.3.16", "activity": "", "evidence": [ { "id": "A0A8C2QH88", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QH88" } ] } ] }, { "uniprot_ac": "A0A9J7EXY7", "gene_name": "Ptpn13", "activity": [ { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "A0A9J7EXY7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EXY7" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "A0A9J7EXY7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EXY7" } ] } ] }, { "uniprot_ac": "A0A9J7EY47", "gene_name": "Cdkn3", "activity": [ { "ec_number": "3.1.3.16", "activity": "O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate.", "evidence": [ { "id": "A0A9J7EY47", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EY47" } ] }, { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "A0A9J7EY47", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EY47" } ] }, { "ec_number": "3.1.3.16", "activity": "", "evidence": [ { "id": "A0A9J7EY47", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EY47" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "A0A9J7EY47", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EY47" } ] } ] }, { "uniprot_ac": "A0A9J7EZC9", "gene_name": "Ptpn18", "activity": [ { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "A0A9J7EZC9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZC9" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "A0A9J7EZC9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZC9" } ] } ] }, { "uniprot_ac": "A0A9J7EZL1", "gene_name": "LOC113830718", "activity": [ { "ec_number": "3.1.3.16", "activity": "O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate.", "evidence": [ { "id": "A0A9J7EZL1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZL1" } ] }, { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "A0A9J7EZL1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZL1" } ] }, { "ec_number": "3.1.3.16", "activity": "", "evidence": [ { "id": "A0A9J7EZL1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZL1" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "A0A9J7EZL1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZL1" } ] } ] }, { "uniprot_ac": "A0A9J7F2A0", "gene_name": "Ptpn12", "activity": [ { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "A0A9J7F2A0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2A0" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "A0A9J7F2A0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2A0" } ] } ] }, { "uniprot_ac": "A0A9J7FB56", "gene_name": "Ptpru", "activity": [ { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "A0A9J7FB56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB56" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "A0A9J7FB56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB56" } ] } ] }, { "uniprot_ac": "A0A9J7FEN1", "gene_name": "Eya1", "activity": [ { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "A0A9J7FEN1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEN1" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "A0A9J7FEN1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEN1" } ] } ] }, { "uniprot_ac": "A0A9J7FEZ5", "gene_name": "Ptpn2", "activity": [ { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "A0A9J7FEZ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEZ5" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "A0A9J7FEZ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEZ5" } ] } ] }, { "uniprot_ac": "A0A9J7FG56", "gene_name": "Cdc25c", "activity": [ { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "A0A9J7FG56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FG56" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "A0A9J7FG56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FG56" } ] } ] }, { "uniprot_ac": "A0A9J7FIV0", "gene_name": "LOC100763249", "activity": [ { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "A0A9J7FIV0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIV0" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "A0A9J7FIV0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIV0" } ] } ] }, { "uniprot_ac": "A0A9J7FKB3", "gene_name": "Pten", "activity": [ { "ec_number": "3.1.3.67", "activity": "a 1,2-diacyl-sn-glycero-3-phospho-(1D-myo-inositol-3,4,5-trisphosphate) + H2O = a 1,2-diacyl-sn-glycero-3-phospho-(1D-myo-inositol-4,5-bisphosphate) + phosphate.", "evidence": [ { "id": "A0A9J7FKB3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKB3" } ] }, { "ec_number": "3.1.3.16", "activity": "O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate.", "evidence": [ { "id": "A0A9J7FKB3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKB3" } ] }, { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "A0A9J7FKB3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKB3" } ] }, { "ec_number": "3.1.3.16", "activity": "", "evidence": [ { "id": "A0A9J7FKB3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKB3" } ] }, { "ec_number": "3.1.3.67", "activity": "", "evidence": [ { "id": "A0A9J7FKB3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKB3" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "A0A9J7FKB3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKB3" } ] } ] }, { "uniprot_ac": "A0A9J7FMB0", "gene_name": "Dusp5", "activity": [ { "ec_number": "3.1.3.16", "activity": "O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate.", "evidence": [ { "id": "A0A9J7FMB0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMB0" } ] }, { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "A0A9J7FMB0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMB0" } ] }, { "ec_number": "3.1.3.16", "activity": "", "evidence": [ { "id": "A0A9J7FMB0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMB0" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "A0A9J7FMB0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMB0" } ] } ] }, { "uniprot_ac": "A0A9J7FWJ6", "gene_name": "Dusp7", "activity": [ { "ec_number": "3.1.3.16", "activity": "O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate.", "evidence": [ { "id": "A0A9J7FWJ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWJ6" } ] }, { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "A0A9J7FWJ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWJ6" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "A0A9J7FWJ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWJ6" } ] }, { "ec_number": "3.1.3.16", "activity": "", "evidence": [ { "id": "A0A9J7FWJ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWJ6" } ] } ] }, { "uniprot_ac": "A0A9J7FWX7", "gene_name": "LOC103158664", "activity": [ { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "A0A9J7FWX7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWX7" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "A0A9J7FWX7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWX7" } ] } ] }, { "uniprot_ac": "A0A9J7FYL8", "gene_name": "Ptpn11", "activity": [ { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "A0A9J7FYL8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYL8" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "A0A9J7FYL8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYL8" } ] } ] }, { "uniprot_ac": "A0A9J7G003", "gene_name": "Ptprs", "activity": [ { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "A0A9J7G003", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G003" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "A0A9J7G003", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G003" } ] } ] }, { "uniprot_ac": "A0A9J7G168", "gene_name": "LOC100762307", "activity": [ { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "A0A9J7G168", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G168" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "A0A9J7G168", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G168" } ] } ] }, { "uniprot_ac": "A0A9J7G1A0", "gene_name": "Ptpn4", "activity": [ { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "A0A9J7G1A0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1A0" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "A0A9J7G1A0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1A0" } ] } ] }, { "uniprot_ac": "A0A9J7G7K2", "gene_name": "Ptpn1", "activity": [ { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "A0A9J7G7K2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7K2" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "A0A9J7G7K2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7K2" } ] } ] }, { "uniprot_ac": "A0A9J7G7L1", "gene_name": "Ptprj", "activity": [ { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "A0A9J7G7L1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7L1" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "A0A9J7G7L1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G7L1" } ] } ] }, { "uniprot_ac": "A0A9J7GBQ5", "gene_name": "LOC100764354", "activity": [ { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "A0A9J7GBQ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBQ5" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "A0A9J7GBQ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GBQ5" } ] } ] }, { "uniprot_ac": "A0A9J7GE78", "gene_name": "Dusp3", "activity": [ { "ec_number": "3.1.3.16", "activity": "O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate.", "evidence": [ { "id": "A0A9J7GE78", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GE78" } ] }, { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "A0A9J7GE78", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GE78" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "A0A9J7GE78", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GE78" } ] }, { "ec_number": "3.1.3.16", "activity": "", "evidence": [ { "id": "A0A9J7GE78", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GE78" } ] } ] }, { "uniprot_ac": "A0A9J7GNR2", "gene_name": "Ptpn3", "activity": [ { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "A0A9J7GNR2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GNR2" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "A0A9J7GNR2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GNR2" } ] } ] }, { "uniprot_ac": "A0A9J7GQC8", "gene_name": "LOC100757114", "activity": [ { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "A0A9J7GQC8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GQC8" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "A0A9J7GQC8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GQC8" } ] } ] }, { "uniprot_ac": "A0A9J7GQG9", "gene_name": "Ptprd", "activity": [ { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "A0A9J7GQG9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GQG9" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "A0A9J7GQG9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GQG9" } ] } ] }, { "uniprot_ac": "A0A9J7GX92", "gene_name": "Ptpre", "activity": [ { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "A0A9J7GX92", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GX92" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "A0A9J7GX92", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GX92" } ] } ] }, { "uniprot_ac": "A0A9J7GZK0", "gene_name": "Ptprc", "activity": [ { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "A0A9J7GZK0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZK0" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "A0A9J7GZK0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZK0" } ] } ] }, { "uniprot_ac": "A0A9J7H152", "gene_name": "Ptprt", "activity": [ { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "A0A9J7H152", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H152" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "A0A9J7H152", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H152" } ] } ] }, { "uniprot_ac": "A0A9J7H7L7", "gene_name": "Ptprh", "activity": [ { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "A0A9J7H7L7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7L7" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "A0A9J7H7L7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7L7" } ] } ] }, { "uniprot_ac": "A0A9J7HBK7", "gene_name": "Ptpn22", "activity": [ { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "A0A9J7HBK7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBK7" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "A0A9J7HBK7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBK7" } ] } ] }, { "uniprot_ac": "A0A9J7J766", "gene_name": "Ptpn20", "activity": [ { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "A0A9J7J766", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J766" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "A0A9J7J766", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J766" } ] } ] }, { "uniprot_ac": "A0A9J7JC04", "gene_name": "Eya3", "activity": [ { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "A0A9J7JC04", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JC04" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "A0A9J7JC04", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JC04" } ] } ] }, { "uniprot_ac": "A0A9J7JC62", "gene_name": "Tns2", "activity": [ { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "A0A9J7JC62", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JC62" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "A0A9J7JC62", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JC62" } ] } ] }, { "uniprot_ac": "A0A9J7JD11", "gene_name": "Ptprm", "activity": [ { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "A0A9J7JD11", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD11" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "A0A9J7JD11", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD11" } ] } ] }, { "uniprot_ac": "A0A9J7JTT7", "gene_name": "Ptpra", "activity": [ { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "A0A9J7JTT7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTT7" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "A0A9J7JTT7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JTT7" } ] } ] }, { "uniprot_ac": "A0A9J7JU39", "gene_name": "Eya4", "activity": [ { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "A0A9J7JU39", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JU39" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "A0A9J7JU39", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JU39" } ] } ] }, { "uniprot_ac": "A0A9J7KAX8", "gene_name": "Eya2", "activity": [ { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "A0A9J7KAX8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAX8" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "A0A9J7KAX8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KAX8" } ] } ] }, { "uniprot_ac": "A0A9J7KDA7", "gene_name": "Ptprb", "activity": [ { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "A0A9J7KDA7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDA7" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "A0A9J7KDA7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDA7" } ] } ] }, { "uniprot_ac": "A0A9J7KDM0", "gene_name": "LOC100769324", "activity": [ { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "A0A9J7KDM0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDM0" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "A0A9J7KDM0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDM0" } ] } ] }, { "uniprot_ac": "G3GRD1", "gene_name": "Dusp10", "activity": [ { "ec_number": "3.1.3.16", "activity": "O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate.", "evidence": [ { "id": "G3GRD1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3GRD1" } ] }, { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "G3GRD1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3GRD1" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "G3GRD1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3GRD1" } ] }, { "ec_number": "3.1.3.16", "activity": "", "evidence": [ { "id": "G3GRD1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3GRD1" } ] } ] }, { "uniprot_ac": "G3GWQ6", "gene_name": "Dusp29", "activity": [ { "ec_number": "3.1.3.16", "activity": "O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate.", "evidence": [ { "id": "G3GWQ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3GWQ6" } ] }, { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "G3GWQ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3GWQ6" } ] }, { "ec_number": "3.1.3.16", "activity": "", "evidence": [ { "id": "G3GWQ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3GWQ6" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "G3GWQ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3GWQ6" } ] } ] }, { "uniprot_ac": "G3H060", "gene_name": "Dusp26", "activity": [ { "ec_number": "3.1.3.16", "activity": "O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate.", "evidence": [ { "id": "G3H060", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3H060" } ] }, { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "G3H060", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3H060" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "G3H060", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3H060" } ] }, { "ec_number": "3.1.3.16", "activity": "", "evidence": [ { "id": "G3H060", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3H060" } ] } ] }, { "uniprot_ac": "G3H622", "gene_name": "Dusp4", "activity": [ { "ec_number": "3.1.3.16", "activity": "O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate.", "evidence": [ { "id": "G3H622", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3H622" } ] }, { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "G3H622", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3H622" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "G3H622", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3H622" } ] }, { "ec_number": "3.1.3.16", "activity": "", "evidence": [ { "id": "G3H622", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3H622" } ] } ] }, { "uniprot_ac": "G3H8H2", "gene_name": "Dusp19", "activity": [ { "ec_number": "3.1.3.16", "activity": "O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate.", "evidence": [ { "id": "G3H8H2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3H8H2" } ] }, { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "G3H8H2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3H8H2" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "G3H8H2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3H8H2" } ] }, { "ec_number": "3.1.3.16", "activity": "", "evidence": [ { "id": "G3H8H2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3H8H2" } ] } ] }, { "uniprot_ac": "G3H9Q0", "gene_name": "Dusp1", "activity": [ { "ec_number": "3.1.3.16", "activity": "O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate.", "evidence": [ { "id": "G3H9Q0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3H9Q0" } ] }, { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "G3H9Q0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3H9Q0" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "G3H9Q0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3H9Q0" } ] }, { "ec_number": "3.1.3.16", "activity": "", "evidence": [ { "id": "G3H9Q0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3H9Q0" } ] } ] }, { "uniprot_ac": "G3HBF6", "gene_name": "Ptpn21", "activity": [ { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "G3HBF6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3HBF6" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "G3HBF6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3HBF6" } ] } ] }, { "uniprot_ac": "G3HKY7", "gene_name": "Dusp6", "activity": [ { "ec_number": "3.1.3.16", "activity": "O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate.", "evidence": [ { "id": "G3HKY7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3HKY7" } ] }, { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "G3HKY7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3HKY7" } ] }, { "ec_number": "3.1.3.16", "activity": "", "evidence": [ { "id": "G3HKY7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3HKY7" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "G3HKY7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3HKY7" } ] } ] } ], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JC62", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JC62" }, { "id": "PS51182", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51182" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2 tensin-type", "eco_id": "ECO_0000259", "start_pos": 299, "end_pos": 425, "start_aa": "Ser", "end_aa": "Ser", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7JC62", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JC62" }, { "id": "PS50081", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50081" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Phorbol-ester/DAG-type", "eco_id": "ECO_0000259", "start_pos": 31, "end_pos": 79, "start_aa": "Pro", "end_aa": "Cys", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7JC62", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JC62" }, { "id": "PS51181", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51181" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Phosphatase tensin-type", "eco_id": "ECO_0000259", "start_pos": 122, "end_pos": 294, "start_aa": "Asp", "end_aa": "Ser", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7JC62", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JC62" }, { "id": "PS50001", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50001" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SH2", "eco_id": "ECO_0000259", "start_pos": 1130, "end_pos": 1237, "start_aa": "Trp", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [ { "ec_number": "3.1.3.48", "ec_name": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "3.1.3.48", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/?query=ec:3.1.3.48" }, { "id": "3.1.3.48", "database": "BRENDA Enzymes", "url": "https://www.brenda-enzymes.org/enzyme.php?ecno=3.1.3.48" } ] } ], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 534, 1053 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 107, "end_pos": 109 }, { "start_pos": 1116, "end_pos": 1118 }, { "start_pos": 1252, "end_pos": 1254 }, { "start_pos": 177, "end_pos": 179 }, { "start_pos": 298, "end_pos": 300 }, { "start_pos": 445, "end_pos": 447 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027252366", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252366" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JC52", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JC52" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Larp4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JC52", "locus": {} } ], "crossref": [ { "id": "A0A9J7JC52", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JC52", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd08035", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08035", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd12707", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12707", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100775073", "url": "https://www.ncbi.nlm.nih.gov/gene/100775073", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006630", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006630", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034903", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034903", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036388", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036388", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036390", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036390", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045180", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045180", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058699", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058699", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100775073", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100775073", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JC52", "url": "https://www.orthodb.org/?gene=A0A9J7JC52", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22792", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22792", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22792:SF48", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22792:SF48", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05383", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05383", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF26088", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26088", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027252366", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252366", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QFK1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFK1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QFK1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFK1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F7C6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7C6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F7C6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7C6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FB31", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB31", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FB31-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB31-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JC52", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JC52", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JC52-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JC52-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLLFVEQVTSKGTGLNPNAKVWQEIPSGNPDGTAVTESSWHETAATSGSHPEGNTELSEDMCKEYEVMYSPTCETTRNTSDIEESADGMILGPEDLSYQIYDVSGESSSTISTEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFVPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVRPSHKRCIVILREIPETTPVEEVKALFKNENCPKVISCEFAHNSSWYITFQSDTDAQQAFKYLREEVKTFQGKPIMARIKAINTFFAKNGYRLMDSSMYTQPIQTPAQYPSPVFMQPVYNPHQQYSVYSIVPQSWSPSPAPYFETPLAPFPNGSFVNGFTSPGSYKTNATAVNISRPFQKNRVKPHFRSSSGSEHSTEGSVSLGDGPLSRSSSRNFLSERQNPTVTGNQEQTYLPKEAPILQMDQNGDFGRGRRTLFRGRRRREDDKIARPQPSTTEVKASTPKFDLLATNFPPLPGSSSRMPDELVLENRMSDVVKGVSKEKDSEDVRVSCPLPTEEEQADCASAQQLSLSPSPSSTAELPAISTTQPEKDQMEDSSLPKDVINQMTIPASSPATAKPSRADTASPCSSNVNTPTAVSLQEPRKLSYAEVCQKPPKEPSPVLVQPLRELRSNVVSPTRNEENGAPEKPVEKTHEKPETRASKDHSGFRGNTIPRGAAGKIREQRRQFSHRATPQGMTRRNGKEQFVPPRSPK", "length": 722, "header": "tr|A0A9J7JC52-1|A0A9J7JC52_CRIGR Isoform 1 of La-related protein 4 isoform X2 OS=Cricetulus griseus OX=10029 GN=Larp4 PE=4 SV=1 CANONICAL=A0A9J7JC52-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QFK1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JC52/entry#A0A8C2QFK1-1", "sequence": { "sequence": "MLLFVEVTSKGTGLNPNAKVWQEIPSGNPDGTAVTESSWHETAATSGSHPEGNTELSEDMCKEYEVMYSPTCETTRNTSDIEESADGMILGPEDLSYQIYDVSGESSSTISTEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFVPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVRPSHKRCIVILREIPETTPVEEVKALFKNENCPKVISCEFAHNSSWYITFQSDTDAQQAFKYLREEVKTFQGKPIMARIKAINTFFAKNGYRLMDSSMYTQPIQTPAQYPSPVFMQPVYNPHQQYSVYSIVPQSWSPSPAPYFETPLAPFPNGSFVNGFTSPGSYKTNATAVNISRPFQKNRVKPHFRSSSGSEHSTEGSVSLGDGPLSRSSSRNFLSERQNPTVTGNQEQTYLPKEAPILQMDQNGDFGRGRRTLFRGRRRREDDKIARPQPSTTEVKASTPKFDLLATNFPPLPGSSSRMPDELVLENRMSDVVKGVSKEKDSEDVRVSCPLPTEEEQADCASAQQLSLSPSPSSTAELPAISTTQPEKDQMEDSSLPKDVINQMTIPASSPATAKPSRADTASPCSSNVNTPTAVSLQEPRKLSYAEVCQKPPKEPSPVLVQPLRELRSNVVSPTRNEENGAPEKPVEKTHEKPETRASKDHSGFRGNTIPRGAAGKIREQRRQFSHRATPQGMTRRNGKEQFVPPRSPK", "length": 721, "header": "tr|A0A8C2QFK1-1|A0A9J7JC52_CRIGR Computationally mapped isoform of La-related protein 4 isoform X2 OS=Cricetulus griseus OX=10029 GN=Larp4 PE=4 SV=1 CANONICAL=A0A9J7JC52-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F7C6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JC52/entry#A0A9J7F7C6-1", "sequence": { "sequence": "MLLFVEQVTSKGTGLNPNAKVWQEIPSGNPDGTAVTESSWHETAATSGSHPEGNTELSEDMCKEYEVMYSPTCETTRNTSDIEESADGMILGPEDLSYQIYDVSGESSSTISTEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFVPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVRPSHKRCIVILREIPETTPVEEVKALFKNENCPKVISCEFAHNSSWYITFQSDTDAQQAFKYLREEVKTFQGKPIMARIKAINTFFAKNGYRLMDSSMYTQPIQTPAQYPSPVFMQPVYNPHQQYSVYSIVPQSWSPSPAPYFETPLAPFPNGSFVNGFTSPGSYKTNATAVNISRPFQKNRVKPHFRSSSGSEHSTEGSVSLGDGPLSRSSSRNFLSERQNPTVTGNQEQTYLPKEAPILQMDQNGDFGRGRRTLFRGRRRREDDKIADSEDVRVSCPLPTEEEQADCASAQQLSLSPSPSSTAELPAISTTQPEKDQMEDSSLPKDVINQMTIPASSPATAKPSRADTASPCSSNVNTPTAVSLQEPRKLSYAEVCQKPPKEPSPVLVQPLRELRSNVVSPTRNEENGAPEKPVEKTHEKPETRASKDHSGFRGNTIPRGAAGKIREQRRQFSHRATPQGMTRRNGKEQFVPPRSPK", "length": 668, "header": "tr|A0A9J7F7C6-1|A0A9J7JC52_CRIGR Computationally mapped isoform of La-related protein 4 isoform X2 OS=Cricetulus griseus OX=10029 GN=Larp4 PE=4 SV=1 CANONICAL=A0A9J7JC52-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FB31-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JC52/entry#A0A9J7FB31-1", "sequence": { "sequence": "MLLFVEQVTSKGTGLNPNAKVWQEIPSGNPDGTAVTESSWHETAATSGSHPEGNTELSEDMCKEYEVMYSPTCETTRNTSDIEESADGMILGPEDLSYQIYDVSGESSSTISTEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFVPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVRPSHKRCIVILREIPETTPVEEVKALFKNENCPKVISCEFAHNSSWYITFQSDTDAQQAFKYLREEVKTFQGKPIMARIKAINTFFAKNGYRLMDSSMYTQPIQTPAQYPSPVFMQPVYNPHQQYSVYSIVPQSWSPSPAPYFETPLAPFPNGSFVNGFTSPGSYKTNATAVNISRPFQKNRVKPHFRSSSGSEHSTEGSVSLGDGPLSRSSSRNFLSERQNPTVTGNQEQTYLPKEAPILQMDQNGDFGRGR", "length": 442, "header": "tr|A0A9J7FB31-1|A0A9J7JC52_CRIGR Computationally mapped isoform of La-related protein 4 isoform X2 OS=Cricetulus griseus OX=10029 GN=Larp4 PE=4 SV=1 CANONICAL=A0A9J7JC52-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JC52-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JC52/entry#A0A9J7JC52-1", "sequence": { "sequence": "MLLFVEQVTSKGTGLNPNAKVWQEIPSGNPDGTAVTESSWHETAATSGSHPEGNTELSEDMCKEYEVMYSPTCETTRNTSDIEESADGMILGPEDLSYQIYDVSGESSSTISTEDLKECLKKQLEFCFSRENLSKDLYLISQMDSDQFVPIWTVANMEEIKKLTTDPDLILEVLRSSPMVQVDEKGEKVRPSHKRCIVILREIPETTPVEEVKALFKNENCPKVISCEFAHNSSWYITFQSDTDAQQAFKYLREEVKTFQGKPIMARIKAINTFFAKNGYRLMDSSMYTQPIQTPAQYPSPVFMQPVYNPHQQYSVYSIVPQSWSPSPAPYFETPLAPFPNGSFVNGFTSPGSYKTNATAVNISRPFQKNRVKPHFRSSSGSEHSTEGSVSLGDGPLSRSSSRNFLSERQNPTVTGNQEQTYLPKEAPILQMDQNGDFGRGRRTLFRGRRRREDDKIARPQPSTTEVKASTPKFDLLATNFPPLPGSSSRMPDELVLENRMSDVVKGVSKEKDSEDVRVSCPLPTEEEQADCASAQQLSLSPSPSSTAELPAISTTQPEKDQMEDSSLPKDVINQMTIPASSPATAKPSRADTASPCSSNVNTPTAVSLQEPRKLSYAEVCQKPPKEPSPVLVQPLRELRSNVVSPTRNEENGAPEKPVEKTHEKPETRASKDHSGFRGNTIPRGAAGKIREQRRQFSHRATPQGMTRRNGKEQFVPPRSPK", "length": 722, "header": "tr|A0A9J7JC52-1|A0A9J7JC52_CRIGR Isoform 1 of La-related protein 4 isoform X2 OS=Cricetulus griseus OX=10029 GN=Larp4 PE=4 SV=1 CANONICAL=A0A9J7JC52-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QFK1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFK1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QFK1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QFK1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100775073", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100775073", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "positive regulation of translation", "id": "GO:0045727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045727", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JC52", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JC52" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "mRNA 3'-UTR binding", "id": "GO:0003730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003730", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JC52", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JC52" } ], "pmid": "" }, { "name": "poly(A) binding", "id": "GO:0008143", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008143", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JC52", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JC52" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "cytoplasmic stress granule", "id": "GO:0010494", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010494", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JC52", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JC52" } ], "pmid": "" }, { "name": "cytosolic small ribosomal subunit", "id": "GO:0022627", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0022627", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JC52", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JC52" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JC52", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JC52" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 132, "end_pos": 134, "annotation": "n_glycosylation_sequon" }, { "start_pos": 232, "end_pos": 234, "annotation": "n_glycosylation_sequon" }, { "start_pos": 341, "end_pos": 343, "annotation": "n_glycosylation_sequon" }, { "start_pos": 357, "end_pos": 359, "annotation": "n_glycosylation_sequon" }, { "start_pos": 362, "end_pos": 364, "annotation": "n_glycosylation_sequon" }, { "start_pos": 78, "end_pos": 80, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JC52", "database": "UniProtKB", "url": 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] }, { "uniprot_canonical_ac": "A0A9J7JDX6-1", "uniprot_ac": "A0A9J7JDX6", "uniprot_id": "A0A9J7JDX6_CRIGR", "mass": { "chemical_mass": 107184.0, "monoisotopic_mass": 107184.0 }, "refseq": { "ac": "XP_027264426", "name": "phosphofurin acidic cluster sorting protein 1 isoform X7", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027264426" }, "gene_names": [ { "name": "Pacs1", "type": "recommended", "evidence": [ { "id": "A0A9J7JDX6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDX6" } ] }, { "name": "Pacs1", "type": "synonym", "evidence": [ { "id": "XP_027264426", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027264426" } ] } ], "protein_names": [ { "name": "Phosphofurin acidic cluster sorting protein 1 isoform X7", "type": "synonym", "evidence": [ { "id": "A0A9J7JDX6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDX6/entry#names_and_taxonomy" } ] }, { "name": "phosphofurin acidic cluster sorting protein 1 isoform X7", "type": "synonym", "evidence": [ { "id": "XP_027264426", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027264426" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027264426", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027264426" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JDX6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDX6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Pacs1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDX6", "locus": {} } ], "crossref": [ { "id": "A0A9J7JDX6", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JDX6", "database": "AlphaFoldDB", "categories": [] }, { "id": "100768741", "url": "https://www.ncbi.nlm.nih.gov/gene/100768741", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019381", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019381", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057541", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057541", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100768741", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768741", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JDX6", "url": "https://www.orthodb.org/?gene=A0A9J7JDX6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13280", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13280", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13280:SF16", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13280:SF16", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10254", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10254", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25332", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25332", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027264426", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027264426", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QNG6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QNG6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QNG6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QNG6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FNK8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNK8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FNK8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNK8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FR20", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FR20", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FR20-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FR20-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JDX6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDX6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JDX6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDX6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JK41", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK41", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JK41-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK41-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JKS3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKS3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JKS3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKS3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAERGGAGGGPGGAGGGSGQRGSGVAQSPQQQPSQQPLPQQPTPPKLAQATSSSSSTSAAAASSSSSSTSTSMAVAVASGSAPPGGPGPGRTPAPVQMNLYATWEVDRSSSSCVPRLFSLTLKKLVMLKEMDKDLNSVVIAVKLQGSKRILRSNEIILPASGLVETELQLTFSLQYPHFLKRDANKLQIMLQRRKRYKNRTILGYKTLAVGLINMAEVMQHPNEGALVLGLHSNVKDVSVPVAEIKIYSLSSQPIDHEGIKSKLSDRSPDIDNYSEEEEESFSSEQEGSDDPLHGQDLFYEDEDLRKVKKTRRKLTSTSAITRQPNIKQKFVALLKRFKVSDEVGFGLEHVSREQIREVEEDLDELYDSLEMYNPSDSGPEMEETESILSTPKPKLKPFFEGMSQSSSQTEIGSLNSKGSLGKDSTSPVSRPMMELAALEKVKSTWIKSQDDSLTETDTLEITDQDMFGDVSTSLVVPEKVKTPMKSSKTDLQGSASPRYSREEGSRVVNPLPAAISKVEGTHTPRQKRSTPLKERQLSKPLSERTNSSDSERSPDLGHSTQIPRKVVYDQLNQILVSDAALPENVILVNTTDWQGQYVAELLQDQRKPVVCTCSIVEVQAVLSALLTRIQRYCNCNSSMPRPVKVAAVGSQSYLSSILRFFVKSLASKTPDWLGYMRFLIIPLGSHPVAKYLGSVDSRYSSTFLDSAWRDLFSRSEPPVSEPLDVVSRVMQYVNGAATTHQLPVAEAMLTCRHKFPDEDSYQKFIPFIGVVKVGLVEDSPSTAGDGDDSPVVSLTVPSTSPPSSSGLSRDATATPPSSPSMSSALAIVGSPNSPYGDVIGLQVDYWLGHPGDRRREGDKRDASSKNTLKSVFRSVQVSRLPHAGEAQLSGTMAMTVVTKEKNKKVPTIFLSKKPREKEVDSKSQVIEGISRLICSAKQQQTMLRVSIDGVEWSDIKFFQLAAQWPTHVKHFPVGLFSGSKTT", "length": 983, "header": "tr|A0A9J7JDX6-1|A0A9J7JDX6_CRIGR Isoform 1 of Phosphofurin acidic cluster sorting protein 1 isoform X7 OS=Cricetulus griseus OX=10029 GN=Pacs1 PE=3 SV=1 CANONICAL=A0A9J7JDX6-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QNG6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDX6/entry#A0A8C2QNG6-1", "sequence": { "sequence": "MAERGGAGGGPGGAGGGSGQRGSGVAQSPQQQPSQQPLPQQPTPPKLAQATSSSSSTSAAAASSSSSSTSTSMAVAVASGSAPPGGPGPGRTPAPVQMNLYATWEVDRSSSSCVPRLFSLTLKKLVMLKEMDKDLNSVVIAVKLQGSKRILRSNEIILPASGLVETELQLTFSLQYPHFLKRDANKLQIMLQRRKRYKNRTILGYKTLAVGLINMAEVMQHPNEGALVLGLHSNVKDVSVPVAEIKIYSLSSQPIDHEGIKSKLSDRSPDIDNYSEEEEESFSSEQEGSDDPLHGQDLFYEDEDLRKVKKTRRKLTSTSAITRQPNIKQKFVALLKRFKVSDEVGFGLEHVSREQIREVEEDLDELYDSLEMYNPSDSGPEMEETESILSTPKPKLKPFFEGMSQSSSQTEIGSLNSKGSLGKDSTSPMELAALEKVKSTWIKSQDDSLTETDTLEITDQDMFGDVSTSLVVPEKVKTPMKSSKTDLQGSASPSKVEGTHTPRQKRSTPLKERQLSKPLSERTNSSDSERSPDLGHSTQIPRKVVYDQLNQILVSDAALPENVILVNTTDWQGQYVAELLQDQRKPVVCTCSIVEVQAVLSALLTRIQRYCNCNSSMPRPVKVAAVGSQSYLSSILRFFVKSLASKTPDWLGYMRFLIIPLGSHPVAKYLGSVDSRYSSTFLDSAWRDLFSRSEPPVSEPLDVVSRVMQYVNGAATTHQLPVAEAMLTCRHKFPDEDSYQKFIPFIGVVKVGLVEDSPSTAGDGDDSPVVSLTVPSTSPPSSSGLSRDATATPPSSPSMSSALAIVGSPNSPYGDVIGLQVDYWLGHPGDRRREGDKRDASSKNTLKSVFRSVQVSRLPHAGEAQLSGTMAMTVVTKEKNKKVPTIFLSKKPREKEVDSKSQVIEGISRLICSAKQQQTMLRVSIDGVEWSDIKFFQLAAQWPTHVKHFPVGLFSGSKTT", "length": 960, "header": "tr|A0A8C2QNG6-1|A0A9J7JDX6_CRIGR Computationally mapped isoform of Phosphofurin acidic cluster sorting protein 1 isoform X7 OS=Cricetulus griseus OX=10029 GN=Pacs1 PE=3 SV=1 CANONICAL=A0A9J7JDX6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FNK8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDX6/entry#A0A9J7FNK8-1", "sequence": { "sequence": "MAERGGAGGGPGGAGGGSGQRGSGVAQSPQQQPSQQPLPQQPTPPKLAQATSSSSSTSAAAASSSSSSTSTSMAVAVASGSAPPGGPGPGRTPAPVQMNLYATWEVDRSSSSCVPRLFSLTLKKLVMLKEMDKDLNSVVIAVKLQGSKRILRSNEIILPASGLVETELQLTFSLQYPHFLKRDANKLQIMLQRRKRYKNRTILGYKTLAVGLINMAEVMQHPNEGALVLGLHSNVKDVSVPVAEIKIYSLSSQPIDHEGIKSKLSDRSPDIDNYSEEEEESFSSEQEGSDDPLHGQDLFYEDEDLRKVKKTRRKLTSTSAITRQPNIKQKFVALLKRFKVSDEVGFGLEHVSREQIREVEEDLDELYDSLEMYNPSDSGPEMEETESILSTPKPKLKPFFEGMSQSSSQTEIGSLNSKGSLGKDSTSPVSRPMMELAALEKVKSTWIKSQDDSLTETDTLEITDQDMFGDVSTSLVVPEKVKTPMKSSKTDLQGSASPRYSREEGSSKVEGTHTPRQKRSTPLKERQLSKPLSERTNSSDSERSPDLGHSTQIPRKVVYDQLNQILVSDAALPENVILVNTTDWQGQYVAELLQDQRKPVVCTCSIVEVQAVLSALLTRIQRYCNCNSSMPRPVKVAAVGSQSYLSSILRFFVKSLASKTPDWLGYMRFLIIPLGSHPVAKYLGSVDSRYSSTFLDSAWRDLFSRSEPPVSEPLDVVSRVMQYVNGAATTHQLPVAEAMLTCRHKFPDEDSYQKFIPFIGVVKVGLVEDSPSTAGDGDDSPVVSLTVPSTSPPSSSGLSRDATATPPSSPSMSSALAIVGSPNSPYGDVIGLQVDYWLGHPGDRRREGDKRDASSKNTLKSVFRSVQVSRLPHAGEAQLSGTMAMTVVTKEKNKKVPTIFLSKKPREKEVDSKSQVIEGISRLICSAKQQQTMLRVSIDGVEWSDIKFFQLAAQWPTHVKHFPVGLFSGSKTT", "length": 973, "header": "tr|A0A9J7FNK8-1|A0A9J7JDX6_CRIGR Computationally mapped isoform of Phosphofurin acidic cluster sorting protein 1 isoform X7 OS=Cricetulus griseus OX=10029 GN=Pacs1 PE=3 SV=1 CANONICAL=A0A9J7JDX6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FR20-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDX6/entry#A0A9J7FR20-1", "sequence": { "sequence": "MAERGGAGGGPGGAGGGSGQRGSGVAQSPQQQPSQQPLPQQPTPPKLAQATSSSSSTSAAAASSSSSSTSTSMAVAVASGSAPPGGPGPGRTPAPVQMNLYATWEVDRSSSSCVPRLFSLTLKKLVMLKEMDKDLNSVVIAVKLQGSKRILRSNEIILPASGLVETELQLTFSLQYPHFLKRDANKLQIMLQRRKRYKNRTILGYKTLAVGLINMAEVMQHPNEGALVLGLHSNVKDVSVPVAEIKIYSLSSQPIDHEGIKSKLSDRSPDIDNYSEEEEESFSSEQEGSDDPLHGQDLFYEDEDLRKVKKTRRKLTSTSAITRQPNIKQKFVALLKRFKVSDEVGFGLEHVSREQIREVEEDLDELYDSLEMYNPSDSGPEMEETESILSTPKPKLKPFFEGMSQSSSQTEIGSLNSKGSLGKDSTSPVSRPMMELAALEKVKSTWIKSQDDSLTETDTLEITDQDMFGDVSTSLVVPEKVKTPMKSSKTDLQGSASPSKVEGTHTPRQKRSTPLKERQLSKPLSERTNSSDSERSPDLGHSTQIPRKVVYDQLNQILVSDAALPENVILVNTTDWQGQYVAELLQDQRKPVVCTCSIVEVQAVLSALLTRIQRYCNCNSSMPRPVKVAAVGSQSYLSSILRFFVKSLASKTPDWLGYMRFLIIPLGSHPVAKYLGSVDSRYSSTFLDSAWRDLFSRSEPPVSEPLDVVSRVMQYVNGAATTHQLPVAEAMLTCRHKFPDEDSYQKFIPFIGVVKVGLVEDSPSTAGDGDDSPVVSLTVPSTSPPSSSGLSRDATATPPSSPSMSSALAIVGSPNSPYGDVIGLQVDYWLGHPGDRRREGDKRDASSKNTLKSVFRSVQVSRLPHAGEAQLSGTMAMTVVTKEKNKKVPTIFLSKKPREKEVDSKSQVIEGISRLICSAKQQQTMLRVSIDGVEWSDIKFFQLAAQWPTHVKHFPVGLFSGSKTT", "length": 965, "header": "tr|A0A9J7FR20-1|A0A9J7JDX6_CRIGR Computationally mapped isoform of Phosphofurin acidic cluster sorting protein 1 isoform X7 OS=Cricetulus griseus OX=10029 GN=Pacs1 PE=3 SV=1 CANONICAL=A0A9J7JDX6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JDX6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDX6/entry#A0A9J7JDX6-1", "sequence": { "sequence": "MAERGGAGGGPGGAGGGSGQRGSGVAQSPQQQPSQQPLPQQPTPPKLAQATSSSSSTSAAAASSSSSSTSTSMAVAVASGSAPPGGPGPGRTPAPVQMNLYATWEVDRSSSSCVPRLFSLTLKKLVMLKEMDKDLNSVVIAVKLQGSKRILRSNEIILPASGLVETELQLTFSLQYPHFLKRDANKLQIMLQRRKRYKNRTILGYKTLAVGLINMAEVMQHPNEGALVLGLHSNVKDVSVPVAEIKIYSLSSQPIDHEGIKSKLSDRSPDIDNYSEEEEESFSSEQEGSDDPLHGQDLFYEDEDLRKVKKTRRKLTSTSAITRQPNIKQKFVALLKRFKVSDEVGFGLEHVSREQIREVEEDLDELYDSLEMYNPSDSGPEMEETESILSTPKPKLKPFFEGMSQSSSQTEIGSLNSKGSLGKDSTSPVSRPMMELAALEKVKSTWIKSQDDSLTETDTLEITDQDMFGDVSTSLVVPEKVKTPMKSSKTDLQGSASPRYSREEGSRVVNPLPAAISKVEGTHTPRQKRSTPLKERQLSKPLSERTNSSDSERSPDLGHSTQIPRKVVYDQLNQILVSDAALPENVILVNTTDWQGQYVAELLQDQRKPVVCTCSIVEVQAVLSALLTRIQRYCNCNSSMPRPVKVAAVGSQSYLSSILRFFVKSLASKTPDWLGYMRFLIIPLGSHPVAKYLGSVDSRYSSTFLDSAWRDLFSRSEPPVSEPLDVVSRVMQYVNGAATTHQLPVAEAMLTCRHKFPDEDSYQKFIPFIGVVKVGLVEDSPSTAGDGDDSPVVSLTVPSTSPPSSSGLSRDATATPPSSPSMSSALAIVGSPNSPYGDVIGLQVDYWLGHPGDRRREGDKRDASSKNTLKSVFRSVQVSRLPHAGEAQLSGTMAMTVVTKEKNKKVPTIFLSKKPREKEVDSKSQVIEGISRLICSAKQQQTMLRVSIDGVEWSDIKFFQLAAQWPTHVKHFPVGLFSGSKTT", "length": 983, "header": "tr|A0A9J7JDX6-1|A0A9J7JDX6_CRIGR Isoform 1 of Phosphofurin acidic cluster sorting protein 1 isoform X7 OS=Cricetulus griseus OX=10029 GN=Pacs1 PE=3 SV=1 CANONICAL=A0A9J7JDX6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JK41-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDX6/entry#A0A9J7JK41-1", "sequence": { "sequence": "MAERGGAGGGPGGAGGGSGQRGSGVAQSPQQQPSQQPLPQQPTPPKLAQATSSSSSTSAAAASSSSSSTSTSMAVAVASGSAPPGGPGPGRTPAPVQMNLYATWEVDRSSSSCVPRLFSLTLKKLVMLKEMDKDLNSVVIAVKLQGSKRILRSNEIILPASGLVETELQLTFSLQYPHFLKRDANKLQIMLQRRKRYKNRTILGYKTLAVGLINMAEVMQHPNEGALVLGLHSNVKDVSVPVAEIKIYSLSSQPIDHEGIKSKLSDRSPDIDNYSEEEEESFSSEQEGSDDPLHGQDLFYEDEDLRKVKKTRRKLTSTSAITRQPNIKQKFVALLKRFKVSDEVGFGLEHVSREQIREVEEDLDELYDSLEMYNPSDSGPEMEETESILSTPKPKLKPFFEGMSQSSSQTEIGSLNSKGSLGKDSTSPVSRPMMELAALEKVKSTWIKSQDDSLTETDTLEITDQDMFGDVSTSLVVPEKVKTPMKSSKTDLQGSASPRVVNPLPAAISKVEGTHTPRQKRSTPLKERQLSKPLSERTNSSDSERSPDLGHSTQIPRKVVYDQLNQILVSDAALPENVILVNTTDWQGQYVAELLQDQRKPVVCTCSIVEVQAVLSALLTRIQRYCNCNSSMPRPVKVAAVGSQSYLSSILRFFVKSLASKTPDWLGYMRFLIIPLGSHPVAKYLGSVDSRYSSTFLDSAWRDLFSRSEPPVSEPLDVVSRVMQYVNGAATTHQLPVAEAMLTCRHKFPDEDSYQKFIPFIGVVKVGLVEDSPSTAGDGDDSPVVSLTVPSTSPPSSSGLSRDATATPPSSPSMSSALAIVGSPNSPYGDVIGLQVDYWLGHPGDRRREGDKRDASSKNTLKSVFRSVQVSRLPHAGEAQLSGTMAMTVVTKEKNKKVPTIFLSKKPREKEVDSKSQVIEGISRLICSAKQQQTMLRVSIDGVEWSDIKFFQLAAQWPTHVKHFPVGLFSGSKTT", "length": 975, "header": "tr|A0A9J7JK41-1|A0A9J7JDX6_CRIGR Computationally mapped isoform of Phosphofurin acidic cluster sorting protein 1 isoform X7 OS=Cricetulus griseus OX=10029 GN=Pacs1 PE=3 SV=1 CANONICAL=A0A9J7JDX6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JKS3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDX6/entry#A0A9J7JKS3-1", "sequence": { "sequence": "MAERGGAGGGPGGAGGGSGQRGSGVAQSPQQQPSQQPLPQQPTPPKLAQATSSSSSTSAAAASSSSSSTSTSMAVAVASGSAPPGGPGPGRTPAPVQMNLYATWEVDRSSSSCVPRLFSLTLKKLVMLKEMDKDLNSVVIAVKLQGSKRILRSNEIILPASGLVETELQLTFSLQYPHFLKRDANKLQIMLQRRKRYKNRTILGYKTLAVGLINMAEVMQHPNEGALVLGLHSNVKDVSVPVAEIKIYSLSSQPIDHEGIKSKLSDRSPDIDNYSEEEEESFSSEQEGSDDPLHGQDLFYEDEDLRKVKKTRRKLTSTSAITRQPNIKQKFVALLKRFKVSDEVGFGLEHVSREQIREVEEDLDELYDSLEMYNPSDSGPEMEETESILSTPKPKLKPFFEGMSQSSSQTEIGSLNSKGSLGKDSTSPMELAALEKVKSTWIKSQDDSLTETDTLEITDQDMFGDVSTSLVVPEKVKTPMKSSKTDLQGSASPRYSREEGSRVVNPLPAAISKVEGTHTPRQKRSTPLKERQLSKPLSERTNSSDSERSPDLGHSTQIPRKVVYDQLNQILVSDAALPENVILVNTTDWQGQYVAELLQDQRKPVVCTCSIVEVQAVLSALLTRIQRYCNCNSSMPRPVKVAAVGSQSYLSSILRFFVKSLASKTPDWLGYMRFLIIPLGSHPVAKYLGSVDSRYSSTFLDSAWRDLFSRSEPPVSEPLDVVSRVMQYVNGAATTHQLPVAEAMLTCRHKFPDEDSYQKFIPFIGVVKVGLVEDSPSTAGDGDDSPVVSLTVPSTSPPSSSGLSRDATATPPSSPSMSSALAIVGSPNSPYGDVIGLQVDYWLGHPGDRRREGDKRDASSKNTLKSVFRSVQVSRLPHAGEAQLSGTMAMTVVTKEKNKKVPTIFLSKKPREKEVDSKSQVIEGISRLICSAKQQQTMLRVSIDGVEWSDIKFFQLAAQWPTHVKHFPVGLFSGSKTT", "length": 978, "header": "tr|A0A9J7JKS3-1|A0A9J7JDX6_CRIGR Computationally mapped isoform of Phosphofurin acidic cluster sorting protein 1 isoform X7 OS=Cricetulus griseus OX=10029 GN=Pacs1 PE=3 SV=1 CANONICAL=A0A9J7JDX6-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 43, "start_aa": "Thr", "end_pos": 43, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr43", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QNG6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QNG6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QNG6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QNG6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100768741", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768741", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "lymphocyte homeostasis", "id": "GO:0002260", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0002260", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JDX6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDX6" } ], "pmid": "" }, { "name": "protein localization to plasma membrane", "id": "GO:0072659", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0072659", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JDX6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDX6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "transmembrane transporter binding", "id": "GO:0044325", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0044325", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JDX6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDX6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "COPI-coated vesicle", "id": "GO:0030137", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030137", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JDX6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDX6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 199, "end_pos": 201, "annotation": "n_glycosylation_sequon" }, { "start_pos": 273, "end_pos": 275, "annotation": "n_glycosylation_sequon" }, { "start_pos": 547, "end_pos": 549, "annotation": "n_glycosylation_sequon" }, { "start_pos": 590, "end_pos": 592, "annotation": "n_glycosylation_sequon" }, { "start_pos": 637, "end_pos": 639, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JDX6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDX6" }, { "id": "PF10254", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10254" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Phosphofurin acidic cluster sorting protein 1/2 C-terminal", "eco_id": "ECO_0000259", "start_pos": 568, "end_pos": 978, "start_aa": "Val", "end_aa": "Ser", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7JDX6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDX6" }, { "id": "PF25332", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25332" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Phosphofurin acidic cluster sorting protein 1/2 N-terminal C2", "eco_id": "ECO_0000259", "start_pos": 96, "end_pos": 256, "start_aa": "Val", "end_aa": "Asp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 43 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 199, "end_pos": 201 }, { "start_pos": 273, "end_pos": 275 }, { "start_pos": 547, "end_pos": 549 }, { "start_pos": 590, "end_pos": 592 }, { "start_pos": 637, "end_pos": 639 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", 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##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027243997", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243997" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J6E6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6E6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Urgcp", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6E6", "locus": {} } ], "crossref": [ { "id": "A0A9J7J6E6", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7J6E6", "database": "AlphaFoldDB", "categories": [] }, { "id": "100768349", "url": "https://www.ncbi.nlm.nih.gov/gene/100768349", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006073", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006073", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR030383", "url": "https://www.ebi.ac.uk/interpro/entry/IPR030383", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057365", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057365", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100768349", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768349", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7J6E6", "url": "https://www.orthodb.org/?gene=A0A9J7J6E6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22796", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22796", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22796:SF13", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22796:SF13", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF25496", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25496", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25683", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25683", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF26773", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26773", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027243997", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243997", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7EW88", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EW88", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EW88-1", "url": 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"MASPGIEVELLVKGHSDLGEVPPEVKPSDSQTSVAIADLEWREMEGDDCGFHYGDGTNEAQDNDFPTVERSRLQEMLSLLGLETYQVQKLTLQDSLQISFDSMKNCAPQVPKDLPWHFLRKLQALNAEARNTTMVLDMPPDAWPAEKESQMEEEMIYWDPAEDIATDDIYSFSELPVPDTPVNPLDLLCALLLSSDTFLQQEVLLKMSLCQFALPLVLPDSENHYHTFLLWALRGVMRTCCFQPPRGLRSFREDSVVLSRLPTFAFVRMDVSSNSKSQLLNAILSPARRQWDCFWHRDLNLGTNPREISDGLVEISWFFPSGKEDLDVFPEPVAFLNLRGDIGSHWLQFKLLTEVSSAVFILTDNISKKEYKLLYSMKESTTKYYFILSPYRGKRNTNLRFLNRLIPVLKIDHSHVLVKVSSTDSESFVRRIRAIICSVARSPCRRVSVEDMAHAARKLGLRIDEDLEECQKAKDRMEKIIRKIKDVDAYKRDELRLQGDPARKAAQVEREFCQLQWVSDPPEKHRAELRRRVLELRVQQNGQELSSGVQEFILGISSPSLGERQYFLRWMEWGLARLGPPRPRQPPETLLTLRPKLGGASDLNEPLWPEPLGVEHFLREMGQFYEAESCLVEAGRLSAAQRRFAHFPGLAVELLLGGLPLELVDGATLSIPVRWVTGLLKELHVRLDRRSRLVVLSALGVPGTGKSTLLNTMFGLRFATGRSCSPRGSFMQLLPVAEGFSQDLGCDQILVIDSGGLISGALASAGDRFEQEASLATLLMGLSNVTVVSLAEMKDIPPAILHAFLRLEKTGHMPNYQFVYQNLHDLSVPSPKMRDRRQPLDPPSDLSRAATHMEKQGGSFRTLAGLAERQHVWHIPALWHGAPPMASVSLGYSEAIFELKRCLLENIRNGLSNQNKNIQQLIELVRRL", "length": 928, "header": "tr|A0A9J7J6E6-1|A0A9J7J6E6_CRIGR Isoform 1 of Up-regulator of cell proliferation OS=Cricetulus griseus OX=10029 GN=Urgcp PE=3 SV=1 CANONICAL=A0A9J7J6E6-1" }, "isoforms": [ { "isoform_ac": "A0A9J7EW88-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6E6/entry#A0A9J7EW88-1", "sequence": { "sequence": "MEGDDCGFHYGDGTNEAQDNDFPTVERSRLQEMLSLLGLETYQVQKLTLQDSLQISFDSMKNCAPQVPKDLPWHFLRKLQALNAEARNTTMVLDMPPDAWPAEKESQMEEEMIYWDPAEDIATDDIYSFSELPVPDTPVNPLDLLCALLLSSDTFLQQEVLLKMSLCQFALPLVLPDSENHYHTFLLWALRGVMRTCCFQPPRGLRSFREDSVVLSRLPTFAFVRMDVSSNSKSQLLNAILSPARRQWDCFWHRDLNLGTNPREISDGLVEISWFFPSGKEDLDVFPEPVAFLNLRGDIGSHWLQFKLLTEVSSAVFILTDNISKKEYKLLYSMKESTTKYYFILSPYRGKRNTNLRFLNRLIPVLKIDHSHVLVKVSSTDSESFVRRIRAIICSVARSPCRRVSVEDMAHAARKLGLRIDEDLEECQKAKDRMEKIIRKIKDVDAYKRDELRLQGDPARKAAQVEREFCQLQWVSDPPEKHRAELRRRVLELRVQQNGQELSSGVQEFILGISSPSLGERQYFLRWMEWGLARLGPPRPRQPPETLLTLRPKLGGASDLNEPLWPEPLGVEHFLREMGQFYEAESCLVEAGRLSAAQRRFAHFPGLAVELLLGGLPLELVDGATLSIPVRWVTGLLKELHVRLDRRSRLVVLSALGVPGTGKSTLLNTMFGLRFATGRSCSPRGSFMQLLPVAEGFSQDLGCDQILVIDSGGLISGALASAGDRFEQEASLATLLMGLSNVTVVSLAEMKDIPPAILHAFLRLEKTGHMPNYQFVYQNLHDLSVPSPKMRDRRQPLDPPSDLSRAATHMEKQGGSFRTLAGLAERQHVWHIPALWHGAPPMASVSLGYSEAIFELKRCLLENIRNGLSNQNKNIQQLIELVRRL", "length": 885, "header": "tr|A0A9J7EW88-1|A0A9J7J6E6_CRIGR Computationally mapped isoform of Up-regulator of cell proliferation OS=Cricetulus griseus OX=10029 GN=Urgcp PE=3 SV=1 CANONICAL=A0A9J7J6E6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J6E6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6E6/entry#A0A9J7J6E6-1", "sequence": { "sequence": "MASPGIEVELLVKGHSDLGEVPPEVKPSDSQTSVAIADLEWREMEGDDCGFHYGDGTNEAQDNDFPTVERSRLQEMLSLLGLETYQVQKLTLQDSLQISFDSMKNCAPQVPKDLPWHFLRKLQALNAEARNTTMVLDMPPDAWPAEKESQMEEEMIYWDPAEDIATDDIYSFSELPVPDTPVNPLDLLCALLLSSDTFLQQEVLLKMSLCQFALPLVLPDSENHYHTFLLWALRGVMRTCCFQPPRGLRSFREDSVVLSRLPTFAFVRMDVSSNSKSQLLNAILSPARRQWDCFWHRDLNLGTNPREISDGLVEISWFFPSGKEDLDVFPEPVAFLNLRGDIGSHWLQFKLLTEVSSAVFILTDNISKKEYKLLYSMKESTTKYYFILSPYRGKRNTNLRFLNRLIPVLKIDHSHVLVKVSSTDSESFVRRIRAIICSVARSPCRRVSVEDMAHAARKLGLRIDEDLEECQKAKDRMEKIIRKIKDVDAYKRDELRLQGDPARKAAQVEREFCQLQWVSDPPEKHRAELRRRVLELRVQQNGQELSSGVQEFILGISSPSLGERQYFLRWMEWGLARLGPPRPRQPPETLLTLRPKLGGASDLNEPLWPEPLGVEHFLREMGQFYEAESCLVEAGRLSAAQRRFAHFPGLAVELLLGGLPLELVDGATLSIPVRWVTGLLKELHVRLDRRSRLVVLSALGVPGTGKSTLLNTMFGLRFATGRSCSPRGSFMQLLPVAEGFSQDLGCDQILVIDSGGLISGALASAGDRFEQEASLATLLMGLSNVTVVSLAEMKDIPPAILHAFLRLEKTGHMPNYQFVYQNLHDLSVPSPKMRDRRQPLDPPSDLSRAATHMEKQGGSFRTLAGLAERQHVWHIPALWHGAPPMASVSLGYSEAIFELKRCLLENIRNGLSNQNKNIQQLIELVRRL", "length": 928, "header": "tr|A0A9J7J6E6-1|A0A9J7J6E6_CRIGR Isoform 1 of Up-regulator of cell proliferation OS=Cricetulus griseus OX=10029 GN=Urgcp PE=3 SV=1 CANONICAL=A0A9J7J6E6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EW88", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EW88" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EW88", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EW88" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100768349", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768349", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J6E6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6E6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J6E6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6E6" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J6E6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6E6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 131, "end_pos": 133, "annotation": "n_glycosylation_sequon" }, { "start_pos": 365, "end_pos": 367, "annotation": "n_glycosylation_sequon" }, { "start_pos": 784, "end_pos": 786, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7J6E6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6E6" }, { "id": "PS51717", "database": "PROSITE", "url": 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"n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027246454.1. 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This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027254559", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027254559" } ] }, { "annotation": "Plays a role in the regulation of cytoplasmic stress granules (SGs) turnover. SGs are dynamic and transient cytoplasmic ribonucleoprotein assemblies important for cellular protein homeostasis when protein production is suspended after acute exogenous stress. Associates with SGs and is involved in the efficient and specific arsenite-induced clearance process of SGs through the recruitment of the ubiquitin-selective ATPase VCP and the 26S proteasome. This process requires both complexes for efficient degradation of damaged ubiquitinated SG proteins during recovery from arsenite stress, and hence avoiding aberrant cytoplasmic SGs degradation via autophagy.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FA77", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA77#function" }, { "database": "UniProtKB", "id": "ARBA00053083", "url": "https://www.uniprot.org/uniprotkb/ARBA00053083#function" }, { "database": "UniProtKB", "id": "A0A8C2M545", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M545#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JDI8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDI8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Zfand1", 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"MSPVDCHSSTLSGVRYHASGMTSLPAPPTRKGLFFVAVQWLIRHQTAPFLLCHSSLMNFLPFVCDGCSGIFCLEHRSKDSHGCPEVNIIKERPKTDEHKSYSCSFKDCPEVELVAVICPYCEKNFCLRHRHQSDHGCEKLELPKPRMAATQKLVKDIIDSKTGGAVNKGRKGAKTSGTAAKVALMKLKMHADGDKSLPQTERIYFQVYLPKGSKEKSKAMFFCLRWSIGKVVDFAASLASLRNENNKLTAKKLRLCHIPSGEALPLDHTLEAWINKEDHPLYNGGNVILEYLNDEEQFLKNVDSYLE", "length": 307, "header": "tr|A0A9J7JDI8-1|A0A9J7JDI8_CRIGR Isoform 1 of AN1-type zinc finger protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Zfand1 PE=4 SV=1 CANONICAL=A0A9J7JDI8-1" }, "isoforms": [ { "isoform_ac": "A0A8C2M545-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDI8/entry#A0A8C2M545-1", "sequence": { "sequence": "MAELDIGQHCQVQHCRQRDFLPFVCDGCSGIFCLEHRSKDSHGCPEVNIIKERPKTDEHKSYSCSFKDCPEVELVAVICPYCEKNFCLRHRHQSDHGCEKLELPKPRMAATQKLVKDIIDSKTGGAVNKGRKGAKTSGTAAKVALMKLKMHADGDKSLPQTERIYFQVYLPKGSKEKSKAMFFCLRWSIGKVVDFAASLASLRNENNKLTAKKLRLCHIPSGEALPLDHTLEAWINKEDHPLYNGGNVILEYLNDEEQFLKNVDSYLE", "length": 268, "header": "tr|A0A8C2M545-1|A0A9J7JDI8_CRIGR Computationally mapped isoform of AN1-type zinc finger protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Zfand1 PE=4 SV=1 CANONICAL=A0A9J7JDI8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FA77-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDI8/entry#A0A9J7FA77-1", "sequence": { "sequence": "MAELDIGQHCQVQHCRQRDFLPFVCDGCSGIFCLEHRSKDSHGCPEVNIIKERPKTDEHKSYSCSFKDCPEVELVAVICPYCEKNFCLRHRHQSDHGCEKLELPKPRMAATQKLVKDIIDSKTGGAVNKGRKGAKTSGTAAKVALMKLKMHADGDKSLPQTERIYFQVYLPKGSKEKSKAMFFCLRWSIGKVVDFAASLASLRNENNKLTAKQKLRLCHIPSGEALPLDHTLEAWINKEDHPLYNGGNVILEYLNDEEQFLKNVDSYLE", "length": 269, "header": "tr|A0A9J7FA77-1|A0A9J7JDI8_CRIGR Computationally mapped isoform of AN1-type zinc finger protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Zfand1 PE=4 SV=1 CANONICAL=A0A9J7JDI8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JDI8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDI8/entry#A0A9J7JDI8-1", "sequence": { "sequence": "MSPVDCHSSTLSGVRYHASGMTSLPAPPTRKGLFFVAVQWLIRHQTAPFLLCHSSLMNFLPFVCDGCSGIFCLEHRSKDSHGCPEVNIIKERPKTDEHKSYSCSFKDCPEVELVAVICPYCEKNFCLRHRHQSDHGCEKLELPKPRMAATQKLVKDIIDSKTGGAVNKGRKGAKTSGTAAKVALMKLKMHADGDKSLPQTERIYFQVYLPKGSKEKSKAMFFCLRWSIGKVVDFAASLASLRNENNKLTAKKLRLCHIPSGEALPLDHTLEAWINKEDHPLYNGGNVILEYLNDEEQFLKNVDSYLE", "length": 307, "header": "tr|A0A9J7JDI8-1|A0A9J7JDI8_CRIGR Isoform 1 of AN1-type zinc finger protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Zfand1 PE=4 SV=1 CANONICAL=A0A9J7JDI8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FA77", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FA77" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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"url": "https://www.uniprot.org/uniprotkb/A0A9J7JDI8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasmic stress granule", "id": "GO:0010494", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010494", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JDI8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDI8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "stress granule disassembly", "id": "GO:0035617", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035617", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JDI8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDI8" } ], "pmid": "" }, { "name": "cellular response to arsenite ion", "id": "GO:1903843", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1903843", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JDI8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDI8" } ], "pmid": "" }, { "name": "positive regulation of 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7J663-1", "uniprot_ac": "A0A9J7J663", "uniprot_id": "A0A9J7J663_CRIGR", "mass": { "chemical_mass": 57375.0, "monoisotopic_mass": 57375.0 }, "refseq": { "ac": "XP_027251008", "name": "serine/arginine-rich splicing factor 11 isoform X6", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027251008" }, "gene_names": [ { "name": "Srsf11", "type": "recommended", "evidence": [ { "id": "A0A9J7J663", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J663" } ] }, { "name": "Srsf11", "type": "synonym", "evidence": [ { "id": "XP_027251008", "database": "RefSeq", "url": 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by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027251008", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027251008" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J663", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J663" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Srsf11", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J663", "locus": {} } ], "crossref": [ { "id": "A0A9J7J663", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7J663", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd12518", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12518", "database": "CDD", "categories": [ "Protein Classification" ] 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"categories": [ "Protein Classification" ] }, { "id": "PTHR32343", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32343", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR32343:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR32343:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00076", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00076", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027251008", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027251008", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A061IJ41", "url": "https://www.uniprot.org/uniprotkb/A0A061IJ41", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A061IJ41-1", "url": "https://www.uniprot.org/uniprotkb/A0A061IJ41-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F5I5", "url": 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"database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSPPAPGAVGPTSSSVALTSLALRRNFFREAARAMSSTAVVPSAAGPGPGPSGGPGGGTEVIQVTNVSPSASSEQMRTLFGFLGKIDELRLFPPDDSPLPVSSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPDETKALSLLAPANAVAGLLPGGGLLPTPNPLTQIGAVPLAALGAPALDPALAALGLPGTNLNSQSLAADQLLKLMSTVDPKLNHVAAGLVSPSLKSDTSSKEIEEAMKRVREAQSLISAAIEPDKKEEKRRHSRSRSRSRRRRTPSSSRHRRSRSRSRRRSHSKSRSRRRSKSPRRRRSHSRERGRRSRSTSKARDKKKEDKEKKRSKTPPKSYSTARRSRSASSLHVCDSRERRRRRSRSGTRSPKKPRSPKRKLSRSPSPRRHKKEKKKDKDKERSRDERERSTSKKKRSKDKEKERERKSESDKDVKQVTRDYDEEEQGYDSEKEKKEEKRPTEAVSPKTKECSVEKGVGDLRESKVNGDDHHEEDMDMSD", "length": 518, "header": "tr|A0A9J7J663-1|A0A9J7J663_CRIGR Isoform 1 of Serine/arginine-rich splicing factor 11 isoform X6 OS=Cricetulus griseus OX=10029 GN=Srsf11 PE=4 SV=1 CANONICAL=A0A9J7J663-1" }, "isoforms": [ { "isoform_ac": "A0A061IJ41-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J663/entry#A0A061IJ41-1", "sequence": { "sequence": "MSSTAVVPSAAGPGPGPSGGPGGGTEVIQVTNVSPSASSEQMRTLFGFLGKIDELRLFPPDDSPLPVSSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPDETKALSLLAPANAVAGLLPGGGLLPTPNPLTQIGAVPLAALGAPALDPALAALGLPGTNLNSQSLAADQLLKLMSTVDPKLNHVAAGLVSPSLKSDTSSKEIEEAMKRVREAQSLISAAIEPDKKEEKRRHSRSRSRSRRRRTPSSSRHRRSRSRSRRRSHSKSRSRRRSKSPRRRRSHSRERGRRSRSTSKARDKKKEDKEKKRSKTPPKSYSTARRSRSASSLHVCDSRERRRRRSRSGTRSPKKPRSPKRKLSRSPSPRRHKKEKKKDKDKERSRDERERSTSKKKRSKDKEKERERKSESDKDVKQVTRDYDEEEQGYDSEKEKKEEKRPTEAVSPKTKECSVEKGVGDLRESKVNGDDHHEEDMDMSD", "length": 483, "header": "tr|A0A061IJ41-1|A0A9J7J663_CRIGR Computationally mapped isoform of Serine/arginine-rich splicing factor 11 isoform X6 OS=Cricetulus griseus OX=10029 GN=Srsf11 PE=4 SV=1 CANONICAL=A0A9J7J663-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F5I5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J663/entry#A0A9J7F5I5-1", "sequence": { "sequence": "MSSPPAPGAVGPTSSSVALTSLALRRNFFREAARAMSSTAVVPSAAGPGPGPSGGPGGGTEVIQVTNVSPSASSEQMRTLFGFLGKIDELRLFPPDDSPLPVSSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPDETKALSLLAPANAVAGLLPGGGLLPTPNPLTQIGAVPLAALGAPALDPALAALGLPGTNLNSQSLAADQLLKLMSTVDPKLNHVAAGLVSPSLKSDTSSKEIEEAMKRVREAQSLISAAIEPDKKEEKRRHSRSRSRSRRRRTPSSSRHRRSRSRSRRRSHSKSRSRRRSKSPRRRRSHSRERGRRSRSTSKARDKKKEDKEKKRSKTPPKSYSTARRSRSASRERRRRRSRSGTRSPKKPRSPKRKLSRSPSPRRHKKEKKKDKDKERSRDERERSTSKKKRSKDKEKERERKSESDKDVKVTRDYDEEEQGYDSEKEKKEEKRPTEAVSPKTKECSVEKGVGDLRESKVNGDDHHEEDMDMSD", "length": 510, "header": "tr|A0A9J7F5I5-1|A0A9J7J663_CRIGR Computationally mapped isoform of Serine/arginine-rich splicing factor 11 isoform X6 OS=Cricetulus griseus OX=10029 GN=Srsf11 PE=4 SV=1 CANONICAL=A0A9J7J663-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HAC6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J663/entry#A0A9J7HAC6-1", "sequence": { "sequence": "MSSPPAPGAVGPTSSSVALTSLALRRNFFREAARAMSSTAVVPSAAGPGPGPSGGPGGGTEVIQVTNVSPSASSEQMRTLFGFLGKIDELRLFPPDDSPLPVSSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPDETKALSLLAPANAVAGLLPGGGLLPTPNPLTQIGAVPLAALGAPALDPALAALGLPGTNLNSQSLAADQLLKLMSTVDPKLNHVAAGLVSPSLKSDTSSKEIEEAMKRVREAQSLISAAIEPDKKEEKRRHSRSRSRSRRRRTPSSSRHRRSRSRSRRRSHSKSRSRRRSKSPRRRRSHSRERGRRSRSTSKARDKKKEDKEKKRSKTPPKSYSTARRSRSASRHKKEKKKDKDKERSRDERERSTSKKKRSKDKEKERERKSESDKDVKQVTRDYDEEEQGYDSEKEKKEEKRPTEAVSPKTKECSVEKGVGDLRESKVNGDDHHEEDMDMSD", "length": 479, "header": "tr|A0A9J7HAC6-1|A0A9J7J663_CRIGR Computationally mapped isoform of Serine/arginine-rich splicing factor 11 isoform X6 OS=Cricetulus griseus OX=10029 GN=Srsf11 PE=4 SV=1 CANONICAL=A0A9J7J663-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J663-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J663/entry#A0A9J7J663-1", "sequence": { "sequence": "MSSPPAPGAVGPTSSSVALTSLALRRNFFREAARAMSSTAVVPSAAGPGPGPSGGPGGGTEVIQVTNVSPSASSEQMRTLFGFLGKIDELRLFPPDDSPLPVSSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPDETKALSLLAPANAVAGLLPGGGLLPTPNPLTQIGAVPLAALGAPALDPALAALGLPGTNLNSQSLAADQLLKLMSTVDPKLNHVAAGLVSPSLKSDTSSKEIEEAMKRVREAQSLISAAIEPDKKEEKRRHSRSRSRSRRRRTPSSSRHRRSRSRSRRRSHSKSRSRRRSKSPRRRRSHSRERGRRSRSTSKARDKKKEDKEKKRSKTPPKSYSTARRSRSASSLHVCDSRERRRRRSRSGTRSPKKPRSPKRKLSRSPSPRRHKKEKKKDKDKERSRDERERSTSKKKRSKDKEKERERKSESDKDVKQVTRDYDEEEQGYDSEKEKKEEKRPTEAVSPKTKECSVEKGVGDLRESKVNGDDHHEEDMDMSD", "length": 518, "header": "tr|A0A9J7J663-1|A0A9J7J663_CRIGR Isoform 1 of Serine/arginine-rich splicing factor 11 isoform X6 OS=Cricetulus griseus OX=10029 GN=Srsf11 PE=4 SV=1 CANONICAL=A0A9J7J663-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JB76-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J663/entry#A0A9J7JB76-1", "sequence": { "sequence": "MSSPPAPGAVGPTSSSVALTSLALRRNFFREAARAMSSTAVVPSAAGPGPGPSGGPGGGTEVIQVTNVSPSASSEQMRTLFGFLGKIDELRLFPPDDSPLPVSSRVCFVKFHDPDSAVVAQHLTNTVFVDRALIVVPYAEGVIPDETKALSLLAPANAVAGLLPGGGLLPTPNPLTQIGAVPLAALGAPALDPALAALGLPGTNLNSQSLAADQLLKLMSTVDPKLNHVAAGLVSPSLKSDTSSKEIEEAMKRVREAQSLISAAIEPDKKEEKRRHSRSRSRSRRRRTPSSSRHRRSRSRSRRRSHSKSRSRRRSKSPRRRRSHSRERGRRSRSTSKARDKKKEDKEKKRSKTPPKSYSTARRSRSASSLHVCDSRERRRRRSRSGTRSPKKPRSPKRKLSRSPSPRRHKKEKKKDKDKERSRDERERSTSKKKRSKDKEKERERKSESDKDVKVTRDYDEEEQGYDSEKEKKEEKRPTEAVSPKTKECSVEKGVGDLRESKVNGDDHHEEDMDMSD", "length": 517, "header": "tr|A0A9J7JB76-1|A0A9J7JB76_CRIGR Computationally mapped isoform of Serine/arginine-rich splicing factor 11 isoform X7 OS=Cricetulus griseus OX=10029 GN=Srsf11 PE=4 SV=1 CANONICAL=A0A9J7J663-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 13, "start_aa": "Thr", "end_pos": 13, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr13", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A061IJ41", "url": "https://www.uniprot.org/uniprotkb/A0A061IJ41" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A061IJ41", "url": "https://www.uniprot.org/uniprotkb/A0A061IJ41" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100750677", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100750677", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "RNA binding", "id": "GO:0003723", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003723", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J663", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J663" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J663", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J663" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "RNA splicing", "id": "GO:0008380", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008380", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J663", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J663" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 67, "end_pos": 69, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7J663", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J663" }, { "id": "PS50102", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50102" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RRM", "eco_id": "ECO_0000259", "start_pos": 61, "end_pos": 141, "start_aa": "Glu", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 13 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 67, "end_pos": 69 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7HF69-1", "uniprot_ac": "A0A9J7HF69", "uniprot_id": "A0A9J7HF69_CRIGR", "mass": { "chemical_mass": 60724.0, "monoisotopic_mass": 60724.0 }, "refseq": { "ac": "XP_007641526", "name": "ankyrin repeat and SOCS box protein 3 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007641526" }, "gene_names": [ { "name": "Asb3", "type": "recommended", "evidence": [ { "id": "A0A9J7HF69", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HF69" } ] }, { "name": "Asb3", "type": "synonym", "evidence": [ { "id": "XP_007641526", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007641526" } ] } ], "protein_names": [ { "name": "Ankyrin repeat and SOCS box protein 3 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7HF69", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HF69/entry#names_and_taxonomy" } ] }, { "name": "ankyrin repeat and SOCS box protein 3 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007641526", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007641526" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613911.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007641526", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007641526" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HF69", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HF69" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Asb3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HF69", "locus": {} } ], "crossref": [ { "id": "cd03722", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03722", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100773709", "url": "https://www.ncbi.nlm.nih.gov/gene/100773709", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001496", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001496", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036036", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036036", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037329", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037329", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100773709", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773709", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2LB61", "url": "https://www.orthodb.org/?gene=A0A8C2LB61", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7HF69", "url": "https://www.orthodb.org/?gene=A0A9J7HF69", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24173", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24173", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24173:SF86", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24173:SF86", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24198", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24198", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24198:SF184", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24198:SF184", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00023", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00023", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07525", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07525", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007641526", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007641526", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2LB61", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LB61", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LB61-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LB61-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HF69", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HF69", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HF69-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HF69-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDFTEAYSSTCSAVGIAAREGNVKILRKLLKKGRSVDVADNRGWMPIHEAAYHNSVECLQMLIQTDPSEKYIKTKTFEGFCALHLAVSQGHWKITQILLEAGADPNATTLENTTPLFLVPIYVREDDGHEETPRGVCGKAVESGQIDVLKLLLQHGAKITGFHSMCGWNALHKASFQGNAEIIELLLKHGTDLECQDDFGITPLFVAAQYGKLKSLDILISSGANINCQALDKATPLFIAAQEGHIKCVELLLSSGADPDLYCNEDNWQLPIHAAAQMGHAKILDLLIPLTNRTCDTGPDKVSPVYSAVFGGREECLEILLQNGYAPDAQMCLVFGFNSPLCMALQKDCDCFGIVNILLKYGAQLNELHLAYCLKYEKFSMFCYFLKKVCLSAPWNHISEFITYAVKAQKEYKKWLPHLLLAGFDPLTLLCSSSWVDSVSDDILIFTLEFSNWKRLPPAVEKIISARANSSWALPQHMACVPCLAHLCRLEIRTSLKAERLRSDNFIRQLPLPRSLQSYLLYDEVLKMNEIPEPAAIHDGEISEAT", "length": 546, "header": "tr|A0A9J7HF69-1|A0A9J7HF69_CRIGR Isoform 1 of Ankyrin repeat and SOCS box protein 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Asb3 PE=3 SV=1 CANONICAL=A0A9J7HF69-1" }, "isoforms": [ { "isoform_ac": "A0A8C2LB61-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HF69/entry#A0A8C2LB61-1", "sequence": { "sequence": "MDFTEAYSSTCSAVGIAAREGNVKILRKLLKKGRSVDVADNRGWMPIHEAAYHNSVECLQMLIQTDPSEKYIKTKTFEGFCALHLAVSQGHWKITQILLEAGADPNATTLENTTPLFLAVESGQIDVLKLLLQHGAKITGFHSMCGWNALHKASFQGNAEIIELLLKHGTDLECQDDFGITPLFVAAQYGKLKSLDILISSGANINCQALDKATPLFIAAQEGHIKCVELLLSSGADPDLYCNEDNWQLPIHAAAQMGHAKILDLLIPLTNRTCDTGPDKVSPVYSAVFGGREECLEILLQNGYAPDAQMCLVFGFNSPLCMALQKDCDCFGIVNILLKYGAQLNELHLAYCLKYEKFSMFCYFLKKVCLSAPWNHISEFITYAVKAQKEYKKWLPHLLLAGFDPLTLLCSSSWVDSVSDDILIFTLEFSNWKRLPPAVEKIISARANSSWALPQHMACVPCLAHLCRLEIRTSLKAERLRSDNFIRQLPLPRSLQSYLLYDEVLKMNEIPEPAAIHDGEISEAT", "length": 525, "header": "tr|A0A8C2LB61-1|A0A9J7HF69_CRIGR Computationally mapped isoform of Ankyrin repeat and SOCS box protein 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Asb3 PE=3 SV=1 CANONICAL=A0A9J7HF69-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HF69-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HF69/entry#A0A9J7HF69-1", "sequence": { "sequence": "MDFTEAYSSTCSAVGIAAREGNVKILRKLLKKGRSVDVADNRGWMPIHEAAYHNSVECLQMLIQTDPSEKYIKTKTFEGFCALHLAVSQGHWKITQILLEAGADPNATTLENTTPLFLVPIYVREDDGHEETPRGVCGKAVESGQIDVLKLLLQHGAKITGFHSMCGWNALHKASFQGNAEIIELLLKHGTDLECQDDFGITPLFVAAQYGKLKSLDILISSGANINCQALDKATPLFIAAQEGHIKCVELLLSSGADPDLYCNEDNWQLPIHAAAQMGHAKILDLLIPLTNRTCDTGPDKVSPVYSAVFGGREECLEILLQNGYAPDAQMCLVFGFNSPLCMALQKDCDCFGIVNILLKYGAQLNELHLAYCLKYEKFSMFCYFLKKVCLSAPWNHISEFITYAVKAQKEYKKWLPHLLLAGFDPLTLLCSSSWVDSVSDDILIFTLEFSNWKRLPPAVEKIISARANSSWALPQHMACVPCLAHLCRLEIRTSLKAERLRSDNFIRQLPLPRSLQSYLLYDEVLKMNEIPEPAAIHDGEISEAT", "length": 546, "header": "tr|A0A9J7HF69-1|A0A9J7HF69_CRIGR Isoform 1 of Ankyrin repeat and SOCS box protein 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Asb3 PE=3 SV=1 CANONICAL=A0A9J7HF69-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LB61", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LB61" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LB61", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LB61" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100773709", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773709", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HF69", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HF69" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "intracellular signal transduction", "id": "GO:0035556", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035556", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HF69", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HF69" } ], "pmid": "" }, { "name": "protein ubiquitination", "id": "GO:0016567", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016567", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HF69", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HF69" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 106, "end_pos": 108, "annotation": "n_glycosylation_sequon" }, { "start_pos": 112, "end_pos": 114, "annotation": "n_glycosylation_sequon" }, { "start_pos": 292, "end_pos": 294, "annotation": "n_glycosylation_sequon" }, { "start_pos": 469, "end_pos": 471, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7HF69", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HF69" }, { "id": "PS50225", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50225" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SOCS box", "eco_id": "ECO_0000259", "start_pos": 484, "end_pos": 526, "start_aa": "Leu", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 106, "end_pos": 108 }, { "start_pos": 112, "end_pos": 114 }, { "start_pos": 292, "end_pos": 294 }, { "start_pos": 469, "end_pos": 471 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", 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"A0A9J7JBI6-1", "uniprot_ac": "A0A9J7JBI6", "uniprot_id": "A0A9J7JBI6_CRIGR", "mass": { "chemical_mass": 122576.0, "monoisotopic_mass": 122576.0 }, "refseq": { "ac": "XP_027249286", "name": "voltage-dependent calcium channel subunit alpha-2/delta-1 isoform X4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027249286" }, "gene_names": [ { "name": "Cacna2d1", "type": "recommended", "evidence": [ { "id": "A0A9J7JBI6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBI6" } ] }, { "name": "Cacna2d1", "type": "synonym", "evidence": [ { "id": "XP_027249286", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027249286" } ] } ], "protein_names": [ { "name": "Voltage-dependent calcium channel subunit alpha-2/delta-1 isoform X4", "type": "synonym", "evidence": [ { "id": "A0A9J7JBI6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBI6/entry#names_and_taxonomy" } ] }, { "name": "voltage-dependent calcium channel subunit alpha-2/delta-1 isoform X4", "type": "synonym", "evidence": [ { "id": "XP_027249286", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027249286" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027249286", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027249286" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JBI6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBI6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cacna2d1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBI6", "locus": {} } ], "crossref": [ { "id": "A0A9J7JBI6", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JBI6", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd01463", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01463", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd12912", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12912", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100764769", "url": "https://www.ncbi.nlm.nih.gov/gene/100764769", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002035", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002035", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013608", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013608", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036465", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036465", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051173", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051173", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100764769", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764769", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JBI6", "url": "https://www.orthodb.org/?gene=A0A9J7JBI6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10166", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10166", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10166:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10166:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00092", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00092", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08399", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08399", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08473", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08473", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027249286", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027249286", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2LGV1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LGV1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LGV1-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LGV1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F6K3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6K3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F6K3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6K3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JBI6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBI6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JBI6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBI6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAGCLLALTLTLFQSWLIGPSCEEPFPSAVTIKSWVDKMQEDLVTLAKTASGVTQLADIYEKYQELYTVEPNNARQLVEIAARDIEKLLSNRSKALVRLAMEAEKVQAAHQWREDFASNEVVYYNAKDDLDPERNESEPGSQRIKPVFIEDANFGRQISYQHAAVHIPTDIYEGSTIVLNELNWTSALDEVFKRNRDEDPTLLWQVFGSATGLARYYPASPWVDNSRTPNKIDLYDVRRRPWYIQGAASPKDMLILVDVSGSVSGLTLKLIRTSVSEMLETLSDDDFVNVASFNSNAQDVSCFQHLVQANVRNKKVLKDAVNNITAKGITDYKKGFSFAFEQLLNYNVSRANCNKIIMLFTDGGEERAQEIFAKYNKDKKVRVFTFSVGQHNYDRGPIQWMACENKGYYYEIPSIGAIRINTQEYLDVLGRPMVLAGDKAKQVQWTNVYLDALELGLVITGTLPVFNVTGQSENKTNLKNQLILGVMGVDVSLEDIKRLTPRFTLCPNGYYFAIDPNGYVLLHPNLQPKNPKSQEPVTLDFLDAELENDIKVEIRNKMIDGESGEKTFRTLVKSQDERYIDKGNRTYTWTPVNGTDYSLALVLPTYSFYYIKAKIEETITQARYSETLKPDNFEESGYTFIAPREYCNDLKLSDNNTEFLLNFNEFIDRKTPNNPSCNTDLINRILLDAGFTNELVQNYWSKQKNIKGVKARFVVTDGGITRVYPKEAGENWQENPETYEDSFYKRSLDNDNYVFTAPYFNKSGPGAYEAGIMVSKAVELYIQGKLLKPAVVGIKIDVNSWIENFTKTSIRDPCAGPVCDCKRNSDVMDCVILDDGGFLLMANHDDYTNQIGRFFGEIDPSLMRHLVNISVYAFNKSYDYQSVCDPGAAPKQGAGHRSAYVPSIADILQIGWWATAAAWSILQQLLLSLTFPRILEAVEMEEDDFTTSLSKQSCITEQTQYFFDNDSKSFSGVLDCGNCSRIFHVEKLMNTNLVFIMVESKVTCPCDTRLLMQAEQTSDGPDPCDMVKQPRYRKGPDVCFDNNVLEDYTDCGGVSGLNPSLWSIIGLQFLLLWLVSGSKHYLL", "length": 1084, "header": "tr|A0A9J7JBI6-1|A0A9J7JBI6_CRIGR Isoform 1 of Voltage-dependent calcium channel subunit alpha-2/delta-1 isoform X4 OS=Cricetulus griseus OX=10029 GN=Cacna2d1 PE=3 SV=1 CANONICAL=A0A9J7JBI6-1" }, "isoforms": [ { "isoform_ac": "A0A8C2LGV1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBI6/entry#A0A8C2LGV1-1", "sequence": { "sequence": "MAAGCLLALTLTLFQSWLIGPSCEEPFPSAVTIKSWVDKMQEDLVTLAKTASGVTQLADIYEKYQELYTVEPNNARQLVEIAARDIEKLLSNRSKALVRLAMEAEKVQAAHQWREDFASNEVVYYNAKDDLDPERNESEPGSQRIKPVFIEDANFGRQISYQHAAVHIPTDIYEGSTIVLNELNWTSALDEVFKRNRDEDPTLLWQVFGSATGLARYYPASPWVDNSRTPNKIDLYDVRRRPWYIQGAASPKDMLILVDVSGSVSGLTLKLIRTSVSEMLETLSDDDFVNVASFNSNAQDVSCFQHLVQANVRNKKVLKDAVNNITAKGITDYKKGFSFAFEQLLNYNVSRANCNKIIMLFTDGGEERAQEIFAKYNKDKKVRVFTFSVGQHNYDRGPIQWMACENKGYYYEIPSIGAIRINTQEYLDVLGRPMVLAGDKAKQVQWTNVYLDALELGLVITGTLPVFNVTGQSENKTNLKNQLILGVMGVDVSLEDIKRLTPRFTLCPNGYYFAIDPNGYVLLHPNLQPKEPVTLDFLDAELENDIKVEIRNKMIDGESGEKTFRTLVKSQDERYIDKGNRTYTWTPVNGTDYSLALVLPTYSFYYIKAKIEETITQARYSETLKPDNFEESGYTFIAPREYCNDLKLSDNNTEFLLNFNEFIDRKTPNNPSCNTDLINRILLDAGFTNELVQNYWSKQKNIKGVKARFVVTDGGITRVYPKEAGENWQENPETYEDSFYKRSLDNDNYVFTAPYFNKSGPGAYEAGIMVSKAVELYIQGKLLKPAVVGIKIDVNSWIENFTKTSIRDPCAGPVCDCKRNSDVMDCVILDDGGFLLMANHDDYTNQIGRFFGEIDPSLMRHLVNISVYAFNKSYDYQSVCDPGAAPKQGAGHRSAYVPSIADILQIGWWATAAAWSILQQLLLSLTFPRILEAVEMEEDDFTTSLSKQSCITEQTQYFFDNDSKSFSGVLDCGNCSRIFHVEKLMNTNLVFIMVESKVTCPCDTRLLMQAEQTSDGPDPCDMVKQPRYRKGPDVCFDNNVLEDYTDCGGVSGLNPSLWSIIGLQFLLLWLVSGSKHYLL", "length": 1079, "header": "tr|A0A8C2LGV1-1|A0A9J7JBI6_CRIGR Computationally mapped isoform of Voltage-dependent calcium channel subunit alpha-2/delta-1 isoform X4 OS=Cricetulus griseus OX=10029 GN=Cacna2d1 PE=3 SV=1 CANONICAL=A0A9J7JBI6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F6K3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBI6/entry#A0A9J7F6K3-1", "sequence": { "sequence": "MKNNMNLASQIGYFREWKSELCSCTRLAMEAEKVQAAHQWREDFASNEVVYYNAKDDLDPERNESEPGSQRIKPVFIEDANFGRQISYQHAAVHIPTDIYEGSTIVLNELNWTSALDEVFKRNRDEDPTLLWQVFGSATGLARYYPASPWVDNSRTPNKIDLYDVRRRPWYIQGAASPKDMLILVDVSGSVSGLTLKLIRTSVSEMLETLSDDDFVNVASFNSNAQDVSCFQHLVQANVRNKKVLKDAVNNITAKGITDYKKGFSFAFEQLLNYNVSRANCNKIIMLFTDGGEERAQEIFAKYNKDKKVRVFTFSVGQHNYDRGPIQWMACENKGYYYEIPSIGAIRINTQEYLDVLGRPMVLAGDKAKQVQWTNVYLDALELGLVITGTLPVFNVTGQSENKTNLKNQLILGVMGVDVSLEDIKRLTPRFTLCPNGYYFAIDPNGYVLLHPNLQPKNPKSQEPVTLDFLDAELENDIKVEIRNKMIDGESGEKTFRTLVKSQDERYIDKGNRTYTWTPVNGTDYSLALVLPTYSFYYIKAKIEETITQARYSETLKPDNFEESGYTFIAPREYCNDLKLSDNNTEFLLNFNEFIDRKTPNNPSCNTDLINRILLDAGFTNELVQNYWSKQKNIKGVKARFVVTDGGITRVYPKEAGENWQENPETYEDSFYKRSLDNDNYVFTAPYFNKSGPGAYEAGIMVSKAVELYIQGKLLKPAVVGIKIDVNSWIENFTKTSIRDPCAGPVCDCKRNSDVMDCVILDDGGFLLMANHDDYTNQIGRFFGEIDPSLMRHLVNISVYAFNKSYDYQSVCDPGAAPKQGAGHRSAYVPSIADILQIGWWATAAAWSILQQLLLSLTFPRILEAVEMEEDDFTTSLSKQSCITEQTQYFFDNDSKSFSGVLDCGNCSRIFHVEKLMNTNLVFIMVESKVTCPCDTRLLMQAEQTSDGPDPCDMVKQPRYRKGPDVCFDNNVLEDYTDCGGVSGLNPSLWSIIGLQFLLLWLVSGSKHYLL", "length": 1011, "header": "tr|A0A9J7F6K3-1|A0A9J7JBI6_CRIGR Computationally mapped isoform of Voltage-dependent calcium channel subunit alpha-2/delta-1 isoform X4 OS=Cricetulus griseus OX=10029 GN=Cacna2d1 PE=3 SV=1 CANONICAL=A0A9J7JBI6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JBI6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBI6/entry#A0A9J7JBI6-1", "sequence": { "sequence": "MAAGCLLALTLTLFQSWLIGPSCEEPFPSAVTIKSWVDKMQEDLVTLAKTASGVTQLADIYEKYQELYTVEPNNARQLVEIAARDIEKLLSNRSKALVRLAMEAEKVQAAHQWREDFASNEVVYYNAKDDLDPERNESEPGSQRIKPVFIEDANFGRQISYQHAAVHIPTDIYEGSTIVLNELNWTSALDEVFKRNRDEDPTLLWQVFGSATGLARYYPASPWVDNSRTPNKIDLYDVRRRPWYIQGAASPKDMLILVDVSGSVSGLTLKLIRTSVSEMLETLSDDDFVNVASFNSNAQDVSCFQHLVQANVRNKKVLKDAVNNITAKGITDYKKGFSFAFEQLLNYNVSRANCNKIIMLFTDGGEERAQEIFAKYNKDKKVRVFTFSVGQHNYDRGPIQWMACENKGYYYEIPSIGAIRINTQEYLDVLGRPMVLAGDKAKQVQWTNVYLDALELGLVITGTLPVFNVTGQSENKTNLKNQLILGVMGVDVSLEDIKRLTPRFTLCPNGYYFAIDPNGYVLLHPNLQPKNPKSQEPVTLDFLDAELENDIKVEIRNKMIDGESGEKTFRTLVKSQDERYIDKGNRTYTWTPVNGTDYSLALVLPTYSFYYIKAKIEETITQARYSETLKPDNFEESGYTFIAPREYCNDLKLSDNNTEFLLNFNEFIDRKTPNNPSCNTDLINRILLDAGFTNELVQNYWSKQKNIKGVKARFVVTDGGITRVYPKEAGENWQENPETYEDSFYKRSLDNDNYVFTAPYFNKSGPGAYEAGIMVSKAVELYIQGKLLKPAVVGIKIDVNSWIENFTKTSIRDPCAGPVCDCKRNSDVMDCVILDDGGFLLMANHDDYTNQIGRFFGEIDPSLMRHLVNISVYAFNKSYDYQSVCDPGAAPKQGAGHRSAYVPSIADILQIGWWATAAAWSILQQLLLSLTFPRILEAVEMEEDDFTTSLSKQSCITEQTQYFFDNDSKSFSGVLDCGNCSRIFHVEKLMNTNLVFIMVESKVTCPCDTRLLMQAEQTSDGPDPCDMVKQPRYRKGPDVCFDNNVLEDYTDCGGVSGLNPSLWSIIGLQFLLLWLVSGSKHYLL", "length": 1084, "header": "tr|A0A9J7JBI6-1|A0A9J7JBI6_CRIGR Isoform 1 of Voltage-dependent calcium channel subunit alpha-2/delta-1 isoform X4 OS=Cricetulus griseus OX=10029 GN=Cacna2d1 PE=3 SV=1 CANONICAL=A0A9J7JBI6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LGV1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LGV1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LGV1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LGV1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100764769", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764769", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JBI6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBI6" } ], "pmid": "" }, { "name": "voltage-gated calcium channel activity", "id": "GO:0005245", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005245", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JBI6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBI6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "L-type voltage-gated calcium channel complex", "id": "GO:1990454", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990454", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JBI6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBI6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 136, "end_pos": 138, "annotation": "n_glycosylation_sequon" }, { "start_pos": 184, "end_pos": 186, "annotation": "n_glycosylation_sequon" }, { "start_pos": 324, "end_pos": 326, "annotation": "n_glycosylation_sequon" }, { "start_pos": 348, "end_pos": 350, "annotation": "n_glycosylation_sequon" }, { "start_pos": 468, "end_pos": 470, "annotation": "n_glycosylation_sequon" }, { "start_pos": 475, "end_pos": 477, "annotation": "n_glycosylation_sequon" }, { "start_pos": 585, "end_pos": 587, "annotation": "n_glycosylation_sequon" }, { "start_pos": 594, "end_pos": 596, "annotation": "n_glycosylation_sequon" }, { "start_pos": 656, "end_pos": 658, "annotation": "n_glycosylation_sequon" }, { "start_pos": 762, "end_pos": 764, "annotation": "n_glycosylation_sequon" }, { "start_pos": 805, "end_pos": 807, "annotation": "n_glycosylation_sequon" }, { "start_pos": 869, "end_pos": 871, "annotation": "n_glycosylation_sequon" }, { "start_pos": 876, "end_pos": 878, "annotation": "n_glycosylation_sequon" }, { "start_pos": 92, "end_pos": 94, "annotation": "n_glycosylation_sequon" }, { "start_pos": 966, "end_pos": 968, "annotation": "n_glycosylation_sequon" }, { "start_pos": 979, "end_pos": 981, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JBI6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBI6" }, { "id": "PS50234", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50234" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "VWFA", "eco_id": "ECO_0000259", "start_pos": 253, "end_pos": 430, "start_aa": "Asp", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 136, "end_pos": 138 }, { "start_pos": 184, "end_pos": 186 }, { "start_pos": 324, "end_pos": 326 }, { "start_pos": 348, "end_pos": 350 }, { "start_pos": 468, "end_pos": 470 }, { "start_pos": 475, "end_pos": 477 }, { "start_pos": 585, "end_pos": 587 }, { "start_pos": 594, "end_pos": 596 }, { "start_pos": 656, "end_pos": 658 }, { "start_pos": 762, "end_pos": 764 }, { "start_pos": 805, "end_pos": 807 }, { "start_pos": 869, "end_pos": 871 }, { "start_pos": 876, "end_pos": 878 }, { "start_pos": 92, "end_pos": 94 }, { "start_pos": 966, "end_pos": 968 }, { "start_pos": 979, "end_pos": 981 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7J777-1", "uniprot_ac": "A0A9J7J777", "uniprot_id": "A0A9J7J777_CRIGR", "mass": { "chemical_mass": 53670.0, "monoisotopic_mass": 53670.0 }, "refseq": { "ac": "XP_027248091", "name": "ribitol-5-phosphate xylosyltransferase 1 isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248091" }, "gene_names": [ { "name": "Rxylt1", "type": "recommended", "evidence": [ { "id": "A0A9J7J777", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J777" } ] }, { "name": "Rxylt1", "type": "synonym", "evidence": [ { "id": "XP_027248091", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248091" } ] } ], "protein_names": [ { "name": "Ribitol-5-phosphate xylosyltransferase 1 isoform X3", "type": "synonym", "evidence": [ { "id": "A0A9J7J777", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J777/entry#names_and_taxonomy" } ] }, { "name": "ribitol-5-phosphate xylosyltransferase 1 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_027248091", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248091" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027248091", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248091" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J777", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J777" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Rxylt1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J777", "locus": {} } ], "crossref": [ { "id": "A0A9J7J777", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7J777", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd21099", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21099", "database": "CDD", "categories": [ "Protein Classification" ] 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"PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15576:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15576:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF24785", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24785", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF24786", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24786", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027248091", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248091", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2LKV8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LKV8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LKV8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LKV8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J777", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J777", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J777-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J777-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRLTRTRLCSLLVALYCLFSIYAAYHVFFGRRRRATAASSRGSRKAAVQAKERRGRGRAEAGWAAGLRLALRLALGSLGPLDQSALESEEWNPWEGDEKSEQQHRIKTSLQMLTKSTREKTERSIQIWGKAAIGLYLWEHIFEGTLDPTDVTAQWREGQSIVGRTHYSFITGPAVLPGYFSIDVDNVVLVLNGREKAKIVHATQWLLYTQNLIQTQKLQHLAVVLLGNEHCDNDWIMKFLKRNRGFVDLLFITYDSPWINGADVLQWPLGVATYRKFPVVEATWSMLHDERPYICNFLGTVYENSSRQALMNILKQNGSEKLCWVSAREQWQPQETNESLRNYQDALLQSDLTLCPVGVNTECYRIYEASSFGSVPVVEDVMTAGHCGNTSSHHSTPLQLLKAMGAPFIFIKDWKELPAILEKEKTIILQEKVQRRKMLLQWYQHFKTELKRKFTNTLESSFFMNNKG", "length": 468, "header": "tr|A0A9J7J777-1|A0A9J7J777_CRIGR Isoform 1 of Ribitol-5-phosphate xylosyltransferase 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Rxylt1 PE=4 SV=1 CANONICAL=A0A9J7J777-1" }, "isoforms": [ { "isoform_ac": "A0A8C2LKV8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J777/entry#A0A8C2LKV8-1", "sequence": { "sequence": "MRLTRTRLCSLLVALYCLFSIYAAYHVFFGRRRRATAASSRGSRKAAVQAKERRGRDQSALESEEWNPWEGDEKSEQQHRIKTSLQMLTKSTREKTERSIQIWGKAAIGLYLWEHIFEGTLDPTDVTAQWREGQSIVGRTHYSFITGPAVLPGYFSIDVDNVVLVLNGREKAKIVHATQWLLYTQNLIQTQKLQHLAVVLLGNEHCDNDWIMKFLKRNRGFVDLLFITYDSPWINGADVLQWPLGVATYRKFPVVEATWSMLHDERPYICNFLGTVYENSSRQALMNILKQNGSEKLCWVSAREQWQPQETNESLRNYQDALLQSDLTLCPVGVNTECYRIYEASSFGSVPVVEDVMTAGHCGNTSSHHSTPLQLLKAMGAPFIFIKDWKELPAILEKEKTIILQEKVQRRKMLLQWYQHFKTELKRKFTNTLESSFFMNNKG", "length": 443, "header": "tr|A0A8C2LKV8-1|A0A9J7J777_CRIGR Computationally mapped isoform of Ribitol-5-phosphate xylosyltransferase 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Rxylt1 PE=4 SV=1 CANONICAL=A0A9J7J777-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J777-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J777/entry#A0A9J7J777-1", "sequence": { "sequence": "MRLTRTRLCSLLVALYCLFSIYAAYHVFFGRRRRATAASSRGSRKAAVQAKERRGRGRAEAGWAAGLRLALRLALGSLGPLDQSALESEEWNPWEGDEKSEQQHRIKTSLQMLTKSTREKTERSIQIWGKAAIGLYLWEHIFEGTLDPTDVTAQWREGQSIVGRTHYSFITGPAVLPGYFSIDVDNVVLVLNGREKAKIVHATQWLLYTQNLIQTQKLQHLAVVLLGNEHCDNDWIMKFLKRNRGFVDLLFITYDSPWINGADVLQWPLGVATYRKFPVVEATWSMLHDERPYICNFLGTVYENSSRQALMNILKQNGSEKLCWVSAREQWQPQETNESLRNYQDALLQSDLTLCPVGVNTECYRIYEASSFGSVPVVEDVMTAGHCGNTSSHHSTPLQLLKAMGAPFIFIKDWKELPAILEKEKTIILQEKVQRRKMLLQWYQHFKTELKRKFTNTLESSFFMNNKG", "length": 468, "header": "tr|A0A9J7J777-1|A0A9J7J777_CRIGR Isoform 1 of Ribitol-5-phosphate xylosyltransferase 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Rxylt1 PE=4 SV=1 CANONICAL=A0A9J7J777-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LKV8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LKV8" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LKV8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LKV8" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100757873", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757873", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "Golgi membrane", "id": "GO:0000139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000139", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J777", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J777" } ], "pmid": "" }, { "name": "Golgi apparatus", "id": "GO:0005794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005794", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J777", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J777" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein O-linked glycosylation via mannose", "id": "GO:0035269", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035269", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J777", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J777" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "ribitol beta-1,4-xylosyltransferase activity", "id": "GO:0120053", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0120053", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J777", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J777" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 304, "end_pos": 306, "annotation": "n_glycosylation_sequon" }, { "start_pos": 317, "end_pos": 319, "annotation": "n_glycosylation_sequon" }, { "start_pos": 337, "end_pos": 339, "annotation": "n_glycosylation_sequon" }, { "start_pos": 389, "end_pos": 391, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7J777", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J777" }, { "id": "PF24785", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24785" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RXYLT1 C-terminal", "eco_id": "ECO_0000259", "start_pos": 274, "end_pos": 463, "start_aa": "Tyr", "end_aa": "Phe", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7J777", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J777" }, { "id": "PF24786", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24786" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RXYLT1 N-terminal", "eco_id": "ECO_0000259", "start_pos": 125, "end_pos": 268, "start_aa": "Ile", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 304, "end_pos": 306 }, { "start_pos": 317, "end_pos": 319 }, { "start_pos": 337, "end_pos": 339 }, { "start_pos": 389, "end_pos": 391 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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"total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7J861-1", "uniprot_ac": "A0A9J7J861", "uniprot_id": "A0A9J7J861_CRIGR", "mass": { "chemical_mass": 79165.0, "monoisotopic_mass": 79165.0 }, "refseq": { "ac": "XP_007605969", "name": "kelch-like protein 5 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007605969" }, "gene_names": [ { "name": "LOC118237588", "type": "recommended", "evidence": [ { "id": "A0A9J7J861", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J861" } ] }, { "name": "LOC118237588", "type": "synonym", "evidence": [ { "id": "XP_007605969", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007605969" } ] } ], "protein_names": [ { "name": "Kelch-like protein 5 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7J861", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J861/entry#names_and_taxonomy" } ] }, { "name": "kelch-like protein 5 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007605969", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007605969" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 1844 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003618845.1) and transcript sequences (IACG01059935.1 and IACG01060011.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_007605969.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007605969", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007605969" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J861", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J861" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC118237588", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J861", "locus": {} } ], "crossref": [ { "id": "A0A9J7J861", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7J861", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd18337", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd18337", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd18511", "url": 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"https://www.ebi.ac.uk/interpro/entry/pfam/PF24981", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007605969", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007605969", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2LVG4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LVG4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LVG4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LVG4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F3T9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3T9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F3T9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3T9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HCK5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCK5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HCK5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCK5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J861", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J861", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J861-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J861-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J868", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J868", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J868-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J868-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSGSRKEFDVKQILKIRWRWFGHQASSNSSVDSQQGEFWNRGQTGANGGRKFLDPCNLQLPLASIGYRRSSQLDFQNSPSWPMASTSEVPAFEFTAEDCAGAHWLDRPEVDDGTSEEENESDSSSSRTSNSSQTLSSCHTMEPCSSDEFFQALNHAEQTFKKMENYLRHKQLCDVILVAGDRRIPAHRLVLSSVSDYFAAMFTNDVREARQEEIKMEGVEPNSLWSLIQYAYTGRLELKEDNIECLLSTACLLQLSQVVEACCKFLMKQLHPSNCLGIRSFADAQGCTDLHKVAHNYTMEHFMEVIRNQEFVLLPANEIAKLLASDDMNIPNEETILNALLTWVRHDLEQRRKDLSKLLAYIRLPLLAPQFLADLENNALFRDDIECQKLIMEAMKYHLLPERRPMLQSPRTKPRKSTVGTLFAVGGMDSTKGATSIEKYDLRTNMWTPVANMNGRRLQFGVAVLDDKLYVVGGRDGLKTLNTVECYNPKTKTWSVMPPMSTHRHGLGVAVLEGPMYAVGGHDGWSYLNTVERWDPQARQWNFVATMSTPRSTVGVAVLSGKLYAVGGRDGSSCLKSVECFDPHTNKWTPCAQMSKRRGGVGVTTWNGLLYAIGGHDAPTSNLTSRLSDCVERYDPKTDMWTAVASMSISRDAVGVCLLGDKLYAVGGYDGQTYLNIVEAYDPQTNEWTQVAPLCLGRAGACVVTVKI", "length": 708, "header": "tr|A0A9J7J861-1|A0A9J7J861_CRIGR Isoform 1 of Kelch-like protein 5 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC118237588 PE=4 SV=1 CANONICAL=A0A9J7J861-1" }, "isoforms": [ { "isoform_ac": "A0A8C2LVG4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J861/entry#A0A8C2LVG4-1", "sequence": { "sequence": "MEPCSSDEFFQALNHAEQTFKKMENYLRHKQLCDVILVAGDRRIPAHRLVLSSVSDYFAAMFTNDVREARQEEIKMEGVEPNSLWSLIQYAYTGRLELKEDNIECLLSTACLLQLSQVVEACCKFLMKQLHPSNCLGIRSFADAQGCTDLHKVAHNYTMEHFMEVIRNQEFVLLPANEIAKLLASDDMNIPNEETILNALLTWVRHDLEQRRKDLSKLLAYIRLPLLAPQFLADLENNALFRDDIECQKLIMEAMKYHLLPERRPMLQSPRTKPRKSTVGTLFAVGGMDSTKGATSIEKYDLRTNMWTPVANMNGRRLQFGVAVLDDKLYVVGGRDGLKTLNTVECYNPKTKTWSVMPPMSTHRHGLGVAVLEGPMYAVGGHDGWSYLNTVERWDPQARQWNFVATMSTPRSTVGVAVLSGKLYAVGGRDGSSCLKSVECFDPHTNKWTPCAQMSKRRGGVGVTTWNGLLYAIGGHDAPTSNLTSRLSDCVERYDPKTDMWTAVASMSISRDAVGVCLLGDKLYAVGGYDGQTYLNIVEAYDPQTNEWTQVAPLCLGRAGACVVTVKI", "length": 568, "header": "tr|A0A8C2LVG4-1|A0A9J7J861_CRIGR Computationally mapped isoform of Kelch-like protein 5 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC118237588 PE=4 SV=1 CANONICAL=A0A9J7J861-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F3T9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J861/entry#A0A9J7F3T9-1", "sequence": { "sequence": "MSGSRKEFDVKQILKIRWRWFGHQASSNSSVDSQQGEFWNRGQTGANGGRKFLDPCNLQLPLASIGYRRSSQLDFQNSPSWPMASTSEVPAFEFTAEDCAGAHWLDRPEVDDGTSEEENESDSSSSRTSNSSQTLSSCHTMEPCSSDEFFQALNHAEQTFKKMENYLRHKQLCDVILVAGDRRIPAHRLVLSSVSDYFAAMFTNDVREARQEEIKMEGVEPNSLWSLIQYAYTGRLELKEDNIECLLSTACLLQLSQVVEACCKFLMKQLHPSNCLGIRSFADAQGCTDLHKVAHNYTMEHFMEVIRNQEFVLLPANEIAKLLASDDMNIPNEETILNALLTWVRHDLEQRRKDLSKLLAYIRLPLLAPQGFSLYLELITMARLAGQ", "length": 387, "header": "tr|A0A9J7F3T9-1|A0A9J7J861_CRIGR Computationally mapped isoform of Kelch-like protein 5 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC118237588 PE=4 SV=1 CANONICAL=A0A9J7J861-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HCK5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J861/entry#A0A9J7HCK5-1", "sequence": { "sequence": "MMALVKRKMNLIPARAGHIYVPMCARACRKSEEGIKSPGTGVTDSYELPHGCWELNLGLLQEQTSNSSQTLSSCHTMEPCSSDEFFQALNHAEQTFKKMENYLRHKQLCDVILVAGDRRIPAHRLVLSSVSDYFAAMFTNDVREARQEEIKMEGVEPNSLWSLIQYAYTGRLELKEDNIECLLSTACLLQLSQVVEACCKFLMKQLHPSNCLGIRSFADAQGCTDLHKVAHNYTMEHFMEVIRNQEFVLLPANEIAKLLASDDMNIPNEETILNALLTWVRHDLEQRRKDLSKLLAYIRLPLLAPQFLADLENNALFRDDIECQKLIMEAMKYHLLPERRPMLQSPRTKPRKSTVGTLFAVGGMDSTKGATSIEKYDLRTNMWTPVANMNGRRLQFGVAVLDDKLYVVGGRDGLKTLNTVECYNPKTKTWSVMPPMSTHRHGLGVAVLEGPMYAVGGHDGWSYLNTVERWDPQARQWNFVATMSTPRSTVGVAVLSGKLYAVGGRDGSSCLKSVECFDPHTNKWTPCAQMSKRRGGVGVTTWNGLLYAIGGHDAPTSNLTSRLSDCVERYDPKTDMWTAVASMSISRDAVGVCLLGDKLYAVGGYDGQTYLNIVEAYDPQTNEWTQVAPLCLGRAGACVVTVKI", "length": 644, "header": "tr|A0A9J7HCK5-1|A0A9J7J861_CRIGR Computationally mapped isoform of Kelch-like protein 5 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC118237588 PE=4 SV=1 CANONICAL=A0A9J7J861-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J861-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J861/entry#A0A9J7J861-1", "sequence": { "sequence": "MSGSRKEFDVKQILKIRWRWFGHQASSNSSVDSQQGEFWNRGQTGANGGRKFLDPCNLQLPLASIGYRRSSQLDFQNSPSWPMASTSEVPAFEFTAEDCAGAHWLDRPEVDDGTSEEENESDSSSSRTSNSSQTLSSCHTMEPCSSDEFFQALNHAEQTFKKMENYLRHKQLCDVILVAGDRRIPAHRLVLSSVSDYFAAMFTNDVREARQEEIKMEGVEPNSLWSLIQYAYTGRLELKEDNIECLLSTACLLQLSQVVEACCKFLMKQLHPSNCLGIRSFADAQGCTDLHKVAHNYTMEHFMEVIRNQEFVLLPANEIAKLLASDDMNIPNEETILNALLTWVRHDLEQRRKDLSKLLAYIRLPLLAPQFLADLENNALFRDDIECQKLIMEAMKYHLLPERRPMLQSPRTKPRKSTVGTLFAVGGMDSTKGATSIEKYDLRTNMWTPVANMNGRRLQFGVAVLDDKLYVVGGRDGLKTLNTVECYNPKTKTWSVMPPMSTHRHGLGVAVLEGPMYAVGGHDGWSYLNTVERWDPQARQWNFVATMSTPRSTVGVAVLSGKLYAVGGRDGSSCLKSVECFDPHTNKWTPCAQMSKRRGGVGVTTWNGLLYAIGGHDAPTSNLTSRLSDCVERYDPKTDMWTAVASMSISRDAVGVCLLGDKLYAVGGYDGQTYLNIVEAYDPQTNEWTQVAPLCLGRAGACVVTVKI", "length": 708, "header": "tr|A0A9J7J861-1|A0A9J7J861_CRIGR Isoform 1 of Kelch-like protein 5 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC118237588 PE=4 SV=1 CANONICAL=A0A9J7J861-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J868-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J861/entry#A0A9J7J868-1", "sequence": { "sequence": "MSGSRKEFDVKQILKIRWRWFGHQASSNSSVDSQQGEFWNRGQTGANGGRKFLDPCNLQLPLASIGYRRSSQLDFQNSPSWPMASTSEVPAFEFTAEDCAGAHWLDRPEVDDGTSEEENESDSSSSRTSNSSQTLSSCHTMEPCSSDEFFQALNHAEQTFKKMENYLRHKQLCDVILVAGDRRIPAHRLVLSSVSDYFAAMFTNDVREARQEEIKMEGVEPNSLWSLIQYAYTGRLELKEDNIECLLSTACLLQLSQVVEACCKFLMKQLHPSNCLGIRSFADAQGCTDLHKVAHNYTMEHFMEVIRNQEFVLLPANEIAKLLASDDMNIPNEETILNALLTWVRHDLEQRRKDLSKLLAYIRLPLLAPQFLADLENNALFRDDIECQKLIMEAMKYHLLPERRPMLQSPRTKPRKSTVGTLFAVGGMDSTKGATSIEKYDLRTNMWTPVANMNGRRLQFGVAVLDDKLYVVGGRDGLKTLNTVECYNPKTKTWSVMPPMSTHRHGLGVAVLEGPMYAVGGHDGWSYLNTVERWDPQARQWNFVATMSTPRSTVGVAVLSGKLYAVGGRDGSSCLKSVECFDPHTNKWTPCAQMSKRRGGVGVTTWNGLLYAIGGHDAPTSNLTSRLSDCVERYDPKTDMWTAVASMSISRDAVGVCLLGDKLYAVGGYDGQTYLNIVEAYDPQTNEWTQH", "length": 691, "header": "tr|A0A9J7J868-1|A0A9J7J868_CRIGR Computationally mapped isoform of Kelch-like protein 5 isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC118237588 PE=4 SV=1 CANONICAL=A0A9J7J861-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LVG4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LVG4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LVG4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LVG4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:118237588", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118237588", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "actin binding", "id": "GO:0003779", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003779", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J861", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J861" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoskeleton", "id": "GO:0005856", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005856", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J861", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J861" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 119, "end_pos": 121, "annotation": "n_glycosylation_sequon" }, { "start_pos": 130, "end_pos": 132, "annotation": "n_glycosylation_sequon" }, { "start_pos": 28, "end_pos": 30, "annotation": "n_glycosylation_sequon" }, { "start_pos": 296, "end_pos": 298, "annotation": "n_glycosylation_sequon" }, { "start_pos": 622, "end_pos": 624, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7J861", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J861" }, { "id": "PS50097", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50097" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BTB", "eco_id": "ECO_0000259", "start_pos": 173, "end_pos": 240, "start_aa": "Cys", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 119, "end_pos": 121 }, { "start_pos": 130, "end_pos": 132 }, { "start_pos": 28, "end_pos": 30 }, { "start_pos": 296, "end_pos": 298 }, { "start_pos": 622, "end_pos": 624 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7J4R3-1", "uniprot_ac": "A0A9J7J4R3", "uniprot_id": "A0A9J7J4R3_CRIGR", "mass": { "chemical_mass": 17094.0, "monoisotopic_mass": 17094.0 }, "refseq": { "ac": "XP_027248559", "name": "myosin light polypeptide 6 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248559" }, "gene_names": [ { "name": "Myl6", "type": "recommended", "evidence": [ { "id": "A0A9J7J4R3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J4R3" } ] }, { "name": "Myl6", "type": "synonym", "evidence": [ { "id": "XP_027248559", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248559" } ] } ], "protein_names": [ { "name": "Myosin light polypeptide 6 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7J4R3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J4R3/entry#names_and_taxonomy" } ] }, { "name": "myosin light polypeptide 6 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027248559", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248559" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon, supported by mRNA evidence. 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"Protein" ] }, { "id": "A0A9J7JCV6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCV6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JCV6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCV6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K3H8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3H8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K3H8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3H8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MWSRRQGRLSTLACGVEELRCRRREREAALRKARREQQLVSKRLLREDAPEEAGGQSAAVLLGEAEVQQFLRLAQRGTDEKEREKALVSLRRGLQHPETQQTFIRLEGSMRTLVGLLTSNRALLQLEAARCLHELSHSEQSAVAEACLPATSYLLTYLSGHSSEFIELCLYTLGNLIVESEAVRKQLLPQGIVPALVACIQSPHVAVLEALGYALSQLLQSKEAPEKIIPENLGFGYFLAVFERSHWYLCGSCSQPTSAGSSLLDSSLLQHMLRLMQPGPKLNLGVAVEFAWCLHYIICSQVNNAMLLSHGALPTLAMLLLDMAGAAQRMDDAGLELQLACPVFRCLSNLLTEVPVEAMGEQMELRDERIVAALFILLQFFLQKQPTLLSEGLWLLNNLTANSPTLCTSLLSLDLIEPLLQLLPLSNVISVLVLTVLCNIVEKGPAYCQRLWPGPLLSCLLNTLVLSDIEVVGQSLELLQLLFLYQPEAAQAFLQQSGLQALERHQEETQLRDRILALQQTAIHG", "length": 525, "header": "tr|A0A9J7JCV6-1|A0A9J7JCV6_CRIGR Isoform 1 of Transmembrane and coiled-coil domain-containing protein 6 isoform X1 OS=Cricetulus griseus OX=10029 GN=Tmco6 PE=4 SV=1 CANONICAL=A0A9J7JCV6-1" }, "isoforms": [ { "isoform_ac": "A0A8C2M3F2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCV6/entry#A0A8C2M3F2-1", "sequence": { "sequence": "MWSRRQGRLSTLACGVEELRCRRREREAALRKARREQQLVSKRLLREDAPEEAGGQSAAVLLGEAEVQQFLRLAQRGTDEKEREKALVSLRRGLQHPETQQTFIRLEGSMRTLVGLLTSNRALLQLEAARCLHELSHSEQSAVAEACLPATSYLLTYLSGHSSEFIELCLYTLGNLIVESEAVRKQLLPQGIVPALVACIQSPHVAVLEALGYALSQLLQSKEAPEKIIPSLLDSSLLQHMLRLMQPGPKLNLGVAVEFAWCLHYIICSQVNNAMLLSHGALPTLAMLLLDMAGAAQRMDDAGLELLACPVFRCLSNLLTEVPVEAMGEQMELRDERIVAALFILLQFFLQKQPTLLSEGLWLLNNLTANSPTLCTSLLSLDLIEPLLQLLPLSNVISVLVLTVLCNIVEKGPAYCQRLWPGPLLSCLLNTLVLSDIEVVGQSLELLQLLFLYQPEAAQAFLQQSGLQALERHQEETQLRDRILALQQTAIHG", "length": 493, "header": "tr|A0A8C2M3F2-1|A0A9J7JCV6_CRIGR Computationally mapped isoform of Transmembrane and coiled-coil domain-containing protein 6 isoform X1 OS=Cricetulus griseus OX=10029 GN=Tmco6 PE=4 SV=1 CANONICAL=A0A9J7JCV6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FEB9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCV6/entry#A0A9J7FEB9-1", "sequence": { "sequence": "MWSRRQGRLSTLACGVEELRCRRREREAALRKARREQQLVSKRLLREDAPEEAGGQSAAVLLGEAEVQQFLRLAQRGTDEKEREKALVSLRRGLQHPETQQTFIRLEGSMRTLVGLLTSNRALLQLEAARCLHELSHSEQSAVAEACLPATSYLLTYLSGHSSEFIELCLYTLGNLIVESEAVRKQLLPQGIVPALVACIQSPHVAVLEALGYALSQLLQSKEAPEKIIPENLGFGYFLAVFERSHWYLCGSCSQPTSAGSSLLDSSLLQHMLRLMQPGPKLNLGVAVEFAWCLHYIICSQVNNAMLLSHGALPTLAMLLLDMAGAAQRMDDAGLELLACPVFRCLSNLLTEVPVEAMGEQMELRDERIVAALFILLQFFLQKQPTLLSEGLWLLNNLTANSPTLCTSLLSLDLIEPLLQLLPLSNVISVLVLTVLCNIVEKGPAYCQRLWPGPLLSCLLNTLVLSDIEVVGQSLELLQLLFLYQPEAAQAFLQQSGLQALERHQEETQLRDRILALQQTAIHG", "length": 524, "header": "tr|A0A9J7FEB9-1|A0A9J7JCV6_CRIGR Computationally mapped isoform of Transmembrane and coiled-coil domain-containing protein 6 isoform X1 OS=Cricetulus griseus OX=10029 GN=Tmco6 PE=4 SV=1 CANONICAL=A0A9J7JCV6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J9C2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCV6/entry#A0A9J7J9C2-1", "sequence": { "sequence": "MWSRRQGRLSTLACGVEELRCRRREREAALRKARREQQLVSKRLLREDAPEEAGGQSAAVLLGEAEVQQFLRLAQRGTDEKEREKALVSLRRGLQHPETQQTFIRLEGSMRTLVGLLTSNRALLQLEAARCLHELSHSEQSAVAEACLPATSYLLTYLSGHSSEFIELCLYTLGNLIVESEAVRKQLLPQGIVPALVACIQSPHVAVLEALGYALSQLLQSKEAPEKIIPSLLDSSLLQHMLRLMQPGPKLNLGVAVEFAWCLHYIICSQVNNAMLLSHGALPTLAMLLLDMAGAAQRMDDAGLELQLACPVFRCLSNLLTEVPVEAMGEQMELRDERIVAALFILLQFFLQKQPTLLSEGLWLLNNLTANSPTLCTSLLSLDLIEPLLQLLPLSNVISVLVLTVLCNIVEKGPAYCQRLWPGPLLSCLLNTLVLSDIEVVGQSLELLQLLFLYQPEAAQAFLQQSGLQALERHQEETQLRDRILALQQTAIHG", "length": 494, "header": "tr|A0A9J7J9C2-1|A0A9J7J9C2_CRIGR Computationally mapped isoform of Transmembrane and coiled-coil domain-containing protein 6 isoform X3 OS=Cricetulus griseus OX=10029 GN=Tmco6 PE=4 SV=1 CANONICAL=A0A9J7JCV6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JCV6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCV6/entry#A0A9J7JCV6-1", "sequence": { "sequence": "MWSRRQGRLSTLACGVEELRCRRREREAALRKARREQQLVSKRLLREDAPEEAGGQSAAVLLGEAEVQQFLRLAQRGTDEKEREKALVSLRRGLQHPETQQTFIRLEGSMRTLVGLLTSNRALLQLEAARCLHELSHSEQSAVAEACLPATSYLLTYLSGHSSEFIELCLYTLGNLIVESEAVRKQLLPQGIVPALVACIQSPHVAVLEALGYALSQLLQSKEAPEKIIPENLGFGYFLAVFERSHWYLCGSCSQPTSAGSSLLDSSLLQHMLRLMQPGPKLNLGVAVEFAWCLHYIICSQVNNAMLLSHGALPTLAMLLLDMAGAAQRMDDAGLELQLACPVFRCLSNLLTEVPVEAMGEQMELRDERIVAALFILLQFFLQKQPTLLSEGLWLLNNLTANSPTLCTSLLSLDLIEPLLQLLPLSNVISVLVLTVLCNIVEKGPAYCQRLWPGPLLSCLLNTLVLSDIEVVGQSLELLQLLFLYQPEAAQAFLQQSGLQALERHQEETQLRDRILALQQTAIHG", "length": 525, "header": "tr|A0A9J7JCV6-1|A0A9J7JCV6_CRIGR Isoform 1 of Transmembrane and coiled-coil domain-containing protein 6 isoform X1 OS=Cricetulus griseus OX=10029 GN=Tmco6 PE=4 SV=1 CANONICAL=A0A9J7JCV6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K3H8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCV6/entry#A0A9J7K3H8-1", "sequence": { "sequence": "MVQQFLRLAQRGTDEKEREKALVSLRRGLQHPETQQTFIRLEGSMRTLVGLLTSNRALLQLEAARCLHELSHSEQSAVAEACLPATSYLLTYLSGHSSEFIELCLYTLGNLIVESEAVRKQLLPQGIVPALVACIQSPHVAVLEALGYALSQLLQSKEAPEKIIPENLGFGYFLAVFERSHWYLCGSCSQPTSAGSSLLDSSLLQHMLRLMQPGPKLNLGVAVEFAWCLHYIICSQVNNAMLLSHGALPTLAMLLLDMAGAAQRMDDAGLELQLACPVFRCLSNLLTEVPVEAMGEQMELRDERIVAALFILLQFFLQKQPTLLSEGLWLLNNLTANSPTLCTSLLSLDLIEPLLQLLPLSNVISVLVLTVLCNIVEKGPAYCQRLWPGPLLSCLLNTLVLSDIEVVGQSLELLQLLFLYQPEAAQAFLQQSGLQALERHQEETQLRDRILALQQTAIHG", "length": 460, "header": "tr|A0A9J7K3H8-1|A0A9J7JCV6_CRIGR Computationally mapped isoform of Transmembrane and coiled-coil domain-containing protein 6 isoform X1 OS=Cricetulus griseus OX=10029 GN=Tmco6 PE=4 SV=1 CANONICAL=A0A9J7JCV6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M3F2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3F2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M3F2", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M3F2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100757348", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757348", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 398, "end_pos": 400, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 398, "end_pos": 400 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7J604-1", "uniprot_ac": "A0A9J7J604", "uniprot_id": "A0A9J7J604_CRIGR", "mass": { "chemical_mass": 203092.0, "monoisotopic_mass": 203092.0 }, "refseq": { "ac": "XP_027243338", "name": "zinc finger SWIM domain-containing protein 8 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243338" }, "gene_names": [ { "name": "Zswim8", "type": "recommended", "evidence": [ { "id": "A0A9J7J604", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J604" } ] }, { "name": "Zswim8", "type": "synonym", "evidence": [ { "id": "XP_027243338", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243338" } ] } ], "protein_names": [ { "name": "Zinc finger SWIM domain-containing protein 8 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7J604", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J604/entry#names_and_taxonomy" } ] }, { "name": "zinc finger SWIM domain-containing protein 8 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027243338", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243338" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027243338", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243338" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J604", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J604" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Zswim8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J604", "locus": {} } ], "crossref": [ { "id": "100762983", "url": "https://www.ncbi.nlm.nih.gov/gene/100762983", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007527", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007527", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048370", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048370", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057945", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057945", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100762983", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762983", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7J604", "url": "https://www.orthodb.org/?gene=A0A9J7J604", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22619", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22619", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22619:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22619:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF21055", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21055", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25572", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25572", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027243338", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243338", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2M503", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M503", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M503-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M503-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EVF7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EVF7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EVF7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EVF7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J604", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J604", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J604-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J604-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J651", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J651", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J651-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J651-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MELMFAEWEDGERFSFEDSDRFEEDSLCSFISEAESLCQNWRGWRKQSAGPNSPTGGGGGGGSGGTRMRDGLVIPLVELSAKQVAFHIPFEVVEKVYPPVPEQLQLRIAFWSFPENEEDIRLYSCLANGSADEFQRGDQLFRMRAVKDPLQIGFHLSATVVPPQMVPPKGAYNVAVMFDRCRVTSCSCTCGAGAKWCTHVVALCLFRIHNASAVCLRAPVSESLSRLQRDQLQKFAQYLISELPQQILPTAQRLLDELLSSQSTAINTVCGAPDPTAGPSASDQSTWYLDESTLTDNIKKTLHKFCGPSPVVFSDVNSMYLSSTEPPAAAEWACLLRPLRGREPEGVWNLLSIVREMFKRRDSNAAPLLEILTDQCLTYEQITGWWYSVRTSASHSSASGHTGRSNGQSEVAAHACASMCDEMVTLWRLAVLDPALSPQRRRELCAQLRQWQLKVIENVKRGQHKKTLERLFPGFRPAVEACYFNWEEAYPLPGVTYSGTDRKLALCWARALPARPGASRSGGLEESRPRPLPTEPAVRPKEPGAKRKGLGEGVSSQRGPRRLSTEGGDKALHKMGPGGGKAKVLGGTGSGGKSSAGSGSKRRLSSEDSSLEPDLAEMSLDDSSLALGAEASTFGGFPESPPPCPPSVGSRGPSTFLPEPPDTYEEDAGVYFSEVPEPPAASAGHPSLLPGEVCTRDDLPSTDDSGSGLQKTKEAAPAVGEEDDDYQAYYLNAQDGAGGEEEKAEGGAGEEHDLFAGLKPLEQESRMEVLFACAEALHAHGYSNEASRLTVELAQDLLANPPDLKVEPPPAKGKKNKVSTSRQTWVATNTLTKAAFLLTVLSERPEHHNLAFRVGMFALELQRPPASTKALEVKLAYQESEVAALLKKIPLGPSEMSTMRCRAEELREGTLCDYRPVLPLMLASFIFDVLCAPVVSPTGSRPPSRNWNNEMPGDEELGFEAAVAALGMKTTVSEAEHPLLCEGTRREKGDLALALMITYKDDQAKLKKILDKLLDRESQTHKPQTLSSFYSSSRPATANQRSPSKHGAPSAPGALQPLTSGSAGPAQPGNVAGAGPGPTEGFTEKNVPESSPHSPCEGLPPEAALTPRPEGKVPSRLALGSRGGYNGRGWGSPGRPKKKHTGMASIDSSAPETTSDSSPTLSRRPLRGGWAPTSWGRGQDSDSISSSSSDSLGSSSSSGSRRASASGGARAKTVEVGRCYKGRRPESHAPHVPNQPSEAAAHFYFELAKTVLIKAGGNSSTSIFTHPSSSGGHQGPHRNLHLCAFEIGLYALGLHNFVSPNWLSRTYSSHVSWITGQAMEIGSAALTILVECWDGHLTPPEVASLADRASRARDSNMVRAAAELALSCLPHAHALNPNEIQRALVQCKEQDNLMLEKACMAVEEAAKGGGVYPEVLFEVAHQWFWLYEQTAGGSSTAREGATSCSGSGMRAAGEAGRGMPEGRGAPGAEPVTVAAAAVTAAATVVPVISVGSSLYPGPGLGHGHSPGLHPYTALQPHLPCSPQYLTHPAHPAHPMPHMPRPAVFPVPSSAYPQGVHPAFLGAQYPYSVTPPSLAATAVSFPVPSMAPITVHPYHTEPGLPLPTSVACEFWGQGAVSSVHPAPTFPAIQGASLPALTTQPSPLVSGGFPPPEEETHSQPVNPHSLHHLHAAYRVGMLALEMLGRRAHNDHPNNFSRSPPYTDDVKWLLGLAAKLGDRHGDAAAAEPHSCPQPSSSPGLPPTGAALSAGIHAVHPSPLNPPHPRRLRRLCECHPQCPQRLLPDTHGHDAVQRHPTEPQAQQTDQGVVAAGLSRDNHLLPLSLAPIGTYVGTQACGYGGPSHRGNDSWLDRSSPLNSLVAQTGSCSWAVAWGQDVSDLRSLGLGETALSGRGHWVASGIYLAFINI", "length": 1903, "header": "tr|A0A9J7J604-1|A0A9J7J604_CRIGR Isoform 1 of Zinc finger SWIM domain-containing protein 8 isoform X2 OS=Cricetulus griseus OX=10029 GN=Zswim8 PE=4 SV=1 CANONICAL=A0A9J7J604-1" }, "isoforms": [ { "isoform_ac": "A0A8C2M503-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J604/entry#A0A8C2M503-1", "sequence": { "sequence": "MELMFAEWEDGERFSFEDSDRFEEDSLCSFISEAESLCQNWRGWRKQSAGPNSPTGGGGGGGSGGTRMRDGLVIPLVELSAKQVAFHIPFEVVEKVYPPVPEQLQLRIAFWSFPENEEDIRLYSCLANGSADEFQRGDQLFRMRAVKDPLQIGFHLSATVVPPQMVPPKGAYNVAVMFDRCRVTSCSCTCGAGAKWCTHVVALCLFRIHNASAVCLRAPVSESLSRLQRDQLQKFAQYLISELPQQILPTAQRLLDELLSSQSTAINTVCGAPDPTAGPSASDQSTWYLDESTLTDNIKKTLHKFCGPSPVVFSDVNSMYLSSTEPPAAAEWACLLRPLRGREPEGVWNLLSIVREMFKRRDSNAAPLLEILTDQCLTYEQITGWWYSVRTSASHSSASGHTGRSNGQSEVAAHACASMCDEMVTLWRLAVLDPALSPQRRRELCAQLRQWQLKVIENVKRGQHKKTLERLFPGFRPAVEACYFNWEEAYPLPGVTYSGTDRKLALCWARALPARPGASRSGGLEESRPRPLPTEPAVRPKEPGAKRKGLGEGVSSQRGPRRLSTEGGDKALHKMGPGGGKAKVLGGTGSGGKSSAGSGSKRRLSSEDSSLEPDLAEMSLDDSSLALGAEASTFGGFPESPPPCPPSVGSRGPSTFLPEPPDTYEEDAGVYFSEVPEPPAASAGHPSLLPGEVCTRDDLPSTDDSGSGLQKTKEAAPAVGEEDDDYQAYYLNAQDGAGGEEEKAEGGAGEEHDLFAGLKPLEQESRMEVLFACAEALHAHGYSNEASRLTVELAQDLLANPPDLKVEPPPAKGKKNKVSTSRQTWVATNTLTKAAFLLTVLSERPEHHNLAFRVGMFALELQRPPASTKALEVKLAYQESEVAALLKKIPLGPSEMSTMRCRAEELREGTLCDYRPVLPLMLASFIFDVLCAPVVSPTGSRPPSRNWNNEMPGDEELGFEAAVAALGMKTTVSEAEHPLLCEGTRREKGDLALALMITYKDDQAKLKKILDKLLDRESQTHKPQTLSSFYSSSRPATANQRSPSKHGAPSAPGALQPLTSGSAGPAQPGNVAGAGPGPTEGFTEKNVPESSPHSPCEGLPPEAALTPRPEGKVPSRLALGSRGGYNGRGWGSPGRPKKKHTGMASIDSSAPETTSDSSPTLSRRPLRGGWAPTSWGRGQDSDSISSSSSDSLGSSSSSGSRRASASGGARAKTVEVGRCYKGRRPESHAPHVPNQPSEAAAHFYFELAKTVLIKAGGNSSTSIFTHPSSSGGHQGPHRNLHLCAFEIGLYALGLHNFVSPNWLSRTYSSHVSWITGQAMEIGSAALTILVECWDGHLTPPEVASLADRASRARDSNMVRAAAELALSCLPHAHALNPNEIQRALVQCKEQDNLMLEKACMAVEEAAKGGGVYPEVLFEVAHQWFWLYEQTAGGSSTAREGATSCSGSGMRAAGEAGRGMPEGRGAPGAEPVTVAAAAVTAAATVVPVISVGSSLYPGPGLGHGHSPGLHPYTALQPHLPCSPQYLTHPAHPAHPMPHMPRPAVFPVPSSAYPQGVHPAFLGAQYPYSVTPPSLAATAVSFPVPSMAPITVHPYHTEPGLPLPTSVALSSVHPAPTFPAIQGASLPALTTQPSPLVSGGFPPPEEETHSQPVNPHSLHHLHAAYRVGMLALEMLGRRAHNDHPNNFSRSPPYTDDVKWLLGLAAKLGVNYVHQFCVGAAKGVLSPFVLQEIVMETLQRLNPIHAHNHLRAPAFHQLVQRCQQAYMQYIHHRLIHLTPADYDDFVNAIRSARSAFCLTPMGMMQFNDILQNLKRSKQTKELWQRVSLEITTFSP", "length": 1832, "header": "tr|A0A8C2M503-1|A0A9J7J604_CRIGR Computationally mapped isoform of Zinc finger SWIM domain-containing protein 8 isoform X2 OS=Cricetulus griseus OX=10029 GN=Zswim8 PE=4 SV=1 CANONICAL=A0A9J7J604-1" }, "locus": {} }, { "isoform_ac": "A0A9J7EVF7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J604/entry#A0A9J7EVF7-1", "sequence": { "sequence": "MELMFAEWEDGERFSFEDSDRFEEDSLCSFISEAESLCQNWRGWRKQSAGPNSPTGGGGGGGSGGTRMRDGLVIPLVELSAKQVAFHIPFEVVEKVYPPVPEQLQLRIAFWSFPENEEDIRLYSCLANGSADEFQRGDQLFRMRAVKDPLQIGFHLSATVVPPQMVPPKGAYNVAVMFDRCRVTSCSCTCGAGAKWCTHVVALCLFRIHNASAVCLRAPVSESLSRLQRDQLQKFAQYLISELPQQILPTAQRLLDELLSSQSTAINTVCGAPDPTAGPSASDQSTWYLDESTLTDNIKKTLHKFCGPSPVVFSDVNSMYLSSTEPPAAAEWACLLRPLRGREPEGVWNLLSIVREMFKRRDSNAAPLLEILTDQCLTYEQITGWWYSVRTSASHSSASGHTGRSNGQSEVAAHACASMCDEMVTLWRLAVLDPALSPQRRRELCAQLRQWQLKVIENVKRGQHKKTLERLFPGFRPAVEACYFNWEEAYPLPGVTYSGTDRKLALCWARALPARPGASRSGGLEESRPRPLPTEPAVRPKEPGAKRKGLGEGVSSQRGPRRLSTEGGDKALHKMGPGGGKAKVLGGTGSGGKSSAGSGSKRRLSSEDSSLEPDLAEMSLDDSSLALGAEASTFGGFPESPPPCPPSVGSRGPSTFLPEPPDTYEEDAGVYFSEVPEPPAASAGHPSLLPGEVCTRDDLPSTDDSGSGLQKTKEAAPAVGEEDDDYQAYYLNAQDGAGGEEEKAEGGAGEEHDLFAGLKPLEQESRMEVLFACAEALHAHGYSNEASRLTVELAQDLLANPPDLKVEPPPAKGKKNKVSTSRQTWVATNTLTKAAFLLTVLSERPEHHNLAFRVGMFALELQRPPASTKALEVKLAYQESEVAALLKKIPLGPSEMSTMRCRAEELREGTLCDYRPVLPLMLASFIFDVLCAPVVSPTGSRPPSRNWNNEMPGDEELGFEAAVAALGMKTTVSEAEHPLLCEGTRREKGDLALALMITYKDDQAKLKKILDKLLDRESQTHKPQTLSSFYSSSRPATANQRSPSKHGAPSAPGALQPLTSGSAGPAQPGNVAGAGPGPTEGFTEKNVPESSPHSPCEGLPPEAALTPRPEGKVPSRLALGSRGGYNGRGWGSPGRPKKKHTGMASIDSSAPETTSDSSPTLSRRPLRGGWAPTSWGRGQDSDSISSSSSDSLGSSSSSGSRRASASGGARAKTVEVGRCYKGRRPESHAPHVPNQPSEAAAHFYFELAKTVLIKAGGNSSTSIFTHPSSSGGHQGPHRNLHLCAFEIGLYALGLHNFVSPNWLSRTYSSHVSWITGQAMEIGSAALTILVECWDGHLTPPEVASLADRASRARDSNMVRAAAELALSCLPHAHALNPNEIQRALVQCKEQDNLMLEKACMAVEEAAKGGGVYPEVLFEVAHQWFWLYEQTAGGSSTAREGATSCSGSGMRAAGEAGRGMPEGRGAPGAEPVTVAAAAVTAAATVVPVISVGSSLYPGPGLGHGHSPGLHPYTALQPHLPCSPQYLTHPAHPAHPMPHMPRPAVFPVPSSAYPQGVHPAFLGAQYPYSVTPPSLAATAVSFPVPSMAPITVHPYHTEPGLPLPTSVACEFWGQGAVSSVHPAPTFPAIQGASLPALTTQPSPLVSGGFPPPEEETHSQPVNPHSLHHLHAAYRVGMLALEMLGRRAHNDHPNNFSRSPPYTDDVKWLLGLAAKLGVNYVHQFCVGAAKGVLSPFVLQEIVMETLQRLNPIHAHNHLRAPAFHQLVQRCQQAYMQYIHHRLIHLTPADYDDFVNAIRSARSAFCLTPMGMMQFNDILQNLKRSKQTKELWQRVSLEITTFSP", "length": 1840, "header": "tr|A0A9J7EVF7-1|A0A9J7J604_CRIGR Computationally mapped isoform of Zinc finger SWIM domain-containing protein 8 isoform X2 OS=Cricetulus griseus OX=10029 GN=Zswim8 PE=4 SV=1 CANONICAL=A0A9J7J604-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J604-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J604/entry#A0A9J7J604-1", "sequence": { "sequence": "MELMFAEWEDGERFSFEDSDRFEEDSLCSFISEAESLCQNWRGWRKQSAGPNSPTGGGGGGGSGGTRMRDGLVIPLVELSAKQVAFHIPFEVVEKVYPPVPEQLQLRIAFWSFPENEEDIRLYSCLANGSADEFQRGDQLFRMRAVKDPLQIGFHLSATVVPPQMVPPKGAYNVAVMFDRCRVTSCSCTCGAGAKWCTHVVALCLFRIHNASAVCLRAPVSESLSRLQRDQLQKFAQYLISELPQQILPTAQRLLDELLSSQSTAINTVCGAPDPTAGPSASDQSTWYLDESTLTDNIKKTLHKFCGPSPVVFSDVNSMYLSSTEPPAAAEWACLLRPLRGREPEGVWNLLSIVREMFKRRDSNAAPLLEILTDQCLTYEQITGWWYSVRTSASHSSASGHTGRSNGQSEVAAHACASMCDEMVTLWRLAVLDPALSPQRRRELCAQLRQWQLKVIENVKRGQHKKTLERLFPGFRPAVEACYFNWEEAYPLPGVTYSGTDRKLALCWARALPARPGASRSGGLEESRPRPLPTEPAVRPKEPGAKRKGLGEGVSSQRGPRRLSTEGGDKALHKMGPGGGKAKVLGGTGSGGKSSAGSGSKRRLSSEDSSLEPDLAEMSLDDSSLALGAEASTFGGFPESPPPCPPSVGSRGPSTFLPEPPDTYEEDAGVYFSEVPEPPAASAGHPSLLPGEVCTRDDLPSTDDSGSGLQKTKEAAPAVGEEDDDYQAYYLNAQDGAGGEEEKAEGGAGEEHDLFAGLKPLEQESRMEVLFACAEALHAHGYSNEASRLTVELAQDLLANPPDLKVEPPPAKGKKNKVSTSRQTWVATNTLTKAAFLLTVLSERPEHHNLAFRVGMFALELQRPPASTKALEVKLAYQESEVAALLKKIPLGPSEMSTMRCRAEELREGTLCDYRPVLPLMLASFIFDVLCAPVVSPTGSRPPSRNWNNEMPGDEELGFEAAVAALGMKTTVSEAEHPLLCEGTRREKGDLALALMITYKDDQAKLKKILDKLLDRESQTHKPQTLSSFYSSSRPATANQRSPSKHGAPSAPGALQPLTSGSAGPAQPGNVAGAGPGPTEGFTEKNVPESSPHSPCEGLPPEAALTPRPEGKVPSRLALGSRGGYNGRGWGSPGRPKKKHTGMASIDSSAPETTSDSSPTLSRRPLRGGWAPTSWGRGQDSDSISSSSSDSLGSSSSSGSRRASASGGARAKTVEVGRCYKGRRPESHAPHVPNQPSEAAAHFYFELAKTVLIKAGGNSSTSIFTHPSSSGGHQGPHRNLHLCAFEIGLYALGLHNFVSPNWLSRTYSSHVSWITGQAMEIGSAALTILVECWDGHLTPPEVASLADRASRARDSNMVRAAAELALSCLPHAHALNPNEIQRALVQCKEQDNLMLEKACMAVEEAAKGGGVYPEVLFEVAHQWFWLYEQTAGGSSTAREGATSCSGSGMRAAGEAGRGMPEGRGAPGAEPVTVAAAAVTAAATVVPVISVGSSLYPGPGLGHGHSPGLHPYTALQPHLPCSPQYLTHPAHPAHPMPHMPRPAVFPVPSSAYPQGVHPAFLGAQYPYSVTPPSLAATAVSFPVPSMAPITVHPYHTEPGLPLPTSVACEFWGQGAVSSVHPAPTFPAIQGASLPALTTQPSPLVSGGFPPPEEETHSQPVNPHSLHHLHAAYRVGMLALEMLGRRAHNDHPNNFSRSPPYTDDVKWLLGLAAKLGDRHGDAAAAEPHSCPQPSSSPGLPPTGAALSAGIHAVHPSPLNPPHPRRLRRLCECHPQCPQRLLPDTHGHDAVQRHPTEPQAQQTDQGVVAAGLSRDNHLLPLSLAPIGTYVGTQACGYGGPSHRGNDSWLDRSSPLNSLVAQTGSCSWAVAWGQDVSDLRSLGLGETALSGRGHWVASGIYLAFINI", "length": 1903, "header": "tr|A0A9J7J604-1|A0A9J7J604_CRIGR Isoform 1 of Zinc finger SWIM domain-containing protein 8 isoform X2 OS=Cricetulus griseus OX=10029 GN=Zswim8 PE=4 SV=1 CANONICAL=A0A9J7J604-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J651-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J604/entry#A0A9J7J651-1", "sequence": { "sequence": "MELMFAEWEDGERFSFEDSDRFEEDSLCSFISEAESLCQNWRGWRKQSAGPNSPTGGGGGGGSGGTRMRDGLVIPLVELSAKQVAFHIPFEVVEKVYPPVPEQLQLRIAFWSFPENEEDIRLYSCLANGSADEFQRGDQLFRMRAVKDPLQIGFHLSATVVPPQMVPPKGAYNVAVMFDRCRVTSCSCTCGAGAKWCTHVVALCLFRIHNASAVCLRAPVSESLSRLQRDQLQKFAQYLISELPQQILPTAQRLLDELLSSQSTAINTVCGAPDPTAGPSASDQSTWYLDESTLTDNIKKTLHKFCGPSPVVFSDVNSMYLSSTEPPAAAEWACLLRPLRGREPEGVWNLLSIVREMFKRRDSNAAPLLEILTDQCLTYEQITGWWYSVRTSASHSSASGHTGRSNGQSEVAAHACASMCDEMVTLWRLAVLDPALSPQRRRELCAQLRQWQLKVIENVKRGQHKKTLERLFPGFRPAVEACYFNWEEAYPLPGVTYSGTDRKLALCWARALPARPGASRSGGLEESRPRPLPTEPAVRPKEPGAKRKGLGEGVSSQRGPRRLSTEGGDKALHKMGPGGGKAKVLGGTGSGGKSSAGSGSKRRLSSEDSSLEPDLAEMSLDDSSLALGAEASTFGGFPESPPPCPPSVGSRGPSTFLPEPPDTYEEDAGVYFSEVPEPPAASAGHPSLLPGEVCTRDDLPSTDDSGSGLQKTKEAAPAVGEEDDDYQAYYLNAQDGAGGEEEKAEGGAGEEHDLFAGLKPLEQESRMEVLFACAEALHAHGYSNEASRLTVELAQDLLANPPDLKVEPPPAKGKKNKVSTSRQTWVATNTLTKAAFLLTVLSERPEHHNLAFRVGMFALELQRPPASTKALEVKLAYQESEVAALLKKIPLGPSEMSTMRCRAEELREGTLCDYRPVLPLMLASFIFDVLCAPVVSPTGSRPPSRNWNNEMPGDEELGFEAAVAALGMKTTVSEAEHPLLCEGTRREKGDLALALMITYKDDQAKLKKILDKLLDRESQTHKPQTLSSFYSSSRPATANQRSPSKHGAPSAPGALQPLTSGSAGPAQPGNVAGAGPGPTEGFTEKNVPESSPHSPCEGLPPEAALTPRPEGKVPSRLALGSRGGYNGRGWGSPGRPKKKHTGMASIDSSAPETTSDSSPTLSRRPLRGGWAPTSWGRGQDSDSISSSSSDSLGSSSSSGSRRASASGGARAKTVEVGRCYKGRRPESHAPHVPNQPSEAAAHFYFELAKTVLIKAGGNSSTSIFTHPSSSGGHQGPHRNLHLCAFEIGLYALGLHNFVSPNWLSRTYSSHVSWITGQAMEIGSAALTILVECWDGHLTPPEVASLADRASRARDSNMVRAAAELALSCLPHAHALNPNEIQRALVQCKEQDNLMLEKACMAVEEAAKGGGVYPEVLFEVAHQWFWLYEQTAGGSSTAREGATSCSGSGMRAAGEAGRGMPEGRGAPGAEPVTVAAAAVTAAATVVPVISVGSSLYPGPGLGHGHSPGLHPYTALQPHLPCSPQYLTHPAHPAHPMPHMPRPAVFPVPSSAYPQGVHPAFLGAQYPYSVTPPSLAATAVSFPVPSMAPITVHPYHTEPGLPLPTSVALSSVHPAPTFPAIQGASLPALTTQPSPLVSGGFPPPEEETHSQPVNPHSLHHLHAAYRVGMLALEMLGRRAHNDHPNNFSRSPPYTDDVKWLLGLAAKLGDRHGDAAAAEPHSCPQPSSSPGLPPTGAALSAGIHAVHPSPLNPPHPRRLRRLCECHPQCPQRLLPDTHGHDAVQRHPTEPQAQQTDQGVVAAGLSRDNHLLPLSLAPIGTYVGTQACGYGGPSHRGNDSWLDRSSPLNSLVAQTGSCSWAVAWGQDVSDLRSLGLGETALSGRGHWVASGIYLAFINI", "length": 1895, "header": "tr|A0A9J7J651-1|A0A9J7J651_CRIGR Computationally mapped isoform of Zinc finger SWIM domain-containing protein 8 isoform X3 OS=Cricetulus griseus OX=10029 GN=Zswim8 PE=4 SV=1 CANONICAL=A0A9J7J604-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1079, "start_aa": "Thr", "end_pos": 1079, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1079", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1479, "start_aa": "Thr", "end_pos": 1479, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1479", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1569, "start_aa": "Thr", "end_pos": 1569, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1569", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 276, "start_aa": "Thr", "end_pos": 276, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr276", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 938, "start_aa": "Thr", "end_pos": 938, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr938", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M503", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M503" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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"https://www.uniprot.org/uniprotkb/A0A9J7J908/entry#names_and_taxonomy" } ] }, { "name": "transcription factor SPT20 homolog isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027250769", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250769" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027250769", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250769" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J908", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J908" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Supt20h", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J908", "locus": {} } ], "crossref": [ { "id": "A0A9J7J908", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7J908", "database": "AlphaFoldDB", "categories": [] }, { "id": "100769517", "url": "https://www.ncbi.nlm.nih.gov/gene/100769517", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR021950", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021950", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046468", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046468", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100769517", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769517", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7J908", "url": "https://www.orthodb.org/?gene=A0A9J7J908", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13526", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13526", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13526:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13526:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12090", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12090", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027250769", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250769", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2ML01", "url": "https://www.uniprot.org/uniprotkb/A0A8C2ML01", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2ML01-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2ML01-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F7Q2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7Q2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F7Q2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7Q2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H9B7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9B7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H9B7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9B7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J611", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J611", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J611-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J611-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J908", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J908", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J908-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J908-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JB13", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JB13", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JB13-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JB13-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQQALEQALDRAEYIVESARQRPPKRKYLSSGRKSIFQKLYDLYVEECEKEPEVKQKLRRNVNLLEKLVMQETLSCLVVNLYPGNEGYSLMLRGKNGSDSETIRLPYEEGELLEYLDAEELPPILVDLLEKSQVNIFHCGCVIAEIRDYRQSSNMKSPGYQSRHILLRPTMQTLVCDVHSITSDNHKWTQEDKLLLESQLILATAEPLCLDPSVAVACTANRLLYNRQKMNTRPMKRCLKRYSRSSLNRQQDLSHCPPPPQLRLLDFLQKRKERKAGQHYDLKISKAGNCVDMWKRSPCNLAVPSEVDVEKYAKVEKSIKSDDSQPTVWPAHDVKDDYVFECEGGTQYQKTKLTILQSLGDPLYYGKIQPWKADEENDSQMSPSHSSADDHSTWFIIGSKTDAERVVNQYQELVQNEAKCPVKMSHSSSGSASLNPGEETEQPETVSVQSSVLGKGVKHRPPPIKLPSSSGNSSSGNYFTAQQASSFLKSPTPPPSSKPSLSRKSSVELSQVSMLSPAALSPASSSQRSGTPKPSTPTPTPSSAPHPPDAQNSTPSTPSATPSPQDSGFTPQPTLFTQFAQQQRALSQAMPVTSIPLSTMVTSITTGSTVSPVMADSAGLNAISVVSSAGGAPALKSGSNSMLGCDTGTITPAGKSLCSSGLLPSGGLLTNALPGAMQVTSQSDIPFGLKNTSSLRPLNLLQLPGGSVIFNTEQQQPQPQLPQFVQQPQQPTTSSPQQPEEQGSEQGLTAQEQALTAQQAAVINLTGVGGFTPSQAAVLSQLSSAENRPEQSLLQQRLQLSSALQQQQQQQQQQQQQQQQIQQLRFLQHQMAMAAAAAQTAQLHRHRHSGGQSKSKVKRGMPTTPKF", "length": 867, "header": "tr|A0A9J7J908-1|A0A9J7J908_CRIGR Isoform 1 of Transcription factor SPT20 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=Supt20h PE=3 SV=1 CANONICAL=A0A9J7J908-1" }, "isoforms": [ { "isoform_ac": "A0A8C2ML01-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J908/entry#A0A8C2ML01-1", "sequence": { "sequence": "MQQALEQALDRAEYIVESARQRPPKRKYLSSGRKSIFQKLYDLYVEECEKEPEVKQKLRRNVNLLEKLVMQETLSCLVVNLYPGNEGYSLMLRGKNGSDSETIRLPYEEGELLEYLDAEELPPILVDLLEKSQVNIFHCGCVIAEIRDYRQSSNMKSPGYQSRHILLRPTMQTLVCDVHSITSDNHKWTQEDKLLLESQLILATAEPLCLDPSVAVACTANRLLYNRQKMNTRPMKRCLKRYSRSSLNRQQDLSHCPPPPQLRLLDFLQKRKERKAGQHYDLKISKAGNCVDMWKRSPCNLAVPSEVDVEKYAKVEKSIKSDDSQPTVWPAHDVKDDYVFECEGGTQYQKTKLTILQSLGDPLYYGKIQPWKADEENDSQMSPSHSSADDHSTWFIIGSKTDAERVVNQYQELVQNEAKCPVKMSHSSSGSASLNPGEETEQPETVSVQSSVLGKGVKHRPPPIKLPSSSGNSSSGNYFTAQQASSFLKSPTPPPSSKPSLSRKSSVELSQVSMLSPAALSPASSSQRHES", "length": 531, "header": "tr|A0A8C2ML01-1|A0A9J7J908_CRIGR Computationally mapped isoform of Transcription factor SPT20 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=Supt20h PE=3 SV=1 CANONICAL=A0A9J7J908-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F7Q2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J908/entry#A0A9J7F7Q2-1", "sequence": { "sequence": "MQQALEQALDRAEYIVESARQRPPKRKYLSSGRKSIFQKLYDLYVEECEKEPEVKKLRRNVNLLEKLVMQETLSCLVVNLYPGNEGYSLMLRGKNGSDSETIRLPYEEGELLEYLDAEELPPILVDLLEKSQVNIFHCGCVIAEIRDYRQSSNMKSPGYQSRHILLRPTMQTLVCDVHSITSDNHKWTQEDKLLLESQLILATAEPLCLDPSVAVACTANRLLYNRQKMNTRPMKRCLKRYSRSSLNRQQDLSHCPPPPQLRLLDFLQKRKERKAGQHYDLKISKAGNCVDMWKRSPCNLAVPSEVDVEKYAKVEKSIKSDDSQPTVWPAHDVKDDYVFECEGGTQYQKTKLTILQSLGDPLYYGKIQPWKADEENDSQMSPSHSSADDHSTWFIIGSKTDAERVVNQYQELVQNEAKCPVKMSHSSSGSASLNPGEETEQPETVSVQSSVLGKGVKHRPPPIKLPSSSGNSSSGNYFTAQQASSFLKSPTPPPSSKPSLSRKSSVELSQVSMLSPAALSPASSSQRSGTPKPSTPTPTPSSAPHPPDAQNSTPSTPSATPSPQDSGFTPQPTLFTQFAQQQRALSQAMPVTSIPLSTMVTSITTGSTVSPVMADSAGLNAISVVSSAGGAPALKSGSNSMLGCDTGTITPAGKSLCSSGLLPSGGLLTNALPGAMQVTSQSDIPFGLKNTSSLRPLNLLQLPGGSVIFNTEQQQPQPQLPQFVQQPQQPTTSSPQQPEEQGSEQGLTAQEQALTAQQAAVINLTGVGGFTPSQAAVLSQLSSAENRPEQSLLQQRLQLSSALQQQQQQQQQQQQQQQQIQQLRFLQHQMAMAAAAAQTAQLHRHRHSGGQSKSKVKRGMPTTPKF", "length": 866, "header": "tr|A0A9J7F7Q2-1|A0A9J7J908_CRIGR Computationally mapped isoform of Transcription factor SPT20 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=Supt20h PE=3 SV=1 CANONICAL=A0A9J7J908-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H9B7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J908/entry#A0A9J7H9B7-1", "sequence": { "sequence": "MQQALEQALDRAEYIVESARQRPPKRKYLSSGRKSIFQKLYDLYVEECEKEPEVKQKLRRNVNLLEKLVMQETLSCLVVNLYPGNEGYSLMLRGKNGSDSETIRLPYEEGELLEYLDAEELPPILVDLLEKSQVNIFHCGCVIAEIRDYRQSSNMKSPGYQSRHILLRPTMQTLVCDVHSITSDNHKWTQEDKLLLESQLILATAEPLCLDPSVAVACTANRLLYNRQKMNTRPMKRCLKRYSRSSLNRQQDLSHCPPPPQLRLLDFLQKRKERKAGQHYDLKISKAGNCVDMWKRSPCNLAVPSEVDVEKYAKVEKSIKSDDSQPTVWPAHDVKDDYVFECEGGTQYQKTKLTILQSLGDPLYYGKIQPWKADEENDSQMSPSHSSADDHSTWFIIGSKTDAERVVNQYQELVQNEAKCPVKMSHSSSGSASLNPGEETEPETVSVQSSVLGKGVKHRPPPIKLPSSSGNSSSGNYFTAQQASSFLKSPTPPPSSKPSLSRKSSVELSQVSMLSPAALSPASSSQRSGTPKPSTPTPTPSSAPHPPDAQNSTPSTPSATPSPQDSGFTPQPTLFTQFAQQQRALSQAMPVTSIPLSTMVTSITTGSTVSPVMADSAGLNAISVVSSAGGAPALKSGSNSMLGCDTGTITPAGKSLCSSGLLPSGGLLTNALPGAMQVTSQSDIPFGLKNTSSLRPLNLLQLPGGSVIFNTEQQQPQPQLPQFVQQPQQPTTSSPQQPEEQGSEQGLTAQEQALTAQQAAVINLTGVGGFTPSQAAVLSQLSSAENRPEQSLLQQRLQLSSALQQQQQQQQQQQQQQQQIQQLRFLQHQMAMAAAAAQTAQLHRHRHSGGQSKSKVKRGMPTTPKF", "length": 866, "header": "tr|A0A9J7H9B7-1|A0A9J7J908_CRIGR Computationally mapped isoform of Transcription factor SPT20 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=Supt20h PE=3 SV=1 CANONICAL=A0A9J7J908-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J611-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J908/entry#A0A9J7J611-1", "sequence": { "sequence": "MQALEQALDRAEYIVESARQRPPKRKYLSSGRKSIFQKLYDLYVEECEKEPEVKQKLRRNVNLLEKLVMQETLSCLVVNLYPGNEGYSLMLRGKNGSDSETIRLPYEEGELLEYLDAEELPPILVDLLEKSQVNIFHCGCVIAEIRDYRQSSNMKSPGYQSRHILLRPTMQTLVCDVHSITSDNHKWTQEDKLLLESQLILATAEPLCLDPSVAVACTANRLLYNRQKMNTRPMKRCLKRYSRSSLNRQQDLSHCPPPPQLRLLDFLQKRKERKAGQHYDLKISKAGNCVDMWKRSPCNLAVPSEVDVEKYAKVEKSIKSDDSQPTVWPAHDVKDDYVFECEGGTQYQKTKLTILQSLGDPLYYGKIQPWKADEENDSQMSPSHSSADDHSTWFIIGSKTDAERVVNQYQELVQNEAKCPVKMSHSSSGSASLNPGEETEQPETVSVQSSVLGKGVKHRPPPIKLPSSSGNSSSGNYFTAQQASSFLKSPTPPPSSKPSLSRKSSVELSQVSMLSPAALSPASSSQRSGTPKPSTPTPTPSSAPHPPDAQNSTPSTPSATPSPQDSGFTPQPTLFTQFAQQQRALSQAMPVTSIPLSTMVTSITTGSTVSPVMADSAGLNAISVVSSAGGAPALKSGSNSMLGCDTGTITPAGKSLCSSGLLPSGGLLTNALPGAMQVTSQSDIPFGLKNTSSLRPLNLLQLPGGSVIFNTEQQQPQPQLPQFVQQPQQPTTSSPQQPEEQGSEQGLTAQEQALTAQQAAVINLTGVGGFTPSQAAVLSQLSSAENRPEQSLLQQRLQLSSALQQQQQQQQQQQQQQQQIQQLRFLQHQMAMAAAAAQTAQLHRHRHSGGQSKSKVKRGMPTTPKF", "length": 866, "header": "tr|A0A9J7J611-1|A0A9J7J611_CRIGR Computationally mapped isoform of Transcription factor SPT20 homolog isoform X3 OS=Cricetulus griseus OX=10029 GN=Supt20h PE=3 SV=1 CANONICAL=A0A9J7J908-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J908-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J908/entry#A0A9J7J908-1", "sequence": { "sequence": "MQQALEQALDRAEYIVESARQRPPKRKYLSSGRKSIFQKLYDLYVEECEKEPEVKQKLRRNVNLLEKLVMQETLSCLVVNLYPGNEGYSLMLRGKNGSDSETIRLPYEEGELLEYLDAEELPPILVDLLEKSQVNIFHCGCVIAEIRDYRQSSNMKSPGYQSRHILLRPTMQTLVCDVHSITSDNHKWTQEDKLLLESQLILATAEPLCLDPSVAVACTANRLLYNRQKMNTRPMKRCLKRYSRSSLNRQQDLSHCPPPPQLRLLDFLQKRKERKAGQHYDLKISKAGNCVDMWKRSPCNLAVPSEVDVEKYAKVEKSIKSDDSQPTVWPAHDVKDDYVFECEGGTQYQKTKLTILQSLGDPLYYGKIQPWKADEENDSQMSPSHSSADDHSTWFIIGSKTDAERVVNQYQELVQNEAKCPVKMSHSSSGSASLNPGEETEQPETVSVQSSVLGKGVKHRPPPIKLPSSSGNSSSGNYFTAQQASSFLKSPTPPPSSKPSLSRKSSVELSQVSMLSPAALSPASSSQRSGTPKPSTPTPTPSSAPHPPDAQNSTPSTPSATPSPQDSGFTPQPTLFTQFAQQQRALSQAMPVTSIPLSTMVTSITTGSTVSPVMADSAGLNAISVVSSAGGAPALKSGSNSMLGCDTGTITPAGKSLCSSGLLPSGGLLTNALPGAMQVTSQSDIPFGLKNTSSLRPLNLLQLPGGSVIFNTEQQQPQPQLPQFVQQPQQPTTSSPQQPEEQGSEQGLTAQEQALTAQQAAVINLTGVGGFTPSQAAVLSQLSSAENRPEQSLLQQRLQLSSALQQQQQQQQQQQQQQQQIQQLRFLQHQMAMAAAAAQTAQLHRHRHSGGQSKSKVKRGMPTTPKF", "length": 867, "header": "tr|A0A9J7J908-1|A0A9J7J908_CRIGR Isoform 1 of Transcription factor SPT20 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=Supt20h PE=3 SV=1 CANONICAL=A0A9J7J908-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JB13-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J908/entry#A0A9J7JB13-1", "sequence": { "sequence": "MQETLSCLVVNLYPGNEGYSLMLRGKNGSDSETIRLPYEEGELLEYLDAEELPPILVDLLEKSQVNIFHCGCVIAEIRDYRQSSNMKSPGYQSRHILLRPTMQTLVCDVHSITSDNHKWTQEDKLLLESQLILATAEPLCLDPSVAVACTANRLLYNRQKMNTRPMKRCLKRYSRSSLNRQQDLSHCPPPPQLRLLDFLQKRKERKAGQHYDLKISKAGNCVDMWKRSPCNLAVPSEVDVEKYAKVEKSIKSDDSQPTVWPAHDVKDDYVFECEGGTQYQKTKLTILQSLGDPLYYGKIQPWKADEENDSQMSPSHSSADDHSTWFIIGSKTDAERVVNQYQELVQNEAKCPVKMSHSSSGSASLNPGEETEQPETVSVQSSVLGKGVKHRPPPIKLPSSSGNSSSGNYFTAQQASSFLKSPTPPPSSKPSLSRKSSVELSQVSMLSPAALSPASSSQRSGTPKPSTPTPTPSSAPHPPDAQNSTPSTPSATPSPQDSGFTPQPTLFTQFAQQQRALSQAMPVTSIPLSTMVTSITTGSTVSPVMADSAGLNAISVVSSAGGAPALKSGSNSMLGCDTGTITPAGKSLCSSGLLPSGGLLTNALPGAMQVTSQSDIPFGLKNTSSLRPLNLLQLPGGSVIFNTEQQQPQPQLPQFVQQPQQPTTSSPQQPEEQGSEQGLTAQEQALTAQQAAVINLTGVGGFTPSQAAVLSQLSSAENRPEQSLLQQRLQLSSALQQQQQQQQQQQQQQQQIQQLRFLQHQMAMAAAAAQTAQLHRHRHSGGQSKSKVKRGMPTTPKF", "length": 798, "header": "tr|A0A9J7JB13-1|A0A9J7JB13_CRIGR Computationally mapped isoform of Transcription factor SPT20 homolog isoform X5 OS=Cricetulus griseus OX=10029 GN=Supt20h PE=3 SV=1 CANONICAL=A0A9J7J908-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 492, "start_aa": "Thr", "end_pos": 492, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr492", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 538, "start_aa": "Thr", "end_pos": 538, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr538", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 540, "start_aa": "Thr", "end_pos": 540, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr540", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 557, "start_aa": "Thr", "end_pos": 557, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr557", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 561, "start_aa": "Thr", "end_pos": 561, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr561", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2ML01", "url": "https://www.uniprot.org/uniprotkb/A0A8C2ML01" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2ML01", "url": "https://www.uniprot.org/uniprotkb/A0A8C2ML01" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100769517", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769517", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of transcription by RNA polymerase II", "id": "GO:0006357", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006357", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J908", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J908" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "transcription coregulator activity", "id": "GO:0003712", "url": 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This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027248513", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248513" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J7H1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7H1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ankrd52", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7H1", "locus": {} } ], "crossref": [ { "id": "A0A9J7J7H1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7J7H1", "database": "AlphaFoldDB", "categories": [] }, { "id": "100751169", "url": "https://www.ncbi.nlm.nih.gov/gene/100751169", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": 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"length": 1076, "header": "tr|A0A8C2MR25-1|A0A9J7J7H1_CRIGR Computationally mapped isoform of Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C isoform X2 OS=Cricetulus griseus OX=10029 GN=Ankrd52 PE=4 SV=1 CANONICAL=A0A9J7J7H1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J7H1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7H1/entry#A0A9J7J7H1-1", "sequence": { "sequence": "MGILSITDQFRSGSGPLPESWLSLQPPLVQAIFSRDVEEVRSLLSQKENINVLDQERRTPLHAAAYVGDVPILQLLLMSGANVNAKDTLWLTPLHRAAASRNEKVLGLLLAHSADVNARDKLWQTPLHVAAANRATKCAEALAPLLSSLNVADRSGRSALHHAVHSGHLETVNLLLNKGASLNVCDKKERQPLHWAAFLGHLEVLKLLAARGADLSCKDRKGYGLLHTAAASGQIEVVKYLLRMGAEIDEPNAFGNTALHIACYLGQDAVAIELVNAGANVNQPNDKGFTPLHVAAVSTNGALCLELLVNNGADVNYQSKEGKSPLHMAAIHGRFTRSQILIQNGSEIDCADKFGNTPLHVAARYGHELLISTLMTNGADTARRGIHDMFPLHLAVLFGFSDCCRKLLSSGQLYSIVSSLSNEHVLSAGFDINTPDNLGRTCLHAAASGGNVECLNLLLSSGADLRRRDKFGRTPLHYAAANGSYQCAVTLVTAGAGVNEADCKGCSPLHYAAASDTYRRAEPHTASSHDAEEDELLKESRRKEAFFCLEFLLDNGADPSLRDRQGYTAVHYAAAYGNRQNLELLLEMSFNCLEDVESTVPVSPLHLAAYNGHCEALKTLAETLVNLDVRDHKGRTALFLATERGSTECVEVLTAHGASALIKERKRKWTPLHAAAASGHTDSLHLLIDSGERADITDVMDAYGQTPLMLAIMNGHVDCVHLLLEKGSTADAADLRGRTALHRGAVTGCEDCLAALLDHDAFVLCRDFKGRTPIHLASACGHTAVLRTLLQAALSTDPLDAGVDYSGYSPMHWASYTGHEDCLELLLEHSPFSYLEGNPFTPLHCAVINNQDSTTEMLLGALGAKIVNSRDAKGRTPLHAAAFADNVSGLRMLLQHQAEVNATDHTGRTALMTAAENGQTAAVEFLLYRGKADLTVLDENKNTALHLACSKGHEKCALMILAETQDLGLINATNSALQMPLHIAARNGLASVVQALLSRGATVLAVDEEGHTPALACAPNKDVADCLALILSTMKPFPPKDAVSPFSFSLLKNCGIAAAKTVGGCGALPHGASCPYSQERHGAIGLDGCYSE", "length": 1092, "header": "tr|A0A9J7J7H1-1|A0A9J7J7H1_CRIGR Isoform 1 of Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C isoform X2 OS=Cricetulus griseus OX=10029 GN=Ankrd52 PE=4 SV=1 CANONICAL=A0A9J7J7H1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MR25", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MR25" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100751169", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751169", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 344, "end_pos": 346, "annotation": "n_glycosylation_sequon" }, { "start_pos": 482, "end_pos": 484, "annotation": "n_glycosylation_sequon" }, { "start_pos": 886, "end_pos": 888, "annotation": "n_glycosylation_sequon" }, { "start_pos": 901, "end_pos": 903, "annotation": "n_glycosylation_sequon" }, { "start_pos": 971, "end_pos": 973, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], 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"total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7J2B9-1", "uniprot_ac": "A0A9J7J2B9", "uniprot_id": "A0A9J7J2B9_CRIGR", "mass": { "chemical_mass": 127286.0, "monoisotopic_mass": 127286.0 }, "refseq": { "ac": "XP_003515176", "name": "coiled-coil domain-containing protein 158 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003515176" }, "gene_names": [ { "name": "Ccdc158", "type": "recommended", "evidence": [ { "id": "A0A9J7J2B9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J2B9" } ] }, { "name": "Ccdc158", "type": "synonym", "evidence": [ { "id": "XP_003515176", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003515176" } ] } ], "protein_names": [ { "name": "Coiled-coil domain-containing protein 158 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7J2B9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J2B9/entry#names_and_taxonomy" } ] }, { "name": "coiled-coil domain-containing protein 158 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003515176", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003515176" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003617393.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003515176", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003515176" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J2B9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J2B9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ccdc158", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J2B9", "locus": {} } ], "crossref": [ { "id": "A0A9J7J2B9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7J2B9", "database": "AlphaFoldDB", "categories": [] }, { "id": "100769646", "url": "https://www.ncbi.nlm.nih.gov/gene/100769646", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR031809", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031809", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100769646", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769646", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "CIIQCQE", "url": "https://omabrowser.org/oma/group/CIIQCQE/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7J2B9", "url": "https://www.orthodb.org/?gene=A0A9J7J2B9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47615", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47615", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47615:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47615:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15921", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15921", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003515176", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003515176", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MR37", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MR37", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MR37-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MR37-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HCZ1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCZ1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HCZ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCZ1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J2B9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J2B9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J2B9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J2B9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MESKAYESNNEDLLSSGVTPNGGSSSSFFVSSTRGTIIENASSTGTLAQMPFFPKYDVEFDPQRKVIPYPGKEHIERVLEEYSHQVKDLQKRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESHSQEDLRNQLQNTVHELEAAKCLKEDMLKDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKICEHDSMSTIHFRNLGSAISKILRELDTEISYLKGRIFPVEDQLETLKTESQNKIELLLQQHQDRIEQLISEHEIEITGLTEKASSARSQANSIESQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELRETKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRKLELQEFKILKDKKDAKIRELEARMSDLELEKVKLVNAGSERLRAVKDIRQERDQLLNEVKTSRTELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKTMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKVQFLEEAVTSANKEKHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRLKLQHTLDVKELQGPGYTSNPSMKPRLLQPASVTRSHSNVPSSQSTASFISHHSVKTNTLKEDPTRDLKQLLQELRSVINEEPAMPLSKTEEDGRTPSLGALDDRVRDCITESSLRVELCHRSNNSLRESTEGSKSSETLSREPVTLHAGDMDDPSSCFTFTSTASPSMKISTSRSFSSSPKKSPVHSLLTSSAEESVGSTSPYRTTKSINSPSSTKDSQSPSLETTGKTCRKLQNRLESLQTLVEDLQLKNQAMSSMIRNQEKRIQKVKDQEKMLLK", "length": 1113, "header": "tr|A0A9J7J2B9-1|A0A9J7J2B9_CRIGR Isoform 1 of Coiled-coil domain-containing protein 158 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ccdc158 PE=4 SV=1 CANONICAL=A0A9J7J2B9-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MR37-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J2B9/entry#A0A8C2MR37-1", "sequence": { "sequence": "MESKAYESNNEDLLSSGVTPNGGSSSSFFVSSTRGTIIENASSTGTLAQMPFFPKYDVEFDPQRKVIPYPGKEHIERVLEEYSHQVKDLQKRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESHSQEDLRNQLQNTVHELEAAKCLKEDMLKDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKICEHDSMSTIHFRNLGSAISKILRELDTEISYLKGRIFPVEDQLETLKTESQNKIELLLQQHQDRIEQLISEHEIEITGLTEKASSARSQANSIESQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELRETKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRKLELQEFKILKDKKDAKIRELEARMSDLELEKVKLVNAGSERLRAVKDIRQERDQLLNEVKTSRTELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKTMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKVQFLEEAVTSANKEKHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKFAECQDIIQRQEQESVRLKLQHTLDVKELQGPGYTSNPSMKPRLLQPASVTRSHSNVPSSQSTASFISHHSVKTNTLKEDPTRDLKQLLQELRSVINEEPAMPLSKTEEDGRTPSLGALDDRVRDCITESSLRVELCHRSNNSLRESTEGSKSSETLSREPVTLHAGDMDDPSSCFTFTSTASPSMKISTSRSFSSSPKKSPVHSLLTSSAEESVGSTSPYRTTKSINSPSSTKDSQSPSLETTGKTCRKLQNRLESLQTLVEDLQLKNQAMSSMIRNQEKRIQKVKDQEKMLLK", "length": 1109, "header": "tr|A0A8C2MR37-1|A0A9J7J2B9_CRIGR Computationally mapped isoform of Coiled-coil domain-containing protein 158 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ccdc158 PE=4 SV=1 CANONICAL=A0A9J7J2B9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HCZ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J2B9/entry#A0A9J7HCZ1-1", "sequence": { "sequence": "MESKAYESNNEDLLSSGVTPNGGSSSSFFVSSTRGTIIENASSTGTLAQMPFFPKYDVEFDPQRKVIPYPGKEHIERVLEEYSHQVKDLQKRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESHSQEDLRNQLQNTVHELEAAKCLKEDMLKDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKICEHDSMSTIHFRNLGSAISKILRELDTEISYLKGRIFPVEDQLETLKTESQNKIELLLQQHQDRIEQLISEHEIEITGLTEKASSARSQANSIESQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELRETKRMYEDKEPPEFPFTNLDQ", "length": 354, "header": "tr|A0A9J7HCZ1-1|A0A9J7J2B9_CRIGR Computationally mapped isoform of Coiled-coil domain-containing protein 158 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ccdc158 PE=4 SV=1 CANONICAL=A0A9J7J2B9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J2B9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J2B9/entry#A0A9J7J2B9-1", "sequence": { "sequence": "MESKAYESNNEDLLSSGVTPNGGSSSSFFVSSTRGTIIENASSTGTLAQMPFFPKYDVEFDPQRKVIPYPGKEHIERVLEEYSHQVKDLQKRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESHSQEDLRNQLQNTVHELEAAKCLKEDMLKDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKICEHDSMSTIHFRNLGSAISKILRELDTEISYLKGRIFPVEDQLETLKTESQNKIELLLQQHQDRIEQLISEHEIEITGLTEKASSARSQANSIESQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELRETKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRKLELQEFKILKDKKDAKIRELEARMSDLELEKVKLVNAGSERLRAVKDIRQERDQLLNEVKTSRTELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKTMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKVQFLEEAVTSANKEKHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRLKLQHTLDVKELQGPGYTSNPSMKPRLLQPASVTRSHSNVPSSQSTASFISHHSVKTNTLKEDPTRDLKQLLQELRSVINEEPAMPLSKTEEDGRTPSLGALDDRVRDCITESSLRVELCHRSNNSLRESTEGSKSSETLSREPVTLHAGDMDDPSSCFTFTSTASPSMKISTSRSFSSSPKKSPVHSLLTSSAEESVGSTSPYRTTKSINSPSSTKDSQSPSLETTGKTCRKLQNRLESLQTLVEDLQLKNQAMSSMIRNQEKRIQKVKDQEKMLLK", "length": 1113, "header": "tr|A0A9J7J2B9-1|A0A9J7J2B9_CRIGR Isoform 1 of Coiled-coil domain-containing protein 158 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ccdc158 PE=4 SV=1 CANONICAL=A0A9J7J2B9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MR37", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MR37" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MR37", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MR37" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100769646", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769646", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "D3ZHH5-1", "protein_name": "Coiled-coil domain containing 158", "gene_name": "Ccdc158", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDSKTCESKKEDLLSSGVISKGGSSSPFFVTSTHGAIIENTSSAGTLTQIPFFPKYEVELDSPRKSTSYPGKEHIERVLEEYSQQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEELRNQLQNTVHELEAAKSLKEDMLKDSSTQIEQLRKLMLSHEGVLQDIRSVLVDFEEASGKKICEHDSMSTMHFRSLGSAISKILRELDTEISFLKGRIFPVEDQLETLKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSVQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELRETKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKNECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMNLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALRLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRKLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIRQERDQLLNEVKTSRTELNNLSEDYEVLKRNFRNKSEEMESTTNRLKMQLKSAQSELEQTRNTLKTMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKVQFLEEAVTSANKEKHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRLKLQHTLDVKELQGPGYTSNSSMKPRLLQPASVARSHSNVPSSQSTASFLSHHSLKTNTLKEDPTRDLKQLLQELRSVINEEPAMPLSKTEEETPSLGALEDRVRDCITDSSLRSELCHRSNNSLRESTEGSKSSETLSREPVALHPGDLEDPSSCFTFTSTASPSVKISASRSFNSSPKKSPVHSLLTSSAEESVGSTPQYRSAKPVHSSNSAKDSQSPSLETTGKTCRKLQNRLESLQTLVEDLQLKNQAMSSMIRNQEKRIQKVKDQEKMLLK", "length": 1111 }, "evidence": [ { "id": "A0A9J7J2B9", "url": "https://omabrowser.org/oma/group/A0A9J7J2B9/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q5M9N0-1", "protein_name": "Coiled-coil domain-containing protein 158", "gene_name": "CCDC158", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MESKAWESNNEDLLSSSGVTSNGGSSSSFFVSSIRGTIIENTSSAGTLTQVPFFPKYEVELDSPRKIIPSPGKEHFERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLKDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKICEHDSMSTLHFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQMEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKTEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDNRNMEVQRLEALLKALKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTISDLTTSLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMTEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRMELKELKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRSELNNLSEEYEVLKRNFRNKSEEMEMTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVTNMEVALDKASLQFAECQDIIQRQEQESVRLKLQHTLDIKELQGPGYTSNSSLKPRLLQPASVTRSHSNVPSSQSTASFLSHHSTKANTLKEDPTRDLKQLLQELRSVINEEPAVSLSKTEEDGRTSLGALEDRVRDCITESSLRSDMCHRSNNSLRDSTEGSKSSETLSREPVTLHAGDREDPSGCFTFTSAASPSVKNSASRSFNSSPKKSPVHSLLTSSVEGSIGSTSQYRSAKPIHSSDSVKDSQSPPIETTGKTCRKLQNRLESLQTLVEDLQLKNQAMSSMIRNQEKRIQKVKDQEKMLLK", "length": 1113 }, "evidence": [ { "id": "A0A9J7J2B9", "url": "https://omabrowser.org/oma/group/A0A9J7J2B9/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q8CDI6-1", "protein_name": "Coiled-coil domain-containing protein 158", "gene_name": "Ccdc158", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESKACESKNEDLLPSGITSKGGSSSPFFVTSTHGTIIENTSSTGTLTQMPFFPKYEVELDSPRKSTPYPGKEHIERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEESRNQLQNTVRELEAAKCLKEDMLKDSSTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKICEHDSMSTMHFRSLGSAISKILRELDTEISFLKGRIFPVEDQLETLKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSVQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELRESKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMNLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRKLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIRHERDQLLNEVKTSRTELNHLSEDYEVLKRNFRNKSEEMESTTNRLKMQLKSAQSELEQTRNTLKTMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKVQFLEEAVTSANKERHFLKEEKSKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKFAECQDIIQRQEQESVRLKLQHTLDVKELQGPGYTSNSSVKPRLLQPASVTRSHSNIPSSQSTTSFLSHHSIKTNTPKEDPTRDLKQLLQELRTVINEEPAMALSKTEEDGRTPSLGALEDRVRDCITESSLRAELCHRSNNSLRESTEGSKSSETLSREPVPLHPGDLEDPSSCFTFTSTASPSGKMSASRSFSSSPKKSPVHSLLTSSAEESVNSTPQYRSTKPIHSPTSAKDSQSPSLETTGKTCQKLQNRLESLQTLVEDLQLKNQAMSSMIRNQEKRIQKVKDQEKMLLK", "length": 1109 }, "evidence": [ { "id": "A0A9J7J2B9", "url": "https://omabrowser.org/oma/group/A0A9J7J2B9/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 40, "end_pos": 42, "annotation": "n_glycosylation_sequon" }, { "start_pos": 456, "end_pos": 458, "annotation": "n_glycosylation_sequon" }, { "start_pos": 572, "end_pos": 574, "annotation": "n_glycosylation_sequon" }, { "start_pos": 684, "end_pos": 686, "annotation": "n_glycosylation_sequon" }, { "start_pos": 94, "end_pos": 96, "annotation": "n_glycosylation_sequon" }, { "start_pos": 959, "end_pos": 961, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 40, "end_pos": 42 }, { "start_pos": 456, "end_pos": 458 }, { "start_pos": 572, "end_pos": 574 }, { "start_pos": 684, "end_pos": 686 }, { "start_pos": 94, "end_pos": 96 }, { "start_pos": 959, "end_pos": 961 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7JEJ2-1", "uniprot_ac": "A0A9J7JEJ2", "uniprot_id": "A0A9J7JEJ2_CRIGR", "mass": { "chemical_mass": 59221.0, "monoisotopic_mass": 59221.0 }, "refseq": { "ac": "XP_027265425", "name": "dual specificity protein phosphatase CDC14B isoform X10", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027265425" }, "gene_names": [ { "name": "Cdc14b", "type": "recommended", "evidence": [ { "id": "A0A9J7JEJ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEJ2" } ] }, { "name": "Cdc14b", "type": "synonym", "evidence": [ { "id": "XP_027265425", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027265425" } ] } ], "protein_names": [ { "name": "Dual specificity protein phosphatase CDC14B isoform X10", "type": "synonym", "evidence": [ { "id": "A0A9J7JEJ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEJ2/entry#names_and_taxonomy" } ] }, { "name": "dual specificity protein phosphatase CDC14B isoform X10", "type": "synonym", "evidence": [ { "id": "XP_027265425", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027265425" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027265425", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027265425" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JEJ2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEJ2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cdc14b", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEJ2", "locus": {} } ], "crossref": [ { "id": "A0A9J7JEJ2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JEJ2", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd14499", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd14499", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd17657", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17657", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100759761", "url": "https://www.ncbi.nlm.nih.gov/gene/100759761", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000387", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000387", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003595", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003595", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016130", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016130", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020422", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020422", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029021", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029021", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029260", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029260", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044506", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044506", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050561", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050561", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100759761", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759761", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JEJ2", "url": "https://www.orthodb.org/?gene=A0A9J7JEJ2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23339", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23339", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14671", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14671", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22785", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22785", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027265425", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027265425", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "20629", "url": "https://www.rhea-db.org/rhea/20629", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "47004", "url": "https://www.rhea-db.org/rhea/47004", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A8C2MJL8", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJL8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MJL8-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MJL8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MS78", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MS78", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MS78-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MS78-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FPX5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPX5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FPX5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPX5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FQ41", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ41", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FQ41-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQ41-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FQS0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQS0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FQS0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQS0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FSN2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSN2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FSN2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FSN2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FST8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FST8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FST8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FST8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FUN2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUN2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FUN2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUN2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GX86", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GX86", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GX86-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GX86-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JEJ2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEJ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JEJ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEJ2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JKT0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKT0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JKT0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKT0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JLH5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLH5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JLH5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLH5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JMC5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMC5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JMC5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMC5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKRKSERRSAWATAPPCSRRSSSASPGVKKSRSSTPQELHRLEQLDDLYLDITDRLCFAILYSRPKSASNEHYFSIDNELEYENFYADFGPLNLAMVYRYCCKINKKLKSITMLRKKIIHFTGTDQRKQANAAFLIGCYMVIFLGRTPEDAYRTLIFGDTAYIPFRDAAYGSCSFYITLLDCFHAVKKAMQYGFFNFNAFNLDEYEHYEKAENGDFNWIIPERFLAFCGPHSRSRLESGYHQHSPETYIPYFKNHNVTTIIRLNKRMYDAKRFTEAGFDHHDLFFPDGSTPAESIVQEFLDICENVEGAIAVHCKAGLGRTGTLIGCYLMKHYRMTAAESIAWLRICRPGSVIGPQQQFLVMKQSSLWLEGDYFRQRLRGQENGPLSAALSKQLSDIDDISINGLENQDKQESELYSDDDEISGVTQGDRLRALKSRRQSKANTVPLTVILQSSVQSCKAPEPNLSGSAGITKRTTRSASGKSSLKSLAPWRERRRRSALQQMPLLALCPAVSRTKTVLR", "length": 520, "header": "tr|A0A9J7JEJ2-1|A0A9J7JEJ2_CRIGR Isoform 1 of Dual specificity protein phosphatase CDC14B isoform X10 OS=Cricetulus griseus OX=10029 GN=Cdc14b PE=3 SV=1 CANONICAL=A0A9J7JEJ2-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MJL8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEJ2/entry#A0A8C2MJL8-1", "sequence": { "sequence": "MKRKSERRSAWATAPPCSRRSSSASPGVKKSRSSTPQELHRLEQLDDLYLDITDRLCFAILYSRPKSASNEHYFSIDNELEYENFYADFGPLNLAMVYRYCCKINKKLKSITMLRKKIIHFTGTDQRKQANAAFLIGCYMVIFLGRTPEDAYRTLIFGDTAYIPFRDAAYGSCSFYITLLDCFHAVKKAMQYGFFNFNAFNLDEYEHYEKAENGDFNWIIPERFLAFCGPHSRSRLESGYHQHSPETYIPYFKNHNVTTIIRLNKRMYDAKRFTEAGFDHHDLFFPDGSTPAESIVQEFLDICENVEGAIAVHCKAGLGRTGTLIGCYLMKHYRMTAAESIAWLRICRPGSVIGPQQQFLVMKQSSLWLEGDYFRQRLRGQENGPLSAALSKQLSDIDDISINGLENQDKQESELYSDDDEISGVTQGDRLRALKSRRQSKANTVPLTCPLAVLTSALCSVAIWWIVCDYILPTLLFCLDGFRTQ", "length": 485, "header": "tr|A0A8C2MJL8-1|A0A9J7JEJ2_CRIGR Computationally mapped isoform of Dual specificity protein phosphatase CDC14B isoform X10 OS=Cricetulus griseus OX=10029 GN=Cdc14b PE=3 SV=1 CANONICAL=A0A9J7JEJ2-1" }, "locus": {} }, { "isoform_ac": "A0A8C2MS78-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEJ2/entry#A0A8C2MS78-1", "sequence": { "sequence": "MSREGAGTPRVAEVIRDRLCFAILYSRPKSASNEHYFSIDNELEYENFYADFGPLNLAMVYRYCCKINKKLKSITMLRKKIIHFTGTDQRKQANAAFLIGCYMVIFLGRTPEDAYRTLIFGDTAYIPFRDAAYGSCSFYITLLDCFHAVKKAMQYGFFNFNAFNLDEYEHYEKAENGDFNWIIPERFLAFCGPHSRSRLESGYHQHSPETYIPYFKNHNVTTIIRLNKRMYDAKRFTEAGFDHHDLFFPDGSTPAESIVQEFLDICENVEGAIAVHCKAGLGRTGTLIGCYLMKHYRMTAAESIAWLRICRPGSVIGPQQQFLVMKQSSLWLEGDYFRQRLRGQENGPLSAALSKQLSDIDDISINGLENQDKQESELYSDDDEISGVTQGDRLRALKSRRQSKANTVPLTCPLAVLTSALCSVAIWWIVCDYILPTLLFCLDGFRTQ", "length": 448, "header": "tr|A0A8C2MS78-1|A0A9J7JEJ2_CRIGR Computationally mapped isoform of Dual specificity protein phosphatase CDC14B isoform X10 OS=Cricetulus griseus OX=10029 GN=Cdc14b PE=3 SV=1 CANONICAL=A0A9J7JEJ2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FPX5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEJ2/entry#A0A9J7FPX5-1", "sequence": { "sequence": "MKRKSERRSAWATAPPCSRRSSSASPGVKKSRSSTPQELHRLEQLDDLYLDITDRLCFAILYSRPKSASNEHYFSIDNELEYENFYADFGPLNLAMVYRYCCKINKKLKSITMLRKKIIHFTGTDQRKQANAAFLIGCYMVIFLGRTPEDAYRTLIFGDTAYIPFRDAAYGSCSFYITLLDCFHAVKKAMQYGFFNFNAFNLDEYEHYEKAENGDFNWIIPERFLAFCGPHSRSRLESGYHQHSPETYIPYFKNHNVTTIIRLNKRMYDAKRFTEAGFDHHDLFFPDGSTPAESIVQEFLDICENVEGAIAVHCKAGLGRTGTLIGCYLMKHYRMTAAESIAWLRICRPGSVIGPQQQFLVMKQSSLWLEGDYFRQRLRGQENGPLSAALSKQLSDIDDISINGLENQDKQESELYSDDDEISGVTQGDRLRALKSRRQSKANTVPLTLHSFDELLDDRCSVQTEMTSDGWLSRAVTFLDRLLVWLGIRRA", "length": 491, "header": "tr|A0A9J7FPX5-1|A0A9J7JEJ2_CRIGR Computationally mapped isoform of Dual specificity protein phosphatase CDC14B isoform X10 OS=Cricetulus griseus OX=10029 GN=Cdc14b PE=3 SV=1 CANONICAL=A0A9J7JEJ2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FQ41-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEJ2/entry#A0A9J7FQ41-1", "sequence": { "sequence": "MVYRYCCKINKKLKSITMLRKKIIHFTGTDQRKQANAAFLIGCYMVIFLGRTPEDAYRTLIFGDTAYIPFRDAAYGSCSFYITLLDCFHAVKKAMQYGFFNFNAFNLDEYEHYEKAENGDFNWIIPERFLAFCGPHSRSRLESGYHQHSPETYIPYFKNHNVTTIIRLNKRMYDAKRFTEAGFDHHDLFFPDGSTPAESIVQEFLDICENVEGAIAVHCKAGLGRTGTLIGCYLMKHYRMTAAESIAWLRICRPGSVIGPQQQFLVMKQSSLWLEGDYFRQRLRGQENGPLSAALSKQLSDIDDISINGLENQDKQESELYSDDDEISGVTQGDRLRALKSRRQSKANTVPLTVILQSSVQSCKAPEPNLSGSAGITKRTTRSASGKSSLKSLAPWRERRRRSALQQMPLLALCPAVSRTKTVLR", "length": 425, "header": "tr|A0A9J7FQ41-1|A0A9J7JEJ2_CRIGR Computationally mapped isoform of Dual specificity protein phosphatase CDC14B isoform X10 OS=Cricetulus griseus OX=10029 GN=Cdc14b PE=3 SV=1 CANONICAL=A0A9J7JEJ2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FQS0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEJ2/entry#A0A9J7FQS0-1", "sequence": { "sequence": "MKRKSERRSAWATAPPCSRRSSSASPGVKKSRSSTPQELHRLEQLDDLYLDITDRLCFAILYSRPKSASNEHYFSIDNELEYENFYADFGPLNLAMVYRYCCKINKKLKSITMLRKKIIHFTGTDQRKQANAAFLIGCYMVIFLGRTPEDAYRTLIFGDTAYIPFRDAAYGSCSFYITLLDCFHAVKKAMQYGFFNFNAFNLDEYEHYEKAENGDFNWIIPERFLAFCGPHSRSRLESGYHQHSPETYIPYFKNHNVTTIIRLNKRMYDAKRFTEAGFDHHDLFFPDGSTPAESIVQEFLDICENVEGAIAVHCKAGLGRTGTLIGCYLMKHYRMTAAESIAWLRICRPGSVIGPQQQFLVMKQSSLWLEGDYFRQRLRGQENGPLSAALSKQLSDIDDISINGLENQDKQESELYSDDDEISGVTQGDRLRALKSRRQSKANTVPLTPAVSRTKTVLR", "length": 459, "header": "tr|A0A9J7FQS0-1|A0A9J7JEJ2_CRIGR Computationally mapped isoform of Dual specificity protein phosphatase CDC14B isoform X10 OS=Cricetulus griseus OX=10029 GN=Cdc14b PE=3 SV=1 CANONICAL=A0A9J7JEJ2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FSN2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEJ2/entry#A0A9J7FSN2-1", "sequence": { "sequence": "MLWSHEPGGRGDPSGGRGDPSRPKSASNEHYFSIDNELEYENFYADFGPLNLAMVYRYCCKINKKLKSITMLRKKIIHFTGTDQRKQANAAFLIGCYMVIFLGRTPEDAYRTLIFGDTAYIPFRDAAYGSCSFYITLLDCFHAVKKAMQYGFFNFNAFNLDEYEHYEKAENGDFNWIIPERFLAFCGPHSRSRLESGYHQHSPETYIPYFKNHNVTTIIRLNKRMYDAKRFTEAGFDHHDLFFPDGSTPAESIVQEFLDICENVEGAIAVHCKAGLGRTGTLIGCYLMKHYRMTAAESIAWLRICRPGSVIGPQQQFLVMKQSSLWLEGDYFRQRLRGQENGPLSAALSKQLSDIDDISINGLENQDKQESELYSDDDEISGVTQGDRLRALKSRRQSKANTVPLTVILQSSVQSCKAPEPNLSGSAGITKRTTRSASGKSSLKSLAPWRERRRRSALQQMPLLALCPAVSRTKTVLR", "length": 478, "header": "tr|A0A9J7FSN2-1|A0A9J7JEJ2_CRIGR Computationally mapped isoform of Dual specificity protein phosphatase CDC14B isoform X10 OS=Cricetulus griseus OX=10029 GN=Cdc14b PE=3 SV=1 CANONICAL=A0A9J7JEJ2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FST8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEJ2/entry#A0A9J7FST8-1", "sequence": { "sequence": "MSREGAGTPRVAEVIRDRLCFAILYSRPKSASNEHYFSIDNELEYENFYADFGPLNLAMVYRYCCKINKKLKSITMLRKKIIHFTGTDQRKQANAAFLIGCYMVIFLGRTPEDAYRTLIFGDTAYIPFRDAAYGSCSFYITLLDCFHAVKKAMQYGFFNFNAFNLDEYEHYEKAENGDFNWIIPERFLAFCGPHSRSRLESGYHQHSPETYIPYFKNHNVTTIIRLNKRMYDAKRFTEAGFDHHDLFFPDGSTPAESIVQEFLDICENVEGAIAVHCKAGLGRTGTLIGCYLMKHYRMTAAESIAWLRICRPGSVIGPQQQFLVMKQSSLWLEGDYFRQRLRGQENGPLSAALSKQLSDIDDISINGLENQDKQESELYSDDDEISGVTQGDRLRALKSRRQSKANTVPLTVILQSSVQSCKAPEPNLSGSAGITKRTTRSASGKSSLKSPAVSRTKTVLR", "length": 461, "header": "tr|A0A9J7FST8-1|A0A9J7JEJ2_CRIGR Computationally mapped isoform of Dual specificity protein phosphatase CDC14B isoform X10 OS=Cricetulus griseus OX=10029 GN=Cdc14b PE=3 SV=1 CANONICAL=A0A9J7JEJ2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FUN2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEJ2/entry#A0A9J7FUN2-1", "sequence": { "sequence": "MKRKSERRSAWATAPPCSRRSSSASPGVKKSRSSTPQELHRLEQLDDLYLDITDRLCFAILYSRPKSASNEHYFSIDNELEYENFYADFGPLNLAMVYRYCCKINKKLKSITMLRKKIIHFTGTDQRKQANAAFLIGCYMVIFLGRTPEDAYRTLIFGDTAYIPFRDAAYGSCSFYITLLDCFHAVKKAMQYGFFNFNAFNLDEYEHYEKAENGDFNWIIPERFLAFCGPHSRSRLESGYHQHSPETYIPYFKNHNVTTIIRLNKRMYDAKRFTEAGFDHHDLFFPDGSTPAESIVQEFLDICENVEGAIAVHCKAGLGRTGTLIGCYLMKHYRMTAAESIAWLRICRPGSVIGPQQQFLVMKQSSLWLEGDYFRQRLRGQENGPLSAALSKQLSDIDDISINGLENQDKQESELVMEPSRSRCCYCCKCC", "length": 431, "header": "tr|A0A9J7FUN2-1|A0A9J7JEJ2_CRIGR Computationally mapped isoform of Dual specificity protein phosphatase CDC14B isoform X10 OS=Cricetulus griseus OX=10029 GN=Cdc14b PE=3 SV=1 CANONICAL=A0A9J7JEJ2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GX86-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEJ2/entry#A0A9J7GX86-1", "sequence": { "sequence": "MKRKSERRSAWATAPPCSRRSSSASPGVKKSRSSTPQELHRLEQLDDLYLDITDRLCFAILYSRPKSASNEHYFSIDNELEYENFYADFGPLNLAMVYRYCCKINKKLKSITMLRKKIIHFTGTDQRKQANAAFLIGCYMVIFLGRTPEDAYRTLIFGDTAYIPFRDAAYGSCSFYITLLDCFHAVKKAMQYGFFNFNAFNLDEYEHYEKAENGDFNWIIPERFLAFCGPHSRSRLESGYHQHSPETYIPYFKNHNVTTIIRLNKRMYDAKRFTEAGFDHHDLFFPDGSTPAESIVQEFLDICENVEGAIAVHCKAGLGRTGTLIGCYLMKHYRMTAAESIAWLRICRPGSVIGPQQQFLVMKQSSLWLEGDYFRQRLRGQENGPLSAALSKQLSDIDDISINGLENQDKQESELYSDDDEISGVTQGDRLRALKSRRQSKANTVPLTVILQSSVQSCKAPEPNLSGSAGITKRTTRSASGKSSLKSVSTLTLKCCIRISLAHHHTSNPAVSRTKTVLR", "length": 519, "header": "tr|A0A9J7GX86-1|A0A9J7JEJ2_CRIGR Computationally mapped isoform of Dual specificity protein phosphatase CDC14B isoform X10 OS=Cricetulus griseus OX=10029 GN=Cdc14b PE=3 SV=1 CANONICAL=A0A9J7JEJ2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JEJ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEJ2/entry#A0A9J7JEJ2-1", "sequence": { "sequence": "MKRKSERRSAWATAPPCSRRSSSASPGVKKSRSSTPQELHRLEQLDDLYLDITDRLCFAILYSRPKSASNEHYFSIDNELEYENFYADFGPLNLAMVYRYCCKINKKLKSITMLRKKIIHFTGTDQRKQANAAFLIGCYMVIFLGRTPEDAYRTLIFGDTAYIPFRDAAYGSCSFYITLLDCFHAVKKAMQYGFFNFNAFNLDEYEHYEKAENGDFNWIIPERFLAFCGPHSRSRLESGYHQHSPETYIPYFKNHNVTTIIRLNKRMYDAKRFTEAGFDHHDLFFPDGSTPAESIVQEFLDICENVEGAIAVHCKAGLGRTGTLIGCYLMKHYRMTAAESIAWLRICRPGSVIGPQQQFLVMKQSSLWLEGDYFRQRLRGQENGPLSAALSKQLSDIDDISINGLENQDKQESELYSDDDEISGVTQGDRLRALKSRRQSKANTVPLTVILQSSVQSCKAPEPNLSGSAGITKRTTRSASGKSSLKSLAPWRERRRRSALQQMPLLALCPAVSRTKTVLR", "length": 520, "header": "tr|A0A9J7JEJ2-1|A0A9J7JEJ2_CRIGR Isoform 1 of Dual specificity protein phosphatase CDC14B isoform X10 OS=Cricetulus griseus OX=10029 GN=Cdc14b PE=3 SV=1 CANONICAL=A0A9J7JEJ2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JKT0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEJ2/entry#A0A9J7JKT0-1", "sequence": { "sequence": "MKRKSERRSAWATAPPCSRRSSSASPGVKKSRSSTPQELHRLEQLDDLYLDITDRLCFAILYSRPKSASNEHYFSIDNELEYENFYADFGPLNLAMVYRYCCKINKKLKSITMLRKKIIHFTGTDQRKQANAAFLIGCYMVIFLGRTPEDAYRTLIFGDTAYIPFRDAAYGSCSFYITLLDCFHAVKKAMQYGFFNFNAFNLDEYEHYEKAENGDFNWIIPERFLAFCGPHSRSRLESGYHQHSPETYIPYFKNHNVTTIIRLNKRMYDAKRFTEAGFDHHDLFFPDGSTPAESIVQEFLDICENVEGAIAVHCKAGLGRTGTLIGCYLMKHYRMTAAESIAWLRICRPGSVIGPQQQFLVMKQSSLWLEGDYFRQRLRGQENGPLSAALSKQLSDIDDISINGLENQDKQESELYSDDDEISGVTQGDRLRALKSRRQSKANTVPLTNRTITTTTFVSRPFAITVAALGLLGCLKATVQPFQGLRQSCVKVRNR", "length": 495, "header": "tr|A0A9J7JKT0-1|A0A9J7JEJ2_CRIGR Computationally mapped isoform of Dual specificity protein phosphatase CDC14B isoform X10 OS=Cricetulus griseus OX=10029 GN=Cdc14b PE=3 SV=1 CANONICAL=A0A9J7JEJ2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JLH5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEJ2/entry#A0A9J7JLH5-1", "sequence": { "sequence": "MKRKSERRSAWATAPPCSRRSSSASPGVKKSRSSTPQELHRLEQLDDLYLDITDRLCFAILYSRPKSASNEHYFSIDNELEYENFYADFGPLNLAMVYRYCCKINKKLKSITMLRKKIIHFTGTDQRKQANAAFLIGCYMVIFLGRTPEDAYRTLIFGDTAYIPFRDAAYGSCSFYITLLDCFHAVKKAMQYGFFNFNAFNLDEYEHYEKAENGDFNWIIPERFLAFCGPHSRSRLESGYHQHSPETYIPYFKNHNVTTIIRLNKRMYDAKRFTEAGFDHHDLFFPDGSTPAESIVQEFLDICENVEGAIAVHCKAGLGRTGTLIGCYLMKHYRMTAAESIAWLRICRPGSVIGPQQQFLVMKQSSLWLEGDYFRQRLRGQENGPLSAALSKQLSDIDDISINGLENQDKQESELYSDDDEISGVTQGDRLRALKSRRQSKANTVPLTVILQSSVQSCKAPEPNLSGSAGITKRTTRSASGKSSLKSPAVSRTKTVLR", "length": 498, "header": "tr|A0A9J7JLH5-1|A0A9J7JEJ2_CRIGR Computationally mapped isoform of Dual specificity protein phosphatase CDC14B isoform X10 OS=Cricetulus griseus OX=10029 GN=Cdc14b PE=3 SV=1 CANONICAL=A0A9J7JEJ2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JMC5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEJ2/entry#A0A9J7JMC5-1", "sequence": { "sequence": "MSREGAGTPRVAEVIRDRLCFAILYSRPKSASNEHYFSIDNELEYENFYADFGPLNLAMVYRYCCKINKKLKSITMLRKKIIHFTGTDQRKQANAAFLIGCYMVIFLGRTPEDAYRTLIFGDTAYIPFRDAAYGSCSFYITLLDCFHAVKKAMQYGFFNFNAFNLDEYEHYEKAENGDFNWIIPERFLAFCGPHSRSRLESGYHQHSPETYIPYFKNHNVTTIIRLNKRMYDAKRFTEAGFDHHDLFFPDGSTPAESIVQEFLDICENVEGAIAVHCKAGLGRTGTLIGCYLMKHYRMTAAESIAWLRICRPGSVIGPQQQFLVMKQSSLWLEGDYFRQRLRGQENGPLSAALSKQLSDIDDISINGLENQDKQESELYSDDDEISGVTQGDRLRALKSRRQSKANTVPLTVILQSSVQSCKAPEPNLSGSAGITKRTTRSASGKSSLKSLAPWRERRRRSALQQMPLLALCPAVSRTKTVLR", "length": 483, "header": "tr|A0A9J7JMC5-1|A0A9J7JEJ2_CRIGR Computationally mapped isoform of Dual specificity protein phosphatase CDC14B isoform X10 OS=Cricetulus griseus OX=10029 GN=Cdc14b PE=3 SV=1 CANONICAL=A0A9J7JEJ2-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 290, "start_aa": "Thr", "end_pos": 290, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr290", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MS78", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MS78" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MS78", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MS78" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100759761", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759761", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein serine/threonine phosphatase activity", "id": "GO:0004722", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004722", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JEJ2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEJ2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 256, "end_pos": 258, "annotation": "n_glycosylation_sequon" }, { "start_pos": 464, "end_pos": 466, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "20629", "name": "", "equation": "O-phospho-L-seryl-[protein] + H2O = L-seryl-[protein] + phosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [ "G3GV48-1", "G3GWQ6-1", "G3H060-1", "G3H9Q0-1", "G3H7Z6-1", "G3I157-1", "G3HCQ6-1", "A0A8C2MA30-1", "G3HMJ7-1", "G3I434-1", "G3H622-1", "G3HKY7-1", "G3GRD1-1", "G3I4H5-1", "G3H8H2-1", "A0A9J7F890-1", "A0A8C2MW37-1", "A0A061I6V7-1", "A0A9J7GBP5-1", "A0A9J7JFN8-1", "A0A9J7G7W0-1", "A0A9J7GE78-1", "A0A061HVT3-1", "A0A061HX98-1", "A0A3L7HX32-1", "A0A8C2LYQ8-1", "A0A8C2M5N0-1", "A0A9J7JBH1-1", "A0A9J7EY47-1", "A0A8C2LGL9-1", "A0A8C2LVB9-1", "A0A8C2QH88-1", "A0A9J7F130-1", "A0A9J7FMB0-1", "A0A9J7FWJ6-1", "A0A9J7FXD0-1", "A0A9J7G243-1", "A0A9J7GEM4-1", "A0A9J7G1B8-1", "A0A9J7K1J8-1", "A0A9J7K5S1-1", "A0A9J7EZL1-1", "A0A8C2QCP2-1", "A0A8C2LTP5-1", "A0A8C2N2E5-1", "A0A8C2QBZ1-1", "A0A3L7HBF4-1", "A0A9J7GK96-1", "A0A8C2LI03-1", "A0A9J7G0U7-1", "A0A9J7GD33-1", "A0A9J7H9S5-1", "A0A9J7HCJ8-1", "A0A9J7GJY7-1", "A0A9J7JYW1-1", "A0A3L7I513-1", "A0A9J7FKB3-1", "A0A8C2LGY1-1", "A0A3L7HEM4-1" ], "evidence": [ { "id": "20629", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/20629" } ] }, { "id": "47004", "name": "", "equation": "O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [ "G3GV48-1", "G3GWQ6-1", "G3H060-1", "G3H9Q0-1", "G3H622-1", "G3HKY7-1", "G3H7Z6-1", "G3I157-1", "G3HCQ6-1", "A0A8C2MA30-1", "G3HMJ7-1", "A0A8C2MF90-1", "A0A9J7GX39-1", "G3I434-1", "G3GRD1-1", "G3I4H5-1", "G3H8H2-1", "A0A9J7F890-1", "A0A8C2MW37-1", "A0A061I6V7-1", "A0A9J7GBP5-1", "A0A9J7JFN8-1", "A0A9J7G7W0-1", "A0A9J7GE78-1", "A0A061HX98-1", "A0A3L7HEJ5-1", "A0A3L7HX32-1", "A0A8C2LYQ8-1", "A0A8C2M5N0-1", "A0A9J7JBH1-1", "A0A8C2ME51-1", "A0A8C2MTQ0-1", "A0A3L7IJ01-1", "A0A9J7EY47-1", "A0A8C2LGL9-1", "A0A8C2LVB9-1", "A0A8C2QH88-1", "A0A9J7F130-1", "A0A9J7FMB0-1", "A0A9J7FWJ6-1", "A0A9J7FXD0-1", "A0A9J7G243-1", "A0A9J7GEM4-1", "A0A9J7G1B8-1", "A0A9J7K1J8-1", "A0A9J7K5S1-1", "A0A9J7EZL1-1", "A0A9J7F6Q7-1", "A0A8C2N2E5-1", "A0A8C2LTP5-1", "A0A8C2QBZ1-1", "A0A8C2QCP2-1", "A0A3L7HBF4-1", "A0A3L7HC66-1", "A0A9J7GK96-1", "A0A8C2LI03-1", "A0A9J7G0U7-1", "A0A9J7GD33-1", "A0A9J7H9S5-1", "A0A9J7HCJ8-1", "A0A9J7GJY7-1", "A0A9J7JXQ8-1", "A0A9J7JYW1-1", "A0A9J7FKB3-1", "A0A8C2LGY1-1", "A0A3L7HEM4-1" ], "evidence": [ { "id": "47004", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/47004" } ] } ], "reaction_participants": [], "reaction_enzymes": [ { "uniprot_ac": "A0A061HVT3", "gene_name": "Ppm1k", "activity": [ { "ec_number": "3.1.3.16", "activity": "O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate.", "evidence": [ { "id": "A0A061HVT3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061HVT3" } ] }, { "ec_number": "3.1.3.52", "activity": "O-phospho-L-seryl-[3-methyl-2-oxobutanoate dehydrogenase] + H2O = L-seryl-[3-methyl-2-oxobutanoate dehydrogenase] + phosphate.", "evidence": [ { "id": "A0A061HVT3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061HVT3" } ] }, { "ec_number": "3.1.3.16", "activity": "", "evidence": [ { "id": "A0A061HVT3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061HVT3" } ] }, { "ec_number": "3.1.3.52", "activity": "", "evidence": [ { "id": "A0A061HVT3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061HVT3" } ] } ] }, { "uniprot_ac": "A0A061HX98", "gene_name": "Dusp9", "activity": [ { "ec_number": "3.1.3.16", "activity": "O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate.", "evidence": [ { "id": "A0A061HX98", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061HX98" } ] }, { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "A0A061HX98", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061HX98" } ] }, { "ec_number": "3.1.3.16", "activity": "", "evidence": [ { "id": "A0A061HX98", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061HX98" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "A0A061HX98", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061HX98" } ] } ] }, { "uniprot_ac": "A0A061I6V7", "gene_name": "Pgam5", "activity": [ { "ec_number": "3.1.3.16", "activity": "O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate.", "evidence": [ { "id": "A0A061I6V7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061I6V7" } ] }, { "ec_number": "3.1.3.16", "activity": "", "evidence": [ { "id": "A0A061I6V7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061I6V7" } ] } ] }, { "uniprot_ac": "A0A3L7HBF4", "gene_name": "Cpped1", "activity": [ { "ec_number": "3.1.3.16", "activity": "O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate.", "evidence": [ { "id": "A0A3L7HBF4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HBF4" } ] }, { "ec_number": "3.1.3.16", "activity": "", "evidence": [ { "id": "A0A3L7HBF4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HBF4" } ] } ] }, { "uniprot_ac": "A0A3L7HC66", "gene_name": "Ppp6c", "activity": [ { "ec_number": "3.1.3.16", "activity": "O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate.", "evidence": [ { "id": "A0A3L7HC66", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HC66" } ] }, { "ec_number": "3.1.3.16", "activity": "", "evidence": [ { "id": "A0A3L7HC66", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HC66" } ] } ] }, { "uniprot_ac": "A0A3L7HEJ5", "gene_name": "Dusp2", "activity": [ { "ec_number": "3.1.3.16", "activity": "O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate.", "evidence": [ { "id": "A0A3L7HEJ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HEJ5" } ] }, { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "A0A3L7HEJ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HEJ5" } ] }, { "ec_number": "3.1.3.16", "activity": "", "evidence": [ { "id": "A0A3L7HEJ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HEJ5" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "A0A3L7HEJ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HEJ5" } ] } ] }, { "uniprot_ac": "A0A3L7HEM4", "gene_name": "Ctdspl2", "activity": [ { "ec_number": "3.1.3.16", "activity": "O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate.", "evidence": [ { "id": "A0A3L7HEM4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HEM4" } ] }, { "ec_number": "3.1.3.16", "activity": "", "evidence": [ { "id": "A0A3L7HEM4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HEM4" } ] } ] }, { "uniprot_ac": "A0A3L7HX32", "gene_name": "Dusp8", "activity": [ { "ec_number": "3.1.3.16", "activity": "O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate.", "evidence": [ { "id": "A0A3L7HX32", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HX32" } ] }, { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "A0A3L7HX32", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HX32" } ] }, { "ec_number": "3.1.3.16", "activity": "", "evidence": [ { "id": "A0A3L7HX32", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HX32" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "A0A3L7HX32", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HX32" } ] } ] }, { "uniprot_ac": "A0A3L7I513", "gene_name": "Pdxp", "activity": [ { "ec_number": "3.1.3.74", "activity": "pyridoxal 5'-phosphate + H2O = pyridoxal + phosphate.", "evidence": [ { "id": "A0A3L7I513", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7I513" } ] }, { "ec_number": "3.1.3.16", "activity": "O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate.", "evidence": [ { "id": "A0A3L7I513", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7I513" } ] }, { "ec_number": "3.1.3.74", "activity": "", "evidence": [ { "id": "A0A3L7I513", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7I513" } ] }, { "ec_number": "3.1.3.16", "activity": "", "evidence": [ { "id": "A0A3L7I513", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7I513" } ] } ] }, { "uniprot_ac": "A0A3L7IJ01", "gene_name": "Ppp2cb", "activity": [ { "ec_number": "3.1.3.16", "activity": "O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate.", "evidence": [ { "id": "A0A3L7IJ01", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7IJ01" } ] }, { "ec_number": "3.1.3.16", "activity": "", "evidence": [ { "id": "A0A3L7IJ01", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7IJ01" } ] } ] }, { "uniprot_ac": "A0A8C2LGL9", "gene_name": "Ppp1cb", "activity": [ { "ec_number": "3.1.3.16", "activity": "O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate.", "evidence": [ { "id": "A0A8C2LGL9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LGL9" } ] }, { "ec_number": "3.1.3.16", "activity": "", "evidence": [ { "id": "A0A8C2LGL9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LGL9" } ] } ] }, { "uniprot_ac": "A0A8C2LGY1", "gene_name": "Ppp1ca", "activity": [ { "ec_number": "3.1.3.16", "activity": "O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate.", "evidence": [ { "id": "A0A8C2LGY1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LGY1" } ] }, { "ec_number": "3.1.3.16", "activity": "", "evidence": [ { "id": "A0A8C2LGY1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LGY1" } ] } ] }, { "uniprot_ac": "A0A8C2LI03", "gene_name": "Ctdsp2", "activity": [ { "ec_number": "3.1.3.16", "activity": "O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate.", "evidence": [ { "id": "A0A8C2LI03", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LI03" } ] }, { "ec_number": "3.1.3.16", "activity": "", "evidence": [ { "id": "A0A8C2LI03", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LI03" } ] } ] }, { "uniprot_ac": "A0A8C2LTP5", "gene_name": "LOC100752571", "activity": [ { "ec_number": "3.1.3.16", "activity": "O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate.", "evidence": [ { "id": "A0A8C2LTP5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LTP5" } ] }, { "ec_number": "3.1.3.16", "activity": "", "evidence": [ { "id": "A0A8C2LTP5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LTP5" } ] } ] }, { "uniprot_ac": "A0A8C2LVB9", "gene_name": "Dusp22", "activity": [ { "ec_number": "3.1.3.16", "activity": "O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate.", "evidence": [ { "id": "A0A8C2LVB9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LVB9" } ] }, { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "A0A8C2LVB9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LVB9" } ] }, { "ec_number": "3.1.3.16", "activity": "", "evidence": [ { "id": "A0A8C2LVB9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LVB9" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "A0A8C2LVB9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LVB9" } ] } ] }, { "uniprot_ac": "A0A8C2LYQ8", "gene_name": "Ppm1l", "activity": [ { "ec_number": "3.1.3.16", "activity": "O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate.", "evidence": [ { "id": "A0A8C2LYQ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LYQ8" } ] }, { "ec_number": "3.1.3.16", "activity": "", "evidence": [ { "id": "A0A8C2LYQ8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LYQ8" } ] } ] }, { "uniprot_ac": "A0A8C2M5N0", "gene_name": "Ppp1cc", "activity": [ { "ec_number": "3.1.3.16", "activity": "O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate.", "evidence": [ { "id": "A0A8C2M5N0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5N0" } ] }, { "ec_number": "3.1.3.16", "activity": "", "evidence": [ { "id": "A0A8C2M5N0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M5N0" } ] } ] }, { "uniprot_ac": "A0A8C2MA30", "gene_name": "Phlpp2", "activity": [ { "ec_number": "3.1.3.16", "activity": "O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate.", "evidence": [ { "id": "A0A8C2MA30", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MA30" } ] }, { "ec_number": "3.1.3.16", "activity": "", "evidence": [ { "id": "A0A8C2MA30", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MA30" } ] } ] }, { "uniprot_ac": "A0A8C2ME51", "gene_name": "Ppm1g", "activity": [ { "ec_number": "3.1.3.16", "activity": "O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate.", "evidence": [ { "id": "A0A8C2ME51", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2ME51" } ] }, { "ec_number": "3.1.3.16", "activity": "", "evidence": [ { "id": "A0A8C2ME51", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2ME51" } ] } ] }, { "uniprot_ac": "A0A8C2MF90", "gene_name": "Ssh2", "activity": [ { "ec_number": "3.1.3.16", "activity": "O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate.", "evidence": [ { "id": "A0A8C2MF90", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MF90" } ] }, { "ec_number": "3.1.3.16", "activity": "", "evidence": [ { "id": "A0A8C2MF90", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MF90" } ] } ] }, { "uniprot_ac": "A0A8C2MTQ0", "gene_name": "Ssh1", "activity": [ { "ec_number": "3.1.3.16", "activity": "O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate.", "evidence": [ { "id": "A0A8C2MTQ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MTQ0" } ] }, { "ec_number": "3.1.3.16", "activity": "", "evidence": [ { "id": "A0A8C2MTQ0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MTQ0" } ] } ] }, { "uniprot_ac": "A0A8C2MW37", "gene_name": "Ppp3cc", "activity": [ { "ec_number": "3.1.3.16", "activity": "O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate.", "evidence": [ { "id": "A0A8C2MW37", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MW37" } ] }, { "ec_number": "3.1.3.16", "activity": "", "evidence": [ { "id": "A0A8C2MW37", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MW37" } ] } ] }, { "uniprot_ac": "A0A8C2N2E5", "gene_name": "Dusp15", "activity": [ { "ec_number": "3.1.3.16", "activity": "O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate.", "evidence": [ { "id": "A0A8C2N2E5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N2E5" } ] }, { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "A0A8C2N2E5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N2E5" } ] }, { "ec_number": "3.1.3.16", "activity": "", "evidence": [ { "id": "A0A8C2N2E5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N2E5" } ] }, { "ec_number": "3.1.3.48", "activity": "", "evidence": [ { "id": "A0A8C2N2E5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2N2E5" } ] } ] }, { "uniprot_ac": "A0A8C2QBZ1", "gene_name": "Ctdspl", "activity": [ { "ec_number": "3.1.3.16", "activity": "O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate.", "evidence": [ { "id": "A0A8C2QBZ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QBZ1" } ] }, { "ec_number": "3.1.3.16", "activity": "", "evidence": [ { "id": "A0A8C2QBZ1", "database": "UniProtKB", "url": 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] } ] }, { "uniprot_ac": "A0A9J7FKB3", "gene_name": "Pten", "activity": [ { "ec_number": "3.1.3.67", "activity": "a 1,2-diacyl-sn-glycero-3-phospho-(1D-myo-inositol-3,4,5-trisphosphate) + H2O = a 1,2-diacyl-sn-glycero-3-phospho-(1D-myo-inositol-4,5-bisphosphate) + phosphate.", "evidence": [ { "id": "A0A9J7FKB3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKB3" } ] }, { "ec_number": "3.1.3.16", "activity": "O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate.", "evidence": [ { "id": "A0A9J7FKB3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKB3" } ] }, { "ec_number": "3.1.3.48", "activity": "O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + phosphate.", "evidence": [ { "id": "A0A9J7FKB3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FKB3" } ] }, { "ec_number": "3.1.3.16", "activity": "", "evidence": [ { "id": "A0A9J7FKB3", "database": "UniProtKB", "url": 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"activity": "", "evidence": [ { "id": "A0A9J7FWJ6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWJ6" } ] } ] }, { "uniprot_ac": "A0A9J7FXD0", "gene_name": "Ppm1f", "activity": [ { "ec_number": "3.1.3.16", "activity": "O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate.", "evidence": [ { "id": "A0A9J7FXD0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXD0" } ] }, { "ec_number": "3.1.3.16", "activity": "", "evidence": [ { "id": "A0A9J7FXD0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXD0" } ] } ] }, { "uniprot_ac": "A0A9J7G0U7", "gene_name": "Pptc7", "activity": [ { "ec_number": "3.1.3.16", "activity": "O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate.", "evidence": [ { "id": "A0A9J7G0U7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0U7" } ] }, { "ec_number": "3.1.3.16", "activity": "", "evidence": [ { "id": "A0A9J7G0U7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G0U7" } ] } ] }, { "uniprot_ac": "A0A9J7G1B8", "gene_name": "Phlpp1", "activity": [ { "ec_number": "3.1.3.16", "activity": "O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate.", "evidence": [ { "id": "A0A9J7G1B8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1B8" } ] }, { "ec_number": "3.1.3.16", "activity": "", "evidence": [ { "id": "A0A9J7G1B8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G1B8" } ] } ] }, { "uniprot_ac": "A0A9J7G243", "gene_name": "Ppm1a", "activity": [ { "ec_number": "3.1.3.16", "activity": "O-phospho-L-threonyl-[protein] + H2O = L-threonyl-[protein] + phosphate.", "evidence": [ { "id": "A0A9J7G243", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7G243" } ] }, { "ec_number": "3.1.3.16", "activity": "", "evidence": [ { "id": "A0A9J7G243", "database": "UniProtKB", "url": 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"ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Tyrosine-protein phosphatase", "eco_id": "ECO_0000259", "start_pos": 215, "end_pos": 374, "start_aa": "Asp", "end_aa": "Phe", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 290 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 256, "end_pos": 258 }, { "start_pos": 464, "end_pos": 466 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7J7J5-1", "uniprot_ac": "A0A9J7J7J5", "uniprot_id": "A0A9J7J7J5_CRIGR", "mass": { "chemical_mass": 168609.0, "monoisotopic_mass": 168609.0 }, "refseq": { "ac": "XP_027248618", "name": "protein FAM135A isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248618" }, "gene_names": [ { "name": "Fam135a", "type": "recommended", "evidence": [ { "id": "A0A9J7J7J5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7J5" } ] }, { "name": "Fam135a", "type": "synonym", "evidence": [ { "id": "XP_027248618", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248618" } ] } ], "protein_names": [ { "name": "Protein FAM135A isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7J7J5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7J5/entry#names_and_taxonomy" } ] }, { "name": "protein FAM135A isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027248618", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248618" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027248618", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248618" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J7J5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7J5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Fam135a", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7J5", "locus": {} } ], "crossref": [ { "id": "100753684", "url": "https://www.ncbi.nlm.nih.gov/gene/100753684", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR007751", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007751", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022122", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022122", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029058", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029058", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044294", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044294", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "PTHR12482", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12482", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12482:SF40", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12482:SF40", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05057", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05057", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12394", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12394", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027248618", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248618", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QHW7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QHW7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QHW7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QHW7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HCC3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCC3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HCC3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCC3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J7J5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7J5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J7J5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7J5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKIPPRIPHRVEASLLNATGMTLAFPASVHDALVCSKTFQILYKNEEVVLNDVMIFKVKMLLDERKIEETLEEINFLLSLDLHFTDGDCSADDLNALQLISSRTLKLHYSLYRGLHHHVNVMFDYFHLSVVSVTVHASLVALHQPLISFPRPVKNTWLNRNAPAQSKDSAIPTLESVVFGMNYTKQLSPDGCSFLIAEPFLRHAYHFHYTLCATLLLAFKGLHSYFITVTEEIPSCQKLELAKASMQVLYERLLRRAQPRAQNDTHVEEMDVEARLTELCEEVKKVENPDELAELINMNLAQLCSLLMALWGQFLEVITLHEELRVLLAQEHHTLRVRRFSEAFFCFEHPREAAIAYQELHAQSHLQMCTAIKNTSFCSSLPPLPIECSELDGDLNSLPIIFEDRYLDSVIEDLDAHWMGIQSLQISEASRMDKHETEESSVAGLSSPELKVRPAVASSICYTEGEKQLTKPLKGKNEEANKSKVKVTKLMKTMKPENTKKLIKQNSKDSVVLVSYKCLKSTASSDVTKCSEGHPSHSQEEGLDPTICGYNFDTKAYIRQTSQKEASSLPPNTDRTEHQSPDTENMQPDQFNLLNSAGSLNLCANLSISGELGISQDDITISHTEHNLAARSSSDEFHDCQTTPSSGVRTPEVKSSSKEPFSGEKVTAKIGAWTELQEDQLFVDNLLPSFESSESSGKSKSIEITFGKDALQEAKCHSPEESLTKLSSNLPSTKEYHVVVSGDSIKLPDTNATYASSRFSDSGVESEPSSFATHPNPEMPFEILQGPGPYNNERLFPQLLMKPEHNVKFSLGSHCTESTSALSEIQSSLTSINSLPSDDELSPDDNCKKSAVPECHLSDKKTVLNIGTIDLPKCDDNKKSSIILQQQCVVFSGHLDNESLAMQSLNPSSKDPLQLAFSGEDTSNDVKSSCGSNPNLDTVLKDSPLHDVSDNSAEIAATLNSKLICLGTPCVVSGSISTNTELSEDRTVERKNSEPLNHKEMYSETPVSEDDTYLSTSDSVSSSTDVVKQGLVENYFGSQSNADTSDTCAISYHSLVSSQKGTCEKGIRDLQQERGKEEEEEGQEEEEEEQDQQMIQNGYYEETDFSAADRTVSVQYASGDMREDRHTQSEKVNSEYLRAAVTVPAVCTSGCLSFPSAPRESPCGGKYSRSQFDAITKQPSSISYNFTSSTSWYENSPKPQIHAFLQAKEELKQLKLPGFMYSDVPLLAPSAPYFSMEEDDSSEDGVHLIVCVHGLDGNSADLRLVKTYIELGLPGGRVDFLMSERNQNDTFADFDCMTDRLLDEIIQYIQIYSLTVSKISFIGHSLGNLIIRSVLTRPRFKYYLSKLHTFLSLSGPHLGTLYNSSALVNTGLWFMQKWKKSGSLLQLTCRDHSDPRQTFLYKLSNKAGLHYFKNVVLVGSLQDRYVPYHSARIEMCKTALKDKQSGQIYSEMIHNLLRPVLQSKGCNLVRYNVINALPNTADSLIGRAAHIAVLDSEIFLEKFFLVAALKYFQ", "length": 1513, "header": "tr|A0A9J7J7J5-1|A0A9J7J7J5_CRIGR Isoform 1 of Protein FAM135A isoform X2 OS=Cricetulus griseus OX=10029 GN=Fam135a PE=3 SV=1 CANONICAL=A0A9J7J7J5-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QHW7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7J5/entry#A0A8C2QHW7-1", "sequence": { "sequence": "MTEVQAMVEFSVELNKFYNVDLFQRGFYQIRASMKIPPRIPHRVEASLLNATGMTLAFPASVHDALVCSKTFQILYKNEEVVLNDVMIFKVKMLLDERKIEETLEEINFLLSLDLHFTDGDCSADDLNALQLISSRTLKLHYSLYRGLHHHVNVMFDYFHLSVVSVTVHASLVALHQPLISFPRPVKNTWLNRNAPAQSKDSAIPTLESVVFGMNYTKQLSPDGCSFLIAEPFLRHAYHFHYTLCATLLLAFKGLHSYFITVTEEIPSCQKLELAKASMQVLYERLLRRAQPRAQNDTHVEEMDVEARLTELCEEVKKVENPDELAELINMNLAQLCSLLMALWGQFLEVITLHEELRVLLAQEHHTLRVRRFSEAFFCFEHPREAAIAYQELHAQSHLQMCTAIKNTSFCSSLPPLPIECSELDGDLNSLPIIFEDRYLDSVIEGELGISQDDITISHTEHNLAARSSSDEFHDCQTTPSSGVRTPEVKSSSKEPFSGEKVTAKIGAWTELQEDQLFVDNLLPSFESSESSGKSKSIEITFGKDALQEAKCHSPEESLTKLSSNLPSTKEYHVVVSGDSIKLPDTNATYASSRFSDSGVESEPSSFATHPNPEMPFEILQGPGPYNNERLFPQLLMKPEHNVKFSLGSHCTESTSALSEIQSSLTSINSLPSDDELSPDDNCKKSAVPECHLSDKKTVLNIGTIDLPKCDDNKKSSIILQQQCVVFSGHLDNESLAMQSLNPSSKDPLQLAFSGEDTSNDVKSSCGSNPNLDTVLKDSPLHDVSDNSAEIAATLNSKLICLGTPCVVSGSISTNTELSEDRTVERKNSEPLNHKEMYSETPVSEDDTYLSTSDSVSSSTDVVKQGLVENYFGSQSNADTSDTCAISYHSLVSSQKGTCEKGIRDLQQERGKEEEEEGQEEEEEEQDQQMIQNGYYEETDFSAADRTVSVQYASGDMREDRHTQSEKVNSEYLRAAVTVPAVCTSGCLSFPSAPRESPCGGKYSRSQFDAITKQPSSISYNFTSSTSWYENSPKPQIHAFLQAKEELKQLKLPGFMYSDVPLLAPSAPYFSMEEDDSSEDGVHLIVCVHGLDGNSADLRLVKTYIELGLPGGRVDFLMSERNQNDTFADFDCMTDRLLDEIIQYIQIYSLTVSKISFIGHSLGNLIIRSVLTRPRFKYYLSKLHTFLSLSGPHLGTLYNSSALVNTGLWFMQKWKKSGSLLQLTCRDHSDPRQTFLYKLSNKAGLHYFKNVVLVGSLQDRYVPYHSARIEMCKTALKDKQSGQIYSEMIHNLLRPVLQSKGCNLVRYNVINALPNTADSLIGRAAHIAVLDSEIFLEKFFLVAALKYFQ", "length": 1349, "header": "tr|A0A8C2QHW7-1|A0A9J7J7J5_CRIGR Computationally mapped isoform of Protein FAM135A isoform X2 OS=Cricetulus griseus OX=10029 GN=Fam135a PE=3 SV=1 CANONICAL=A0A9J7J7J5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HCC3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7J5/entry#A0A9J7HCC3-1", "sequence": { "sequence": "MGIQSLQISEASRMDKHETEESSVAGLSSPELKVRPAVASSICYTEGEKQLTKPLKGKNEEANKSKVKVTKLMKTMKPENTKKLIKQNSKDSVVLVSYKCLKSTASSDVTKCSEGHPSHSQEEGLDPTICGYNFDTKAYIRQTSQKEASSLPPNTDRTEHQSPDTENMQPDQFNLLNSAGSLNLCANLSISGELGISQDDITISHTEHNLAARSSSDEFHDCQTTPSSGVRTPEVKSSSKEPFSGEKVTAKIGAWTELQEDQLFVDNLLPSFESSESSGKSKSIEITFGKDALQEAKCHSPEESLTKLSSNLPSTKEYHVVVSGDSIKLPDTNATYASSRFSDSGVESEPSSFATHPNPEMPFEILQGPGPYNNERLFPQLLMKPEHNVKFSLGSHCTESTSALSEIQSSLTSINSLPSDDELSPDDNCKKSAVPECHLSDKKTVLNIGTIDLPKCDDNKKSSIILQQQCVVFSGHLDNESLAMQSLNPSSKDPLQLAFSGEDTSNDVKSSCGSNPNLDTVLKDSPLHDVSDNSAEIAATLNSKLICLGTPCVVSGSISTNTELSEDRTVERKNSEPLNHKEMYSETPVSEDDTYLSTSDSVSSSTDVVKQGLVENYFGSQSNADTSDTCAISYHSLVSSQKGTCEKGIRDLQQERGKEEEEEGQEEEEEEQDQQMIQNGYYEETDFSAADRTVSVQYASGDMREDRHTQSEKVNSEYLRAAVTVPAVCTSGCLSFPSAPRESPCGGKYSRSQFDAITKQPSSISYNFTSSTSWYENSPKPQIHAFLQAKEELKQLKLPGFMYSDVPLLAPSAPYFSMEEDDSSEDGVHLIVCVHGLDGNSADLRLVKTYIELGLPGGRVDFLMSERNQNDTFADFDCMTDRLLDEIIQYIQIYSLTVSKISFIGHSLGNLIIRSVLTRPRFKYYLSKLHTFLSLSGPHLGTLYNSSALVNTGLWFMQKWKKSGSLLQLTCRDHSDPRQTFLYKLSNKAGLHYFKNVVLVGSLQDRYVPYHSARIEMCKTALKDKQSGQIYSEMIHNLLRPVLQSKGCNLVRYNVINALPNTADSLIGRAAHIAVLDSEIFLEKFFLVAALKYFQ", "length": 1095, "header": "tr|A0A9J7HCC3-1|A0A9J7J7J5_CRIGR Computationally mapped isoform of Protein FAM135A isoform X2 OS=Cricetulus griseus OX=10029 GN=Fam135a PE=3 SV=1 CANONICAL=A0A9J7J7J5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J7J5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7J5/entry#A0A9J7J7J5-1", "sequence": { "sequence": "MKIPPRIPHRVEASLLNATGMTLAFPASVHDALVCSKTFQILYKNEEVVLNDVMIFKVKMLLDERKIEETLEEINFLLSLDLHFTDGDCSADDLNALQLISSRTLKLHYSLYRGLHHHVNVMFDYFHLSVVSVTVHASLVALHQPLISFPRPVKNTWLNRNAPAQSKDSAIPTLESVVFGMNYTKQLSPDGCSFLIAEPFLRHAYHFHYTLCATLLLAFKGLHSYFITVTEEIPSCQKLELAKASMQVLYERLLRRAQPRAQNDTHVEEMDVEARLTELCEEVKKVENPDELAELINMNLAQLCSLLMALWGQFLEVITLHEELRVLLAQEHHTLRVRRFSEAFFCFEHPREAAIAYQELHAQSHLQMCTAIKNTSFCSSLPPLPIECSELDGDLNSLPIIFEDRYLDSVIEDLDAHWMGIQSLQISEASRMDKHETEESSVAGLSSPELKVRPAVASSICYTEGEKQLTKPLKGKNEEANKSKVKVTKLMKTMKPENTKKLIKQNSKDSVVLVSYKCLKSTASSDVTKCSEGHPSHSQEEGLDPTICGYNFDTKAYIRQTSQKEASSLPPNTDRTEHQSPDTENMQPDQFNLLNSAGSLNLCANLSISGELGISQDDITISHTEHNLAARSSSDEFHDCQTTPSSGVRTPEVKSSSKEPFSGEKVTAKIGAWTELQEDQLFVDNLLPSFESSESSGKSKSIEITFGKDALQEAKCHSPEESLTKLSSNLPSTKEYHVVVSGDSIKLPDTNATYASSRFSDSGVESEPSSFATHPNPEMPFEILQGPGPYNNERLFPQLLMKPEHNVKFSLGSHCTESTSALSEIQSSLTSINSLPSDDELSPDDNCKKSAVPECHLSDKKTVLNIGTIDLPKCDDNKKSSIILQQQCVVFSGHLDNESLAMQSLNPSSKDPLQLAFSGEDTSNDVKSSCGSNPNLDTVLKDSPLHDVSDNSAEIAATLNSKLICLGTPCVVSGSISTNTELSEDRTVERKNSEPLNHKEMYSETPVSEDDTYLSTSDSVSSSTDVVKQGLVENYFGSQSNADTSDTCAISYHSLVSSQKGTCEKGIRDLQQERGKEEEEEGQEEEEEEQDQQMIQNGYYEETDFSAADRTVSVQYASGDMREDRHTQSEKVNSEYLRAAVTVPAVCTSGCLSFPSAPRESPCGGKYSRSQFDAITKQPSSISYNFTSSTSWYENSPKPQIHAFLQAKEELKQLKLPGFMYSDVPLLAPSAPYFSMEEDDSSEDGVHLIVCVHGLDGNSADLRLVKTYIELGLPGGRVDFLMSERNQNDTFADFDCMTDRLLDEIIQYIQIYSLTVSKISFIGHSLGNLIIRSVLTRPRFKYYLSKLHTFLSLSGPHLGTLYNSSALVNTGLWFMQKWKKSGSLLQLTCRDHSDPRQTFLYKLSNKAGLHYFKNVVLVGSLQDRYVPYHSARIEMCKTALKDKQSGQIYSEMIHNLLRPVLQSKGCNLVRYNVINALPNTADSLIGRAAHIAVLDSEIFLEKFFLVAALKYFQ", "length": 1513, "header": "tr|A0A9J7J7J5-1|A0A9J7J7J5_CRIGR Isoform 1 of Protein FAM135A isoform X2 OS=Cricetulus griseus OX=10029 GN=Fam135a PE=3 SV=1 CANONICAL=A0A9J7J7J5-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1142, "start_aa": "Thr", "end_pos": 1142, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1142", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QHW7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QHW7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NW_003613983.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_016831720", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016831720" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J5K1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J5K1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "CUNH12orf50", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J5K1", "locus": {} } ], "crossref": [ { "id": "A0A9J7J5K1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7J5K1", "database": "AlphaFoldDB", "categories": [] }, { "id": "100753335", "url": "https://www.ncbi.nlm.nih.gov/gene/100753335", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": 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"database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEMQQNCSISCFWETQPLGCVKISCIFYHSKPRNINGLFLPPSSNTTLQKESQEGNPPPSQSQEPLKPMENVSRPIHNPLVLKTNFEEEEEEEEEQNDASSLWTKTPEEIEEKRAIKEMCYKSGEYYRFHAPPDVSSSKSVAPTVEKELEKPLENGSELQEGDGLTVPTKFSLFERPGEAKTSLDRKPRTDIAAFENGGGDCYAPQRIIFLGVNESEALAEVKDITSKCSNVKESKDSLHPKRPLATRLVPATHVLNATENIGVKCRENPSSMNDVQPVRKPHFKGVKKRKWIYDEPKNFPGSGMRRAGHTPNPKHKMSYHHHNKNRNAENASYMHVQRDSVRTVTLNTPPRSRPTSGPYNKDDVNKEPKLNLCPDKHMPTSYNGSAWRRRIPFSKTYSKTEKIYPEPRRNGSK", "length": 414, "header": "tr|A0A9J7J5K1-1|A0A9J7J5K1_CRIGR Isoform 1 of Uncharacterized protein C12orf50 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=CUNH12orf50 PE=4 SV=1 CANONICAL=A0A9J7J5K1-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QI17-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J5K1/entry#A0A8C2QI17-1", "sequence": { "sequence": 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Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QI17", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QI17" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QI17", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QI17" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100753335", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753335", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0YAN0-1", "protein_name": "Chromosome 12 open reading frame 50", "gene_name": "C12orf50", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": 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"MEMQQNCSISCFWETQPLGCVKISCIFYHSKPRNINGLFLPPSSNTTLQKESQEGSPSPTQSQESLKPMENVSRPIHHPLVLKTNFEEEEEEEEEPNDASSLWTKTPEEIEEKRAIKEMCYKSGEYYRFHAPPDIPSSKSVAPTVEKELEKPLETGSELQEGDGLTVPTKFSLFERAGEAKTSLDRKPRTDIAAFENGGGDCYAPQRIIFLGVDESEALAEDKEATSKCSNVKEESKNGLHPKHPLTTRLMPTTHVLNATENISMKCRETPSSMNDVQPVRKPHFKGVKKRKWIYDEPKNFPGSGMRRAVHIPNPKHKMSYHHHNKNRNAENASYTHAPRDAVRTVTLNAPPRSRPTSRSYNKADVNKEPKLNLCPDKHMSTSYNGSAWRRRIPFSKTYSKTEKVYPEPRRNGSK", "length": 415 }, "evidence": [ { "id": "A0A9J7J5K1", "url": "https://omabrowser.org/oma/group/A0A9J7J5K1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "F1SPZ2-1", "protein_name": "Chromosome 5 C12orf50 homolog", "gene_name": "C5H12orf50", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MVFFPNQWIAGSQCRFRHCEEALGSDTVCSLWREGKCLDPLCRFRHMEMQQNCSISCFWETQPLGCVKISCIFYHSKPRNINGLFLPPSSNITLQKETQEGISPPAQSQEPLKPQENISRPIHHPLVLKTNFEEEEEEGDEQNDASSLWTKTPEEIEEKRAIKEMCYKSGEYYRFHTPPDISSSKSIASTVEKELEKPLENGSELQEGDGLTVPTKFSLSERQGEMKASLDGKPRTDIAAFENGGGDCHVPQRIIFLGVDEKEVLTEGKEVTMSKCSNAKDNQDSPHPKSSLTTRLVPTTHVLNATENISMKCREDPSSMNDVQPVRKPHFKGVKKRKWIYDEPKSFPGPGMRRAVQAPNPKNKMSYHRNHRNRNSENAAYIHVQKDAVKTVSWNAPPRGRPTNGSYNRADINKEPKFNLCSDKYTSTSYNGSAWRKRIPFSKTYSKTEKIYTEPRRNGSK", "length": 461 }, "evidence": [ { "id": "A0A9J7J5K1", "url": "https://omabrowser.org/oma/group/A0A9J7J5K1/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q6AYU0-1", "protein_name": "Uncharacterized protein C12orf50 homolog", "gene_name": "", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEMQQNCSISCFWETQPLGCVKISCIFYHSKPRNINGLFLPPSSNTTLQKESQEGSPPPTQSQEPLKPMENVSRPIHHPLVLKTNFEEEEEEEEKPNDASSLWTKTPEEIEEKRAIKEMCYKSGEYYRFHAPPDIPSSKSIAPTVEKELEKPLENGSELQEGDGLTVPTKFSLFERAGEAKTSLDRKPRTDIAAFENGGGDCYAPQRIIFLGVDESEALAEDKETTSKGSNAKEESKNGLHPKHPLTARLVPTTHVLNATENISMKCRENPSSMNDVQPVRKPHFKGVKKRKWIYDEPKNFPGSGMRRAVHIPNPKHKMSYHHHNKNRNAENASYTHAQRDAVRTVTLNAPPRSRPTSGSYNKADVNKDPKLNLCPDKHMSTSYNGSAWRRRIPFSKTYSKTEKIYPEPRRNGSK", "length": 415 }, "evidence": [ { "id": "A0A9J7J5K1", "url": "https://omabrowser.org/oma/group/A0A9J7J5K1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q8NA57-1", "protein_name": "Uncharacterized protein C12orf50", "gene_name": "C12orf50", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEMQQNCSISCFWETQPLGCVKISCIFYHSKPRNINGLFLPPSSNITLQKEIQEGIPLQSQSQEPLKPQENISRPIHHPLVLKTNFEEEEEVDEQNDASSLWTKTPEEIEEKRAIKEMCYKSGEYYRFHTPPDILSSKSMTPTAEKQLEKPLENGSELQEGDSLTVPTKLSQYERQGEIKTSLHGKPKTDIAAFENGGGDCYVPQRVIFLGVDESEALTEEKEITISKCSNTKDNKDSPHPKHSLTTRLVPTTHVLNATENISMKCREDPSSMNDVQPVKKPHFKGVKKRKWIYDEPQNFPNSGMQRAVQAPRPQNKMSYHRNNKNRNAENASYIHVQRDAVRTVALNAPSRSRPTHGSYNKVHANREPKPNLSPDKYTSTSYNDSAWRKRIPFSKTYSKSEKIYPEPRRNGSK", "length": 414 }, "evidence": [ { "id": "A0A9J7J5K1", "url": "https://omabrowser.org/oma/group/A0A9J7J5K1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "poly(A)+ mRNA export from nucleus", "id": "GO:0016973", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016973", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J5K1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J5K1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 155, "end_pos": 157, "annotation": "n_glycosylation_sequon" }, { "start_pos": 214, "end_pos": 216, "annotation": "n_glycosylation_sequon" }, { "start_pos": 257, "end_pos": 259, "annotation": "n_glycosylation_sequon" }, { "start_pos": 331, "end_pos": 333, "annotation": "n_glycosylation_sequon" }, { "start_pos": 384, "end_pos": 386, "annotation": "n_glycosylation_sequon" }, { "start_pos": 411, "end_pos": 413, "annotation": "n_glycosylation_sequon" }, { "start_pos": 45, "end_pos": 47, "annotation": "n_glycosylation_sequon" }, { "start_pos": 6, "end_pos": 8, "annotation": "n_glycosylation_sequon" }, { "start_pos": 71, "end_pos": 73, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7J5K1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J5K1" }, { "id": "PF15663", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15663" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Zinc-finger CCCH", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 52, "start_aa": "Met", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 155, "end_pos": 157 }, { "start_pos": 214, "end_pos": 216 }, { "start_pos": 257, "end_pos": 259 }, { "start_pos": 331, "end_pos": 333 }, { "start_pos": 384, "end_pos": 386 }, { "start_pos": 411, "end_pos": 413 }, { "start_pos": 45, "end_pos": 47 }, { "start_pos": 6, "end_pos": 8 }, { "start_pos": 71, "end_pos": 73 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": 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"publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7JBW0-1", "uniprot_ac": "A0A9J7JBW0", "uniprot_id": "A0A9J7JBW0_CRIGR", "mass": { "chemical_mass": 45100.0, "monoisotopic_mass": 45100.0 }, "refseq": { "ac": "XP_027251969", "name": "protein FAM118A isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027251969" }, "gene_names": [ { "name": "Fam118a", "type": "recommended", "evidence": [ { "id": "A0A9J7JBW0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBW0" } ] }, { "name": "Fam118a", "type": "synonym", "evidence": [ { "id": "XP_027251969", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027251969" } ] } ], "protein_names": [ { "name": "Protein FAM118A isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7JBW0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBW0/entry#names_and_taxonomy" } ] }, { "name": "protein FAM118A isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027251969", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027251969" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027251969", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027251969" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JBW0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBW0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Fam118a", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBW0", "locus": {} } ], "crossref": [ { "id": "A0A9J7JBW0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JBW0", "database": "AlphaFoldDB", "categories": [] }, { "id": "100764016", "url": "https://www.ncbi.nlm.nih.gov/gene/100764016", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR038916", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038916", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100764016", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764016", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YRDVTQD", "url": "https://omabrowser.org/oma/group/YRDVTQD/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JBW0", "url": "https://www.orthodb.org/?gene=A0A9J7JBW0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR28623", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28623", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR28623:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28623:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13289", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13289", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027251969", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027251969", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QM44", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QM44", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QM44-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QM44-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JBV4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBV4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JBV4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBV4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JBW0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBW0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JBW0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBW0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MILVRVLAAETSPDHPTQAETEQSQQEPATACLSRAEFSLDSQMESVEKTTNRSEQKSRKFLKSLIRKQPQDLLLVIGTGVSAAVAPGIRALCSWRSCIEAVIEAAEQLEVLHPGDVAEFRRKVMKDRDLLVVAHDLIRKMSPRTGDTKPNFFQDCLMEVFDSLEQHIQNPVVLQSILSLMDRGTMVLTTNYDNLLEIFGQQQSKPMESLDLKDKTKVLQWARGHIKYGVLHIHGLYTDPCGMVLDPSGYKDVTQDPEVMEVLQNLYRTKSFLFVGCGETLRDQIFQALFLYSVPNKVDLEHYMVVLKENEDHFFKHQADMLLHGIKVVSYGDCFDLFPGYVQDLATQICKQRSPDAERVDSTTLLGNACQDCAKRKLEENGIEVTKKVRQSDTDDAGGS", "length": 400, "header": "tr|A0A9J7JBW0-1|A0A9J7JBW0_CRIGR Isoform 1 of Protein FAM118A isoform X1 OS=Cricetulus griseus OX=10029 GN=Fam118a PE=3 SV=1 CANONICAL=A0A9J7JBW0-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QM44-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBW0/entry#A0A8C2QM44-1", "sequence": { "sequence": "MESVEKTTNRSEQKSRKFLKSLIRKQPQDLLLVIGTGVSAAVAPGIRALCSWRSCIEAVIEAAEQLEVLHPGDVAEFRRKVMKDRDLLVVAHDLIRKMSPRTGDTKPNFFQDCLMEVFDSLEQHIQNPVVLQSILSLMDRGTMVLTTNYDNLLEIFGQQQSKPMESLDLKDKTKVLQWARGHIKYGVLHIHGLYTDPCGMVLDPSGYKDVTQDPEVMEVLQNLYRTKSFLFVGCGETLRDQIFQALFLYSVPNKVDLEHYMVVLKENEDHFFKHQADMLLHGIKVVSYGDCFDLFPGYVQDLATQICKQRSPDAERVDSTTLLGNACQDCAKRKLEENGIEVTKKVRQSDTDDAGGS", "length": 357, "header": "tr|A0A8C2QM44-1|A0A9J7JBW0_CRIGR Computationally mapped isoform of Protein FAM118A isoform X1 OS=Cricetulus griseus OX=10029 GN=Fam118a PE=3 SV=1 CANONICAL=A0A9J7JBW0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JBV4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBW0/entry#A0A9J7JBV4-1", "sequence": { "sequence": "MILVRVLAAETSPDHPTQAETEQSQQEPATACLSRAEFSLDSQMESVEKTTNRSEQKSRKFLKSLIRKQPQDLLLVIGTGVSAAVAPGIRALCSWRSCIEAVIEAAEQLEVLHPGDVAEFRRKVMKDRDLLVVAHDLIRKMSPRTGDTKPNFFQDCLMEVFDSLEQHIQNPVVLQSILSLMDRGTMVLTTNYDNLLEIFGQQQSKPMESLDLKDKTKVLQWARGHIKYGVLHIHGLYTDPCGMVLDPSGYKDVTQDPEVMEVLQNLYRTKSFLFVGCGETLRDQIFQALFLYSVPNKVDLEHYMVVLKENEDHFFKHQADMLLHGIKVVSYGDCFDLFPGYVQDLATQICKQRSPGNACQDCAKRKLEENGIEVTKKVRQSDTDDAGGS", "length": 389, "header": "tr|A0A9J7JBV4-1|A0A9J7JBV4_CRIGR Computationally mapped isoform of Protein FAM118A isoform X2 OS=Cricetulus griseus OX=10029 GN=Fam118a PE=3 SV=1 CANONICAL=A0A9J7JBW0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JBW0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBW0/entry#A0A9J7JBW0-1", "sequence": { "sequence": "MILVRVLAAETSPDHPTQAETEQSQQEPATACLSRAEFSLDSQMESVEKTTNRSEQKSRKFLKSLIRKQPQDLLLVIGTGVSAAVAPGIRALCSWRSCIEAVIEAAEQLEVLHPGDVAEFRRKVMKDRDLLVVAHDLIRKMSPRTGDTKPNFFQDCLMEVFDSLEQHIQNPVVLQSILSLMDRGTMVLTTNYDNLLEIFGQQQSKPMESLDLKDKTKVLQWARGHIKYGVLHIHGLYTDPCGMVLDPSGYKDVTQDPEVMEVLQNLYRTKSFLFVGCGETLRDQIFQALFLYSVPNKVDLEHYMVVLKENEDHFFKHQADMLLHGIKVVSYGDCFDLFPGYVQDLATQICKQRSPDAERVDSTTLLGNACQDCAKRKLEENGIEVTKKVRQSDTDDAGGS", "length": 400, "header": "tr|A0A9J7JBW0-1|A0A9J7JBW0_CRIGR Isoform 1 of Protein FAM118A isoform X1 OS=Cricetulus griseus OX=10029 GN=Fam118a PE=3 SV=1 CANONICAL=A0A9J7JBW0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QM44", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QM44" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QM44", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QM44" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100764016", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764016", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A0G2K3T5-1", "protein_name": "Family with sequence similarity 118, member A", "gene_name": "Fam118a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MKKACEDSQMESVEKTTNRSEQKCRKFLKSLIRKQPQDLLLVIGTGVSAAVAPGIRALCSWRSCIEAVIEAAEQLEVLHPGDVAEFRRKVMKDRDLLVVAHDLIRKMSPRTGDTKPNFFQDCLMEVFDSLEQHIQNPVVLQSILSLMDRGTMVLTTNYDNLLEIFGQQQSKPMESLDLKDKTKVLQWARGHIKYGVLHIHGLYTDPCGMVLDPSGYKDVTQDAEVMEVLQNLYRTKSFLFVGCGETLRDQIFQALFLYSVPNKVDLEHYMVVLKENEDHFFKHQADMLLHGIKVVSYGDCFELFPGYVQDLATQICKQRSPDAERVDSTTLLGNACQDCAKRKLEENGIEVTKKVRQSDTDDAGGS", "length": 366 }, "evidence": [ { "id": "A0A9J7JBW0", "url": "https://omabrowser.org/oma/group/A0A9J7JBW0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1SM57-1", "protein_name": "Family with sequence similarity 118 member A", "gene_name": "FAM118A", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MDSVEKTAHRSEHKSRKFLKSLIRKQPQELLLVMGTGVSAAVAPGIPALCSWRSCIEAVIEAAEQLEVLHPGDVAEFRRKVTKDRDLLVVAHDLIRKMSPRTGDTKPNFFQDCLMEVFDDLERHIQNPLVLQSILSLMERGAMVLTTNYDNLLEIFGQQQSKPMESLDLKDKTKVLQWARGHIRYGVLHIHGLYTDPCGMVLDPSGYKDVTQDPEVMEVLQNLYRTKSFLFVGCGETLRDQIFQALFLYSVPNRVDLEHYMVVLKESEDHFFKHQADMLLHGIKVVSYGDCFDYFPAYVQDLASQICQQPSPDAERVDSTTSLGNACQDCAKRKLEENGIEVSKKPRQSDTDDAGGS", "length": 357 }, "evidence": [ { "id": "A0A9J7JBW0", "url": "https://omabrowser.org/oma/group/A0A9J7JBW0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q91YN1-1", "protein_name": "Protein FAM118A", "gene_name": "Fam118a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MESVEKTTNRSEQKCRKFLKSLIRKQPQDLLLVIGTGVSAAVAPGIRALCSWRSCIEAVIEAAEQLEVLHPGDVAEFRRKVMKDRDLLVVAHDLIRKMSPRTGDTKPNFFQDCLMEVFDSLEQHIQNPVVLRSILSLMDRGTMVLTTNYDNLLEIFGQQQSKPMESLDLKDKTKVLQWARGHIKYGVLHIHGLYTDPCGMVLDPSGYKDVTQDPEVMEVLQNLYRTKSFLFVGCGETLRDQIFQALFLYSVPNKVDLEHYMVVLKENEDHFFKHQADMLLHGIKVVSYGDCFDLFPGYVQDLATQICKQRSPDAERVDSTTLLGNACQDCAKRKLEENGIEVTKKVRQSDTDDAGGS", "length": 357 }, "evidence": [ { "id": "A0A9J7JBW0", "url": "https://omabrowser.org/oma/group/A0A9J7JBW0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9NWS6-1", "protein_name": "Protein FAM118A", "gene_name": "FAM118A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MDSVEKTTNRSEQKSRKFLKSLIRKQPQELLLVIGTGVSAAVAPGIPALCSWRSCIEAVIEAAEQLEVLHPGDVAEFRRKVTKDRDLLVVAHDLIRKMSPRTGDAKPSFFQDCLMEVFDDLEQHIRSPVVLQSILSLMDRGAMVLTTNYDNLLEAFGRRQNKPMESLDLKDKTKVLEWARGHMKYGVLHIHGLYTDPCGVVLDPSGYKDVTQDAEVMEVLQNLYRTKSFLFVGCGETLRDQIFQALFLYSVPNKVDLEHYMLVLKENEDHFFKHQADMLLHGIKVVSYGDCFDHFPGYVQDLATQICKQQSPDADRVDSTTLLGNACQDCAKRKLEENGIEVSKKRTQSDTDDAGGS", "length": 357 }, "evidence": [ { "id": "A0A9J7JBW0", "url": "https://omabrowser.org/oma/group/A0A9J7JBW0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 52, "end_pos": 54, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 52, "end_pos": 54 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7JBE3-1", "uniprot_ac": "A0A9J7JBE3", "uniprot_id": "A0A9J7JBE3_CRIGR", "mass": { "chemical_mass": 80381.0, "monoisotopic_mass": 80381.0 }, "refseq": { "ac": "XP_016835432", "name": "ataxin-7-like protein 2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016835432" }, "gene_names": [ { "name": "Atxn7l2", "type": "recommended", "evidence": [ { "id": "A0A9J7JBE3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBE3" } ] }, { "name": "Atxn7l2", "type": "synonym", "evidence": [ { "id": "XP_016835432", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016835432" } ] } ], "protein_names": [ { "name": "Ataxin-7-like protein 2 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7JBE3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBE3/entry#names_and_taxonomy" } ] }, { "name": "ataxin-7-like protein 2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_016835432", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016835432" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 145 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614997.1) and transcript sequence (IACG01039010.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_016835432.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_016835432", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016835432" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JBE3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBE3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Atxn7l2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBE3", "locus": {} } ], "crossref": [ { "id": "A0A9J7JBE3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JBE3", "database": "AlphaFoldDB", "categories": [] }, { "id": "100773539", "url": "https://www.ncbi.nlm.nih.gov/gene/100773539", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013243", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013243", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052237", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052237", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100773539", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773539", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GKTPMAP", "url": "https://omabrowser.org/oma/group/GKTPMAP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2QM71", "url": "https://www.orthodb.org/?gene=A0A8C2QM71", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JBE3", "url": "https://www.orthodb.org/?gene=A0A9J7JBE3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15117", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15117", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15117:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15117:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF08313", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08313", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_016835432", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016835432", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QM71", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QM71", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QM71-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QM71-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JBE3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBE3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JBE3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBE3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAVRERAVAAMAALERRVPSLDDFAGQSWSSWVERADLPAADGAELEESNKNVKKLDAMTLIKEDMSIFGHCPAHDDFYLVVCNHCSQVVKPQAFQKHCERRHGPLSKLYARAPPPPPAPASSQKCHVVNGQGPACRAPGSTKTSSREKGQGSRSRGHQPPEKTQKDNLCLFVPVVNLEKMSSLPKPDGHGVRVAPPSAFLSQPGGLPKDSPGKVPTAPSPKEPPGRENMELIPGEGSSHRAESSPPEKEPSGARLPPKTHRKMARKEFDLNRQCGVINPETKKICTRLLTCKIHSVHQRREVPGRTKDFDVLVAELKASSRKGESPKEKSPGRKEPALERPSQEPPSAIQGVAAAAAPNNTSARSKQAYPYCVLPRSQASSESEADDEGPCGGDGDPGLFPFPLPRGGAQASSEESEEEGTPDDLHLPPDCHYTTRPPRPQAFCTFGSRLVSPGCYVFSRRLDRFCSALSSMLERHLSSHMWKKIPPAAEPPSHLVSPSLSDPLSPSSMGSCPRLPGPPPRPACPASIPPMKDSLVPSYPAGSPSVAAACSQAECMGGSQAITSPLPANTPSPSFSKLPPSKASKSSKGKEGVEMEAPSRKRKLSPGPTTFKRTCILEPAGKGKPSGCRGLSAKTKTTLSMGLNGTVGPRVKRAGPLDCRGSPHSSPIPVKASQLENRGMAGHPAKVLPSNCLSEEEVAKKRKNLATYCRPVKAKHCQAGVPPDGTCSVRRKKPGPALPFEEKCSTLKSKAH", "length": 753, "header": "tr|A0A9J7JBE3-1|A0A9J7JBE3_CRIGR Isoform 1 of Ataxin-7-like protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Atxn7l2 PE=4 SV=1 CANONICAL=A0A9J7JBE3-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QM71-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBE3/entry#A0A8C2QM71-1", "sequence": { "sequence": "MTLIKEDMSIFGHCPAHDDFYLVVCNHCSQVVKPQAFQKHCERRHGPLSKLYARAPPPPPAPASSQKCHVVNGQGPACRAPGSTKTSSREKGQGSRSRGHQPPEKTQKDNLCLFVPVVNLEKMSSLPKPDGHGVRVAPPSAFLSQPGGLPKDSPGKVPTAPSPKEPPGRENMELIPGEGSSHRAESSPPEKEPSGARLPPKTHRKMARKEFDLNRQCGVINPETKKICTRLLTCKIHSVHQRREVPGRTKDFDVLVAELKASSRKGESPKEKSPGRKEPALERPSQEPPSAIQGVAAAAAPNNTSARSKQAYPYCVLPRSQASSESEADDEGPCGGDGDPGLFPFPLPRGGAQASSEESEEEGTPDDLHLPPDCHYTTRPPRPQAFCTFGSRLVSPGCYVFSRRLDRFCSALSSMLERHLSSHMWKKIPPAAEPPSHLVSPSLSDPLSPSSMGSCPRLPGPPPRPACPASIPPMKDSLVPSYPAGSPSVAAACSQAECMGGSQAITSPLPANTPSPSFSKLPPSKASKSSKGKEGVEMEAPSRKRKLSPGPTTFKRTCILEPAGKGKPSGCRGLSAKTKTTLSMGLNGTVGPRVKRAGPLDCRGSPHSSPIPVKASQLENRGMAGHPAKVLPSNCLSEEEVAKKRKNLATYCRPVKAKHCQAGVPPDGTCSVRRKKPGPALPFEEKCSTLKSKAH", "length": 695, "header": "tr|A0A8C2QM71-1|A0A9J7JBE3_CRIGR Computationally mapped isoform of Ataxin-7-like protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Atxn7l2 PE=4 SV=1 CANONICAL=A0A9J7JBE3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JBE3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBE3/entry#A0A9J7JBE3-1", "sequence": { "sequence": "MAVRERAVAAMAALERRVPSLDDFAGQSWSSWVERADLPAADGAELEESNKNVKKLDAMTLIKEDMSIFGHCPAHDDFYLVVCNHCSQVVKPQAFQKHCERRHGPLSKLYARAPPPPPAPASSQKCHVVNGQGPACRAPGSTKTSSREKGQGSRSRGHQPPEKTQKDNLCLFVPVVNLEKMSSLPKPDGHGVRVAPPSAFLSQPGGLPKDSPGKVPTAPSPKEPPGRENMELIPGEGSSHRAESSPPEKEPSGARLPPKTHRKMARKEFDLNRQCGVINPETKKICTRLLTCKIHSVHQRREVPGRTKDFDVLVAELKASSRKGESPKEKSPGRKEPALERPSQEPPSAIQGVAAAAAPNNTSARSKQAYPYCVLPRSQASSESEADDEGPCGGDGDPGLFPFPLPRGGAQASSEESEEEGTPDDLHLPPDCHYTTRPPRPQAFCTFGSRLVSPGCYVFSRRLDRFCSALSSMLERHLSSHMWKKIPPAAEPPSHLVSPSLSDPLSPSSMGSCPRLPGPPPRPACPASIPPMKDSLVPSYPAGSPSVAAACSQAECMGGSQAITSPLPANTPSPSFSKLPPSKASKSSKGKEGVEMEAPSRKRKLSPGPTTFKRTCILEPAGKGKPSGCRGLSAKTKTTLSMGLNGTVGPRVKRAGPLDCRGSPHSSPIPVKASQLENRGMAGHPAKVLPSNCLSEEEVAKKRKNLATYCRPVKAKHCQAGVPPDGTCSVRRKKPGPALPFEEKCSTLKSKAH", "length": 753, "header": "tr|A0A9J7JBE3-1|A0A9J7JBE3_CRIGR Isoform 1 of Ataxin-7-like protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Atxn7l2 PE=4 SV=1 CANONICAL=A0A9J7JBE3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QM71", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QM71" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2QM71", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QM71" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100773539", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773539", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V1AA61-1", "protein_name": "Ataxin 7 like 2", "gene_name": "ATXN7L2", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MAARGRAAAMAAAERRLPSVDEFAGQSWSAWVERAGPPAEPAGLELEESSKGSKKLDAMTLIKEDMSIFGHCPAHDEFYLVVCNHCSQVVKPQAFQKHCERRHGPLSKLYSKCHAVNGQPAGKALRDKGARSRAQPLPEKAQKDNNLCLFMPVVNLEKIPSFPKPEGLKAAPKTPPKAPPAPPASSPAEPPGRPSPAPPPPPKEPPGAGGDSVPAPTASPVLKAGEKEPGVCRPPPRAHKKLTRKECDLNRQCGVLNPDTKKVCTRLLTCKIHSVHQRREVQGRAKDFDVLVAELKASSRREAPKEKSPPRKDPPGIEPPAPPALPQPPAAPPGASPCRPRPPHAHCPPPRARLSSDSDPEEGDGGLFPFPLPKEGGSRGSSEDSEEEGAADDAHRPDCHYAARPPRPQAFCTFGSRLVSPGCYVFNRRLDRFCSALGSMLERHLSSHMWRKIPPAADSQLPAAPAPPSPAGPAAPTPPPHARTPPTPTGPRDGRVPAGINYTVGSPHAAAACSQPECGGGGSQSITSPLPANIPSPSFSKLPSTKASKSSRAKEAAGGTEPDSVARKRKQPLGAAASPPYKRTCPGDGPKSKSPACQVSAPPGKTKSPAVAALNGSACAGSRLKRALPPDCRPPLSAAPEPRGSPLRGVGVPPPPPRCISEDEVKKRKNSATYCRPSKPKHAAPPPAPPPAPSPAPPDLGCSVRRKKPGSALGFEEKRSVLKSKAH", "length": 727 }, "evidence": [ { "id": "A0A9J7JBE3", "url": "https://omabrowser.org/oma/group/A0A9J7JBE3/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0ABK0LP53-1", "protein_name": "Ataxin 7-like 2", "gene_name": "Atxn7l2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MAILSVQDLRRAELEESSKNTKKLDAMTLIKEDMSIFGHCPAHDDFYLVVCNHCSQVVKPQAFQKHCERRHGPLSKLYARAPPPPPAPASSQKCHVVNGQGPACRAPGSTKTSSREKGQGSRSRGHQPPEKTQKDSLCLFVPVVNLEKMSSLPKPDGHGIRVAPPSAFLSQPGGLPKDSPGKVPTAPSPKEPPGRENMELIPGEGTSHRAEGSPPEKEPSGARLPPKTHRKMARKEFDLNRQCGVINPETKKICTRLLTCKIHSVHQRREVPGRAKDFDVLVAELKASSRKGESPKEKSPARKEPALERPSQEPPTAVQGAAAVAAPNNTFSSLSKQTYPYCTLPRSRASSESEVDDEGLCGGDGDPGLFPFPLPRGGAQASSEESEEEGTSDDLHLSPDCHYATRPPRPQAFCTFGSRLVSPGCYVFSRRLDRFCSALSSMLERHLSSHMWKKIPPAAEPPSHLVSPSLSDPLSPSSMGSCPRLPGPPPRPACPASVPPIKDSLVPSYPAGSPSVAAACSQAECMGGSQAITSPLPANTPSPSFSKLPPSKASKSSKGKEGVEMEAPSRKRKLSPGPTTFKRTCILEPAGKGKPSSCRGLSTKTKTALNLGLNGTVGPRMKRAGPLDCRGSPHSSPIPVKASQLENRGVAGHPTKVLPTNCLSEEEVAKKRKNLATYCRPVKAKHCQAGVPPDGTCSVRRKKPGPALPFEEKCSTLKVPVQLPEEHGQRGFGRG", "length": 735 }, "evidence": [ { "id": "A0A9J7JBE3", "url": "https://omabrowser.org/oma/group/A0A9J7JBE3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1S5Z9-1", "protein_name": "Ataxin 7 like 2", "gene_name": "ATXN7L2", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MAVRERAAAAMAALERRVPSLDDFAGQSWSSWVERAELPAADGAELEESNKNMKKLDAMTLIKEDMSIFGHCPAHDDFYLVVCNHCSQVVKPQAFQKHCERRHGPLSKLYARAPPPPPAPASSQKCHVVNGQGPAYRASGSTKTSSREKGQGSRSRGHQPPEKTQKDNLCLFVPVVNLEKMSSLPKPDGHGIRVAPPSAFLSQPGSLAKDSPGKNPMAPPSKEPPGREGIEITPSEGLSHRAEGSPPEKEPGGTRLPPKTHRKMARKECDLNRQCGVVNPETKKICTRLLTCKIHSVHQRREVQGRAKDFDVLVAELKASSRKGESPKEKSPGRKEPALERPSQEPPSSVQAVAAAAAPGSTFSARAKQTYPYCALPRSRASSESELDAEGPGGGDGDPGLFPFPLPRGGAQASSEESEEEGTSDDLRLPTDCHYASRPPRPQAFCTFGSRLVSPGCYVFSRRLDRFCSALSSMLERHLSSHMWKKIPPAAEPPSHLVSSPPAAPLSPSSASSCPRLPGPPPRPACPASMPPAKDSLVPSYPAGSPSVAAACSQAECMGGSQAITSPLPANTPSPSFCKLPPSKASKSSKGKDALEVEAPSRKRKLSPGPTTFKRTCILEPTGKGKPPGCRGLSAKTKTALGVGLNGTVGPRVKRAGPLDCRGPPHPPPTPVKASQLDSQGGAGLTAKALPTSCLSEEEVAKKRKNLATYCRPVKAKHCQAGAPADAACSVRRKKPGPALAFEDKCSPLKSKAH", "length": 754 }, "evidence": [ { "id": "A0A9J7JBE3", "url": "https://omabrowser.org/oma/group/A0A9J7JBE3/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q5T6C5-1", "protein_name": "Ataxin-7-like protein 2", "gene_name": "ATXN7L2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MAVRERAAAAMAALERRVPSLDDFAGQSWSSWVERADLPAADGAELEESSKNTKKLDAMTLIKEDMSIFGHCPAHDDFYLVVCNHCSQVVKPQAFQKHCERRHGPLSKLYGRAPPPPPAPASSQKCHVVNGQGPACRAPGSTKTSSREKGQGSRSRGHQPPEKTQKDNLCQPGGLTKDSPGKPPMAPPSKEPPGRENIEIIPSEGSSHWAEGSPPEKEPSGTRLPPKTHRKMARKECDLNRQCGVINPETKKICTRLLTCKIHSVHQRREVQGRAKDFDVLVAELKANSRKGESPKEKSPGRKEQVLERPSQELPSSVQVVAAVAAPSSTFSVRAKQTYPYCALPRSRASSESELDDEGPCGGDGDPGLFPFPMPRGGTQASSEESEEEGTSDDLHPPPDCHYATRPPRPQAFCTFGSRLVSPGCYVFSRRLDRFCSALSSMLERHLSTHMWKKIPPAAEPPAHLVNSPLSAPLSPSSTGTCPRLPGPTLRPACPASMPPTKDNLVPSYPAGSPSVAAACSQAECMGGSQAITSPLPANTPSPSFSKLPPSKASKSSKGKDGVEVEAPSRKRKLSPGPTTLKRTCILEPTGKGKPSGCRGLSAKTKTALSMGLNGTMGPRVKRAGPLDCRGSPHQLPTPVKASQLENRGAAGHPAKALPTNCLSEEEVAKKRKNLATYCRPVKAKHCQAGAPADVACSVRRKKPGPALAFEEKCSTLKSKAH", "length": 722 }, "evidence": [ { "id": "A0A9J7JBE3", "url": "https://omabrowser.org/oma/group/A0A9J7JBE3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 360, "end_pos": 362, "annotation": "n_glycosylation_sequon" }, { "start_pos": 361, "end_pos": 363, "annotation": "n_glycosylation_sequon" }, { "start_pos": 645, "end_pos": 647, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JBE3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBE3" }, { "id": "PS51505", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51505" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SCA7", "eco_id": "ECO_0000259", "start_pos": 262, "end_pos": 329, "start_aa": "Arg", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 360, "end_pos": 362 }, { "start_pos": 361, "end_pos": 363 }, { "start_pos": 645, "end_pos": 647 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7J7D3-1", "uniprot_ac": "A0A9J7J7D3", "uniprot_id": "A0A9J7J7D3_CRIGR", "mass": { "chemical_mass": 354717.0, "monoisotopic_mass": 354717.0 }, "refseq": { "ac": "XP_003495398", "name": "WD repeat- and FYVE domain-containing protein 4 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495398" }, "gene_names": [ { "name": "Wdfy4", "type": "recommended", "evidence": [ { "id": "A0A9J7J7D3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7D3" } ] }, { "name": "Wdfy4", "type": "synonym", "evidence": [ { "id": "XP_003495398", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495398" } ] } ], "protein_names": [ { "name": "WD repeat- and FYVE domain-containing protein 4 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003495398", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495398" }, { "id": "A0A9J7J7D3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7D3/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613589.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003495398", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495398" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J7D3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7D3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Wdfy4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7D3", "locus": {} } ], "crossref": [ { "id": "cd01201", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01201", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd06071", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06071", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100757936", "url": "https://www.ncbi.nlm.nih.gov/gene/100757936", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000409", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000409", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019775", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019775", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023362", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023362", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036372", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036372", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051944", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051944", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100757936", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757936", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7J7D3", "url": "https://www.orthodb.org/?gene=A0A9J7J7D3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46108", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46108", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46108:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46108:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00400", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00400", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02138", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02138", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003495398", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495398", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7EWX9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EWX9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EWX9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EWX9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F2B3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2B3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F2B3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2B3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HDB0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDB0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HDB0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDB0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HE11", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HE11", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HE11-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HE11-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J7D3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7D3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J7D3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7D3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEAEYLSKAEDRLEDPGFQNEGQSPALKPDFPLEGQCPGPTVLWDMLEKKFLEYQQLTHKNPEERRKNLLSLLPLFLKAWEHSVGIICFRSLQRLAEDVSDQLAQEIQQALAGKPAEQARAAAGQLLRWKGDMDQDGYLLLKSVYVLTGTDSETLGRVVGSGLPALLLQCLYLFFVFPVEKDELLESDVQGQRIFVQMLLNICSESQGLEGLLSGSELQSLLIATTCLREHSCYFWKEPTFCVLRAISKAQSPSIIQYLRTADWVRLSVQNLSKLADNLPAPEVCEAVNLVLNFVKDSYPVSSALLLEFENGEGYPLLLKVLLRYDGLTQGEEEPHLEELLELVMWLTTCGRSELKVFDSVTYPQLEGFKFHQEASGVTVKNLQAFQVLQNVFHRASDSVLCTKVLLAIKTMWAWNPRNFFLLEWTLQPISQFVEIMPMKPTPVQVQFFQLLETLVFKLLYVPHEILAKVQGLIKESPELSCTLVALQSILRITASDRLFTDIFRDSGLLGLLLAQLRKQAKIMRKSGHKEPSPGVQDPERELTCVMLNTVVALLQGSVRNAVVLKDHGMVPFIKIFLDDECYRGASLSILEQLSVINAEEYMSIIVGALCSSTQGELQLKLDLLKSLLRILETPKGHAAFRVSSGFNGLLSLLSDLEGSLQVPAVPTWGAVSPSQTLELVLHTLCVVSAALHLDPVNGHFFRSNGLFEKLAEDLCLLGCFGAPEEEGAQRLSSSDMKARPFMDFLSCAFSSSCPFPPRVQSCLQILSFLDNMASGTLHLRRDLMEPARAGQEPSVDAQKGDASGRQGKFKQWPDLEERMDEGDAMIMHPGIICIMVRLLPRLYLDDHPQLSEEIQCSVAGHLLSLVKSEKNRQVMCEAGMLRTLMTFCRRTLSTGGSVLHSLLIRIFEKLGSQAIEPDVLRQFLGLGIRPPQPATRKSLHSSPGHEDDPGHSGSCPDTAEKPRGAIPCPGGSQDLKSSWTSHDSATALQTSLSLISMTSPRNLQPQRAALTPSFVEFDMSMEGYGCLFTPTLSTVMGTSTEHSISGGTGSGTPRPFPPPGGLTFSCWFLISRQATVMEGHPLRFLTLVRHLARTEQPFVCFSVSLCMEDLSLVVSTEEKEFQPLDVMEPEDEAEPCAGRQLQIRCSQLLTCGQWYHLAVVVSKEMKRNCTVTTYLDGQAIGSAKMLYVQALPGPFLSMDPSSFVDVYGYIGTPRVWKQKSSLIWRLGPTYLFEEDISMDTLALIIKLGPRYCGNFQAVHLQGEDLDGEATPLIAEERVSFGLHVFSSSITSIMNIRNTYNEVDSRLIAKEMNISSRDNATPVFLLRNCAGHLSGPLRTLGAVAVGQLGVRVFHSSPAASSLDYIGGPAILLGLISLATDDHTMYAAMKVLHSVLTSNAMCDYLMQHICGYQILAFLLRKKTSFLNHRIFQLILSVAGTAELGFRPSSVTNKCVFQHVLCNFELWTNTADNLELALFSHLLDILQSPREGPRNAEVAHHAQLVPKLIFLFNEPSLALSKVSTIIAILGCQLKGHFNIQDFLRVGLFVIYTLKPSSVNERQICLDGAQDSSIPAGSQTSGKAIWLRNQLLEMLFGVISSPQLHLSSESKEQVFLNLGPDWFLLLLQGHLHPSTTTLALKLLLYFLSSPSLRGRFRDGLSAGCWVECSMEGVDIMMDNLKSRPAVPDQSPCLLPGFRVLNDFLAYHVLIPEVYLIVSSFFLQTPLTELTDGPRESLDSMLQWLLQKYHQQEVLQAGLCTEGALLLLGMLKAIMSQPPAGSGECVWEQTLPSSILQFLGLVHRSYPQDPAWRTPDFLQTLAIITFPLEAQKEAMPESSRNTSSPGASAESSSTAEGFQTSFMSHPTQRQLREFMQVLLKELLLGVSSPKQWLPLEVLLEAPPDGVSSQQKRDFQSEVLLSTMDIFYVTSRGSVPTPRGSTVPQPNPEAAAAPSLASISYFTQKLVEKLYSGIFSADPRHILIFIIEHIVVVIENPSSQRDTVLSALYSSLNKVILHCLSKPQQSLSECLSLLRILDFLQEHWDIIFATYNSNVSFLLCLMHCLLLLNARSYPEGFGLEPKPRIAPYHQVFLSPNEDVNDKKEEGLPSLSDVQHNIQKSVRTLWQQLVAQRRQTLEDTFKMDLSVKAGESEVKIEEVTPLWEETLLRAWQHYLASEKKSLANRSSLTYHSKVTSWSGSLSSAMRLMPGRQVKDPECRAEDFVSCIENYRRKGQELYASLYRDYVQRQKSGSIKAAMAWARIREQLFGELGLWGQMTSSTSCSQWELDRREGPARMRKRIRRLFSWEALNQVSCKESQDRKGAVSQTNAENQDELTSEEAESRPDEVGVDCTQLTFFPALHESLHSEDFLELCRERQVILQELLDGEKVSQKFPLVIVQGHLVSEGILLFGQQHFYICENFTLSPTGDVYCTRHCLSNISDPFIFNMCSKDRSSDHYSCQRHAYSDLRVLRPARFLLQDIALEIFFQNGYSKLLVFYNNDRSKASKSFCTFQPNLKGKVNTEDPFNLRRHPGFDRTMLQKWQKRELSNFEYLMYLNTLAGRTYNDYMQYPVFPWVLADYTSEMLNLTNPKTFRDLSKPMGAQTKERKSKFTQRFKEVEKIEGDMTVQCHYYTHYSSAIIVASYLVRMPPFTQAFCSLQGGSFDVADRMFHSVKNTWESASKENMSDVRELTPEFFYLPEFLTNCNAVEFGCMQDGTTLGDVQLPPWADGDPRKFISLHRQALESDFVSSNLHHWIDLIFGYKQQGPAAVEAVNTFHPYFYGDRIDLSSISDPLIKSTILGFISNFGQVPKQIFTKPHPSRNTTGKPPVPGKDTSTPTGFPGHSQSFLHNLPALRPSQVTVKDMYLFSLGSESPKGAIGHIVPTEKTILAVEKNKMLLPPLWNRTFSWGFDDFSCCLGNYGSDKILMTFENLAAWGPCLCAVCPCPTMIVTSGASAVVCVWELSLVKGRPKGLRLRQALYGHTQAVTCLTASVTFSLLVSGSQDRTCTLWDLDQLSRVACLPVHREGISAIAISDVSGTIVSCAGAHLSLWNVNGQPLASITTAWGPEGTITCCCIVEGPAWDANHFIITGSKDGMVRIWKTEDMKMSVPRKAVTEEPSTEPLSPRGHKWAKNLALSRELDVSVALSGKPSKASPAVTALAITRNQTKLLVGDEKGRIFCWSVDG", "length": 3179, "header": "tr|A0A9J7J7D3-1|A0A9J7J7D3_CRIGR Isoform 1 of WD repeat- and FYVE domain-containing protein 4 isoform X1 OS=Cricetulus griseus OX=10029 GN=Wdfy4 PE=4 SV=1 CANONICAL=A0A9J7J7D3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7EWX9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7D3/entry#A0A9J7EWX9-1", "sequence": { "sequence": "MEAEYLSKAEDRLEDPGFQNEGQSPALKPDFPLEGQCPGPTVLWDMLEKKFLEYQQLTHKNPEERRKNLLSLLPLFLKAWEHSVGIICFRSLQRLAEDVSDQLAQEIQQALAGKPAEQARAAAGQLLRWKGDMDQDGYLLLKSVYVLTGTDSETLGRVVGSGLPALLLQCLYLFFVFPVEKDELLESDVQGQRIFVQMLLNICSESQGLEGLLSGSELQSLLIATTCLREHSCYFWKEPTFCVLRAISKAQSPSIIQYLRTADWVRLSVQNLSKLADNLPAPEVCEAVNLVLNFVKDSYPVSSALLLEFENGEGYPLLLKVLLRYDGLTQGEEEPHLEELLELVMWLTTCGRSELKVFDSVTYPQLEGFKFHQEASGVTVKNLQAFQVLQNVFHRASDSVLCTKVLLAIKTMWAWNPRNFFLLEWTLQPISQFVEIMPMKPTPVQVQFFQLLETLVFKLLYVPHEILAKVQGLIKESPELSCTLVALQSILRITASDRLFTDIFRDSGLLGLLLAQLRKQAKIMRKSGHKEPSPGVQDPERELTCVMLNTVVALLQGSVRNAVVLKDHGMVPFIKIFLDDECYRGASLSILEQLSVINAEEYMSIIVGALCSSTQGELQLKLDLLKSLLRILETPKGHAAFRVSSGFNGLLSLLSDLEGSLQVPAVPTWGAVSPSQTLELVLHTLCVVSAALHLDPVNGHFFRSNGLFEKLAEDLCLLGCFGAPEEEGAQRLSSSDMKARPFMDFLSCAFSSSCPFPPRVQSCLQILSFLDNMASGTLHLRRDLMEPARAGQEPSVDAQKGDASGRQGKFKQWPDLEERMDEGDAMIMHPGIICIMVRLLPRLYLDDHPQLSEEIQCSVAGHLLSLVKSEKNRQVMCEAGMLRTLMTFCRRTLSTGGSVLHSLLIRIFEKLGSQAIEPDVLRQFLGLGIRPPQPATRKSLHSSPGHEDDPGHSGSCPDTAEKPRGAIPCPGGSQDLKSSWTSHDSATALQTSLSLISMTSPRNLQPQRAALTPSFVEFDMSMEGYGCLFTPTLSTVMGTSTEHSISGGTGSGTPRPFPPPGGLTFSCWFLISRQATVMEGHPLRFLTLVRHLARTEQPFVCFSVSLCMEDLSLVVSTEEKEFQPLDVMEPEDEAEPCAGRQLQIRCSQLLTCGQWYHLAVVVSKEMKRNCTVTTYLDGQAIGSAKMLYVQALPGPFLSMDPSSFVDVYGYIGTPRVWKQKSSLIWRLGPTYLFEEDISMDTLALIIKLGPRYCGNFQAVHLQGEDLDGEATPLIAEERVSFGLHVFSSSITSIMNIRNTYNEVDSRLIAKEMNISSRDNATPVFLLRNCAGHLSGPLRTLGAVAVGQLGVRVFHSSPAASSLDYIGGPAILLGLISLATDDHTMYAAMKVLHSVLTSNAMCDYLMQHICGYQLWTNTADNLELALFSHLLDILQSPREGPRNAEVAHHAQLVPKLIFLFNEPSLALSKVSTIIAILGCQLKGHFNIQDFLRVGLFVIYTLKPSSVNERQICLDGAQDSSIPAGSQTSGKAIWLRNQLLEMLFGVISSPQLHLSSESKEQVFLNLGPDWFLLLLQGHLHPSTTTLALKLLLYFLSSPSLRGRFRDGLSAGCWVECSMEGVDIMMDNLKSRPAVPDQSPCLLPGFRVLNDFLAYHVLIPEVYLIVSSFFLQTPLTELTDGPRESLDSMLQWLLQKYHQQEVLQAGLCTEGALLLLGMLKAIMSQPPAGSGECVWEQTLPSSILQFLGLVHRSYPQDPAWRTPDFLQTLAIITFPLEAQKEAMPESSRNTSSPGASAESSSTAEGFQTSFMSHPTQRQLREFMQVLLKELLLGVSSPKQWLPLEVLLEAPPDGVSSQQKRDFQSEVLLSTMDIFYVTSRGSVPTPRGSTVPQPNPEAAAAPSLASISYFTQKLVEKLYSGIFSADPRHILIFIIEHIVVVIENPSSQRDTVLSALYSSLNKVILHCLSKPQQSLSECLSLLRILDFLQEHWDIIFATYNSNVSFLLCLMHCLLLLNARSYPEGFGLEPKPRIAPYHQVFLSPNEDVNDKKEEGLPSLSDVQHNIQKSVRTLWQQLVAQRRQTLEDTFKMDLSVKAGESEVKIEEVTPLWEETLLRAWQHYLASEKKSLANRSSLTYHSKVTSWSGSLSSAMRLMPGRQVKDPECRAEDFVSCIENYRRKGQELYASLYRDYVQRQKSGSIKAAMAWARIREQLFGELGLWGQMTSSTSCSQWELDRREGPARMRKRIRRLFSWEALNQVSCKESQDRKGAVSQTNAENQDELTSEEAESRPDEVGVDCTQLTFFPALHESLHSEDFLELCRERQVILQELLDGEKVSQKFPLVIVQGHLVSEGILLFGQQHFYICENFTLSPTGDVYCTRHCLSNISDPFIFNMCSKDRSSDHYSCQRHAYSDLRVLRPARFLLQDIALEIFFQNGYSKLLVFYNNDRSKASKSFCTFQPNLKGKVNTEDPFNLRRHPGFDRTMLQKWQKRELSNFEYLMYLNTLAGRTYNDYMQYPVFPWVLADYTSEMLNLTNPKTFRDLSKPMGAQTKERKSKFTQRFKEVEKIEGDMTVQCHYYTHYSSAIIVASYLVRMPPFTQAFCSLQGGSFDVADRMFHSVKNTWESASKENMSDVRELTPEFFYLPEFLTNCNAVEFGCMQDGTTLGDVQLPPWADGDPRKFISLHRQALESDFVSSNLHHWIDLIFGYKQQGPAAVEAVNTFHPYFYGDRIDLSSISDPLIKSTILGFISNFGQVPKQIFTKPHPSRNTTGKPPVPGKDTSTPTGFPGHSQSFLHNLPALRPSQVTVKDMYLFSLGSESPKGAIGHIVPTEKTILAVEKNKMLLPPLWNRTFSWGFDDFSCCLGNYGSDKILMTFENLAAWGPCLCAVCPCPTMIVTSGASAVVCVWELSLVKGRPKGLRLRQALYGHTQAVTCLTASVTFSLLVSGSQDRTCTLWDLDQLSRVACLPVHREGISAIAISDVSGTIVSCAGAHLSLWNVNGQPLASITTAWGPEGTITCCCIVEGPAWDANHFIITGSKDGMVRIWKTEDMKMSVPRKAVTEEPSTEPLSPRGHKWAKNLALSRELDVSVALSGKPSKASPAVTALAITRNQTKLLVGDEKGRIFCWSVDG", "length": 3128, "header": "tr|A0A9J7EWX9-1|A0A9J7J7D3_CRIGR Computationally mapped isoform of WD repeat- and FYVE domain-containing protein 4 isoform X1 OS=Cricetulus griseus OX=10029 GN=Wdfy4 PE=4 SV=1 CANONICAL=A0A9J7J7D3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F2B3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7D3/entry#A0A9J7F2B3-1", "sequence": { "sequence": "MEAEYLSKAEDRLEDPGFQNEGQSPALKPDFPLEGQCPGPTVLWDMLEKKFLEYQQLTHKNPEERRKNLLSLLPLFLKAWEHSVGIICFRSLQRLAEDVSDQLAQEIQQALAGKPAEQARAAAGQLLRWKGDMDQDGYLLLKSVYVLTGTDSETLGRVVGSGLPALLLQCLYLFFVFPVEKDELLESDVQGQRIFVQMLLNICSESQGLEGLLSGSELQSLLIATTCLREHSCYFWKEPTFCVLRAISKAQSPSIIQYLRTADWVRLSVQNLSKLADNLPAPEVCEAVNLVLNFVKDSYPVSSALLLEFENGEGYPLLLKVLLRYDGLTQGEEEPHLEELLELVMWLTTCGRSELKVFDSVTYPQLEGFKFHQEASGVTVKNLQAFQVLQNVFHRASDSVLCTKVLLAIKTMWAWNPRNFFLLEWTLQPISQFVEIMPMKPTPVQVQFFQLLETLVFKLLYVPHEILAKVQGLIKESPELSCTLVALQSILRITASDRLFTDIFRDSGLLGLLLAQLRKQAKIMRKSGHKEPSPGVQDPERELTCVMLNTVVALLQGSVRNAVVLKDHGMVPFIKIFLDDECYRGASLSILEQLSVINAEEYMSIIVGALCSSTQGELQLKLDLLKSLLRILETPKGHAAFRVSSGFNGLLSLLSDLEGSLQVPAVPTWGAVSPSQTLELVLHTLCVVSAALHLDPVNGHFFRSNGLFEKLAEDLCLLGCFGAPEEEGAQRLSSSDMKARPFMDFLSCAFSSSCPFPPRVQSCLQILSFLDNMASGTLHLRRDLMEPARAGQEPSVDAQKGDASGRQGKFKQWPDLEERMDEGDAMIMHPGIICIMVRLLPRLYLDDHPQLSEEIQCSVAGHLLSLVKSEKNRQVMCEAGMLRTLMTFCRRTLSTGGSVLHSLLIRIFEKLGSQAIEPDVLRQFLGLGIRPPQPATRKSLHSSPGHEDDPGHSGSCPDTAEKPRGAIPCPGGSQDLKSSWTSHDSATALQTSLSLISMTSPRNLQPQRAALTPSFVEFDMSMEGYGCLFTPTLSTVMGTSTEHSISGGTGSGTPRPFPPPGGLTFSCWFLISRQATVMEGHPLRFLTLVRHLARTEQPFVCFSVSLCMEDLSLVVSTEEKEFQPLDVMEPEDEAEPCAGRQLQIRCSQLLTCGQWYHLAVVVSKEMKRNCTVTTYLDGQAIGSAKMLYVQALPGPFLSMDPSSFVDVYGYIGTPRVWKQKSSLIWRLGPTYLFEEDISMDTLALIIKLGPRYCGNFQAVHLQGEDLDGEATPLIAEERVSFGLHVFSSSITSIMNIRNTYNEVDSRLIAKEMNISSRDNATPVFLLRNCAGHLSGPLRTLGAVAVGQLGVRVFHSSPAASSLDYIGGPAILLGLISLATDDHTMYAAMKVLHSVLTSNAMCDYLMQHICGYQILAFLLRKKTSFLNHRIFQLILSVAGTAELGFRPSSVTNKCVFQHVLCNFELWTNTADNLELALFSHLLDILQSPREGPRNAEVAHHAQLVPKLIFLFNEPSLALSKVSTIIAILGCQLKGHFNIQDFLRVGLFVIYTLKPSSVNERQICLDGAQDSSIPAGSQTSGKAIWLRNQLLEMLFGVISSPQLHLSSESKEQVFLNLGPDWFLLLLQGHLHPSTTTLALKLLLYFLSSPSLRGRFRDGLSAGCWVECSMEGVDIMMDNLKSRPAVPDQSPCLLPGFRVLNDFLAYHVLIPEVYLIVSSFFLQTPLTELTDGPRESLDSMLQWLLQKYHQQEVLQAGLCTEGALLLLGMLKAIMSQPPAGSGECVWEQTLPSSILQFLGLVHRSYPQDPAWRTPDFLQTLAIITFPLEAQKEAMPESSRNTSSPGASAESSSTAEGFQTSFMSHPTQRQLREFMQVLLKELLLGVSSPKQWLPLEVLLEAPPDGVSSQQKRDFQSEVLLSTMDIFYVTSRGSVPTPRGSTVPQPNPEAAAAPSLASISYFTQKLVEKLYSGIFSADPRHILIFIIEHIVVVIENPSSQRDTVLSALYSSLNKVILHCLSKPQQSLSECLSLLRILDFLQEHWDIIFATYNSNVSFLLCLMHCLLLLNARSYPEGFGLEPKPRIAPYHQVFLSPNEDVNDKKEEGLPSLSDVQHNIQKSVRTLWQQLVAQRRQTLEDTFKMDLSVKAGESEVKIEEVTPLWEETLLRAWQHYLASEKKSLANRSSLTYHSKVTSWSGSLSSAMRLMPGRQVKDPECRAEDFVSCIENYRRKGQELYASLYRDYVQRQKSGSIKAAMAWARIREQLFGELGLWGQMTSSTSCSQWELDRREGPARMRKRIRRLFSWEALNQVSCKESQDRKGAVSQTNAENQDELTSEEAESRPDEVGVDCTQLTFFPALHESLHSEDFLELCRERQVILQELLDGEKVSQKFPLVIVQGHLVSEGILLFGQQHFYICENFTLSPTGDVYCTRHCLSNISDPFIFNMCSKDRSSDHYSCQRHAYSDLRVLRPARFLLQDIALEIFFQNGYSKLLVFYNNDRSKASKSFCTFQPNLKGKVNTEDPFNLRRHPGFDRTMLQKWQKRELSNFEYLMYLNTLAGRTYNDYMQYPVFPWVLADYTSEMLNLTNPKTFRDLSKPMGAQTKERKSKFTQRFKEVEKIEGDMTVQCHYYTHYSSAIIVASYLVRMPPFTQAFCSLQGGSFDVADRMFHSVKNTWESASKENMSDVRELTPEFFYLPEFLTNCNAVEFGCMQDGTTLGDVQLPPWADGDPRKFISLHRQALESDFVSSNLHHWIDLIFGYKQQGPAAVEAVNTFHPYFYGDRIDLSSISDPLIKSTILGFISNFGQVPKQIFTKPHPSRNTTGKPPVPGKDTSTPTGFPGHSQSFLHNLPALRPSQVTVKGSESPKGAIGHIVPTEKTILAVEKNKMLLPPLWNRTFSWGFDDFSCCLGNYGSDKILMTFENLAAWGPCLCAVCPCPTMIVTSGASAVVCVWELSLVKGRPKGLRLRQALYGHTQAVTCLTASVTFSLLVSGSQDRTCTLWDLDQLSRVACLPVHREGISAIAISDVSGTIVSCAGAHLSLWNVNGQPLASITTAWGPEGTITCCCIVEGPAWDANHFIITGSKDGMVRIWKTEDMKMSVPRKAVTEEPSTEPLSPRGHKWAKNLALSRELDVSVALSGKPSKASPAVTALAITRNQTKLLVGDEKGRIFCWSVDG", "length": 3172, "header": "tr|A0A9J7F2B3-1|A0A9J7J7D3_CRIGR Computationally mapped isoform of WD repeat- and FYVE domain-containing protein 4 isoform X1 OS=Cricetulus griseus OX=10029 GN=Wdfy4 PE=4 SV=1 CANONICAL=A0A9J7J7D3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HDB0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7D3/entry#A0A9J7HDB0-1", "sequence": { "sequence": "MEAEYLSKAEDRLEDPGFQNEGQSPALKPDFPLEGQCPGPTVLWDMLEKKFLEYQQLTHKNPEERRKNLLSLLPLFLKAWEHSVGIICFRSLQRLAEDVSDQLAQEIQQALAGKPAEQARAAAGQLLRWKGDMDQDGYLLLKSVYVLTGTDSETLGRVVGSGLPALLLQCLYLFFVFPVEKDELLESDVQGQRIFVQMLLNICSESQGLEGLLSGSELQSLLIATTCLREHSCYFWKEPTFCVLRAISKAQSPSIIQYLRTADWVRLSVQNLSKLADNLPAPEVCEAVNLVLNFVKDSYPVSSALLLEFENGEGYPLLLKVLLRYDGLTQGEEEPHLEELLELVMWLTTCGRSELKVFDSVTYPQLEGFKFHQEASGVTVKNLQAFQVLQNVFHRASDSVLCTKVLLAIKTMWAWNPRNFFLLEWTLQPISQFVEIMPMKPTPVQVQFFQLLETLVFKLLYVPHEILAKVQGLIKESPELSCTLVALQSILRITASDRLFTDIFRDSGLLGLLLAQLRKQAKIMRKSGHKEPSPGVQDPERELTCVMLNTVVALLQGSVRNAVVLKDHGMVPFIKIFLDDECYRGASLSILEQLSVINAEEYMSIIVGALCSSTQGELQLKLDLLKSLLRILETPKGHAAFRVSSGFNGLLSLLSDLEGSLQVPAVPTWGAVSPSQTLELVLHTLCVVSAALHLDPVNGHFFRSNGLFEKLAEDLCLLGCFGAPEEEGAQRLSSSDMKARPFMDFLSCAFSSSCPFPPRVQSCLQILSFLDNMASGTLHLRRDLMEPARAGQEPSVDAQKGDASGRQGKFKQWPDLEERMDEGDAMIMHPGIICIMVRLLPRLYLDDHPQLSEEIQCSVAGHLLSLVKSEKNRQVMCEAGMLRTLMTFCRRTLSTGGSVLHSLLIRIFEKLGSQAIEPDVLRQFLGLGIRPPQPATRKSLHSSPGHEDDPGHSGSCPDTAEKPRGAIPCPGGSQDLKSSWTSHDSATALQTSLSLISMTSPRNLQPQRAALTPSFVEFDMSMEGYGCLFTPTLSTVMGTSTEHSISGGTGSGTPRPFPPPGGLTFSCWFLISRQATVMEGHPLRFLTLVRHLARTEQPFVCFSVSLCMEDLSLVVSTEEKEFQPLDVMEPEDEAEPCAGRQLQIRCSQLLTCGQWYHLAVVVSKEMKRNCTVTTYLDGQAIGSAKMLYVQALPGPFLSMDPSSFVDVYGYIGTPRVWKQKSSLIWRLGPTYLFEEDISMDTLALIIKLGPRYCGNFQAVHLQGEDLDGEATPLIAEERVSFGLHVFSSSITSIMNIRNTYNEVDSRLIAKEMNISSRDNATPVFLLRNCAGHLSGPLRTLGAVAVGQLGVRVFHSSPAASSLDYIGGPAILLGLISLATDDHTMYAAMKVLHSVLTSNAMCDYLMQHICGYQILAFLLRKKTSFLNHRIFQLILSVAGTAELGFRPSSVTNKCVFQHVLCNFELWTNTADNLELALFSHLLDILQSPREGPRNAEVAHHAQLVPKLIFLFNEPSLALSKVSTIIAILGCQLKGHFNIQDFLRVGLFVIYTLKPSSVNERQICLDGAQDSSIPAGSQTSGKAIWLRNQLLEMLFGVISSPQLHLSSE", "length": 1606, "header": "tr|A0A9J7HDB0-1|A0A9J7J7D3_CRIGR Computationally mapped isoform of WD repeat- and FYVE domain-containing protein 4 isoform X1 OS=Cricetulus griseus OX=10029 GN=Wdfy4 PE=4 SV=1 CANONICAL=A0A9J7J7D3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HE11-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7D3/entry#A0A9J7HE11-1", "sequence": { "sequence": "MEAEYLSKAEDRLEDPGFQNEGQSPALKPDFPLEGQCPGPTVLWDMLEKKFLEYQQLTHKNPEERRKNLLSLLPLFLKAWEHSVGIICFRSLQRLAEDVSDQLAQEIQQALAGKPAEQARAAAGQLLRWKGDMDQDGYLLLKSVYVLTGTDSETLGRVVGSGLPALLLQCLYLFFVFPVEKDELLESDVQGQRIFVQMLLNICSESQGLEGLLSGSELQSLLIATTCLREHSCYFWKEPTFCVLRAISKAQSPSIIQYLRTADWVRLSVQNLSKLADNLPAPEVCEAVNLVLNFVKDSYPVSSALLLEFENGEGYPLLLKVLLRYDGLTQGEEEPHLEELLELVMWLTTCGRSELKVFDSVTYPQLEGFKFHQEASGVTVKNLQAFQVLQNVFHRASDSVLCTKVLLAIKTMWAWNPRNFFLLEWTLQPISQFVEIMPMKPTPVQVQFFQLLETLVFKLLYVPHEILAKVQGLIKESPELSCTLVALQSILRITASDRLFTDIFRDSGLLGLLLAQLRKQAKIMRKSGHKEPSPGVQDPERELTCVMLNTVVALLQGSVRNAVVLKDHGMVPFIKIFLDDECYRGASLSILEQLSVINAEEYMSIIVGALCSSTQGELQLKLDLLKSLLRILETPKGHAAFRVSSGFNGLLSLLSDLEGSLQVPAVPTWGAVSPSQTLELVLHTLCVVSAALHLDPVNGHFFRSNGLFEKLAEDLCLLGCFGAPEEEGAQRLSSSDMKARPFMDFLSCAFSSSCPFPPRVQSCLQILSFLDNMASGTLHLRRDLMEPARAGQEPSVDAQKGDASGRQGKFKQWPDLEERMDEGDAMIMHPGIICIMVRLLPRLYLDDHPQLSEEIQCSVAGHLLSLVKSEKNRQVMCEAGMLRTLMTFCRRTLSTGGSVLHSLLIRIFEKLGSQAIEPDVLRQFLGLGIRPPQPATRKSLHSSPGHEDDPGHSGSCPDTAEKPRGAIPCPGGSQDLKSSWTSHDSATALQTSLSLISMTSPRNLQPQRAALTPSFVEFDMSMEGYGCLFTPTLSTVMGTSTEHSISGGTGSGTPRPFPPPGGLTFSCWFLISRQATVMEGHPLRFLTLVRHLARTEQPFVCFSVSLCMEDLSLVVSTEEKEFQPLDVMEPEDEAEPCAGRQLQIRCSQLLTCGQWYHLAVVVSKEMKRNCTVTTYLDGQAIGSAKMLYVQALPGPFLSMDPSSFVDVYGYIGTPRVWKQKSSLIWRLGPTYLFEEDISMDTLALIIKLGPRYCGNFQAVHLQGEDLDGEATPLIAEERVSFGLHVFSSSITSIMNIRNTYNEVDSRLIAKEMNISSRDNATPVFLLRNCAGHLSGPLRTLGAVAVGQLGVRVFHSSPAASSLDYIGGPAILLGLISLATDDHTMYAAMKVLHSVLTSNAMCDYLMQHICGYQILAFLLRKKTSFLNHRIFQLILSVAGTAELGFRPSSVTNKCVFQHVLCNFELWTNTADNLELALFSHLLDILQSPREGPRNAEVAHHAQLVPKLIFLFNEPSLALSKVSTIIAILGCQLKGHFNIQDFLRVGLFVIYTLKPSSVNERQICLDGAQDSSIPAGSQTSGKAIWLRNQLLEMLFGVISSPQLHLSSESKEQVFLNLGPDWFLLLLQGHLHPSTTTLALKLLLYFLSSPSLRGRFRDGLSAGCWVECSMEGVDIMMDNLKSRPAVPDQSPCLLPGFRVLNDFLAYHVLIPEVYLIVSSFFLQTPLTELTDGPRESLDSMLQWLLQKYHQQEVLQAGLCTEGALLLLGMLKAIMSQPPAGSGECVWEQTLPSSILQFLGLVHRSYPQDPAWRTPDFLQTLAIITFPLEAQKEAMPESSRNTSSPGASAESSSTAEGFQTSFMSHPTQRQLREFMQVLLKELLLGVSSPKQWLPLEVLLEAPPDGVSSQQKRDFQSEVLLSTMDIFYVTSRGSVPTPRGSTVPQPNPEAAAAPSLASISYFTQKLVEKLYSGIFSADPRHILIFIIEHIVVVIENPSSQRDTVLSALYSSLNKVILHCLSKPQQSLSECLSLLRILDFLQEHWDIIFATYNSNVSFLLCLMHCLLLLNARSYPEGFGLEPKPRIAPYHQVFLSPNEDVNDKKEEGLPSLSDVQHNIQKSVRTLWQQLVAQRRQTLEDTFKMDLSVKAGESEVKIEEVTPLWEETLLRAWQHYLASEKKSLANRSSLTYHSKVTSWSGSLSSAMRLMPGRQVKDPECRAERQKSGSIKAAMAWARIREQLFGELGLWGQMTSSTSCSQWELDRREGPARMRKRIRRLFSWEALNQVSCKESQDRKGAVSQTNAENQDELTSEEAESRPDEVGVDCTQLTFFPALHESLHSEDFLELCRERQVILQELLDGEKVSQKFPLVIVQGHLVSEGILLFGQQHFYICENFTLSPTGDVYCTRHCLSNISDPFIFNMCSKDRSSDHYSCQRHAYSDLRVLRPARFLLQDIALEIFFQNGYSKLLVFYNNDRSKASKSFCTFQPNLKGKVNTEDPFNLRRHPGFDRTMLQKWQKRELSNFEYLMYLNTLAGRTYNDYMQYPVFPWVLADYTSEMLNLTNPKTFRDLSKPMGAQTKERKSKFTQRFKEVEKIEGDMTVQCHYYTHYSSAIIVASYLVRMPPFTQAFCSLQGGSFDVADRMFHSVKNTWESASKENMSDVRELTPEFFYLPEFLTNCNAVEFGCMQDGTTLGDVQLPPWADGDPRKFISLHRQALESDFVSSNLHHWIDLIFGYKQQGPAAVEAVNTFHPYFYGDRIDLSSISDPLIKSTILGFISNFGQVPKQIFTKPHPSRNTTGKPPVPGKDTSTPTGFPGHSQSFLHNLPALRPSQVTVKDMYLFSLGSESPKGAIGHIVPTEKTILAVEKNKMLLPPLWNRTFSWGFDDFSCCLGNYGSDKILMTFENLAAWGPCLCAVCPCPTMIVTSGASAVVCVWELSLVKGRPKGLRLRQALYGHTQAVTCLTASVTFSLLVSGSQDRTCTLWDLDQLSRVACLPVHREGISAIAISDVSGTIVSCAGAHLSLWNVNGQPLASITTAWGPEGTITCCCIVEGPAWDANHFIITGSKDGMVRIWKTEDMKMSVPRKAVTEEPSTEPLSPRGHKWAKNLALSRELDVSVALSGKPSKASPAVTALAITRNQTKLLVGDEKGRIFCWSVDG", "length": 3153, "header": "tr|A0A9J7HE11-1|A0A9J7HE11_CRIGR Computationally mapped isoform of WD repeat- and FYVE domain-containing protein 4 isoform X3 OS=Cricetulus griseus OX=10029 GN=Wdfy4 PE=4 SV=1 CANONICAL=A0A9J7J7D3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J7D3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7D3/entry#A0A9J7J7D3-1", "sequence": { "sequence": "MEAEYLSKAEDRLEDPGFQNEGQSPALKPDFPLEGQCPGPTVLWDMLEKKFLEYQQLTHKNPEERRKNLLSLLPLFLKAWEHSVGIICFRSLQRLAEDVSDQLAQEIQQALAGKPAEQARAAAGQLLRWKGDMDQDGYLLLKSVYVLTGTDSETLGRVVGSGLPALLLQCLYLFFVFPVEKDELLESDVQGQRIFVQMLLNICSESQGLEGLLSGSELQSLLIATTCLREHSCYFWKEPTFCVLRAISKAQSPSIIQYLRTADWVRLSVQNLSKLADNLPAPEVCEAVNLVLNFVKDSYPVSSALLLEFENGEGYPLLLKVLLRYDGLTQGEEEPHLEELLELVMWLTTCGRSELKVFDSVTYPQLEGFKFHQEASGVTVKNLQAFQVLQNVFHRASDSVLCTKVLLAIKTMWAWNPRNFFLLEWTLQPISQFVEIMPMKPTPVQVQFFQLLETLVFKLLYVPHEILAKVQGLIKESPELSCTLVALQSILRITASDRLFTDIFRDSGLLGLLLAQLRKQAKIMRKSGHKEPSPGVQDPERELTCVMLNTVVALLQGSVRNAVVLKDHGMVPFIKIFLDDECYRGASLSILEQLSVINAEEYMSIIVGALCSSTQGELQLKLDLLKSLLRILETPKGHAAFRVSSGFNGLLSLLSDLEGSLQVPAVPTWGAVSPSQTLELVLHTLCVVSAALHLDPVNGHFFRSNGLFEKLAEDLCLLGCFGAPEEEGAQRLSSSDMKARPFMDFLSCAFSSSCPFPPRVQSCLQILSFLDNMASGTLHLRRDLMEPARAGQEPSVDAQKGDASGRQGKFKQWPDLEERMDEGDAMIMHPGIICIMVRLLPRLYLDDHPQLSEEIQCSVAGHLLSLVKSEKNRQVMCEAGMLRTLMTFCRRTLSTGGSVLHSLLIRIFEKLGSQAIEPDVLRQFLGLGIRPPQPATRKSLHSSPGHEDDPGHSGSCPDTAEKPRGAIPCPGGSQDLKSSWTSHDSATALQTSLSLISMTSPRNLQPQRAALTPSFVEFDMSMEGYGCLFTPTLSTVMGTSTEHSISGGTGSGTPRPFPPPGGLTFSCWFLISRQATVMEGHPLRFLTLVRHLARTEQPFVCFSVSLCMEDLSLVVSTEEKEFQPLDVMEPEDEAEPCAGRQLQIRCSQLLTCGQWYHLAVVVSKEMKRNCTVTTYLDGQAIGSAKMLYVQALPGPFLSMDPSSFVDVYGYIGTPRVWKQKSSLIWRLGPTYLFEEDISMDTLALIIKLGPRYCGNFQAVHLQGEDLDGEATPLIAEERVSFGLHVFSSSITSIMNIRNTYNEVDSRLIAKEMNISSRDNATPVFLLRNCAGHLSGPLRTLGAVAVGQLGVRVFHSSPAASSLDYIGGPAILLGLISLATDDHTMYAAMKVLHSVLTSNAMCDYLMQHICGYQILAFLLRKKTSFLNHRIFQLILSVAGTAELGFRPSSVTNKCVFQHVLCNFELWTNTADNLELALFSHLLDILQSPREGPRNAEVAHHAQLVPKLIFLFNEPSLALSKVSTIIAILGCQLKGHFNIQDFLRVGLFVIYTLKPSSVNERQICLDGAQDSSIPAGSQTSGKAIWLRNQLLEMLFGVISSPQLHLSSESKEQVFLNLGPDWFLLLLQGHLHPSTTTLALKLLLYFLSSPSLRGRFRDGLSAGCWVECSMEGVDIMMDNLKSRPAVPDQSPCLLPGFRVLNDFLAYHVLIPEVYLIVSSFFLQTPLTELTDGPRESLDSMLQWLLQKYHQQEVLQAGLCTEGALLLLGMLKAIMSQPPAGSGECVWEQTLPSSILQFLGLVHRSYPQDPAWRTPDFLQTLAIITFPLEAQKEAMPESSRNTSSPGASAESSSTAEGFQTSFMSHPTQRQLREFMQVLLKELLLGVSSPKQWLPLEVLLEAPPDGVSSQQKRDFQSEVLLSTMDIFYVTSRGSVPTPRGSTVPQPNPEAAAAPSLASISYFTQKLVEKLYSGIFSADPRHILIFIIEHIVVVIENPSSQRDTVLSALYSSLNKVILHCLSKPQQSLSECLSLLRILDFLQEHWDIIFATYNSNVSFLLCLMHCLLLLNARSYPEGFGLEPKPRIAPYHQVFLSPNEDVNDKKEEGLPSLSDVQHNIQKSVRTLWQQLVAQRRQTLEDTFKMDLSVKAGESEVKIEEVTPLWEETLLRAWQHYLASEKKSLANRSSLTYHSKVTSWSGSLSSAMRLMPGRQVKDPECRAEDFVSCIENYRRKGQELYASLYRDYVQRQKSGSIKAAMAWARIREQLFGELGLWGQMTSSTSCSQWELDRREGPARMRKRIRRLFSWEALNQVSCKESQDRKGAVSQTNAENQDELTSEEAESRPDEVGVDCTQLTFFPALHESLHSEDFLELCRERQVILQELLDGEKVSQKFPLVIVQGHLVSEGILLFGQQHFYICENFTLSPTGDVYCTRHCLSNISDPFIFNMCSKDRSSDHYSCQRHAYSDLRVLRPARFLLQDIALEIFFQNGYSKLLVFYNNDRSKASKSFCTFQPNLKGKVNTEDPFNLRRHPGFDRTMLQKWQKRELSNFEYLMYLNTLAGRTYNDYMQYPVFPWVLADYTSEMLNLTNPKTFRDLSKPMGAQTKERKSKFTQRFKEVEKIEGDMTVQCHYYTHYSSAIIVASYLVRMPPFTQAFCSLQGGSFDVADRMFHSVKNTWESASKENMSDVRELTPEFFYLPEFLTNCNAVEFGCMQDGTTLGDVQLPPWADGDPRKFISLHRQALESDFVSSNLHHWIDLIFGYKQQGPAAVEAVNTFHPYFYGDRIDLSSISDPLIKSTILGFISNFGQVPKQIFTKPHPSRNTTGKPPVPGKDTSTPTGFPGHSQSFLHNLPALRPSQVTVKDMYLFSLGSESPKGAIGHIVPTEKTILAVEKNKMLLPPLWNRTFSWGFDDFSCCLGNYGSDKILMTFENLAAWGPCLCAVCPCPTMIVTSGASAVVCVWELSLVKGRPKGLRLRQALYGHTQAVTCLTASVTFSLLVSGSQDRTCTLWDLDQLSRVACLPVHREGISAIAISDVSGTIVSCAGAHLSLWNVNGQPLASITTAWGPEGTITCCCIVEGPAWDANHFIITGSKDGMVRIWKTEDMKMSVPRKAVTEEPSTEPLSPRGHKWAKNLALSRELDVSVALSGKPSKASPAVTALAITRNQTKLLVGDEKGRIFCWSVDG", "length": 3179, "header": "tr|A0A9J7J7D3-1|A0A9J7J7D3_CRIGR Isoform 1 of WD repeat- and FYVE domain-containing protein 4 isoform X1 OS=Cricetulus griseus OX=10029 GN=Wdfy4 PE=4 SV=1 CANONICAL=A0A9J7J7D3-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 41, "start_aa": "Thr", "end_pos": 41, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr41", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EWX9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EWX9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EWX9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EWX9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100757936", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757936", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "antigen processing and presentation", "id": "GO:0019882", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019882", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J7D3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7D3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1169, "end_pos": 1171, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1313, "end_pos": 1315, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1319, "end_pos": 1321, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1837, "end_pos": 1839, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2049, "end_pos": 2051, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2178, "end_pos": 2180, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2415, "end_pos": 2417, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2433, "end_pos": 2435, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2580, "end_pos": 2582, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2678, "end_pos": 2680, "annotation": "n_glycosylation_sequon" }, { "start_pos": 271, "end_pos": 273, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2816, "end_pos": 2818, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2897, "end_pos": 2899, "annotation": "n_glycosylation_sequon" }, { "start_pos": 3159, "end_pos": 3161, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7J7D3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7D3" }, { "id": "PS50197", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50197" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BEACH", "eco_id": "ECO_0000259", "start_pos": 2521, "end_pos": 2815, "start_aa": "Asn", "end_aa": "Arg", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7J7D3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7D3" }, { "id": "PS51783", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51783" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BEACH-type PH", "eco_id": "ECO_0000259", "start_pos": 2379, "end_pos": 2504, "start_aa": "Leu", "end_aa": "Cys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 41 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1169, "end_pos": 1171 }, { "start_pos": 1313, "end_pos": 1315 }, { "start_pos": 1319, "end_pos": 1321 }, { "start_pos": 1837, "end_pos": 1839 }, { "start_pos": 2049, "end_pos": 2051 }, { "start_pos": 2178, "end_pos": 2180 }, { "start_pos": 2415, "end_pos": 2417 }, { "start_pos": 2433, "end_pos": 2435 }, { "start_pos": 2580, "end_pos": 2582 }, { "start_pos": 2678, "end_pos": 2680 }, { "start_pos": 271, "end_pos": 273 }, { "start_pos": 2816, "end_pos": 2818 }, { "start_pos": 2897, "end_pos": 2899 }, { "start_pos": 3159, "end_pos": 3161 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7J5Z4-1", "uniprot_ac": "A0A9J7J5Z4", "uniprot_id": "A0A9J7J5Z4_CRIGR", "mass": { "chemical_mass": 102688.0, "monoisotopic_mass": 102688.0 }, "refseq": { "ac": "XP_027243087", "name": "smoothelin isoform X4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243087" }, "gene_names": [ { "name": "Smtn", "type": "recommended", "evidence": [ { "id": "A0A9J7J5Z4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J5Z4" } ] }, { "name": "Smtn", "type": "synonym", "evidence": [ { "id": "XP_027243087", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243087" } ] } ], "protein_names": [ { "name": "Smoothelin isoform X4", "type": "synonym", "evidence": [ { "id": "A0A9J7J5Z4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J5Z4/entry#names_and_taxonomy" } ] }, { "name": "smoothelin isoform X4", "type": "synonym", "evidence": [ { "id": "XP_027243087", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243087" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027243087", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243087" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J5Z4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J5Z4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Smtn", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J5Z4", "locus": {} } ], "crossref": [ { "id": "A0A9J7J5Z4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7J5Z4", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd21258", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21258", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd21259", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21259", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100762366", "url": "https://www.ncbi.nlm.nih.gov/gene/100762366", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001715", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001715", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022189", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022189", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036872", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036872", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050540", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050540", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100762366", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762366", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7J5Z4", "url": "https://www.orthodb.org/?gene=A0A9J7J5Z4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23167", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23167", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23167:SF52", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23167:SF52", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00307", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00307", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12510", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12510", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027243087", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243087", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7EZ14", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZ14", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EZ14-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZ14-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EZY0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZY0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EZY0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZY0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J402", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J402", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J402-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J402-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J5U5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J5U5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J5U5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J5U5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J5Z4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J5Z4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J5Z4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J5Z4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MMADEALAGLDEGALRKLLEVTADLAERRRIRSAIRELQRQELEREEGALASKRFRAERQDNKENWLHSQQREAEQQAALARLAGRLESMNDVEELTILLRSAGEYEERKLIRAAIRRVRAQEIEAATLAGRLCSRLPSSDSQEESRRQAAHRLDPGKVPEQEQQKQQTEVPEPTPTPSPTPEDTSQDVTTVTLLLRAPPGGAPSSPTSPDSSPTTASPEPLLEPAGAQCPVAEALDSSEPLPQPSGAPSPEPPLSPAPPSSQGQVISKPLPDPTEPSTTLGPARGSSNTKRADLTELQPCQCSVSVLSPRQPAPNREPAPLARSSQFQRTGSVRDRVRKFTSDSPVAARLQDGPRTALTSLTPTKLLGSSCIGTTPASSNSSSRGPSDTSSHKKQRELAHSLAQLQSCPREEGPGGRGLTPRSLENRAGGPKPCSEEPSTPLPVGIGTGEPGGSMKTTTFTIEIKDGRGQASAGRVLLPTGNQRAELTLGLRTPPTLLSTSSGGKSTITRVSSPGTVTRLGSVTHVTTFSHASPGNRGGCNFKMEPDPAEPPTATVEAANGTEQTRVDKAPEERGPLSADELMAIEDEGVLDKMLDQTTNFEERKLIRAALRELRQRKRDQRDREREQRLREARARPGESRSNTATETTTRHSQRAADGSAVSTVTKTERLVHSNDGTQTARTTTVESSFVRRSENGSSSSTTVQTKTFSSSSSSSSSKKMGSIFDREDQASPRPGSLAALEKRQAEKKKELMKAQSLPKTSASQARKAMIEKLEKEGSAGSPGTPRTAVQRSTSFGVPNANSIKQMLLDWCRAKTRGYEHVDIQNFSSSWSDGMAFCALVHNFFPEAFDYGQLSPQNRRQNFEMAFSSAETHADCPQLLDTEDMVRLREPDWKMLVDCVPLVEVEDMMIMGKKPDPKCVFTYVQSLYNHLRRHELRLRGKNV", "length": 944, "header": "tr|A0A9J7J5Z4-1|A0A9J7J5Z4_CRIGR Isoform 1 of Smoothelin isoform X4 OS=Cricetulus griseus OX=10029 GN=Smtn PE=3 SV=1 CANONICAL=A0A9J7J5Z4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7EZ14-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J5Z4/entry#A0A9J7EZ14-1", "sequence": { "sequence": "MMADEALAGLDEGALRKLLEVTADLAERRRIRSAIRELQRQELEREEGALASKRFRAERQDNKENWLHSQQREAEQQAALARLAGRLESMNDVEELTILLRSAGEYEERKLIRAAIRRVRAQEIEAATLAGRLCSRLPSSDSQEESRRQAAHRLDPGKVPEQEQQKQQTEVPEPTPTPSPTPEDTSQDVTTVTLLLRAPPGGAPSSPTSPDSSPTTASPEPLLEPAGAQCPVAEALDSSEPLPQPSGAPSPEPPLSPAPPSSQGQVISKPLPDPTEPSTTLGPARGSSNTKRADLTELQPCQCSVSVLSPRQPAPNREPAPLARSSQFQRTGSVRDRVRKFTSDSPVAARLQDGPRTALTSLTPTKLLGSSCIGTTPASSNSSSRGPSDTSSHKKQRELAHSLAQLQSCPREEGPGGRGLTPRSLENRAGGPKPCSEEPSTPLPVGIGTGEPGGSMKTTTFTIEIKDGRGQASAGRVLLPTGNQRAELTLGLRTPPTLLSTSSGGKSTITRVSSPGTVTRLGSVTHVTTFSHASPGNRGGCNFKMEPDPAEPPTATVEAANGTEQTRVDKAPEERGPLSADELMAIEDEGVLDKMLDQTTNFEERKLIRAALRELRQRKRDQRDREREQRLREARARPGESRSNTATETTTRHSQRAADGSAVSTVTKTERLVHSNDGTQTARTTTVESSFVRRSENGSSSSTTVQTKTFSSSSSSSSSKKMGSIFDREDQASPRPGSLAALEKRQAEKKKELMKAQSLPKTSASQARKAMIEKLEKEGSAGSPGTPRTAVQRSTSFGVPNANSIKQMLLDWCRAKTRGYEHVDIQNFSSSWSDGMAFCALVHNFFPEAFDYGQLSPQNRRQNFEMAFSSAETHADCPQLLDTEDMVRLREPDWKCVYTYIQEFYRCLVQKGLVKTKKS", "length": 919, "header": "tr|A0A9J7EZ14-1|A0A9J7J5Z4_CRIGR Computationally mapped isoform of Smoothelin isoform X4 OS=Cricetulus griseus OX=10029 GN=Smtn PE=3 SV=1 CANONICAL=A0A9J7J5Z4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7EZY0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J5Z4/entry#A0A9J7EZY0-1", "sequence": { "sequence": "MMADEALAGLDEGALRKLLEVTADLAERRRIRSAIRELQRQELEREEGALASKRFRAERQDNKENWLHSQQREAEQQAALARLAGRLESMNDVEELTILLRSAGEYEERKLIRAAIRRVRAQEIEAATLAGRLCSRLPSSDSQEESRRQAAHRLDPGKVPEQEQQKQQTEVPEPTPTPSPTPEDTSQDVTTVTLLLRAPPGGAPSSPTSPDSSPTTASPEPLLEPAGAQCPVAEALDSSEPLPQPSGAPSPEPPLSPAPPSSQGQVISKPLPDPTEPSTTLGPARGSSNTKRADLTELQPCQCSVSVLSPRQPAPNREPAPLARSSQFQRTGSVRDRVRKFTSDSPVAARLQDGPRTALTSLTPTKLLGSSCIGTTPASSNSSSRGPSDTSSHKKQRELAHSLAQLQSCPREEGPGGRGLTPRSLENRAGGPKPCSEEPSTPLPVGIGTGEPGGSMKTTTFTIEIKDGRGQASAGRVLLPTGNQRAELTLGLRTPPTLLSTSSGGKSTITRVSSPGTVTRLGSVTHVTTFSHASPGNRGGCNFKMEPDPAEPPTATVEAANGTEQTRVDKAPEERGPLSADELMAIEDEGVLDKMLDQTTNFEERKLIRAALRELRQRKRDQRDREREQRLREARARPGESRSNTATETTTRHSQRAADGSAVSTVTKTERLVHSNDGTQTARTTTVESSFVRRSENGSSSSTTVQTKTFSSSSSSSSSKKMGSIFDREDQASPRPGSLAALEKRQAEKKKELMKAQSLPKTSASQARKAMIEKLEKEGSAGSPGTPRTAVQRSTSFGVPNANSIKQMLLDWCRAKTRGYEHVDIQNFSSSWSDGMAFCALVHNFFPEAFDYGQLSPQNRRQNFEMAFSSAEMLVDCVPLVEVEDMMIMGKKPDPKCVFTYVQSLYNHLRRHELRLRGKNV", "length": 921, "header": "tr|A0A9J7EZY0-1|A0A9J7J5Z4_CRIGR Computationally mapped isoform of Smoothelin isoform X4 OS=Cricetulus griseus OX=10029 GN=Smtn PE=3 SV=1 CANONICAL=A0A9J7J5Z4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J402-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J5Z4/entry#A0A9J7J402-1", "sequence": { "sequence": "MMADEALAGLDEGALRKLLEVTADLAERRRIRSAIRELQRQELEREEGALASKRFRAERQDNKENWLHSQQREAEQQAALARLAGRLESMNDVEELTILLRSAGEYEERKLIRAAIRRVRAQEIEAATLAGRLCSRLPSSDSQEESRRQAAHRLDPGKVPEQEQQKQQTEVPEPTPTPSPTPEDTSQDVTTVTLLLRAPPGGAPSSPTSPDSSPTTASPEPLLEPAGAQCPVAEALDSSEPLPQPSGAPSPEPPLSPAPPSSQGQVISKPLPDPTEPSTTLGPARGSSNTKRADLTELQPCQCSVSVLSPRQPAPNREPAPLARSSQFQRTGSVRDRVRKFTSDSPVAARLQDGPRTALTSLTPTKLLGSSCIGTTPASSNSSSRGPSDTSSHKKQRELAHSLAQLQSCPREEGPGGRGLTPRSLENRAGGPKPCSEEPSTPLPVGIGTGEPGGSMKTTTFTIEIKDGRGQASAGRVLLPTGNQRAELTLGLRTPPTLLSTSSGGKSTITRVSSPGTVTRLGSVTHVTTFSHASPGNRGGCNFKMEPDPAEPPTATVEAANGTEQTRVDKAPEERGPLSADELMAIEDEGVLDKMLDQTTNFEERKLIRAALRELRQRKRDQRDREREQRLREARARPGESRSNTATETTTRHSQRAADGSAVSTVTKTERLVHSNDGTQTARTTTVESSFVRRSENGSSSSTTVQTKTFSSSSSSSSSKKMGSIFDREDQASPRPGSLAALEKRQAEKKKELMKAQSLPKTSASQARKAMIEKLEKEGSAGPGTPRTAVQRSTSFGVPNANSIKQMLLDWCRAKTRGYEHVDIQNFSSSWSDGMAFCALVHNFFPEAFDYGQLSPQNRRQNFEMAFSSAEMLVDCVPLVEVEDMMIMGKKPDPKCVFTYVQSLYNHLRRHELRLRGKNV", "length": 920, "header": "tr|A0A9J7J402-1|A0A9J7J402_CRIGR Computationally mapped isoform of Smoothelin isoform X6 OS=Cricetulus griseus OX=10029 GN=Smtn PE=3 SV=1 CANONICAL=A0A9J7J5Z4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J5U5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J5Z4/entry#A0A9J7J5U5-1", "sequence": { "sequence": "MMADEALAGLDEGALRKLLEVTADLAERRRIRSAIRELQRQELEREEGALASKRFRAERQDNKENWLHSQQREAEQQAALARLAGRLESMNDVEELTILLRSAGEYEERKLIRAAIRRVRAQEIEAATLAGRLCSRLPSSDSQEESRRQAAHRLDPGKVPEQEQQKQQTEVPEPTPTPSPTPEDTSQDVTTVTLLLRAPPGGAPSSPTSPDSSPTTASPEPLLEPAGAQCPVAEALDSSEPLPQPSGAPSPEPPLSPAPPSSQGQVISKPLPDPTEPSTTLGPARGSSNTKRAEPAPLARSSQFQRTGSVRDRVRKFTSDSPVAARLQDGPRTALTSLTPTKLLGSSCIGTTPASSNSSSRGPSDTSSHKKQRELAHSLAQLQSCPREEGPGGRGLTPRSLENRAGGPKPCSEEPSTPLPVGIGTGEPGGSMKTTTFTIEIKDGRGQASAGRVLLPTGNQRAELTLGLRTPPTLLSTSSGGKSTITRVSSPGTVTRLGSVTHVTTFSHASPGNRGGCNFKMEPDPAEPPTATVEAANGTEQTRVDKAPEERGPLSADELMAIEDEGVLDKMLDQTTNFEERKLIRAALRELRQRKRDQRDREREQRLREARARPGESRSNTATETTTRHSQRAADGSAVSTVTKTERLVHSNDGTQTARTTTVESSFVRRSENGSSSSTTVQTKTFSSSSSSSSSKKMGSIFDREDQASPRPGSLAALEKRQAEKKKELMKAQSLPKTSASQARKAMIEKLEKEGSAGSPGTPRTAVQRSTSFGVPNANSIKQMLLDWCRAKTRGYEHVDIQNFSSSWSDGMAFCALVHNFFPEAFDYGQLSPQNRRQNFEMAFSSAEMLVDCVPLVEVEDMMIMGKKPDPKCVFTYVQSLYNHLRRHELRLRGKNV", "length": 897, "header": "tr|A0A9J7J5U5-1|A0A9J7J5U5_CRIGR Computationally mapped isoform of Smoothelin isoform X8 OS=Cricetulus griseus OX=10029 GN=Smtn PE=3 SV=1 CANONICAL=A0A9J7J5Z4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J5Z4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J5Z4/entry#A0A9J7J5Z4-1", "sequence": { "sequence": "MMADEALAGLDEGALRKLLEVTADLAERRRIRSAIRELQRQELEREEGALASKRFRAERQDNKENWLHSQQREAEQQAALARLAGRLESMNDVEELTILLRSAGEYEERKLIRAAIRRVRAQEIEAATLAGRLCSRLPSSDSQEESRRQAAHRLDPGKVPEQEQQKQQTEVPEPTPTPSPTPEDTSQDVTTVTLLLRAPPGGAPSSPTSPDSSPTTASPEPLLEPAGAQCPVAEALDSSEPLPQPSGAPSPEPPLSPAPPSSQGQVISKPLPDPTEPSTTLGPARGSSNTKRADLTELQPCQCSVSVLSPRQPAPNREPAPLARSSQFQRTGSVRDRVRKFTSDSPVAARLQDGPRTALTSLTPTKLLGSSCIGTTPASSNSSSRGPSDTSSHKKQRELAHSLAQLQSCPREEGPGGRGLTPRSLENRAGGPKPCSEEPSTPLPVGIGTGEPGGSMKTTTFTIEIKDGRGQASAGRVLLPTGNQRAELTLGLRTPPTLLSTSSGGKSTITRVSSPGTVTRLGSVTHVTTFSHASPGNRGGCNFKMEPDPAEPPTATVEAANGTEQTRVDKAPEERGPLSADELMAIEDEGVLDKMLDQTTNFEERKLIRAALRELRQRKRDQRDREREQRLREARARPGESRSNTATETTTRHSQRAADGSAVSTVTKTERLVHSNDGTQTARTTTVESSFVRRSENGSSSSTTVQTKTFSSSSSSSSSKKMGSIFDREDQASPRPGSLAALEKRQAEKKKELMKAQSLPKTSASQARKAMIEKLEKEGSAGSPGTPRTAVQRSTSFGVPNANSIKQMLLDWCRAKTRGYEHVDIQNFSSSWSDGMAFCALVHNFFPEAFDYGQLSPQNRRQNFEMAFSSAETHADCPQLLDTEDMVRLREPDWKMLVDCVPLVEVEDMMIMGKKPDPKCVFTYVQSLYNHLRRHELRLRGKNV", "length": 944, "header": "tr|A0A9J7J5Z4-1|A0A9J7J5Z4_CRIGR Isoform 1 of Smoothelin isoform X4 OS=Cricetulus griseus OX=10029 GN=Smtn PE=3 SV=1 CANONICAL=A0A9J7J5Z4-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 175, "start_aa": "Thr", "end_pos": 175, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr175", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 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Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035308687", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308687" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HDI5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDI5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Slc7a7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDI5", "locus": {} } ], "crossref": [ { "id": "A0A9J7HDI5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HDI5", "database": "AlphaFoldDB", "categories": [] }, { "id": "100768258", "url": "https://www.ncbi.nlm.nih.gov/gene/100768258", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002293", 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"UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EZH5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZH5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HDI5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDI5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HDI5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDI5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKLVLNSRSSCLHIPNAGFELPQVALKFSYPHPHRLLEMARRILCLLESTAAEVTPLVLLATTPHPSGLTAPSSLHLPKGLQTEGNASKLVKTFLLPTMVDSTKYEVAAQHEENASALGDRASPVAEQVKLKKEISLLNGVCLIVGNMIGSGIFVSPKGVLMYSASFGLSLVIWAVGGIFSVFGALCYAELGTTIKKSGASYAYILEAFGGFLAFIRLWTSLLIIEPTSQAVIAITFANYMVQPLFPSCGAPYAAGRLLAAACICLLTFVNCAYVKWGTLVQDIFTYAKVLALIAVIIAGIVTLGQGATTNFENSFEGSSFAMGDIALALYSALFSYSGWDTLNYVTEEIRNPERNLPLSIAISMPIVTIIYLLTNVAYYSVLDIKDILASEAVAVTFADRIFGIFNWTIPVAVALSCFGGLNASIVAASRLLFVGSREGHLPDAICMIHVERFTPVPSLLFNGILALVYLCVEDIFQLINYYSFSYWFFVGLSIVGQLYLRWKEPDRPRPLKLSLFFPIVFCLCTIFLVAVPLYSDTINSLIGIAIALSGLPFYFLIIRVPEHKRPLCLRRIVASTTRYLQILCMSVAAELDLEDEEMPKQQGRKSK", "length": 608, "header": "tr|A0A9J7HDI5-1|A0A9J7HDI5_CRIGR Isoform 1 of Y+L amino acid transporter 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Slc7a7 PE=3 SV=1 CANONICAL=A0A9J7HDI5-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MU35-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDI5/entry#A0A8C2MU35-1", "sequence": { "sequence": 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"MKLVLNSRSSCLHIPNAGFELPQVALKFSYPHPHRLLEMARRILCLLEGNASKLVKTFLLPTMVDSTKYEVAAQHEENASALGDRASPVAEQVKLKKEISLLNGVCLIVGNMIGSGIFVSPKGVLMYSASFGLSLVIWAVGGIFSVFGALCYAELGTTIKKSGASYAYILEAFGGFLAFIRLWTSLLIIEPTSQAVIAITFANYMVQPLFPSCGAPYAAGRLLAAACICLLTFVNCAYVKWGTLVQDIFTYAKVLALIAVIIAGIVTLGQGATTNFENSFEGSSFAMGDIALALYSALFSYSGWDTLNYVTEEIRNPERNLPLSIAISMPIVTIIYLLTNVAYYSVLDIKDILASEAVAVTFADRIFGIFNWTIPVAVALSCFGGLNASIVAASRLLFVGSREGHLPDAICMIHVERFTPVPSLLFNGILALVYLCVEDIFQLINYYSFSYWFFVGLSIVGQLYLRWKEPDRPRPLKLSLFFPIVFCLCTIFLVAVPLYSDTINSLIGIAIALSGLPFYFLIIRVPEHKRPLCLRRIVASTTRYLQILCMSVAAELDLEDEEMPKQQGRKSK", "length": 572, "header": "tr|A0A9J7EZH5-1|A0A9J7HDI5_CRIGR Computationally mapped isoform of Y+L amino acid transporter 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Slc7a7 PE=3 SV=1 CANONICAL=A0A9J7HDI5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HDI5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDI5/entry#A0A9J7HDI5-1", "sequence": { "sequence": "MKLVLNSRSSCLHIPNAGFELPQVALKFSYPHPHRLLEMARRILCLLESTAAEVTPLVLLATTPHPSGLTAPSSLHLPKGLQTEGNASKLVKTFLLPTMVDSTKYEVAAQHEENASALGDRASPVAEQVKLKKEISLLNGVCLIVGNMIGSGIFVSPKGVLMYSASFGLSLVIWAVGGIFSVFGALCYAELGTTIKKSGASYAYILEAFGGFLAFIRLWTSLLIIEPTSQAVIAITFANYMVQPLFPSCGAPYAAGRLLAAACICLLTFVNCAYVKWGTLVQDIFTYAKVLALIAVIIAGIVTLGQGATTNFENSFEGSSFAMGDIALALYSALFSYSGWDTLNYVTEEIRNPERNLPLSIAISMPIVTIIYLLTNVAYYSVLDIKDILASEAVAVTFADRIFGIFNWTIPVAVALSCFGGLNASIVAASRLLFVGSREGHLPDAICMIHVERFTPVPSLLFNGILALVYLCVEDIFQLINYYSFSYWFFVGLSIVGQLYLRWKEPDRPRPLKLSLFFPIVFCLCTIFLVAVPLYSDTINSLIGIAIALSGLPFYFLIIRVPEHKRPLCLRRIVASTTRYLQILCMSVAAELDLEDEEMPKQQGRKSK", "length": 608, "header": "tr|A0A9J7HDI5-1|A0A9J7HDI5_CRIGR Isoform 1 of Y+L amino acid transporter 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Slc7a7 PE=3 SV=1 CANONICAL=A0A9J7HDI5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EZH5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZH5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7EZH5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZH5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100768258", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768258", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "P38734-1", "protein_name": "Low-affinity methionine permease", "gene_name": "MUP3", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MEPLLFNSGKANPSQDVFIDVEVGDITTKYGSTNTGSFSSMDTVEAQAIKAETARFMEVPQGRHLGVFSTVVLFVSRIMGSGIFAVPSVILLNTGGNKLIYFAIWVFSAAIAFAGLYLFLEFGSWIPKSGGRKNFLERSFERPRLLISVVFSCYSVLTGYALTGSIVFGKYVLSAFGVTDDSWSKYVSISFIIFAVLIHGVSVRHGVFIQNALGGLKLIMIVLMCFAGLYTLFFYKSTGQVAWDLPVTQVEKDSLLSVSSIATAFISSFFCFSGWDTVHTVTSEIKNPVKTLKVSGPLSLIICFVCYTMMNVAYLKVLTYEEIVSAGPLVGSVLFTKLFGPRVGGKFIAFSIAISAASNILVVIYSISRVNQEIFKEGYLPFSIHMSKNWPFDAPLPSISLCGFITIAWILILPKEGESFNYLVSMDGYGNQFFLLLVAIGLFIWRFKHKNEVPEIRASTFGVLAIITLSLYMLMAPFFADPSLNRVGFLPPYQIMSLLVIVACFFFWLVKFVLLPKFFHYKLLPKITYLHDGLIVTEWVKKPCLC", "length": 546 }, "evidence": [ { "id": "A0A9J7HDI5", "url": "https://omabrowser.org/oma/group/A0A9J7HDI5/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q9R0S5-1", "protein_name": "Y+L amino acid transporter 1", "gene_name": "Slc7a7", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": 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"MVDSTEYEVASQPEVETSPLGDGASPGPEQVKLKKEISLLNGVCLIVGNMIGSGIFVSPKGVLIYSASFGLSLVIWAVGGLFSVFGALCYAELGTTIKKSGASYAYILEAFGGFLAFIRLWTSLLIIEPTSQAIIAITFANYMVQPLFPSCFAPYAASRLLAAACICLLTFINCAYVKWGTLVQDIFTYAKVLALIAVIVAGIVRLGQGASTHFENSFEGSSFAVGDIALALYSALFSYSGWDTLNYVTEEIKNPERNLPLSIGISMPIVTIIYILTNVAYYTVLDMRDILASDAVAVTFADQIFGIFNWIIPLSVALSCFGGLNASIVAASRLFFVGSREGHLPDAICMIHVERFTPVPSLLFNGIMALIYLCVEDIFQLINYYSFSYWFFVGLSIVGQLYLRWKEPDRPRPLKLSVFFPIVFCLCTIFLVAVPLYSDTINSLIGIAIALSGLPFYFLIIRVPEHKRPLYLRRIVGSATRYLQVLCMSVAAEMDLEDGGEMPKQRDPKSN", "length": 511 }, "evidence": [ { "id": "A0A9J7HDI5", "url": "https://omabrowser.org/oma/group/A0A9J7HDI5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9Z1K8-1", "protein_name": "Y+L amino acid transporter 1", "gene_name": "Slc7a7", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MVNSTKYEVAAQHEADDGSALGDGASPVAEQVKLKKEISLLNGVCLIVGNMIGSGIFVSPKGVLMYSASFGLSLVIWAVGGIFSVFGALCYAELGTTIKKSGASYAYILEAFGGFLAFIRLWTSLLIIEPTSQAVIAITFANYMVQPLFPSCGAPYAAGRLLAAACICLLTFINCAYVKWGTLVQDIFTYAKVLALIAVIIAGIVRLGQGATANFENSFEGSSFAMGDIALALYSALFSYSGWDTLNYVTEEIRNPERNLPLSIGISMPIVTIIYLLTNVAYYSVLDIKEILASDAVAVTFADQIFGVFNWIIPVAVAFSCFGGLNASIVAASRLLFVGSREGHLPDAICMVHVERFTPVPSLLFNGVLSLVYLCVEDIFQLINYYSFSYWFFVGLSIVGQLYLRWKDPDRPRPLKLSLFFPIIFCLCTIFLVAVPLYSDTINSLIGIGIALSGLPFYFFIIRVPEHKRPLFLRRIVASITRYLQILCMSVAAEMDLEDGELSKQDPKSK", "length": 510 }, "evidence": [ { "id": "A0A9J7HDI5", "url": "https://omabrowser.org/oma/group/A0A9J7HDI5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "L-amino acid transmembrane transporter activity", "id": "GO:0015179", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015179", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HDI5", "url": 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"GO:0015820", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015820", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HDI5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDI5" } ], "pmid": "" }, { "name": "L-arginine transmembrane transport", "id": "GO:1903826", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1903826", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HDI5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDI5" } ], "pmid": "" }, { "name": "amino acid import across plasma membrane", "id": "GO:0089718", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0089718", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HDI5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDI5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 114, "end_pos": 116, "annotation": "n_glycosylation_sequon" }, { "start_pos": 407, "end_pos": 409, "annotation": "n_glycosylation_sequon" }, { "start_pos": 423, "end_pos": 425, "annotation": 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"uniprot_id": "A0A9J7J4B3_CRIGR", "mass": { "chemical_mass": 44104.0, "monoisotopic_mass": 44104.0 }, "refseq": { "ac": "XP_027243656", "name": "ankyrin repeat domain-containing protein 10 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243656" }, "gene_names": [ { "name": "Ankrd10", "type": "recommended", "evidence": [ { "id": "A0A9J7J4B3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J4B3" } ] }, { "name": "Ankrd10", "type": "synonym", "evidence": [ { "id": "XP_027243656", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243656" } ] } ], "protein_names": [ { "name": "Ankyrin repeat domain-containing protein 10 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7J4B3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J4B3/entry#names_and_taxonomy" } ] }, { "name": "ankyrin repeat domain-containing protein 10 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027243656", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243656" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027243656", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243656" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J4B3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J4B3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ankrd10", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J4B3", "locus": {} } ], "crossref": [ { "id": "A0A9J7J4B3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7J4B3", "database": "AlphaFoldDB", "categories": [] }, { "id": "100766146", "url": "https://www.ncbi.nlm.nih.gov/gene/100766146", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100766146", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766146", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7EZL9", "url": "https://www.orthodb.org/?gene=A0A9J7EZL9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7J4B3", "url": "https://www.orthodb.org/?gene=A0A9J7J4B3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24203", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24203", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24203:SF14", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24203:SF14", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00023", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00023", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027243656", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243656", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7EZL9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZL9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7EZL9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7EZL9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J4B3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J4B3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J4B3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J4B3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J670", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J670", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J670-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J670-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSAVVGAGAEAGFSSEELLSLRFPLHRACRDGDLVTLCSLLPHTPRAHLAAEDSFYGWTPVHWAAHFGKLECLIQLIRAGASLNVSTTRYAQTPAHIAAFGGHPQCLVWLIQAGANINKPDCEGETPIHKAARSGSLECISALVGNGAHTDLRNASGLTAADIAQTQGFQECTQFLLSLQNRQMSRFCHNGTLSGAHENTLPNHISLGTNRKRCLEDSESLGVKKARTGVPSLDHTMPLSNGEAEDDADRMHVDREFAAVSDVKNSSSVLNTLTNGSVINGHLDFPCVTQLNGMENRSNPCLSGSNGISNGQPFSSGQGSVCANGTEEPEKTMGVNPEMCGSLHLNGSPSSCVASRPSWVGDGGENLHYGHYHGFGDTAESIPELSSVLEHSSCVRVEQRYDSAVLGSMQLHHGS", "length": 415, "header": "tr|A0A9J7J4B3-1|A0A9J7J4B3_CRIGR Isoform 1 of Ankyrin repeat domain-containing protein 10 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ankrd10 PE=4 SV=1 CANONICAL=A0A9J7J4B3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7EZL9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J4B3/entry#A0A9J7EZL9-1", "sequence": { "sequence": "MFSMASLLHTSILLSLRNASGLTAADIAQTQGFQECTQFLLSLQNRQMSRFCHNGTLSGAHENTLPNHISLGTNRKRCLEDSESLGVKKARTGVPSLDHTMPLSNGEAEDDADRMHVDREFAAVSDVKNSSSVLNTLTNGSVINGHLDFPCVTQLNGMENRSNPCLSGSNGISNGQPFSSGQGSVCANGTEEPEKTMGVNPEMCGSLHLNGSPSSCVASRPSWVGDGGENLHYGHYHGFGDTAESIPELSSVLEHSSCVRVEQRYDSAVLGSMQLHHGS", "length": 279, "header": "tr|A0A9J7EZL9-1|A0A9J7J4B3_CRIGR Computationally mapped isoform of Ankyrin repeat domain-containing protein 10 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ankrd10 PE=4 SV=1 CANONICAL=A0A9J7J4B3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J4B3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J4B3/entry#A0A9J7J4B3-1", "sequence": { "sequence": 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"MSRFCHNGTLSGAHENTLPNHISLGTNRKRCLEDSESLGVKKARTGVPSLDHTMPLSNGEAEDDADRMHVDREFAAVSDVKNSSSVLNTLTNGSVINGHLDFPCVTQLNGMENRSNPCLSGSNGISNGQPFSSGQGSVCANGTEEPEKTMGVNPEMCGSLHLNGSPSSCVASRPSWVGDGGENLHYGHYHGFGDTAESIPELSSVLEHSSCVRVEQRYDSAVLGSMQLHHGS", "length": 232, "header": "tr|A0A9J7J670-1|A0A9J7J670_CRIGR Computationally mapped isoform of Ankyrin repeat domain-containing protein 10 isoform X3 OS=Cricetulus griseus OX=10029 GN=Ankrd10 PE=4 SV=1 CANONICAL=A0A9J7J4B3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027244135", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244135" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J4N1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J4N1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Sowahc", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J4N1", "locus": {} } ], "crossref": [ { "id": "A0A9J7J4N1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7J4N1", "database": "AlphaFoldDB", "categories": [] }, { "id": "100762040", "url": "https://www.ncbi.nlm.nih.gov/gene/100762040", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002110", 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"database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25877", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25877", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027244135", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244135", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F070", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F070", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F070-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F070-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J4N1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J4N1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J4N1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J4N1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEAPLEPSTEAVVSFLAERGGRARHSELVQHFRDALGGPREQRTRAREHFKELVNAVATVRTDPADGTKFVHLKKKFHTEGFPPPTEASLPRDPPRIEVTQEPEVPDPPAEPCKDSQLQEEADPQLSLQLRDEASDPEPLRPAPSGAQGKDSPQEVQAVSSWPSVPGPSENLKLPPHGGGGGGGGGEEAEGASSLGGPSTPRSVRQNFRDLMMGSSPQLMRSVCPGDGSSGSFSVGGRSRGGGDSDSASLASSSAEEEGSGGGSVTLDPLEHAWMLSASEGKWDSLEGLLTCEPGLLSKRDFITGFTCLHWAAKHGRQELLAMLVNFASKHQLPVNINARSSGGYTALHLAAMHGHVEVVKLLVGAYDADVDIRDYSGKKASQYLSESIAEEIKNLVGAMEEEDGDSATGRGSGRWKLSKVLPSHLITYKLSQGAEDGAEHHHHHVAEGWTGGKAKDSGRKALGSSSGRLKPRLNKIRFRTQIIHTTPSFKDAEQTLEEEEEEEERSLKGYSSSFKLRPKSNVFG", "length": 525, "header": "tr|A0A9J7J4N1-1|A0A9J7J4N1_CRIGR Isoform 1 of Ankyrin repeat domain-containing protein SOWAHC isoform X2 OS=Cricetulus griseus OX=10029 GN=Sowahc PE=3 SV=1 CANONICAL=A0A9J7J4N1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F070-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J4N1/entry#A0A9J7F070-1", "sequence": { "sequence": 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Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F070", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F070" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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"sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7J7R7-1", "uniprot_ac": "A0A9J7J7R7", "uniprot_id": "A0A9J7J7R7_CRIGR", "mass": { "chemical_mass": 197139.0, "monoisotopic_mass": 197139.0 }, "refseq": { "ac": "XP_027248952", "name": "GON-4-like protein isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248952" }, "gene_names": [ { "name": "LOC100764952", "type": "recommended", "evidence": [ { "id": "A0A9J7J7R7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7R7" } ] }, { "name": "LOC100764952", "type": "synonym", "evidence": [ { "id": "XP_027248952", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248952" } ] } ], "protein_names": [ { "name": "GON-4-like protein isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027248952", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248952" }, { "id": "A0A9J7J7R7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7R7/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027248952", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248952" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J7R7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7R7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100764952", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7R7", "locus": {} } ], "crossref": [ { "id": "100764952", "url": "https://www.ncbi.nlm.nih.gov/gene/100764952", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR052435", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052435", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100764952", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764952", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7J7R7", "url": "https://www.orthodb.org/?gene=A0A9J7J7R7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16088", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16088", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16088:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16088:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_027248952", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248952", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F1T7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1T7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F1T7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1T7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F2Q4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2Q4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F2Q4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2Q4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F470", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F470", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F470-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F470-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F641", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F641", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F641-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F641-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F684", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F684", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F684-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F684-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F6T1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6T1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F6T1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6T1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F6X1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6X1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F6X1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6X1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F748", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F748", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F748-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F748-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H7I7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7I7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H7I7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H7I7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H9M4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9M4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H9M4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9M4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J7R7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7R7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J7R7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7R7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JB96", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JB96", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JB96-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JB96-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLPCKKRRATVTESVHQQDSQEGDDLDLESSVKPESVQLKDLASESLSWDQHHESAVCPEVDSSHDVENQLSVEDPSLRPKMLTQHGNPPVLEAVDGAIAQEIALPSLESSHSLTVHMDKERLQATASRKGKKIVFPPGLVTREDQGDHPVMEEPPSGEPGEEVMAEGGTKRKRDGKGQEQGTMAHDLNLDDMLDRTLEDGAKKHNLAAVNVRNILHQPPQFVDIHLEEDDSSDEEYQPDEEEEDETAEESLLESDVESTASSPRGVKRSRLRASSEVAETDEESGMLSEVEKVTTPAVRHISAEVVPMGPPPPPKPKQSRDSAFMEKLNAVDEELASSPVCMDSFQPMEDSLIAFRTRSKMPLKDVPLGQLELQAPDITVDMYNPTTANNEDWKLWLGGLLNDDVENEDEADDDDDPEYNFLEDLDEPDTEDFRTDRAVRITKKEVNGLMEELFETFQDEMGFSNMEEDGPEEEERVSESRPNFNTPQTLRFGEPLASWLNERNRTVKELLEHLKMKKSACKSQPEVERLKPQKEIVHQTLILDPAQRSRLQQQMQQHVQLLTQVYLLTTSNPNLSSEASTTRVFLKELGTFAENSIALHQQFNPNFQTLFQPCNWMGAMQLIEDFTHVSVDCSPQKTAKKTASEFPCLPKQVAWILATNKVFMYPELLPICSLKANNPRDKIVFTKAEDNLLALGLKHFEGTEFPKPLISKYLVTCKTAHQLTVRIKNLNQNRAPNNVIKFYKKTKQLPVLVRCCEEIQPHQWKPPIEKEEHQLPFWLKASLQSIQDELRNIAEGPAEGENVTPAPETSTDHPLEKASPELGTETRYPLLMPKGVVLKLKPGSKRFSRRAWRQKRPLAQKPLLIQPSPCVQPALNLGKMATWPIQSEVPPGNIVVQIPHLIQPTPVLQTLQGFPPVGVSREDCIESPAAALPAMPSGPEARTSFSLSESQSLLSSSSAPKIMLPSLAPSKFQKPFLRPKPMRRKGAKLSPCVKPAPIVHPTPVIFAVPATTVKVVSLGSGCNVIQPVNAAVAPNPQTIPITTLLVNPTPFPCQLNQPLVASSIPPLIVSGNSLTLPVPSIPEDNAHVNLDVTEGMSVLQNPDSTLKPQEPTSLCATVFSKEDPVPWHPSSGTESQETSSELSSCGWAIVKTESQEASSESSACVWTVVKTENQEASSESSACGWTVVKTENHEASSESSAYGWTVVKTESQEASSESSACGWTVVKTENQEASSESSPCGWTVVKTENQEASSESSACGWTVVKTENQEASSESSACGWTVVKTENQEASSESSACGWTVVKTENQEASSESSACGWTVVKTENQEASSESSACGWTVVKSERQEASSESSACGWTVVKTENQEASSESSACVWTVVKTESQEASSESSACGWTVVKTEKQETSSESSACGWTVVKTESQEASSESSACGWTVVKTESQAASSECSACGWTVVKTENQEASSESSASGWTGVKTEEDGLALGPFPQHLPESLNSTSKDLEEMVKLEAEDCVGEIPSSFPEQVFGDKVKEECSVELDSGCHQGTLSSSREMRRQAVMQREEPQPAKSLPVSQDSADEGSTSGDASKGWPKSTPSCMEQETVLSSPPGKPEDSANADGQSVGTPAGPDPGGEKDGPEDEEEEEFDELTQDEEDELSSASEESVLSVPELQETMEKLTWLASERSMSQEGESEEENSQEENSEPEEEEEEEAEGMEALQKEGDVNDEAVGDAAEKQPSTLASPKTAPQVETSVTPAEGKSMYSRRPDVTFVASTTHRMQQPVMLHIRPHPELPELLNSHHC", "length": 1800, "header": "tr|A0A9J7J7R7-1|A0A9J7J7R7_CRIGR Isoform 1 of GON-4-like protein isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100764952 PE=4 SV=1 CANONICAL=A0A9J7J7R7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F1T7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7R7/entry#A0A9J7F1T7-1", "sequence": { "sequence": "MLPCKKRRATVTESVHQQDSQEGDDLDLESSVKPESVQLKDLASESLSWDQHHESAVCPEVDSSHDVENQLSVEDPSLRPKMLTQHGNPPVLEAVDGAIAQEIALPSLESSHSLTVHMDKERLQATASRKGKKIVFPPGLVTREDQGDHPVMEEPPSGEPGEEVMAEGGTKRKRDGKGQEQGTMAHDLNLDDMLDRTLEDGAKKHNLAAVNPPQFVDIHLEEDDSSDEEYQPDEEEEDETAEESLLESDVESTASSPRGVKRSRLRASSEVAETDEESGMLSEVEKVTTPAVRHISAEVVPMGPPPPPKPKQSRDSAFMEKLNAVDEELASSPVCMDSFQPMEDSLIAFRTRSKMPLKDVPLGQLELQAPDITVDMYNPTTANNEDWKLWLGGLLNDDVENEDEADDDDDPEYNFLEDLDEPDTEDFRTDRAVRITKKEVNGLMEELFETFQDEMGFSNMEEDGPEEEERVSESRPNFNTPQTLRFGEPLASWLNERNRTVKELLEHLKMKKSACKSQPEVERLKPQKEIVHQTLILDPAQRSRLQQQMQQHVQLLTQVYLLTTSNPNLSSEASTTRVFLKELGTFAENSIALHQQFNPNFQTLFQPCNWMGAMQLIEDFTHVSVDCSPQKTAKKTASEFPCLPKQVAWILATNKVFMYPELLPICSLKANNPRDKIVFTKAEDNLLALGLKHFEGTEFPKPLISKYLVTCKTAHQLTVRIKNLNQNRAPNNVIKFYKKTKQLPVLVRCCEEIQPHQWKPPIEKEEHQLPFWLKASLQSIQDELRNIAEGPAEGENVTPAPETSTDHPLEKASPELGTETRYPLLMPKGVVLKLKPGSKRFSRRAWRQKRPLAQKPLLIQPSPCVQPALNLGKMATWPIQSEVPPGNIVVQIPHLIQPTPVLQTLQGFPPVGVSREDCIESPAAALPAMPSGPEARTSFSLSESQSLLSSSSAPKIMLPSLAPSKFQKPFLRPKPMRRKGAKLSPCVKPAPIVHPTPVIFAVPATTVKVVSLGSGCNVIQPVNAAVAPNPQTIPITTLLVNPTPFPCQLNQPLVASSIPPLIVSGNSLTLPVPSIPEDNAHVNLDVTEGMSVLQNPDSTLKPQEPTSLCATVFSKEDPVPWHPSSGTESQETSSELSSCGWAIVKTESQEASSESSACVWTVVKTENQEASSESSACGWTVVKTENHEASSESSAYGWTVVKTESQEASSESSACGWTVVKTENQEASSESSPCGWTVVKTENQEASSESSACGWTVVKTENQEASSESSACGWTVVKTENQEASSESSACGWTVVKTENQEASSESSACGWTVVKTENQEASSESSACGWTVVKSERQEASSESSACGWTVVKTENQEASSESSACVWTVVKTESQEASSESSACGWTVVKTEKQETSSESSACGWTVVKTESQEASSESSACGWTVVKTESQAASSECSACGWTVVKTENQEASSESSASGWTGVKTEEDGLALGPFPQHLPESLNSTSKDLEEMVKLEAEDCVGEIPSSFPEQVFGDKVKEECSVELDSGCHQGTLSSSREMRRQAVMQREEPQPAKSLPVSQDSADEGSTSGDASKGWPKSTPSCMEQETVLSSPPGKPEDSANADGQSVGTPAGPDPGGEKDGPEDEEEEEFDELTQDEEDELSSASEESVLSVPELQETMEKLTWLASERSMSQEGESEEENSQEENSEPEEEEEEEAEGMEALQKEGDVNDEAVGDAAEKQPSTLASPKTAPQVETSVTPAEGKSMYSRRPDVTFVASTTHRMQQPVMLHIRPHPELPELLNSHHC", "length": 1793, "header": "tr|A0A9J7F1T7-1|A0A9J7J7R7_CRIGR Computationally mapped isoform of GON-4-like protein isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100764952 PE=4 SV=1 CANONICAL=A0A9J7J7R7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F2Q4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7R7/entry#A0A9J7F2Q4-1", "sequence": { "sequence": "MLPCKKRRATVTESVHQQDSQEGDDLDLESSVKPESVQLKDLASESLSWDQHHESAVCPEVDSSHDVENQLSVEDPSLRPKMLTQHGNPPVLEAVDGAIAQEIALPSLESSHSLTVHMDKERLQATASRKGKKIVFPPGLVTREDQGDHPVMEEPPSGEPGEEVMAEGGTKRKRDGKGQEQGTMAHDLNLDDMLDRTLEDGAKKHNLAAVNVRNILHPPQFVDIHLEEDDSSDEEYQPDEEEEDETAEESLLESDVESTASSPRGVKRSRLRASSEVAETDEESGMLSEVEKVTTPAVRHISAEVVPMGPPPPPKPKQSRDSAFMEKLNAVDEELASSPVCMDSFQPMEDSLIAFRTRSKMPLKDVPLGQLELQAPDITVDMYNPTTANNEDWKLWLGGLLNDDVENEDEADDDDDPEYNFLEDLDEPDTEDFRTDRAVRITKKEVNGLMEELFETFQDEMGFSNMEEDGPEEEERVSESRPNFNTPQTLRFGEPLASWLNERNRTVKELLEHLKMKKSACKSQPEVERLKPQKEIVHQTLILDPAQRSRLQQQMQQHVQLLTQVYLLTTSNPNLSSEASTTRVFLKELGTFAENSIALHQQFNPNFQTLFQPCNWMGAMQLIEDFTHVSVDCSPQKTAKKTASEFPCLPKQVAWILATNKVFMYPELLPICSLKANNPRDKIVFTKAEDNLLALGLKHFEGTEFPKPLISKYLVTCKTAHQLTVRIKNLNQNRAPNNVIKFYKKTKQLPVLVRCCEEIQPHQWKPPIEKEEHQLPFWLKASLQSIQDELRNIAEGPAEGENVTPAPETSTDHPLEKASPELGTETRYPLLMPKGVVLKLKPGSKRFSRRAWRQKRPLAQKPLLIQPSPCVQPALNLGKMATWPIQSEVPPGNIVVQIPHLIQPTPVLQTLQGFPPVGVSREDCIESPAAALPAMPSGPEARTSFSLSESQSLLSSSSAPKIMLPSLAPSKFQKPFLRPKPMRRKGAKLSPCVKPAPIVHPTPVIFAVPATTVKVVSLGSGCNVIQPVNAAVAPNPQTIPITTLLVNPTPFPCQLNQPLVASSIPPLIVSGNSLTLPVPSIPEDNAHVNLDVTEGMSVLQNPDSTLKPQEPTSLCATVFSKEDPVPWHPSSGTESQETSSELSSCGWAIVKTESQEASSESSACVWTVVKTENQEASSESSACGWTVVKTENHEASSESSAYGWTVVKTESQEASSESSACGWTVVKTENQEASSESSPCGWTVVKTENQEASSESSACGWTVVKTENQEASSESSACGWTVVKTENQEASSESSACGWTVVKTENQEASSESSACGWTVVKTENQEASSESSACGWTVVKSERQEASSESSACGWTVVKTENQEASSESSACVWTVVKTESQEASSESSACGWTVVKTEKQETSSESSACGWTVVKTESQEASSESSACGWTVVKTESQAASSECSACGWTVVKTENQEASSESSASGWTGVKTEEDGLALGPFPQHLPESLNSTSKDLEEMVKLEAEDCVGEIPSSFPEQVFGDKVKEECSVELDSGCHQGTLSSSREMRRQAVMQREEPQPAKSLPVSQDSADEGSTSGDASKGWPKSTPSCMEQETVLSSPPGKPEDSANADGQSVGTPAGPDPGGEKDGPEDEEEEEFDELTQDEEDELSSASEESVLSVPELQETMEKLTWLASERSMSQEGESEEENSQEENSEPEEEEEEEAEGMEALQKEGDVNDEAVGDAAEKQPSTLASPKTAPQVETSVTPAEGKSMYSRRPDVTFVASTTHRMQQPVMLHIRPHPELPELLNSHHC", "length": 1799, "header": "tr|A0A9J7F2Q4-1|A0A9J7J7R7_CRIGR Computationally mapped isoform of GON-4-like protein isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100764952 PE=4 SV=1 CANONICAL=A0A9J7J7R7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F470-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7R7/entry#A0A9J7F470-1", "sequence": { "sequence": "MLPCKKRRATVTESVHQQDSQEGDDLDLESSVKPESVQLKDLASESLSWDQHHESAVCPEVDSSHDVENQLSVEDPSLRPKMLTQHGNPPVLEAVDGAIAQEIALPSLESSHSLTVHMDKERLQATASRKGKKIVFPPGLVTREDQGDHPVMEEPPSGEPGEEVMAEGGTKRKRDGKGQEQGTMAHDLNLDDMLDRTLEDGAKKHNLAAVNVRNILHQPPQFVDIHLEEDDSSDEEYQPDEEEEDETAEESLLESDVESTASSPRGVKRSRLRASSEVAETDEESGMLSEVEKVTTPAVRHISAEVVPMGPPPPPKPKQSRDSAFMEKLNAVDEELASSPVCMDSFQPMEDSLIAFRTRSKMPLKDVPLGQLELQAPDITVDMYNPTTANNEDWKLWLGGLLNDDVENEDEADDDDDPEYNFLEDLDEPDTEDFRTDRAVRITKKEVNGLMEELFETFQDEMGFSNMEEDGPEEEERVSESRPNFNTPQTLRFGEPLASWLNERNRTVKELLEHLKMKKSACKSQPEVERLKPQKEIVHQTLILDPAQRSRLQQQMQQHVQLLTQVYLLTTSNPNLSSEASTTRVFLKELGTFAENSIALHQQFNPNFQTLFQPCNWMGAMQLIEDFTHVSVDCSPQKTAKKTASEFPCLPKQVAWILATNKVFMYPELLPICSLKANNPRDKIVFTKAEDNLLALGLKHFEGTEFPKPLISKYLVTCKTAHQLTVRIKNLNQNRAPNNVIKFYKKTKQLPVLVRCCEEIQPHQWKPPIEKEEHQLPFWLKASLQSIQDELRNIAEGPAEGENVTPAPETSTDHPLEKASPELGTETRYPLLMPKGVVLKLKPGSKRFSRRAWRQKRPLAQKPLLIQPSPCVQPALNLGKMATWPIQSEVPPGNIVVQIPHLIQPTPVLQTLQGFPPVGVSREDCIESPAAALPAMPSGPEARTSFSLSESQSLLSSSSAPKIMLPSLAPSKFQKPFLRPKPMRRKGAKLSPCVKPAPIVHPTPVIFAVPATTVKVVSLGSGCNVIQPVNAAVAPNPQTIPITTLLVNPTPFPCQLNQPLVASSIPPLIVSGNSLTLPVPSIPEDNAHVNLDVTEGMSVLQNPDSTLKPQEPTSLCATVFSKEDPVPWHPSSGTESQETSSELSSCGWAIVKTESQEASSESSACVWTVVKTENQEASSESSACGWTVVKTENHEASSESSAYGWTVVKTESQEASSESSACGWTVVKTENQEASSESSPCGWTVVKTENQEASSESSACGWTVVKTENQEASSESSACGWTVVKTENQEASSESSACGWTVVKTENQEASSESSACGWTVVKTENQEASSESSACGWTVVKSERQEASSESSACGWTVVKTENQEASSESSACVWTVVKTESQEASSESSACGWTVVKTEKQETSSESSACGWTVVKTESQEASSESSACGWTVVKTESQAASSECSACGWTVVKTENQEASSESSASGWTGVKTEEDGLALGPFPQHLPESLNSTSKDLEEMVKLEAEDCVGEIPSSFPEQVFGDKVKEECSVELDSGCHQGTLSSSREMRRQAVMQREEPQPAKSLPVSQDSADEGSTSGDASKGWPKSTPSCMEQETVLSSPPGKPEDSANADGQSVGTPAGPDPGGEKDGPEDEEEEEFDELTQDEEDELSSASEESVLSVPELQKRSKEQ", "length": 1676, "header": "tr|A0A9J7F470-1|A0A9J7J7R7_CRIGR Computationally mapped isoform of GON-4-like protein isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100764952 PE=4 SV=1 CANONICAL=A0A9J7J7R7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F641-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7R7/entry#A0A9J7F641-1", "sequence": { "sequence": "MLPCKKRRATVTESVHQQDSQEGDDLDLESSVKPESVQLKDLASESLSWDQHHESAVCPEVDSSHDVENQLSVEDPSLRPKMLTQHGNPPVLEAVDGAIAQEIALPSLESSHSLTVHMDKERLQATASRKGKKIVFPPGLVTREDQGDHPVMEEPPSGEPGEEVMAEGGTKRKRDGKGQEQGTMAHDLNLDDMLDRTLEDGAKKHNLAAVNVRNILHQPPQFVDIHLEEDDSSDEEYQPDEEEEDETAEESLLESDVESTASSPRGVKRSRLRASSEVAETDEESGMLSEVEKVTTPAVRHISAEVVPMGPPPPPKPKQSRDSAFMEKLNAVDEELASSPVCMDSFQPMEDSLIAFRTRSKMPLKDVPLGQLELQAPDITVDMYNPTTANNEDWKLWLGGLLNDDVENEDEADDDDDPEYNFLEDLDEPDTEDFRTDRAVRITKKEVNGLMEELFETFQDEMGFSNMEEDGPEEEERVSESRPNFNTPQTLRFGEPLASWLNERNRTVKELLEHLKMKKSACKSQPEVERLKPQKEIVHQTLILDPAQRSRLQQQMQQHVQLLTQVYLLTTSNPNLSSEASTTRVFLKELGTFAENSIALHQQFNPNFQTLFQPCNWMGAMQLIEDFTHVSVDCSPQKTAKKTASEFPCLPKQVAWILATNKVFMYPELLPICSLKANNPRDKIVFTKAEDNLLALGLKHFEGTEFPKPLISKYLVTCKTAHQLTVRIKNLNQNRAPNNVIKFYKKTKQLPVLVRCCEEIQPHQWKPPIEKEEHQLPFWLKASLQSIQDELRNIAEGPAEGENVTPAPETSTDHPLEKASPELGTETRYPLLMPKGVVLKLKPGSKRFSRRAWRQKRPLAQKPLLIQPSPCVQPALNLGKMATWPIQSEVPPGNIVVQIPHLIQPTPVLQTLQGFPPVGVSREDCIESPAAALPAMPSGPEARTSFSLSESQSLLSSSSAPKIMLPSLAPSKFQKPFLRPKPMRRKGAKLSPCVKPAPIVHPTPVIFAVPATTVKVVSLGSGCNVIQPVNAAVAPNPQTIPITTLLVNPTPFPCQLNQPLVASSIPPLIVSGNSLTLPVPSIPEDNAHVNLDVTEGMSVLQNPDSTLKPQEPTSLCATVFSKEDPVPWHPSSGTESQETSSELSSCGWAIVKTESQEASSESSACVWTVVKTENQEASSESSACGWTVVKTENHEASSESSAYGWTVVKTESQEASSESSACGWTVVKTENQEASSESSPCGWTVVKTENQEASSESSACGWTVVKTENQEASSESSACGWTVVKTENQEASSESSACGWTVVKTENQEASSESSACGWTVVKTENQEASSESSACGWTVVKSERQEASSESSACGWTVVKTENQEASSESSACVWTVVKTESQEASSESSACGWTVVKTEKQETSSESSACGWTVVKTESQEASSESSACGWTVVKTESQAASSECSACGWTVVKTENQEASSESSASGWTGVKTEEDGLALGPFPQHLPESLNSTSKDLEEMVKLEAEDCVGEIPSSFPEQVFGDKVKEECSVELDSGCHQGTLSSSREMRRQAVMQREEPQPAKSLPVSQDSADEGSTSGDASKGWPKSTPSCMEQETVLSSPPGKPEDSANADGQSVGTPAGPDPGGEKDGPEDEEEEEFDELTQDEEDELSSASEESVLSVPELQKESRCIQEGRM", "length": 1681, "header": "tr|A0A9J7F641-1|A0A9J7J7R7_CRIGR Computationally mapped isoform of GON-4-like protein isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100764952 PE=4 SV=1 CANONICAL=A0A9J7J7R7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F684-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7R7/entry#A0A9J7F684-1", "sequence": { "sequence": "MLPCKKRRATVTESVHQQDSQEGDDLDLESSVKPESVQLKDLASESLSWDQHHESAVCPEVDSSHDVENQLSVEDPSLRPKMLTQHGNPPVLEAVDGAIAQEIALPSLESSHSLTVHMDKERLQATASRKGKKIVFPPGLVTREDQGDHPVMEEPPSGEPGEEVMAEGGTKRKRDGKGQEQGTMAHDLNLDDMLDRTLEDGAKKHNLAAVNQPPQFVDIHLEEDDSSDEEYQPDEEEEDETAEEVEKVTTPAVRHISAEVVPMGPPPPPKPKQSRDSAFMEKLNAVDEELASSPVCMDSFQPMEDSLIAFRTRSKMPLKDVPLGQLELQAPDITVDMYNPTTANNEDWKLWLGGLLNDDVENEDEADDDDDPEYNFLEDLDEPDTEDFRTDRAVRITKKEVNGLMEELFETFQDEMGFSNMEEDGPEEEERVSESRPNFNTPQTLRFGEPLASWLNERNRTVKELLEHLKMKKSACKSQPEVERLKPQKEIVHQTLILDPAQRSRLQQQMQQHVQLLTQVYLLTTSNPNLSSEASTTRVFLKELGTFAENSIALHQQFNPNFQTLFQPCNWMGAMQLIEDFTHVSVDCSPQKTAKKTASEFPCLPKQVAWILATNKVFMYPELLPICSLKANNPRDKIVFTKAEDNLLALGLKHFEGTEFPKPLISKYLVTCKTAHQLTVRIKNLNQNRAPNNVIKFYKKTKQLPVLVRCCEEIQPHQWKPPIEKEEHQLPFWLKASLQSIQDELRNIAEGPAEGENVTPAPETSTDHPLEKASPELGTETRYPLLMPKGVVLKLKPGSKRFSRRAWRQKRPLAQKPLLIQPSPCVQPALNLGKMATWPIQSEVPPGNIVVQIPHLIQPTPVLQTLQGFPPVGVSREDCIESPAAALPAMPSGPEARTSFSLSESQSLLSSSSAPKIMLPSLAPSKFQKPFLRPKPMRRKGAKLSPCVKPAPIVHPTPVIFAVPATTVKVVSLGSGCNVIQPVNAAVAPNPQTIPITTLLVNPTPFPCQLNQPLVASSIPPLIVSGNSLTLPVPSIPEDNAHVNLDVTEGMSVLQNPDSTLKPQEPTSLCATVFSKEDPVPWHPSSGTESQETSSELSSCGWAIVKTESQEASSESSACVWTVVKTENQEASSESSACGWTVVKTENHEASSESSAYGWTVVKTESQEASSESSACGWTVVKTENQEASSESSPCGWTVVKTENQEASSESSACGWTVVKTENQEASSESSACGWTVVKTENQEASSESSACGWTVVKTENQEASSESSACGWTVVKTENQEASSESSACGWTVVKSERQEASSESSACGWTVVKTENQEASSESSACVWTVVKTESQEASSESSACGWTVVKTEKQETSSESSACGWTVVKTESQEASSESSACGWTVVKTESQAASSECSACGWTVVKTENQEASSESSASGWTGVKTEEDGLALGPFPQHLPESLNSTSKDLEEMVKLEAEDCVGEIPSSFPEQVFGDKVKEECSVELDSGCHQGTLSSSREMRRQAVMQREEPQPAKSLPVSQDSADEGSTSGDASKGWPKSTPSCMEQETVLSSPPGKPEDSANADGQSVGTPAGPDPGGEKDGPEDEEEEEFDELTQDEEDELSSASEESVLSVPELQETMEKLTWLASERSMSQEGESEEENSQEENSEPEEEEEEEAEGMEALQKEGDVNDEAVGDAAEKQPSTLASPKTAPQVETSVTPAEGKSMYSRRPDVTFVASTTHRMQQPVMLHIRPHPELPELLNSHHC", "length": 1754, "header": "tr|A0A9J7F684-1|A0A9J7J7R7_CRIGR Computationally mapped isoform of GON-4-like protein isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100764952 PE=4 SV=1 CANONICAL=A0A9J7J7R7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F6T1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7R7/entry#A0A9J7F6T1-1", "sequence": { "sequence": "MLPCKKRRATVTESVHQQDSQEGDDLDLESSVKPESVQLKDLASESLSWDQHHESAVCPEVDSSHDVENQLSVEDPSLRPKMLTQHGNPPVLEAVDGAIAQEIALPSLESSHSLTVHMDKERLQATASRKGKKIVFPPGLVTREDQGDHPVMEEPPSGEPGEEVMAEGGTKRKRDGKGQEQGTMAHDLNLDDMLDRTLEDGAKKHNLAAVNQPPQFVDIHLEEDDSSDEEYQPDEEEEDETAEESLLESDVESTASSPRGVKRSRLRASSEVAETDEESGMLSEVEKVTTPAVRHISAEVVPMGPPPPPKPKQSRDSAFMEKLNAVDEELASSPVCMDSFQPMEDSLIAFRTRSKMPLKDVPLGQLELQAPDITVDMYNPTTANNEDWKLWLGGLLNDDVENEDEADDDDDPEYNFLEDLDEPDTEDFRTDRAVRITKKEVNGLMEELFETFQDEMGFSNMEEDGPEEEERVSESRPNFNTPQTLRFGEPLASWLNERNRTVKELLEHLKMKKSACKSQPEVERLKPQKEIVHQTLILDPAQRSRLQQQMQQHVQLLTQVYLLTTSNPNLSSEASTTRVFLKELGTFAENSIALHQQFNPNFQTLFQPCNWMGAMQLIEDFTHVSVDCSPQKTAKKTASEFPCLPKQVAWILATNKVFMYPELLPICSLKANNPRDKIVFTKAEDNLLALGLKHFEGTEFPKPLISKYLVTCKTAHQLTVRIKNLNQNRAPNNVIKFYKKTKQLPVLVRCCEEIQPHQWKPPIEKEEHQLPFWLKASLQSIQDELRNIAEGPAEGENVTPAPETSTDHPLEKASPELGTETRYPLLMPKGVVLKLKPGSKRFSRRAWRQKRPLAQKPLLIQPSPCVQPALNLGKMATWPIQSEVPPGNIVVQIPHLIQPTPVLQTLQGFPPVGVSREDCIESPAAALPAMPSGPEARTSFSLSESQSLLSSSSAPKIMLPSLAPSKFQKPFLRPKPMRRKGAKLSPCVKPAPIVHPTPVIFAVPATTVKVVSLGSGCNVIQPVNAAVAPNPQTIPITTLLVNPTPFPCQLNQPLVASSIPPLIVSGNSLTLPVPSIPEDNAHVNLDVTEGMSVLQNPDSTLKPQEPTSLCATVFSKEDPVPWHPSSGTESQETSSELSSCGWAIVKTESQEASSESSACVWTVVKTENQEASSESSACGWTVVKTENHEASSESSAYGWTVVKTESQEASSESSACGWTVVKTENQEASSESSPCGWTVVKTENQEASSESSACGWTVVKTENQEASSESSACGWTVVKTENQEASSESSACGWTVVKTENQEASSESSACGWTVVKTENQEASSESSACGWTVVKSERQEASSESSACGWTVVKTENQEASSESSACVWTVVKTESQEASSESSACGWTVVKTEKQETSSESSACGWTVVKTESQEASSESSACGWTVVKTESQAASSECSACGWTVVKTENQEASSESSASGWTGVKTEEDGLALGPFPQHLPESLNSTSKDLEEMVKLEAEDCVGEIPSSFPEQVFGDKVKEECSVELDSGCHQGTLSSSREMRRQAVMQREEPQPAKSLPVSQDSADEGSTSGDASKGWPKSTPSCMEQETVLSSPPGKPEDSANADGQSVGTPAGPDPGGEKDGPEDEEEEEFDELTQDEEDELSSASEESVLSVPELQETMEKLTWLASERSMSQEGESEEENSQEENSEPEEEEEEEAEGMEALQKEGDVNDEAVGDAAEKQPSTLASPKTAPQVETSVTPAEGKSMYSRRPDVTFVASTTHRMQQPVMLHIRPHPELPELLNSHHC", "length": 1794, "header": "tr|A0A9J7F6T1-1|A0A9J7J7R7_CRIGR Computationally mapped isoform of GON-4-like protein isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100764952 PE=4 SV=1 CANONICAL=A0A9J7J7R7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F6X1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7R7/entry#A0A9J7F6X1-1", "sequence": { "sequence": "MLPCKKRRATVTESVHQQDSQEGDDLDLESSVKPESVQLKDLASESLSWDQHHESAVCPEVDSSHDVENQLSVEDPSLRPKMLTQHGNPPVLEAVDGAIAQEIALPSLESSHSLTVHMDKERLQATASRKGKKIVFPPGLVTREDQGDHPVMEEPPSGEPGEEVMAEGGTKRKRDGKGQEQGTMAHDLNLDDMLDRTLEDGAKKHNLAAVNVRNILHQPPQFVDIHLEEDDSSDEEYQPDEEEEDETAEESLLESDVESTASSPRGVKRSRLRASSEVAETDEESGMLSEVEKVTTPAVRHISAEVVPMGPPPPPKPKQSRDSAFMEKLNAVDEELASSPVCMDSFQPMEDSLIAFRTRSKMPLKDVPLGQLELQAPDITVDMYNPTTANNEDWKLWLGGLLNDDVENEDEADDDDDPEYNFLEDLDEPDTEDFRTDRAVRITKKEVNGLMEELFETFQDEMGFSNMEEDGPEEEERVSESRPNFNTPQTLRFGEPLASWLNERNRTVKELLEHLKMKKSACKSQPEVERLKPQKEIVHQTLILDPAQRSRLQQQMQQHVQLLTQVYLLTTSNPNLSSEASTTRVFLKELGTFAENSIALHQQFNPNFQTLFQPCNWMGAMQLIEDFTHVSVDCSPQKTAKKTASEFPCLPKQVAWILATNKVFMYPELLPICSLKANNPRDKIVFTKAEDNLLALGLKHFEGTEFPKPLISKYLVTCKTAHQLTVRIKNLNQNRAPNNVIKFYKKTKQLPVLVRCCEEIQPHQWKPPIEKEEHQLPFWLKASLQSIQDELRNIAEGPAEGENVTPAPETSTDHPLEKASPELGTETRYPLLMPKGVVLKLKPGSKRFSRRAWRQKRPLAQKPLLIQPSPCVQPALNLGKMATWPIQSEVPPGNIVVQIPHLIQPTPVLQTLQGFPPVGVSREDCIESPAAALPAMPSGPEARTSFSLSESQSLLSSSSAPKIMLPSLAPSKFQKPFLRPKPMRRKGAKLSPCVKPAPIVHPTPVIFAVPATTVKVVSLGSGCNVIQPVNAAVAPNPQTIPITTLLVNPTPFPCQLNQPLVASSIPPLIVSGNSLTLPVPSIPEDNAHVNLDVTEGMSVLQNPDSTLKPQEPTSLCATVFSKEDPVPWHPSSGTESQETSSELSSCGWAIVKTESQEASSESSACVWTVVKTENQEASSESSACGWTVVKTENHEASSESSAYGWTVVKTESQEASSESSACGWTVVKTENQEASSESSPCGWTVVKTENQEASSESSACGWTVVKTENQEASSESSACGWTVVKTENQEASSESSACGWTVVKTENQEASSESSACGWTVVKTENQEASSESSACGWTVVKSERQEASSESSACGWTVVKTENQEASSESSACVWTVVKTESQEASSESSACGWTVVKTEKQETSSESSACGWTVVKTESQEASSESSACGWTVVKTESQAASSECSACGWTVVKTENQEASSESSASGWTGVKTEEDGLALGPFPQHLPESLNSTSKDLEEMVKLEAEDCVGEIPSSFPEQVFGDKVKEECSVELDSGCHQGTLSSSREMRRQAVMQREEPQPAKSLPVSQDSADEGSTSGDASKGWPKSTPSCMEQETVLSSPPGKPEDSANADGQSVGTPAGPDPGGEKDGPEDEEEEEFDELTQDEEDELSSASEESVLSVPELQETMEKLTWLASERSMSQEGESEEENSQEENSEPEEEEEEEAEGMEALQKEGDVNDEAVGDAAEKQPSTLASPKTAPQVETSVTPAETTAVIDVFERT", "length": 1767, "header": "tr|A0A9J7F6X1-1|A0A9J7J7R7_CRIGR Computationally mapped isoform of GON-4-like protein isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100764952 PE=4 SV=1 CANONICAL=A0A9J7J7R7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F748-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7R7/entry#A0A9J7F748-1", "sequence": { "sequence": "MLPCKKRRATVTESVHQQDSQEGDDLDLESSVKPESVQLKDLASESLSWDQHHESAVCPEVDSSHDVENQLSVEDPSLRPKMLTQHGNPPVLEAVDGAIAQEIALPSLESSHSLTVHMDKERLQATASRKGKKIVFPPGLVTREDQGDHPVMEEPPSGEPGEEVMAEGGTKRKRDGKGQEQGTMAHDLNLDDMLDRTLEDGAKKHNLAAVNVRNILHQPPQFVDIHLEEDDSSDEEYQPDEEEEDETAEESLLESDVESTASSPRGVKRSRLRASSEVAETDEESGMLSEVEKVTTPAVRHISAEVVPMGPPPPPKPKQSRDSAFMEKLNAVDEELASSPVCMDSFQPMEDSLIAFRTRSKMPLKDVPLGQLELQAPDITVDMYNPTTANNEDWKLWLGGLLNDDVENEDEADDDDDPEYNFLEDLDEPDTEDFRTDRAVRITKKEVNGLMEELFETFQDEMGFSNMEEDGPEEEERVSESRPNFNTPQTLRFGEPLASWLNERNRTVKELLEHLKMKKSACKSQPEVERLKPQKEIVHQTLILDPAQRSRLQQQMQQHVQLLTQVYLLTTSNPNLSSEASTTRVFLKELGTFAENSIALHQQFNPNFQTLFQPCNWMGAMQLIEDFTHVSVDCSPQKTAKKTASEFPCLPKQVAWILATNKVFMYPELLPICSLKANNPRDKIVFTKAEDNLLALGLKHFEGTEFPKPLISKYLVTCKTAHQLTVRIKNLNQNRAPNNVIKFYKKTKQLPVLVRCCEEIQPHQWKPPIEKEEHQLPFWLKASLQSIQDELRNIAEGPAEGENVTPAPETSTDHPLEKASPELGTETRYPLLMPKGVVLKLKPGSKRFSRRAWRQKRPLAQKPLLIQPSPCVQPALNLGKMATWPIQSEVPPGNIVVQIPHLIQPTPVLQTLQGFPPVGVSREDCIESPAAALPAMPSGPEARTSFSLSESQSLLSSSSAPKIMLPSLAPSKFQKPFLRPKPMRRKGAKLSPCVKPAPIVHPTPVIFAVPATTVKVVSLGSGCNVIQPVNAAVAPNPQTIPITTLLVNPTPFPCQLNQPLVASSIPPLIVSGNSLTLPVPSIPEDNAHVNLDVTEGMSVLQNPDSTLKPQEPTSLCATVFSKEDPVPWHPSSGTESQETSSELSSCGWAIVKTESQEASSESSACVWTVVKTENQEASSESSACGWTVVKTENHEASSESSAYGWTVVKTESQEASSESSACGWTVVKTENQEASSESSPCGWTVVKTENQEASSESSACGWTVVKTENQEASSESSACGWTVVKTENQEASSESSACGWTVVKTENQEASSESSACGWTVVKTENQEASSESSACGWTVVKSERQEASSESSACGWTVVKTENQEASSESSACVWTVVKTESQEASSESSACGWTVVKTEKQETSSESSACGWTVVKTESQEASSESSACGWTVVKTESQAASSECSACGWTVVKTENQEASSESSASGWTGVKTEEDGLALGPFPQHLPESLNSTSKDLEEMVKLEAEDCVGEIPSSFPEQVFGDKVKEECSVELDSGCHQGTLSSSREMRRQAVMQREEPQPAKSLPVSQDSADEGSTSGDASKGWPKSTPSCMEQETVLSSPPGKPEDSANADGQSVGTPAGPDPGGEKDGPEDEEEEEFDELTQDEEDELSSASEESVLSVPELQKQLL", "length": 1674, "header": "tr|A0A9J7F748-1|A0A9J7J7R7_CRIGR Computationally mapped isoform of GON-4-like protein isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100764952 PE=4 SV=1 CANONICAL=A0A9J7J7R7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H7I7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7R7/entry#A0A9J7H7I7-1", "sequence": { "sequence": "MLPCKKRRATVTESVHQQDSQEGDDLDLESSVKPESVQLKDLASESLSWDQHHESAVCPEVDSSHDVENQLSVEDPSLRPKMLTQHGNPPVLEAVDGAIAQEIALPSLESSHSLTVHMDKERLQATASRKGKKIVFPPGLVTREDQGDHPVMEEPPSGEPGEEVMAEGGTKRKRDGKGQEQGTMAHDLNLDDMLDRTLEDGAKKHNLAAVNVRNILHPPQFVDIHLEEDDSSDEEYQPDEEEEDETAEEVEKVTTPAVRHISAEVVPMGPPPPPKPKQSRDSAFMEKLNAVDEELASSPVCMDSFQPMEDSLIAFRTRSKMPLKDVPLGQLELQAPDITVDMYNPTTANNEDWKLWLGGLLNDDVENEDEADDDDDPEYNFLEDLDEPDTEDFRTDRAVRITKKEVNGLMEELFETFQDEMGFSNMEEDGPEEEERVSESRPNFNTPQTLRFGEPLASWLNERNRTVKELLEHLKMKKSACKSQPEVERLKPQKEIVHQTLILDPAQRSRLQQQMQQHVQLLTQVYLLTTSNPNLSSEASTTRVFLKELGTFAENSIALHQQFNPNFQTLFQPCNWMGAMQLIEDFTHVSVDCSPQKTAKKTASEFPCLPKQVAWILATNKVFMYPELLPICSLKANNPRDKIVFTKAEDNLLALGLKHFEGTEFPKPLISKYLVTCKTAHQLTVRIKNLNQNRAPNNVIKFYKKTKQLPVLVRCCEEIQPHQWKPPIEKEEHQLPFWLKASLQSIQDELRNIAEGPAEGENVTPAPETSTDHPLEKASPELGTETRYPLLMPKGVVLKLKPGSKRFSRRAWRQKRPLAQKPLLIQPSPCVQPALNLGKMATWPIQSEVPPGNIVVQIPHLIQPTPVLQTLQGFPPVGVSREDCIESPAAALPAMPSGPEARTSFSLSESQSLLSSSSAPKIMLPSLAPSKFQKPFLRPKPMRRKGAKLSPCVKPAPIVHPTPVIFAVPATTVKVVSLGSGCNVIQPVNAAVAPNPQTIPITTLLVNPTPFPCQLNQPLVASSIPPLIVSGNSLTLPVPSIPEDNAHVNLDVTEGMSVLQNPDSTLKPQEPTSLCATVFSKEDPVPWHPSSGTESQETSSELSSCGWAIVKTESQEASSESSACVWTVVKTENQEASSESSACGWTVVKTENHEASSESSAYGWTVVKTESQEASSESSACGWTVVKTENQEASSESSPCGWTVVKTENQEASSESSACGWTVVKTENQEASSESSACGWTVVKTENQEASSESSACGWTVVKTENQEASSESSACGWTVVKTENQEASSESSACGWTVVKSERQEASSESSACGWTVVKTENQEASSESSACVWTVVKTESQEASSESSACGWTVVKTEKQETSSESSACGWTVVKTESQEASSESSACGWTVVKTESQAASSECSACGWTVVKTENQEASSESSASGWTGVKTEEDGLALGPFPQHLPESLNSTSKDLEEMVKLEAEDCVGEIPSSFPEQVFGDKVKEECSVELDSGCHQGTLSSSREMRRQAVMQREEPQPAKSLPVSQDSADEGSTSGDASKGWPKSTPSCMEQETVLSSPPGKPEDSANADGQSVGTPAGPDPGGEKDGPEDEEEEEFDELTQDEEDELSSASEESVLSVPELQETMEKLTWLASERSMSQEGESEEENSQEENSEPEEEEEEEAEGMEALQKEGDVNDEAVGDAAEKQPSTLASPKTAPQVETSVTPAEGKSMYSRRPDVTFVASTTHRMQQPVMLHIRPHPELPELLNSHHC", "length": 1759, "header": "tr|A0A9J7H7I7-1|A0A9J7J7R7_CRIGR Computationally mapped isoform of GON-4-like protein isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100764952 PE=4 SV=1 CANONICAL=A0A9J7J7R7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H9M4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7R7/entry#A0A9J7H9M4-1", "sequence": { "sequence": "MLPCKKRRATVTESVHQQDSQEGDDLDLESSVKPESVQLKDLASESLSWDQHHESAVCPEVDSSHDVENQLSVEDPSLRPKMLTQHGNPPVLEAVDGAIAQEIALPSLESSHSLTVHMDKERLQATASRKGKKIVFPPGLVTREDQGDHPVMEEPPSGEPGEEVMAEGGTKRKRDGKGQEQGTMAHDLNLDDMLDRTLEDGAKKHNLAAVNVRNILHQPPQFVDIHLEEDDSSDEEYQPDEEEEDETAEESLLESDVESTASSPRGVKRSRLRASSEVAETDEESGMLSEVEKVTTPAVRHISAEVVPMGPPPPPKPKQSRDSAFMEKLNAVDEELASSPVCMDSFQPMEDSLIAFRTRSKMPLKDVPLGQLELQAPDITVDMYNPTTANNEDWKLWLGGLLNDDVENEDEADDDDDPEYNFLEDLDEPDTEDFRTDRAVRITKKEVNGLMEELFETFQDEMGFSNMEEDGPEEEERVSESRPNFNTPQTLRFGEPLASWLNERNRTVKELLEHLKMKKSACKSQPEVERLKPQKEIVHQTLILDPAQRSRLQQQMQQHVQLLTQVYLLTTSNPNLSSEASTTRVFLKELGTFAENSIALHQQFNPNFQTLFQPCNWMGAMQLIEDFTHVSVDCSPQKTAKKTASEFPCLPKQVAWILATNKVFMYPELLPICSLKANNPRDKIVFTKAEDNLLALGLKHFEGTEFPKPLISKYLVTCKTAHQLTVRIKNLNQNRAPNNVIKFYKKTKQLPVLVRCCEEIQPHQWKPPIEKEEHQLPFWLKASLQSIQDELRNIAEGPAEGENVTPAPETSTDHPLEKASPELGTETRYPLLMPKGVVLKLKPGSKRFSRRAWRQKRPLAQKPLLIQPSPCVQPALNLGKMATWPIQSEVPPGNIVVQIPHLIQPTPVLQTLQGFPPVGVSREDCIESPAAALPAMPSGPEARTSFSLSESQSLLSSSSAPKIMLPSLAPSKFQKPFLRPKPMRRKGAKLSPCVKPAPIVHPTPVIFAVPATTVKVVSLGSGCNVIQPVNAAVAPNPQTIPITTLLVNPTPFPCQLNQPLVASSIPPLIVSGNSLTLPVPSIPEDNAHVNLDVTEGMSVLQNPDSTLKPQEPTSLCATVFSKEDPVPWHPSSGTESQETSSELSSCGWAIVKTESQEASSESSACVWTVVKTENQEASSESSACGWTVVKTENHEASSESSAYGWTVVKTESQEASSESSACGWTVVKTENQEASSESSPCGWTVVKTENQEASSESSACGWTVVKTENQEASSESSACGWTVVKTENQEASSESSACGWTVVKTENQEASSESSACGWTVVKTENQEASSESSACGWTVVKSERQEASSESSACGWTVVKTENQEASSESSACVWTVVKTESQEASSESSACGWTVVKTEKQETSSESSACGWTVVKTESQEASSESSACGWTVVKTESQAASSECSACGWTVVKTENQEASSESSASGWTGVKTEEDGLALGPFPQHLPESLNSTSKDLEEMVKLEAEDCVGEIPSSFPEQVFGDKVKEECSVELDSGCHQGTLSSSREMRRQAVMQREEPQPAKSLPVSQDSADEGSTSGDASKGWPKSTPSCMEQETVLSSPPGKPEDSANADGQSVGTPAGPDPGGEKDGPEDEEEEEFDELTQDEEDELSSASEESVLSVPELQETMEKLTWLASERSMSQEGESEEENSQEENSEPEEEEEEEAEGMEALQKEGDVNDEAVGDAAEKQPSTLASPKTAPQVETSVTPAGAPGML", "length": 1761, "header": "tr|A0A9J7H9M4-1|A0A9J7J7R7_CRIGR Computationally mapped isoform of GON-4-like protein isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100764952 PE=4 SV=1 CANONICAL=A0A9J7J7R7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J7R7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7R7/entry#A0A9J7J7R7-1", "sequence": { "sequence": "MLPCKKRRATVTESVHQQDSQEGDDLDLESSVKPESVQLKDLASESLSWDQHHESAVCPEVDSSHDVENQLSVEDPSLRPKMLTQHGNPPVLEAVDGAIAQEIALPSLESSHSLTVHMDKERLQATASRKGKKIVFPPGLVTREDQGDHPVMEEPPSGEPGEEVMAEGGTKRKRDGKGQEQGTMAHDLNLDDMLDRTLEDGAKKHNLAAVNVRNILHQPPQFVDIHLEEDDSSDEEYQPDEEEEDETAEESLLESDVESTASSPRGVKRSRLRASSEVAETDEESGMLSEVEKVTTPAVRHISAEVVPMGPPPPPKPKQSRDSAFMEKLNAVDEELASSPVCMDSFQPMEDSLIAFRTRSKMPLKDVPLGQLELQAPDITVDMYNPTTANNEDWKLWLGGLLNDDVENEDEADDDDDPEYNFLEDLDEPDTEDFRTDRAVRITKKEVNGLMEELFETFQDEMGFSNMEEDGPEEEERVSESRPNFNTPQTLRFGEPLASWLNERNRTVKELLEHLKMKKSACKSQPEVERLKPQKEIVHQTLILDPAQRSRLQQQMQQHVQLLTQVYLLTTSNPNLSSEASTTRVFLKELGTFAENSIALHQQFNPNFQTLFQPCNWMGAMQLIEDFTHVSVDCSPQKTAKKTASEFPCLPKQVAWILATNKVFMYPELLPICSLKANNPRDKIVFTKAEDNLLALGLKHFEGTEFPKPLISKYLVTCKTAHQLTVRIKNLNQNRAPNNVIKFYKKTKQLPVLVRCCEEIQPHQWKPPIEKEEHQLPFWLKASLQSIQDELRNIAEGPAEGENVTPAPETSTDHPLEKASPELGTETRYPLLMPKGVVLKLKPGSKRFSRRAWRQKRPLAQKPLLIQPSPCVQPALNLGKMATWPIQSEVPPGNIVVQIPHLIQPTPVLQTLQGFPPVGVSREDCIESPAAALPAMPSGPEARTSFSLSESQSLLSSSSAPKIMLPSLAPSKFQKPFLRPKPMRRKGAKLSPCVKPAPIVHPTPVIFAVPATTVKVVSLGSGCNVIQPVNAAVAPNPQTIPITTLLVNPTPFPCQLNQPLVASSIPPLIVSGNSLTLPVPSIPEDNAHVNLDVTEGMSVLQNPDSTLKPQEPTSLCATVFSKEDPVPWHPSSGTESQETSSELSSCGWAIVKTESQEASSESSACVWTVVKTENQEASSESSACGWTVVKTENHEASSESSAYGWTVVKTESQEASSESSACGWTVVKTENQEASSESSPCGWTVVKTENQEASSESSACGWTVVKTENQEASSESSACGWTVVKTENQEASSESSACGWTVVKTENQEASSESSACGWTVVKTENQEASSESSACGWTVVKSERQEASSESSACGWTVVKTENQEASSESSACVWTVVKTESQEASSESSACGWTVVKTEKQETSSESSACGWTVVKTESQEASSESSACGWTVVKTESQAASSECSACGWTVVKTENQEASSESSASGWTGVKTEEDGLALGPFPQHLPESLNSTSKDLEEMVKLEAEDCVGEIPSSFPEQVFGDKVKEECSVELDSGCHQGTLSSSREMRRQAVMQREEPQPAKSLPVSQDSADEGSTSGDASKGWPKSTPSCMEQETVLSSPPGKPEDSANADGQSVGTPAGPDPGGEKDGPEDEEEEEFDELTQDEEDELSSASEESVLSVPELQETMEKLTWLASERSMSQEGESEEENSQEENSEPEEEEEEEAEGMEALQKEGDVNDEAVGDAAEKQPSTLASPKTAPQVETSVTPAEGKSMYSRRPDVTFVASTTHRMQQPVMLHIRPHPELPELLNSHHC", "length": 1800, "header": "tr|A0A9J7J7R7-1|A0A9J7J7R7_CRIGR Isoform 1 of GON-4-like protein isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100764952 PE=4 SV=1 CANONICAL=A0A9J7J7R7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JB96-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7R7/entry#A0A9J7JB96-1", "sequence": { "sequence": "MLPCKKRRATVTESVHQQDSQEGDDLDLESSVKPESVQLKDLASESLSWDQHHESAVCPEVDSSHDVENQLSVEDPSLRPKMLTQHGNPPVLEAVDGAIAQEIALPSLESSHSLTVHMDKERLQATASRKGKKIVFPPGLVTREDQGDHPVMEEPPSGEPGEEVMAEGGTKRKRDGKGQEQGTMAHDLNLDDMLDRTLEDGAKKHNLAAVNVRNILHQPPQFVDIHLEEDDSSDEEYQPDEEEEDETAEEVEKVTTPAVRHISAEVVPMGPPPPPKPKQSRDSAFMEKLNAVDEELASSPVCMDSFQPMEDSLIAFRTRSKMPLKDVPLGQLELQAPDITVDMYNPTTANNEDWKLWLGGLLNDDVENEDEADDDDDPEYNFLEDLDEPDTEDFRTDRAVRITKKEVNGLMEELFETFQDEMGFSNMEEDGPEEEERVSESRPNFNTPQTLRFGEPLASWLNERNRTVKELLEHLKMKKSACKSQPEVERLKPQKEIVHQTLILDPAQRSRLQQQMQQHVQLLTQVYLLTTSNPNLSSEASTTRVFLKELGTFAENSIALHQQFNPNFQTLFQPCNWMGAMQLIEDFTHVSVDCSPQKTAKKTASEFPCLPKQVAWILATNKVFMYPELLPICSLKANNPRDKIVFTKAEDNLLALGLKHFEGTEFPKPLISKYLVTCKTAHQLTVRIKNLNQNRAPNNVIKFYKKTKQLPVLVRCCEEIQPHQWKPPIEKEEHQLPFWLKASLQSIQDELRNIAEGPAEGENVTPAPETSTDHPLEKASPELGTETRYPLLMPKGVVLKLKPGSKRFSRRAWRQKRPLAQKPLLIQPSPCVQPALNLGKMATWPIQSEVPPGNIVVQIPHLIQPTPVLQTLQGFPPVGVSREDCIESPAAALPAMPSGPEARTSFSLSESQSLLSSSSAPKIMLPSLAPSKFQKPFLRPKPMRRKGAKLSPCVKPAPIVHPTPVIFAVPATTVKVVSLGSGCNVIQPVNAAVAPNPQTIPITTLLVNPTPFPCQLNQPLVASSIPPLIVSGNSLTLPVPSIPEDNAHVNLDVTEGMSVLQNPDSTLKPQEPTSLCATVFSKEDPVPWHPSSGTESQETSSELSSCGWAIVKTESQEASSESSACVWTVVKTENQEASSESSACGWTVVKTENHEASSESSAYGWTVVKTESQEASSESSACGWTVVKTENQEASSESSPCGWTVVKTENQEASSESSACGWTVVKTENQEASSESSACGWTVVKTENQEASSESSACGWTVVKTENQEASSESSACGWTVVKTENQEASSESSACGWTVVKSERQEASSESSACGWTVVKTENQEASSESSACVWTVVKTESQEASSESSACGWTVVKTEKQETSSESSACGWTVVKTESQEASSESSACGWTVVKTESQAASSECSACGWTVVKTENQEASSESSASGWTGVKTEEDGLALGPFPQHLPESLNSTSKDLEEMVKLEAEDCVGEIPSSFPEQVFGDKVKEECSVELDSGCHQGTLSSSREMRRQAVMQREEPQPAKSLPVSQDSADEGSTSGDASKGWPKSTPSCMEQETVLSSPPGKPEDSANADGQSVGTPAGPDPGGEKDGPEDEEEEEFDELTQDEEDELSSASEESVLSVPELQETMEKLTWLASERSMSQEGESEEENSQEENSEPEEEEEEEAEGMEALQKEGDVNDEAVGDAAEKQPSTLASPKTAPQVETSVTPAEGKSMYSRRPDVTFVASTTHRMQQPVMLHIRPHPELPELLNSHHC", "length": 1760, "header": "tr|A0A9J7JB96-1|A0A9J7JB96_CRIGR Computationally mapped isoform of GON-4-like protein isoform X8 OS=Cricetulus griseus OX=10029 GN=LOC100764952 PE=4 SV=1 CANONICAL=A0A9J7J7R7-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 906, "start_aa": "Thr", "end_pos": 906, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr906", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F1T7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1T7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F1T7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F1T7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100764952", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764952", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J7R7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7R7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J7R7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7R7" } ], "pmid": "" }, { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J7R7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7R7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "transcription coregulator activity", "id": "GO:0003712", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003712", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J7R7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7R7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1495, "end_pos": 1497, "annotation": "n_glycosylation_sequon" }, { "start_pos": 505, "end_pos": 507, "annotation": "n_glycosylation_sequon" }, { "start_pos": 575, "end_pos": 577, "annotation": "n_glycosylation_sequon" }, { "start_pos": 803, "end_pos": 805, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 906 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1495, "end_pos": 1497 }, { "start_pos": 505, "end_pos": 507 }, { "start_pos": 575, "end_pos": 577 }, { "start_pos": 803, "end_pos": 805 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7J9V7-1", "uniprot_ac": "A0A9J7J9V7", "uniprot_id": "A0A9J7J9V7_CRIGR", "mass": { "chemical_mass": 90979.0, "monoisotopic_mass": 90979.0 }, "refseq": { "ac": "XP_027249058", "name": "pre-B-cell leukemia transcription factor-interacting protein 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027249058" }, "gene_names": [ { "name": "Pbxip1", "type": "recommended", "evidence": [ { "id": "A0A9J7J9V7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9V7" } ] }, { "name": "Pbxip1", "type": "synonym", "evidence": [ { "id": "XP_027249058", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027249058" } ] } ], "protein_names": [ { "name": "Pre-B-cell leukemia transcription factor-interacting protein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7J9V7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9V7/entry#names_and_taxonomy" } ] }, { "name": "pre-B-cell leukemia transcription factor-interacting protein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027249058", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027249058" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027249058", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027249058" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J9V7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9V7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Pbxip1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9V7", "locus": {} } ], "crossref": [ { "id": "100759705", "url": "https://www.ncbi.nlm.nih.gov/gene/100759705", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR051990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100759705", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759705", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7J9V7", "url": "https://www.orthodb.org/?gene=A0A9J7J9V7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR28638", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28638", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR28638:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR28638:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF27631", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF27631", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027249058", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027249058", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F206", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F206", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F206-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F206-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F2W4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2W4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F2W4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F2W4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F6Z1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6Z1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F6Z1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6Z1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F736", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F736", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F736-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F736-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J9V7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9V7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J9V7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9V7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTSSCPDSDNSWVLAGSENLPVETLGPEPRMDPESVGASQALSDPSKADGEELTGTLDGEGKLFQTEGSWNESATLPEEMKAKGTLGCDGHGMEPPGDTFIQEDLQETPVATSLGPDTQDLENESPPQNLPSSPKAVWKECHCSSSDDDTDVDVEGLRRRRGREPSPAQPATPMDAEDQAKGEGVGGELGISLNMCLLGTLVLLGLGILLFSGGLLEPETGSMEEAELQVFPDTGLETELVDTVGNRKDELEQLQASVLPDSGPSLQSMGLLLDKLAKENQDIRLLQAQLQAQKEELQNLLHQPQGLEEENARLREALQQGKTSHQALELELQQLRARLQGLEANCVRGADGVCLNWGGGPSDKATKEQGHKGQEPDPSLLEQHKRLEAEAQALRQELQRQWQLLGSVHRDLQRGLQNAGQGAPAHAGLAELGHMLAQTLQGLENWGHNNGIPANDSEAWYQKKPHFQNSREWSRKEKWHGGPRHQKAEHWKHGKEESGQDEHWKHGKEESGRDEHWKHRKEESGRDEHWKHRKEESGRDEHWKHRKEESGRDEHWKHRKEESGQDEHWKHRKEESGRKRKRSWRDGNGEATGVWKEDKPRVEELGNRKDGKRQDFKVYPRKSGDSHSGERQKPSWGKDNSPDPLSSWEELLKRKYRPPQGCSGVDDCARQEGLTFFGTELAPVRLQELASVLRTYLERLPWAGQLTKELPLLPAYFGEDGIFRHDRLRFRDFVDALEDSLEEAALKQMGDDDEVDDFEDFIFSHFFGDKALKKRSRRKEKHSWNHRVVGPREEHDRHPHHYYHG", "length": 805, "header": "tr|A0A9J7J9V7-1|A0A9J7J9V7_CRIGR Isoform 1 of Pre-B-cell leukemia transcription factor-interacting protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Pbxip1 PE=4 SV=1 CANONICAL=A0A9J7J9V7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F206-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9V7/entry#A0A9J7F206-1", "sequence": { "sequence": "MTSSCPDSDNSWVLAGSENLPVETLGPEPRMDPESVGASQALSDPSKADGEELTGTLDGEGKLFQTEGSWNESATLPEEMKAKGTLGCDGHGMEPPGDTFIQEDLQETPVATSLGPDTQDLENESPPQNLPSSPKAVWKECHCSSSDDDTDVDVEGLRRRRGREPSPAQPATPMDAEDQAKGEGVGGELGISLNMCLLGTLVLLGLGILLFSGGLLEPETGSMEEAELQVFPDTGLETELVDTVGNRKAQKEELQNLLHQPQGLEEENARLREALQQGKTSHQALELELQQLRARLQGLEANCVRGADGVCLNWGGGPSDKATKEQGHKGQEPDPSLLEQHKRLEAEAQALRQELQRQWQLLGSVHRDLQRGLQNAGQGAPAHAGLAELGHMLAQTLQGLENWGHNNGIPANDSEAWYQKKPHFQNSREWSRKEKWHGGPRHQKAEHWKHGKEESGQDEHWKHGKEESGRDEHWKHRKEESGRDEHWKHRKEESGRDEHWKHRKEESGRDEHWKHRKEESGQDEHWKHRKEESGRKRKRSWRDGNGEATGVWKEDKPRVEELGNRKDGKRQDFKVYPRKSGDSHSGERQKPSWGKDNSPDPLSSWEELLKRKYRPPQGCSGVDDCARQEGLTFFGTELAPVRLQELASVLRTYLERLPWAGQLTKELPLLPAYFGEDGIFRHDRLRFRDFVDALEDSLEEAALKQMGDDDEVDDFEDFIFSHFFGDKALKKRSRRKEKHSWNHRVVGPREEHDRHPHHYYHG", "length": 762, "header": "tr|A0A9J7F206-1|A0A9J7J9V7_CRIGR Computationally mapped isoform of Pre-B-cell leukemia transcription factor-interacting protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Pbxip1 PE=4 SV=1 CANONICAL=A0A9J7J9V7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F2W4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9V7/entry#A0A9J7F2W4-1", "sequence": { "sequence": "MTSSCPDSDNSWVLAGSENLPVETLGPEPRMDPESVGASQALSDPSKADGEELTGTLDGEGKLFQTEGSWNESATLPEEMKAKGTLGCDGHGMEPPGDTFIQEDLQETPVATSLGPDTQDLENESPPQNLPSSPKAVWKECHCSSSDDDTDVDVEGLRRRRGREPSPAQPATPMDAEDQAKGEGVGGELGISLNMCLLGTLVLLGLGILLFSGSMEEAELQVFPDTGLETELVDTVGNRKDELEQLQASVLPDSGPSLQSMGLLLDKLAKENQDIRLLQAQLQAQKEELQNLLHQPQGLEEENARLREALQQGKTSHQALELELQQLRARLQGLEANCVRGADGVCLNWGGGPSDKATKEQGHKGQEPDPSLLEQHKRLEAEAQALRQELQRQWQLLGSVHRDLQRGLQNAGQGAPAHAGLAELGHMLAQTLQGLENWGHNNGIPANDSEAWYQKKPHFQNSREWSRKEKWHGGPRHQKAEHWKHGKEESGQDEHWKHGKEESGRDEHWKHRKEESGRDEHWKHRKEESGRDEHWKHRKEESGRDEHWKHRKEESGQDEHWKHRKEESGRKRKRSWRDGNGEATGVWKEDKPRVEELGNRKDGKRQDFKVYPRKSGDSHSGERQKPSWGKDNSPDPLSSWEELLKRKYRPPQGCSGVDDCARQEGLTFFGTELAPVRLQELASVLRTYLERLPWAGQLTKELPLLPAYFGEDGIFRHDRLRFRDFVDALEDSLEEAALKQMGDDDEVDDFEDFIFSHFFGDKALKKRSRRKEKHSWNHRVVGPREEHDRHPHHYYHG", "length": 797, "header": "tr|A0A9J7F2W4-1|A0A9J7J9V7_CRIGR Computationally mapped isoform of Pre-B-cell leukemia transcription factor-interacting protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Pbxip1 PE=4 SV=1 CANONICAL=A0A9J7J9V7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F6Z1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9V7/entry#A0A9J7F6Z1-1", "sequence": { "sequence": "MDPESVGASQALSDPSKADGEELTGTLDGEGKLFQTEGSWNESATLPEEMKAKGTLGCDGHGMEPPGDTFIQEDLQETPVATSLGPDTQDLENESPPQNLPSSPKAVWKECHCSSSDDDTDVDVEGLRRRRGREPSPAQPATPMDAEDQAKGEGVGGELGISLNMCLLGTLVLLGLGILLFSGGLLEPETGSMEEAELQVFPDTGLETELVDTVGNRKDELEQLQASVLPDSGPSLQSMGLLLDKLAKENQDIRLLQAQLQAQKEELQNLLHQPQGLEEENARLREALQQGKTSHQALELELQQLRARLQGLEANCVRGADGVCLNWGGGPSDKATKEQGHKGQEPDPSLLEQHKRLEAEAQALRQELQRQWQLLGSVHRDLQRGLQNAGQGAPAHAGLAELGHMLAQTLQGLENWGHNNGIPANDSEAWYQKKPHFQNSREWSRKEKWHGGPRHQKAEHWKHGKEESGQDEHWKHGKEESGRDEHWKHRKEESGRDEHWKHRKEESGRDEHWKHRKEESGRDEHWKHRKEESGQDEHWKHRKEESGRKRKRSWRDGNGEATGVWKEDKPRVEELGNRKDGKRQDFKVYPRKSGDSHSGERQKPSWGKDNSPDPLSSWEELLKRKYRPPQGCSGVDDCARQEGLTFFGTELAPVRLQELASVLRTYLERLPWAGQLTKELPLLPAYFGEDGIFRHDRLRFRDFVDALEDSLEEAALKQMGDDDEVDDFEDFIFSHFFGDKALKKRSRRKEKHSWNHRVVGPREEHDRHPHHYYHG", "length": 775, "header": "tr|A0A9J7F6Z1-1|A0A9J7J9V7_CRIGR Computationally mapped isoform of Pre-B-cell leukemia transcription factor-interacting protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Pbxip1 PE=4 SV=1 CANONICAL=A0A9J7J9V7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F736-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9V7/entry#A0A9J7F736-1", "sequence": { "sequence": "MTSSCPDSDNSWVLAGSENLPVETLGPEPRMDPESVGASQALSDPSKADGEELTGTLDGEGKLFQTEGSWNESATLPEEMKAKGTLGCDGHGMEPPGDTFIQEDLQETPVATSLGPDTQDLENESPPQNLPSSPKAVWKECHCSSSDDDTDVDVEGLRRRRGREPSPAQPATPMDAEDQAKGEGVGGELGISLNMCLLGTLVLLGLGILLFSGSMEEAELQVFPDTGLETELVDTVGNRKAQKEELQNLLHQPQGLEEENARLREALQQGKTSHQALELELQQLRARLQGLEANCVRGADGVCLNWGGGPSDKATKEQGHKGQEPDPSLLEQHKRLEAEAQALRQELQRQWQLLGSVHRDLQRGLQNAGQGAPAHAGLAELGHMLAQTLQGLENWGHNNGIPANDSEAWYQKKPHFQNSREWSRKEKWHGGPRHQKAEHWKHGKEESGQDEHWKHGKEESGRDEHWKHRKEESGRDEHWKHRKEESGRDEHWKHRKEESGRDEHWKHRKEESGQDEHWKHRKEESGRKRKRSWRDGNGEATGVWKEDKPRVEELGNRKDGKRQDFKVYPRKSGDSHSGERQKPSWGKDNSPDPLSSWEELLKRKYRPPQGCSGVDDCARQEGLTFFGTELAPVRLQELASVLRTYLERLPWAGQLTKELPLLPAYFGEDGIFRHDRLRFRDFVDALEDSLEEAALKQMGDDDEVDDFEDFIFSHFFGDKALKKRSRRKEKHSWNHRVVGPREEHDRHPHHYYHG", "length": 754, "header": "tr|A0A9J7F736-1|A0A9J7J9V7_CRIGR Computationally mapped isoform of Pre-B-cell leukemia transcription factor-interacting protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Pbxip1 PE=4 SV=1 CANONICAL=A0A9J7J9V7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J9V7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9V7/entry#A0A9J7J9V7-1", "sequence": { "sequence": "MTSSCPDSDNSWVLAGSENLPVETLGPEPRMDPESVGASQALSDPSKADGEELTGTLDGEGKLFQTEGSWNESATLPEEMKAKGTLGCDGHGMEPPGDTFIQEDLQETPVATSLGPDTQDLENESPPQNLPSSPKAVWKECHCSSSDDDTDVDVEGLRRRRGREPSPAQPATPMDAEDQAKGEGVGGELGISLNMCLLGTLVLLGLGILLFSGGLLEPETGSMEEAELQVFPDTGLETELVDTVGNRKDELEQLQASVLPDSGPSLQSMGLLLDKLAKENQDIRLLQAQLQAQKEELQNLLHQPQGLEEENARLREALQQGKTSHQALELELQQLRARLQGLEANCVRGADGVCLNWGGGPSDKATKEQGHKGQEPDPSLLEQHKRLEAEAQALRQELQRQWQLLGSVHRDLQRGLQNAGQGAPAHAGLAELGHMLAQTLQGLENWGHNNGIPANDSEAWYQKKPHFQNSREWSRKEKWHGGPRHQKAEHWKHGKEESGQDEHWKHGKEESGRDEHWKHRKEESGRDEHWKHRKEESGRDEHWKHRKEESGRDEHWKHRKEESGQDEHWKHRKEESGRKRKRSWRDGNGEATGVWKEDKPRVEELGNRKDGKRQDFKVYPRKSGDSHSGERQKPSWGKDNSPDPLSSWEELLKRKYRPPQGCSGVDDCARQEGLTFFGTELAPVRLQELASVLRTYLERLPWAGQLTKELPLLPAYFGEDGIFRHDRLRFRDFVDALEDSLEEAALKQMGDDDEVDDFEDFIFSHFFGDKALKKRSRRKEKHSWNHRVVGPREEHDRHPHHYYHG", "length": 805, "header": "tr|A0A9J7J9V7-1|A0A9J7J9V7_CRIGR Isoform 1 of Pre-B-cell leukemia transcription factor-interacting protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Pbxip1 PE=4 SV=1 CANONICAL=A0A9J7J9V7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F206", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F206" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F206", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F206" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100759705", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759705", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J9V7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9V7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 123, "end_pos": 125, "annotation": "n_glycosylation_sequon" }, { "start_pos": 455, "end_pos": 457, "annotation": "n_glycosylation_sequon" }, { "start_pos": 71, "end_pos": 73, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 123, "end_pos": 125 }, { "start_pos": 455, "end_pos": 457 }, { "start_pos": 71, "end_pos": 73 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. 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"MMTSVGTNRARGNWEQPQNQNQTQHKQRPQATAEQIRLAQMISDHNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKKKGVSGQKDGGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGRECMHGALSKPAVVRGQENGLDGAKSGGPSGRGTDRGRRGRGRGRGSSGRRGGRFSAQGMGTFNPADYAEPANTDDSYGNSSGSTWNNTGHFEPDDGTRLDFIGVEGSNYPRKFETAPGAWRTATEEWGTEDWNEDLSETKIFTASNVSSVPLPAENVTITAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQNAISQPASGNTFSHHSMVSMLGKGFGDVGEAKGGSTTGSQFLEQFKTAQALAQLAAQHSQSGSTTTSSWDMGSTTQSPSLVQYDLKSANDSTVHSPFTKRQAFTPSSTMMEVFLQEKPPAVATSTAAPPPPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKTSLTSKIPALAVEMPGSADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTVSSNQSQESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSVQATQLQTTQSVEGATGSAVKSDSPSTSSIPSLNETVPAASLLTTANQHSSSLSGLSHSEEIPNTTTTQHSSALSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTASTVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGVSVTSSNTGVPDISGSVYSKTQQSFEKQGFHSGTPAASFNLPSALGSGGPINPATAAAYPPAPFMHILTPHQQPHSQILHHHLQQDGQLPYLQMILCCQRQQEEQTGSGQRSQTSSIPQKPQTNKSAYNSYSWGAN", "length": 1135, "header": "tr|A0A9J7JBD5-1|A0A9J7JBD5_CRIGR Isoform 1 of Ubiquitin-associated protein 2-like isoform X29 OS=Cricetulus griseus OX=10029 GN=Ubap2l PE=4 SV=1 CANONICAL=A0A9J7JBD5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F214-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBD5/entry#A0A9J7F214-1", "sequence": { "sequence": "MMTSVGTNRARGNWEQPQNQNQTQHKQRPQATAEQIRLAQMISDHNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKKKGVSGQKDGGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGRECMHGALSKPAVVRGQENGLDGAKSGGPSGRGTDRGRRGRGRGRGSSGRRGGRFSAQGMGTFNPADYAEPANTDDSYGNSSGSTWNNTGHFEPDDGTSAWRTATEEWGTEDWNEDLSETKIFTASNVSSVPLPAENVTITAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQNAISQPASGNTFSHHSMVSMLGKGFGDVGEAKGGSTTGSQFLEQFKTAQALAQLAAQHSQSGSTTTSSWDMGSTTQSPSLVQYDLKSANDSTVHSPFTKRQAFTPSSTMMEVFLQEKPPAVATSTAAPPPPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKTSLTSKIPALAVEMPGSADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTVSSNQSQESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSVQATQLQTTQSVEGATGSAVKSDSPSTSSIPSLNETVPAASLLTTANQHSSSLSGLSHSEEIPNTTTTQHSSALSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTASTVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGVSVTSSNTGVPDISGSVYSKTQQSFEKQGFHSGTPAASFNLPSALGSGGPINPATAAAYPPAPFMHILTPHQQPHSQILHHHLQQDGQTGSGQRSQTSSIPQKPQTNKSAYNSYSWGAN", "length": 1098, "header": "tr|A0A9J7F214-1|A0A9J7JBD5_CRIGR Computationally mapped isoform of Ubiquitin-associated protein 2-like isoform X29 OS=Cricetulus griseus OX=10029 GN=Ubap2l PE=4 SV=1 CANONICAL=A0A9J7JBD5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F2Y3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBD5/entry#A0A9J7F2Y3-1", "sequence": { "sequence": "MMTSVGTNRARGNWEQPQNQNQTQHKQRPQATAEQIRLAQMISDHNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKKKGVSGQKDGGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGRECMHGALSKPAVVRGQENGLDGAKSGGPSGRGTDRGRRGRGRGRGSSGRRGGRFSAQGMGTFNPADYAEPANTDDSYGNSSGSTWNNTGHFEPDDGTSAWRTATEEWGTEDWNEDLSETKIFTASNVSSVPLPAENVTITAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQNAISQPASGNTFSHHSMVSMLGKGFGDVGEAKGGSTTGSQFLEQFKTAQALAQLAAQHSQSGSTTTSSWDMGSTTQSPSLVQYDLKSANDSTVHSPFTKRQAFTPSSTMMEVFLQEKPPAVATSTAAPPPPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKTSLTSKIPALAVEMPGSADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTVSSNQSQESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSVQATQLQTTQSVEGATGSAVKSDSPSTSSIPSLNETVPAASLLTTANQHSSSLSGLSHSEEIPNTTTTQHSSALSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTASTVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGRKYPPPYKHFWTAES", "length": 994, "header": "tr|A0A9J7F2Y3-1|A0A9J7JBD5_CRIGR Computationally mapped isoform of Ubiquitin-associated protein 2-like isoform X29 OS=Cricetulus griseus OX=10029 GN=Ubap2l PE=4 SV=1 CANONICAL=A0A9J7JBD5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F4E6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBD5/entry#A0A9J7F4E6-1", "sequence": { "sequence": "MMTSVGTNRARGNWEQPQNQNQTQHKQRPQATAEQIRLAQMISDHNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKKKGVSGQKDGGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGREFRGQENGLDGAKSGGPSGRGTDRGRRGRGRGRGSSGRRGGRFSAQGMGTFNPADYAEPANTDDSYGNSSGSTWNNTGHFEPDDGTRLDFIGVEGSNYPRKFETAPGAWRTATEEWGTEDWNEDLSETKIFTASNVSSVPLPAENVTITAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQNAISQPASGNTFSHHSMVSMLGKGFGDVGEAKGGSTTGSQFLEQFKTAQALAQLAAQHSQSGSTTTSSWDMGSTTQSPSLVQYDLKSANDSTVHSPFTKRQAFTPSSTMMEVFLQEKPPAVATSTAAPPPPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKTSLTSKIPALAVEMPGSADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTVSSNQSQESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSVQATQLQTTQSVEGATGSAVKSDSPSTSSIPSLNETVPAASLLTTANQHSSSLSGLSHSEEIPNTTTTQHSSALSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTASTVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGVSVTSSNTGVPDISGSVYSKTQQSFEKQGFHSGTPAASFNLPSALGSGGPINPATAAAYPPAPFMHILTPHQQPHSQILHHHLQQDGQLPYLQMILCCQRQQEEQDILTLVDDQLGE", "length": 1105, "header": "tr|A0A9J7F4E6-1|A0A9J7JBD5_CRIGR Computationally mapped isoform of Ubiquitin-associated protein 2-like isoform X29 OS=Cricetulus griseus OX=10029 GN=Ubap2l PE=4 SV=1 CANONICAL=A0A9J7JBD5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F5Q2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBD5/entry#A0A9J7F5Q2-1", "sequence": { "sequence": "MMTSVGTNRARGNWEQPQNQNQTQHKQRPQATAEQIRLAQMISDHNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKKKGVSGQKDGGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGRECMHGALSKPAVVRGQENGLDGAKSGGPSGRGTDRGRRGRGRGRGSSGRRGGRFSAQGMGTFNPADYAEPANTDDSYGNSSGSTWNNTGHFEPDDGTSAWRTATEEWGTEDWNEDLSETKIFTASNVSSVPLPAENVTITAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQNAISQPASGNTFSHHSMVSMLGKGFGDVGEAKGGSTTGSQFLEQFKTAQALAQLAAQHSQSGSTTTSSWDMGSTTQSPSLVQYDLKSANDSTVHSPFTKRQAFTPSSTMMEVFLQEKPPAVATSTAAPPPPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKTSLTSKIPALAVEMPGSADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTVSSNQSQESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSVQATQLQTTQSVEGATGSAVKSDSPSTSSIPSLNETVPAASLLTTANQHSSSLSGLSHSEEIPNTTTTQHSSALSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTASTVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGVSVTSSNTGVPDISGSVYSKTQQSFEKQGFHSGTPAASFNLPSALGSGGPINPATAAAYPPAPFMHILTPHQQPHSQILHHHLQQDGQDILTLVDDQLGE", "length": 1079, "header": "tr|A0A9J7F5Q2-1|A0A9J7JBD5_CRIGR Computationally mapped isoform of Ubiquitin-associated protein 2-like isoform X29 OS=Cricetulus griseus OX=10029 GN=Ubap2l PE=4 SV=1 CANONICAL=A0A9J7JBD5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F6B3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBD5/entry#A0A9J7F6B3-1", "sequence": { "sequence": "MMTSVGTNRARGNWEQPQNQNQTQHKQRPQATAEQIRLAQMISDHNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKKKGVSGQKDGGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGREFRGQENGLDGAKSGGPSGRGTDRGRRGRGRGRGSSGRRGGRFSAQGMGTFNPADYAEPANTDDSYGNSSGSTWNNTGHFEPDDGTRLDFIGVEGSNYPRKFETAPGAWRTATEEWGTEDWNEDLSETKIFTASNVSSVPLPAENVTITAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQNAISQPASGNTFSHHSMVSMLGKGFGDVGEAKGGSTTGSQFLEQFKTAQALAQLAAQHSQSGSTTTSSWDMGSTTQSPSLVQYDLKSANDSTVHSPFTKRQAFTPSSTMMEVFLQEKPPAVATSTAAPPPPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKTSLTSKIPALAVEMPGSADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTVSSNQSQESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSVQATQLQTTQSVEGATGSAVKSDSPSTSSIPSLNETVPAASLLTTANQHSSSLSGLSHSEEIPNTTTTQHSSALSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTASTVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGVSVTSSNTGVPDISGSVYSKTQQSFEKQGFHSGTPAASFNLPSALGSGGPINPATAAAYPPAPFMHILTPHQQPHSQILHHHLQQDGQTGSGQRSQTSSIPQKPQTNKSAYNSYSWGAN", "length": 1107, "header": "tr|A0A9J7F6B3-1|A0A9J7JBD5_CRIGR Computationally mapped isoform of Ubiquitin-associated protein 2-like isoform X29 OS=Cricetulus griseus OX=10029 GN=Ubap2l PE=4 SV=1 CANONICAL=A0A9J7JBD5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F6F9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBD5/entry#A0A9J7F6F9-1", "sequence": { "sequence": "MMTSVGTNRARGNWEQPQNQNQTQHKQRPQATAEQIRLAQMISDHNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKKKGVSGQKDGGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGRECMHGALSKPAVVRGQENGLDGAKSGGPSGRGTDRGRRGRGRGRGSSGRRGGRFSAQGMGTFNPADYAEPANTDDSYGNSSGSTWNNTGHFEPDDGTRLDFIGVEGSNYPRKFETAPGAWRTATEEWGTEDWNEDLSETKIFTASNVSSVPLPAENVTITAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQNAISQPASGNTFSHHSMVSMLGKGFGDVGEAKGGSTTGSQFLEQFKTAQALAQLAAQHSQSGSTTTSSWDMGSTTQSPSLVQYDLKSANDSTVHSPFTKRQAFTPSSTMMEVFLQEKPPAVATSTAAPPPPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKTSLTSKIPALAVEMPGSADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTVSSNQSQESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSVQATQLQTTQSVEGATGSAVKSDSPSTSSIPSLNETVPAASLLTTANQHSSSLSGLSHSEEIPNTTTTQHSSALSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTASTVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGVSVTSSNTGVPDISGSVYSKTQQSFEKQGFHSGTPAASFNLPSALGSGGPINPATAAAYPPAPFMHILTPHQQPHSQILHHHLQQDGQTGSGQRSQTSSIPQKPQTNKSAYNSYSWGAN", "length": 1118, "header": "tr|A0A9J7F6F9-1|A0A9J7JBD5_CRIGR Computationally mapped isoform of Ubiquitin-associated protein 2-like isoform X29 OS=Cricetulus griseus OX=10029 GN=Ubap2l PE=4 SV=1 CANONICAL=A0A9J7JBD5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F711-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBD5/entry#A0A9J7F711-1", "sequence": { "sequence": "MMTSVGTNRARGNWEQPQNQNQTQHKQRPQATAEQIRLAQMISDHNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKKKGVSGQKDGGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGREFRGQENGLDGAKSGGPSGRGTDRGRRGRGRGRGSSGRRGGRFSAQGMGTFNPADYAEPANTDDSYGNSSGSTWNNTGHFEPDDGTSAWRTATEEWGTEDWNEDLSETKIFTASNVSSVPLPAENVTITAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQNAISQPASGNTFSHHSMVSMLGKGFGDVGEAKGGSTTGSQFLEQFKTAQALAQLAAQHSQSGSTTTSSWDMGSTTQSPSLVQYDLKSANDSTVHSPFTKRQAFTPSSTMMEVFLQEKPPAVATSTAAPPPPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKTSLTSKIPALAVEMPGSADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTVSSNQSQESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSVQATQLQTTQSVEGATGSAVKSDSPSTSSIPSLNETVPAASLLTTANQHSSSLSGLSHSEEIPNTTTTQHSSALSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTASTVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGRKYPPPYKHFWTAES", "length": 983, "header": "tr|A0A9J7F711-1|A0A9J7JBD5_CRIGR Computationally mapped isoform of Ubiquitin-associated protein 2-like isoform X29 OS=Cricetulus griseus OX=10029 GN=Ubap2l PE=4 SV=1 CANONICAL=A0A9J7JBD5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F7C8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBD5/entry#A0A9J7F7C8-1", "sequence": { "sequence": "MMTSVGTNRARGNWEQPQNQNQTQHKQRPQATAEQIRLAQMISDHNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKKKGVSGQKDGGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGREFRGQENGLDGAKSGGPSGRGTDRGRRGRGRGRGSSGRRGGRFSAQGMGTFNPADYAEPANTDDSYGNSSGSTWNNTGHFEPDDGTSAWRTATEEWGTEDWNEDLSETKIFTASNVSSVPLPAENVTITAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQNAISQPASGNTFSHHSMVSMLGKGFGDVGEAKGGSTTGSQFLEQFKTAQALAQLAAQHSQSGSTTTSSWDMGSTTQSPSLVQYDLKSANDSTVHSPFTKRQAFTPSSTMMEVFLQEKPPAVATSTAAPPPPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKTSLTSKIPALAVEMPGSADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTVSSNQSQESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSVQATQLQTTQSVEGATGSAVKSDSPSTSSIPSLNETVPAASLLTTANQHSSSLSGLSHSEEIPNTTTTQHSSALSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTASTVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGVSVTSSNTGVPDISGSVYSKTQQSFEKQGFHSGTPAASFNLPSALGSGGPINPATAAAYPPAPFMHILTPHQQPHSQILHHHLQQDGQLPYLQMILCCQRQQEEQTGSGQRSQTSSIPQKPQTNKSAYNSYSWGAN", "length": 1104, "header": "tr|A0A9J7F7C8-1|A0A9J7JBD5_CRIGR Computationally mapped isoform of Ubiquitin-associated protein 2-like isoform X29 OS=Cricetulus griseus OX=10029 GN=Ubap2l PE=4 SV=1 CANONICAL=A0A9J7JBD5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H8K8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBD5/entry#A0A9J7H8K8-1", "sequence": { "sequence": "MMTSVGTNRARGNWEQPQNQNQTQHKQRPQATAEQIRLAQMISDHNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKKKGVSGQKDGGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGREFRGQENGLDGAKSGGPSGRGTDRGRRGRGRGRGSSGRRGGRFSAQGMGTFNPADYAEPANTDDSYGNSSGSTWNNTGHFEPDDGTRLDFIGVEGSNYPRKFETAPGAWRTATEEWGTEDWNEDLSETKIFTASNVSSVPLPAENVTITAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQNAISQPASGNTFSHHSMVSMLGKGFGDVGEAKGGSTTGSQFLEQFKTAQALAQLAAQHSQSGSTTTSSWDMGSTTQSPSLVQYDLKSANDSTVHSPFTKRQAFTPSSTMMEVFLQEKPPAVATSTAAPPPPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKTSLTSKIPALAVEMPGSADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTVSSNQSQESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSVQATQLQTTQSVEGATGSAVKSDSPSTSSIPSLNETVPAASLLTTANQHSSSLSGLSHSEEIPNTTTTQHSSALSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTASTVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGVSVTSSNTGVPDISGSVYSKTQQSFEKQGFHSGTPAASFNLPSALGSGGPINPATAAAYPPAPFMHILTPHQQPHSQILHHHLQQDGQLPYLQMILCCQRQQEEQTGSGQRSQTSSIPQKPQTNKSAYNSYSWGAN", "length": 1124, "header": "tr|A0A9J7H8K8-1|A0A9J7JBD5_CRIGR Computationally mapped isoform of Ubiquitin-associated protein 2-like isoform X29 OS=Cricetulus griseus OX=10029 GN=Ubap2l PE=4 SV=1 CANONICAL=A0A9J7JBD5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H9C2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBD5/entry#A0A9J7H9C2-1", "sequence": { "sequence": "MMTSVGTNRARGNWEQPQNQNQTQHKQRPQATAEQIRLAQMISDHNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKKKGVSGQKDGGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGRECMHGALSKPAVVRGQENGLDGAKSGGPSGRGTDRGRRGRGRGRGSSGRRGGRFSAQGMGTFNPADYAEPANTDDSYGNSSGSTWNNTGHFEPDDGTRLDFIGVEGSNYPRKFETAPGAWRTATEEWGTEDWNEDLSETKIFTASNVSSVPLPAENVTITAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQNAISQPASGNTFSHHSMVSMLGKGFGDVGEAKGGSTTGSQFLEQFKTAQALAQLAAQHSQSGSTTTSSWDMGSTTQSPSLVQYDLKSANDSTVHSPFTKRQAFTPSSTMMEVFLQEKPPAVATSTAAPPPPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKTSLTSKIPALAVEMPGSADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTVSSNQSQESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSVQATQLQTTQSVEGATGSAVKSDSPSTSSIPSLNETVPAASLLTTANQHSSSLSGLSHSEEIPNTTTTQHSSALSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTASTVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGVSVTSSNTGVPDISGSVYSKTQSFEKQGFHSGTPAASFNLPSALGSGGPINPATAAAYPPAPFMHILTPHQQPHSQILHHHLQQDGQLPYLQMILCCQRQQEEQTGSGQRSQTSSIPQKPQTNKSAYNSYSWGAN", "length": 1134, "header": "tr|A0A9J7H9C2-1|A0A9J7JBD5_CRIGR Computationally mapped isoform of Ubiquitin-associated protein 2-like isoform X29 OS=Cricetulus griseus OX=10029 GN=Ubap2l PE=4 SV=1 CANONICAL=A0A9J7JBD5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H9I6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBD5/entry#A0A9J7H9I6-1", "sequence": { "sequence": "MMTSVGTNRARGNWEQPQNQNQTQHKQRPQATAEQIRLAQMISDHNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKKKGVSGQKDGGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGRECMHGALSKPAVVRGQENGLDGAKSGGPSGRGTDRGRRGRGRGRGSSGRRGGRFSAQGMGTFNPADYAEPANTDDSYGNSSGSTWNNTGHFEPDDGTRLDFIGVEGSNYPRKFETAPGAWRTATEEWGTEDWNEDLSETKIFTASNVSSVPLPAENVTITAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQNAISQPASGNTFSHHSMVSMLGKGFGDVGEAKGGSTTGSQFLEQFKTAQALAQLAAQHSQSGSTTTSSWDMGSTTQSPSLVQYDLKSANDSTVHSPFTKRQAFTPSSTMMEVFLQEKPPAVATSTAAPPPPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKTSLTSKIPALAVEMPGSADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTVSSNQSQESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSVQATQLQTTQSVEGATGSAVKSDSPSTSSIPSLNETVPAASLLTTANQHSSSLSGLSHSEEIPNTTTTQHSSALSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTASTVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGVSVTSSNTGVPDISGSVYSKTQQSFEKQGFHSGTPAASFNLPSALGSGGPINPATAAAYPPAPFMHILTPHQQPHSQILHHHLQQDGQDILTLVDDQLGE", "length": 1099, "header": "tr|A0A9J7H9I6-1|A0A9J7JBD5_CRIGR Computationally mapped isoform of Ubiquitin-associated protein 2-like isoform X29 OS=Cricetulus griseus OX=10029 GN=Ubap2l PE=4 SV=1 CANONICAL=A0A9J7JBD5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HA73-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBD5/entry#A0A9J7HA73-1", "sequence": { "sequence": "MMTSVGTNRARGNWEQPQNQNQTQHKQRPQATAEQIRLAQMISDHNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKKKGVSGQKDGGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGREFRGQENGLDGAKSGGPSGRGTDRGRRGRGRGRGSSGRRGGRFSAQGMGTFNPADYAEPANTDDSYGNSSGSTWNNTGHFEPDDGTSAWRTATEEWGTEDWNEDLSETKIFTASNVSSVPLPAENVTITAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQNAISQPASGNTFSHHSMVSMLGKGFGDVGEAKGGSTTGSQFLEQFKTAQALAQLAAQHSQSGSTTTSSWDMGSTTQSPSLVQYDLKSANDSTVHSPFTKRQAFTPSSTMMEVFLQEKPPAVATSTAAPPPPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKTSLTSKIPALAVEMPGSADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTVSSNQSQESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSVQATQLQTTQSVEGATGSAVKSDSPSTSSIPSLNETVPAASLLTTANQHSSSLSGLSHSEEIPNTTTTQHSSALSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTASTVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGVSVTSSNTGVPDISGSVYSKTQSFEKQGFHSGTPAASFNLPSALGSGGPINPATAAAYPPAPFMHILTPHQQPHSQILHHHLQQDGQTGSGQRSQTSSIPQKPQTNKSAYNSYSWGAN", "length": 1086, "header": "tr|A0A9J7HA73-1|A0A9J7JBD5_CRIGR Computationally mapped isoform of Ubiquitin-associated protein 2-like isoform X29 OS=Cricetulus griseus OX=10029 GN=Ubap2l PE=4 SV=1 CANONICAL=A0A9J7JBD5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HBF9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBD5/entry#A0A9J7HBF9-1", "sequence": { "sequence": "MMTSVGTNRARGNWEQPQNQNQTQHKQRPQATAEQIRLAQMISDHNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKKKGVSGQKDGGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGREFRGQENGLDGAKSGGPSGRGTDRGRRGRGRGRGSSGRRGGRFSAQGMGTFNPADYAEPANTDDSYGNSSGSTWNNTGHFEPDDGTSAWRTATEEWGTEDWNEDLSETKIFTASNVSSVPLPAENVTITAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQNAISQPASGNTFSHHSMVSMLGKGFGDVGEAKGGSTTGSQFLEQFKTAQALAQLAAQHSQSGSTTTSSWDMGSTTQSPSLVQYDLKSANDSTVHSPFTKRQAFTPSSTMMEVFLQEKPPAVATSTAAPPPPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKTSLTSKIPALAVEMPGSADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTVSSNQSQESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSVQATQLQTTQSVEGATGSAVKSDSPSTSSIPSLNETVPAASLLTTANQHSSSLSGLSHSEEIPNTTTTQHSSALSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTASTVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGVSVTSSNTGVPDISGSVYSKTQSFEKQGFHSGTPAASFNLPSALGSGGPINPATAAAYPPAPFMHILTPHQQPHSQILHHHLQQDGQLPYLQMILCCQRQQEEQDILTLVDDQLGE", "length": 1084, "header": "tr|A0A9J7HBF9-1|A0A9J7JBD5_CRIGR Computationally mapped isoform of Ubiquitin-associated protein 2-like isoform X29 OS=Cricetulus griseus OX=10029 GN=Ubap2l PE=4 SV=1 CANONICAL=A0A9J7JBD5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HBQ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBD5/entry#A0A9J7HBQ1-1", "sequence": { "sequence": "MMTSVGTNRARGNWEQPQNQNQTQHKQRPQATAEQIRLAQMISDHNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKKKGVSGQKDGGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGREFRGQENGLDGAKSGGPSGRGTDRGRRGRGRGRGSSGRRGGRFSAQGMGTFNPADYAEPANTDDSYGNSSGSTWNNTGHFEPDDGTSAWRTATEEWGTEDWNEDLSETKIFTASNVSSVPLPAENVTITAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQNAISQPASGNTFSHHSMVSMLGKGFGDVGEAKGGSTTGSQFLEQFKTAQALAQLAAQHSQSGSTTTSSWDMGSTTQSPSLVQYDLKSANDSTVHSPFTKRQAFTPSSTMMEVFLQEKPPAVATSTAAPPPPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKTSLTSKIPALAVEMPGSADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTVSSNQSQESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSVQATQLQTTQSVEGATGSAVKSDSPSTSSIPSLNETVPAASLLTTANQHSSSLSGLSHSEEIPNTTTTQHSSALSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTASTVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGVSVTSSNTGVPDISGSVYSKTQSFEKQGFHSGTPAASFNLPSALGSGGPINPATAAAYPPAPFMHILTPHQQPHSQILHHHLQQDGQLPYLQMILCCQRQQEEQTGSGQRSQTSSIPQKPQTNKSAYNSYSWGAN", "length": 1103, "header": "tr|A0A9J7HBQ1-1|A0A9J7JBD5_CRIGR Computationally mapped isoform of Ubiquitin-associated protein 2-like isoform X29 OS=Cricetulus griseus OX=10029 GN=Ubap2l PE=4 SV=1 CANONICAL=A0A9J7JBD5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HCC0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBD5/entry#A0A9J7HCC0-1", "sequence": { "sequence": "MMTSVGTNRARGNWEQPQNQNQTQHKQRPQATAEQIRLAQMISDHNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKKKGVSGQKDGGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGRECMHGALSKPAVVRGQENGLDGAKSGGPSGRGTDRGRRGRGRGRGSSGRRGGRFSAQGMGTFNPADYAEPANTDDSYGNSSGSTWNNTGHFEPDDGTRLDFIGVEGSNYPRKFETAPGAWRTATEEWGTEDWNEDLSETKIFTASNVSSVPLPAENVTITAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQNAISQPASGNTFSHHSMVSMLGKGFGDVGEAKGGSTTGSQFLEQFKTAQALAQLAAQHSQSGSTTTSSWDMGSTTQSPSLVQYDLKSANDSTVHSPFTKRQAFTPSSTMMEVFLQEKPPAVATSTAAPPPPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKTSLTSKIPALAVEMPGSADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTVSSNQSQESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSVQATQLQTTQSVEGATGSAVKSDSPSTSSIPSLNETVPAASLLTTANQHSSSLSGLSHSEEIPNTTTTQHSSALSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTASTVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGVSVTSSNTGVPDISGSVYSKTQSFEKQGFHSGTPAASFNLPSALGSGGPINPATAAAYPPAPFMHILTPHQQPHSQILHHHLQQDGQTGSGQRSQTSSIPQKPQTNKSAYNSYSWGAN", "length": 1117, "header": "tr|A0A9J7HCC0-1|A0A9J7JBD5_CRIGR Computationally mapped isoform of Ubiquitin-associated protein 2-like isoform X29 OS=Cricetulus griseus OX=10029 GN=Ubap2l PE=4 SV=1 CANONICAL=A0A9J7JBD5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HCI9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBD5/entry#A0A9J7HCI9-1", "sequence": { "sequence": "MMTSVGTNRARGNWEQPQNQNQTQHKQRPQATAEQIRLAQMISDHNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKKKGVSGQKDGGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGRECMHGALSKPAVVRGQENGLDGAKSGGPSGRGTDRGRRGRGRGRGSSGRRGGRFSAQGMGTFNPADYAEPANTDDSYGNSSGSTWNNTGHFEPDDGTSAWRTATEEWGTEDWNEDLSETKIFTASNVSSVPLPAENVTITAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQNAISQPASGNTFSHHSMVSMLGKGFGDVGEAKGGSTTGSQFLEQFKTAQALAQLAAQHSQSGSTTTSSWDMGSTTQSPSLVQYDLKSANDSTVHSPFTKRQAFTPSSTMMEVFLQEKPPAVATSTAAPPPPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKTSLTSKIPALAVEMPGSADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTVSSNQSQESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSVQATQLQTTQSVEGATGSAVKSDSPSTSSIPSLNETVPAASLLTTANQHSSSLSGLSHSEEIPNTTTTQHSSALSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTASTVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGVSVTSSNTGVPDISGSVYSKTQQSFEKQGFHSGTPAASFNLPSALGSGGPINPATAAAYPPAPFMHILTPHQQPHSQILHHHLQQDGQLPYLQMILCCQRQQEEQTGSGQRSQTSSIPQKPQTNKSAYNSYSWGAN", "length": 1115, "header": "tr|A0A9J7HCI9-1|A0A9J7JBD5_CRIGR Computationally mapped isoform of Ubiquitin-associated protein 2-like isoform X29 OS=Cricetulus griseus OX=10029 GN=Ubap2l PE=4 SV=1 CANONICAL=A0A9J7JBD5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HDN8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBD5/entry#A0A9J7HDN8-1", "sequence": { "sequence": "MMTSVGTNRARGNWEQPQNQNQTQHKQRPQATAEQIRLAQMISDHNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKKKGVSGQKDGGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGRECMHGALSKPAVVRGQENGLDGAKSGGPSGRGTDRGRRGRGRGRGSSGRRGGRFSAQGMGTFNPADYAEPANTDDSYGNSSGSTWNNTGHFEPDDGTSAWRTATEEWGTEDWNEDLSETKIFTASNVSSVPLPAENVTITAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQNAISQPASGNTFSHHSMVSMLGKGFGDVGEAKGGSTTGSQFLEQFKTAQALAQLAAQHSQSGSTTTSSWDMGSTTQSPSLVQYDLKSANDSTVHSPFTKRQAFTPSSTMMEVFLQEKPPAVATSTAAPPPPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKTSLTSKIPALAVEMPGSADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTVSSNQSQESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSVQATQLQTTQSVEGATGSAVKSDSPSTSSIPSLNETVPAASLLTTANQHSSSLSGLSHSEEIPNTTTTQHSSALSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTASTVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGVSVTSSNTGVPDISGSVYSKTQSFEKQGFHSGTPAASFNLPSALGSGGPINPATAAAYPPAPFMHILTPHQQPHSQILHHHLQQDGQTGSGQRSQTSSIPQKPQTNKSAYNSYSWGAN", "length": 1097, "header": "tr|A0A9J7HDN8-1|A0A9J7HDN8_CRIGR Computationally mapped isoform of Ubiquitin-associated protein 2-like isoform X42 OS=Cricetulus griseus OX=10029 GN=Ubap2l PE=4 SV=1 CANONICAL=A0A9J7JBD5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J531-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBD5/entry#A0A9J7J531-1", "sequence": { "sequence": "MMTSVGTNRARGNWEQPQNQNQTQHKQRPQATAEQIRLAQMISDHNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKKKGVSGQKDGGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGRECMHGALSKPAVVRGQENGLDGAKSGGPSGRGTDRGRRGRGRGRGSSGRRGGRFSAQGMGTFNPADYAEPANTDDSYGNSSGSTWNNTGHFEPDDGTSAWRTATEEWGTEDWNEDLSETKIFTASNVSSVPLPAENVTITAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQNAISQPASGNTFSHHSMVSMLGKGFGDVGEAKGGSTTGSQFLEQFKTAQALAQLAAQHSQSGSTTTSSWDMGSTTQSPSLVQYDLKSANDSTVHSPFTKRQAFTPSSTMMEVFLQEKPPAVATSTAAPPPPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKTSLTSKIPALAVEMPGSADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTVSSNQSQESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSVQATQLQTTQSVEGATGSAVKSDSPSTSSIPSLNETVPAASLLTTANQHSSSLSGLSHSEEIPNTTTTQHSSALSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTASTVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGVSVTSSNTGVPDISGSVYSKTQSFEKQGFHSGTPAASFNLPSALGSGGPINPATAAAYPPAPFMHILTPHQQPHSQILHHHLQQDGQDILTLVDDQLGE", "length": 1078, "header": "tr|A0A9J7J531-1|A0A9J7J531_CRIGR Computationally mapped isoform of Ubiquitin-associated protein 2-like isoform X48 OS=Cricetulus griseus OX=10029 GN=Ubap2l PE=4 SV=1 CANONICAL=A0A9J7JBD5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J7W3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBD5/entry#A0A9J7J7W3-1", "sequence": { "sequence": "MMTSVGTNRARGNWEQPQNQNQTQHKQRPQATAEQIRLAQMISDHNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKKKGVSGQKDGGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGREFRGQENGLDGAKSGGPSGRGTDRGRRGRGRGRGSSGRRGGRFSAQGMGTFNPADYAEPANTDDSYGNSSGSTWNNTGHFEPDDGTSAWRTATEEWGTEDWNEDLSETKIFTASNVSSVPLPAENVTITAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQNAISQPASGNTFSHHSMVSMLGKGFGDVGEAKGGSTTGSQFLEQFKTAQALAQLAAQHSQSGSTTTSSWDMGSTTQSPSLVQYDLKSANDSTVHSPFTKRQAFTPSSTMMEVFLQEKPPAVATSTAAPPPPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKTSLTSKIPALAVEMPGSADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTVSSNQSQESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSVQATQLQTTQSVEGATGSAVKSDSPSTSSIPSLNETVPAASLLTTANQHSSSLSGLSHSEEIPNTTTTQHSSALSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTASTVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGVSVTSSNTGVPDISGSVYSKTQQSFEKQGFHSGTPAASFNLPSALGSGGPINPATAAAYPPAPFMHILTPHQQPHSQILHHHLQQDGQTGSGQRSQTSSIPQKPQTNKSAYNSYSWGAN", "length": 1087, "header": "tr|A0A9J7J7W3-1|A0A9J7J7W3_CRIGR Computationally mapped isoform of Ubiquitin-associated protein 2-like isoform X43 OS=Cricetulus griseus OX=10029 GN=Ubap2l PE=4 SV=1 CANONICAL=A0A9J7JBD5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J9V5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBD5/entry#A0A9J7J9V5-1", "sequence": { "sequence": "MMTSVGTNRARGNWEQPQNQNQTQHKQRPQATAEQIRLAQMISDHNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKKKGVSGQKDGGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGRECMHGALSKPAVVRGQENGLDGAKSGGPSGRGTDRGRRGRGRGRGSSGRRGGRFSAQGMGTFNPADYAEPANTDDSYGNSSGSTWNNTGHFEPDDGTRLDFIGVEGSNYPRKFETAPGAWRTATEEWGTEDWNEDLSETKIFTASNVSSVPLPAENVTITAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQNAISQPASGNTFSHHSMVSMLGKGFGDVGEAKGGSTTGSQFLEQFKTAQALAQLAAQHSQSGSTTTSSWDMGSTTQSPSLVQYDLKSANDSTVHSPFTKRQAFTPSSTMMEVFLQEKPPAVATSTAAPPPPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKTSLTSKIPALAVEMPGSADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTVSSNQSQESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSVQATQLQTTQSVEGATGSAVKSDSPSTSSIPSLNETVPAASLLTTANQHSSSLSGLSHSEEIPNTTTTQHSSALSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTASTVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGRKYPPPYKHFWTAES", "length": 1014, "header": "tr|A0A9J7J9V5-1|A0A9J7J9V5_CRIGR Computationally mapped isoform of Ubiquitin-associated protein 2-like isoform X51 OS=Cricetulus griseus OX=10029 GN=Ubap2l PE=4 SV=1 CANONICAL=A0A9J7JBD5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J9W6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBD5/entry#A0A9J7J9W6-1", "sequence": { "sequence": "MMTSVGTNRARGNWEQPQNQNQTQHKQRPQATAEQIRLAQMISDHNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKKKGVSGQKDGGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGREFRGQENGLDGAKSGGPSGRGTDRGRRGRGRGRGSSGRRGGRFSAQGMGTFNPADYAEPANTDDSYGNSSGSTWNNTGHFEPDDGTSAWRTATEEWGTEDWNEDLSETKIFTASNVSSVPLPAENVTITAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQNAISQPASGNTFSHHSMVSMLGKGFGDVGEAKGGSTTGSQFLEQFKTAQALAQLAAQHSQSGSTTTSSWDMGSTTQSPSLVQYDLKSANDSTVHSPFTKRQAFTPSSTMMEVFLQEKPPAVATSTAAPPPPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKTSLTSKIPALAVEMPGSADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTVSSNQSQESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSVQATQLQTTQSVEGATGSAVKSDSPSTSSIPSLNETVPAASLLTTANQHSSSLSGLSHSEEIPNTTTTQHSSALSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTASTVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGVSVTSSNTGVPDISGSVYSKTQSFEKQGFHSGTPAASFNLPSALGSGGPINPATAAAYPPAPFMHILTPHQQPHSQILHHHLQQDGQDILTLVDDQLGE", "length": 1067, "header": "tr|A0A9J7J9W6-1|A0A9J7J9W6_CRIGR Computationally mapped isoform of Ubiquitin-associated protein 2-like isoform X50 OS=Cricetulus griseus OX=10029 GN=Ubap2l PE=4 SV=1 CANONICAL=A0A9J7JBD5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JBD5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBD5/entry#A0A9J7JBD5-1", "sequence": { "sequence": "MMTSVGTNRARGNWEQPQNQNQTQHKQRPQATAEQIRLAQMISDHNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKKKGVSGQKDGGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGRECMHGALSKPAVVRGQENGLDGAKSGGPSGRGTDRGRRGRGRGRGSSGRRGGRFSAQGMGTFNPADYAEPANTDDSYGNSSGSTWNNTGHFEPDDGTRLDFIGVEGSNYPRKFETAPGAWRTATEEWGTEDWNEDLSETKIFTASNVSSVPLPAENVTITAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQNAISQPASGNTFSHHSMVSMLGKGFGDVGEAKGGSTTGSQFLEQFKTAQALAQLAAQHSQSGSTTTSSWDMGSTTQSPSLVQYDLKSANDSTVHSPFTKRQAFTPSSTMMEVFLQEKPPAVATSTAAPPPPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKTSLTSKIPALAVEMPGSADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTVSSNQSQESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSVQATQLQTTQSVEGATGSAVKSDSPSTSSIPSLNETVPAASLLTTANQHSSSLSGLSHSEEIPNTTTTQHSSALSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTASTVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGVSVTSSNTGVPDISGSVYSKTQQSFEKQGFHSGTPAASFNLPSALGSGGPINPATAAAYPPAPFMHILTPHQQPHSQILHHHLQQDGQLPYLQMILCCQRQQEEQTGSGQRSQTSSIPQKPQTNKSAYNSYSWGAN", "length": 1135, "header": "tr|A0A9J7JBD5-1|A0A9J7JBD5_CRIGR Isoform 1 of Ubiquitin-associated protein 2-like isoform X29 OS=Cricetulus griseus OX=10029 GN=Ubap2l PE=4 SV=1 CANONICAL=A0A9J7JBD5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K3H1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBD5/entry#A0A9J7K3H1-1", "sequence": { "sequence": "MMTSVGTNRARGNWEQPQNQNQTQHKQRPQATAEQIRLAQMISDHNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKKKGVSGQKDGGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGREFRGQENGLDGAKSGGPSGRGTDRGRRGRGRGRGSSGRRGGRFSAQGMGTFNPADYAEPANTDDSYGNSSGSTWNNTGHFEPDDGTSAWRTATEEWGTEDWNEDLSETKIFTASNVSSVPLPAENVTITAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQNAISQPASGNTFSHHSMVSMLGKGFGDVGEAKGGSTTGSQFLEQFKTAQALAQLAAQHSQSGSTTTSSWDMGSTTQSPSLVQYDLKSANDSTVHSPFTKRQAFTPSSTMMEVFLQEKPPAVATSTAAPPPPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKTSLTSKIPALAVEMPGSADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTVSSNQSQESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSVQATQLQTTQSVEGATGSAVKSDSPSTSSIPSLNETVPAASLLTTANQHSSSLSGLSHSEEIPNTTTTQHSSALSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTASTVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGVSVTSSNTGVPDISGSVYSKTQQSFEKQGFHSGTPAASFNLPSALGSGGPINPATAAAYPPAPFMHILTPHQQPHSQILHHHLQQDGQDILTLVDDQLGE", "length": 1068, "header": "tr|A0A9J7K3H1-1|A0A9J7JBD5_CRIGR Computationally mapped isoform of Ubiquitin-associated protein 2-like isoform X29 OS=Cricetulus griseus OX=10029 GN=Ubap2l PE=4 SV=1 CANONICAL=A0A9J7JBD5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KBA5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBD5/entry#A0A9J7KBA5-1", "sequence": { "sequence": "MMTSVGTNRARGNWEQPQNQNQTQHKQRPQATAEQIRLAQMISDHNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKKKGVSGQKDGGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGREFRGQENGLDGAKSGGPSGRGTDRGRRGRGRGRGSSGRRGGRFSAQGMGTFNPADYAEPANTDDSYGNSSGSTWNNTGHFEPDDGTSAWRTATEEWGTEDWNEDLSETKIFTASNVSSVPLPAENVTITAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQNAISQPASGNTFSHHSMVSMLGKGFGDVGEAKGGSTTGSQFLEQFKTAQALAQLAAQHSQSGSTTTSSWDMGSTTQSPSLVQYDLKSANDSTVHSPFTKRQAFTPSSTMMEVFLQEKPPAVATSTAAPPPPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKTSLTSKIPALAVEMPGSADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTVSSNQSQESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSVQATQLQTTQSVEGATGSAVKSDSPSTSSIPSLNETVPAASLLTTANQHSSSLSGLSHSEEIPNTTTTQHSSALSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTASTVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGVSVTSSNTGVPDISGSVYSKTQQSFEKQGFHSGTPAASFNLPSALGSGGPINPATAAAYPPAPFMHILTPHQQPHSQILHHHLQQDGQLPYLQMILCCQRQQEEQDILTLVDDQLGE", "length": 1085, "header": "tr|A0A9J7KBA5-1|A0A9J7JBD5_CRIGR Computationally mapped isoform of Ubiquitin-associated protein 2-like isoform X29 OS=Cricetulus griseus OX=10029 GN=Ubap2l PE=4 SV=1 CANONICAL=A0A9J7JBD5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KEL8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBD5/entry#A0A9J7KEL8-1", "sequence": { "sequence": "MMTSVGTNRARGNWEQPQNQNQTQHKQRPQATAEQIRLAQMISDHNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKKKGVSGQKDGGQTESNEEGKENRDRDRDYSRRRGGPPRRGRGASRGRECMHGALSKPAVVRGQENGLDGAKSGGPSGRGTDRGRRGRGRGRGSSGRRGGRFSAQGMGTFNPADYAEPANTDDSYGNSSGSTWNNTGHFEPDDGTRLDFIGVEGSNYPRKFETAPGAWRTATEEWGTEDWNEDLSETKIFTASNVSSVPLPAENVTITAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNSKQNAISQPASGNTFSHHSMVSMLGKGFGDVGEAKGGSTTGSQFLEQFKTAQALAQLAAQHSQSGSTTTSSWDMGSTTQSPSLVQYDLKSANDSTVHSPFTKRQAFTPSSTMMEVFLQEKPPAVATSTAAPPPPSSPLPSKSTSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKTSLTSKIPALAVEMPGSADISGLNLQFGALQFGSEPVLSDYESTPTTSASSSQAPSSLYTSTASESSSTVSSNQSQESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQTRRYPSSISSSPQKDLTQAKNGFSSVQATQLQTTQSVEGATGSAVKSDSPSTSSIPSLNETVPAASLLTTANQHSSSLSGLSHSEEIPNTTTTQHSSALSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTTASTVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGLLHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGDASSPAPATTLAQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNASATPFQQPSGYGSHGYNTGVSVTSSNTGVPDISGSVYSKTQQSFEKQGFHSGTPAASFNLPSALGSGGPINPATAAAYPPAPFMHILTPHQQPHSQILHHHLQQDGQLPYLQMILCCQRQQEEQDILTLVDDQLGE", "length": 1116, "header": "tr|A0A9J7KEL8-1|A0A9J7JBD5_CRIGR Computationally mapped isoform of Ubiquitin-associated protein 2-like isoform X29 OS=Cricetulus griseus OX=10029 GN=Ubap2l PE=4 SV=1 CANONICAL=A0A9J7JBD5-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 872, "start_aa": "Thr", "end_pos": 872, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr872", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 967, "start_aa": "Thr", "end_pos": 967, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr967", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F214", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F214" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F214", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F214" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100761650", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761650", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JBD5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBD5" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JBD5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBD5" } ], "pmid": "" }, { "name": "chromosome", "id": "GO:0005694", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005694", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JBD5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBD5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "hematopoietic stem cell homeostasis", "id": "GO:0061484", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061484", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JBD5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBD5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1123, "end_pos": 1125, "annotation": "n_glycosylation_sequon" }, { "start_pos": 21, "end_pos": 23, "annotation": "n_glycosylation_sequon" }, { "start_pos": 227, "end_pos": 229, "annotation": "n_glycosylation_sequon" }, { "start_pos": 234, "end_pos": 236, "annotation": "n_glycosylation_sequon" }, { "start_pos": 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This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027248604", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248604" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J9J6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9J6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ogfrl1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9J6", "locus": {} } ], "crossref": [ { "id": "A0A9J7J9J6", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7J9J6", "database": "AlphaFoldDB", "categories": [] }, { "id": "100757269", "url": "https://www.ncbi.nlm.nih.gov/gene/100757269", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006757", 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"MGNLLGGVSFREPTTVEDCDSTWQTDSEPEPEQPGPAGGGEEGQEHDEPEQPEQPPERAGGRPRASPVPEDHAEAAGAEQGGDPTEATAKPKRSFYAARDLYKYRHQYPNFKDIRYQNDLSNLRFYKNKIPFKPDGVYIEEVLNKWKGDYEKLEHNHTYIQWLFPLREQGLNFYAKELTTYEIEEFKKTKEAIRRFLLAYKMMLEFFGIKLIDKTGNVARAVNWQERFQHLNESQHNYLRITRILKSLGELGYESFKSPLVKFILHEALVENTIPNIRQSALEYFVYTIRDRRERRKLLRFAQKHYTPSENFIWGPPRKEQPERSKAQKTPTLPTSGSNSQTSMHKKSKDSKNSSVAIHLNSKTMEEKKGASRETGEETDKPSPEPCSEDTKPRNTEKDSAADESNSPPEEKTVTETTGKGVCPTSENIREGETQSKDLENPENTSCHDEKFTSLSHRKLLSCGTSQE", "length": 468, "header": "tr|A0A9J7J9I6-1|A0A9J7J9I6_CRIGR Computationally mapped isoform of Opioid growth factor receptor-like protein 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Ogfrl1 PE=3 SV=1 CANONICAL=A0A9J7J9J6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J9J6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9J6/entry#A0A9J7J9J6-1", "sequence": { "sequence": "MGNLLGGVSFREPTTVEDCDSTWQTDSEPEPEQPGPAGGGEEGQEHDEPEQPEQPPERAGGRPRASPVPEDHAEAAGAEQGGDPTEATAKPKRSFYAARDLYKYRHQYPQNFKDIRYQNDLSNLRFYKNKIPFKPDGVYIEEVLNKWKGDYEKLEHNHTYIQWLFPLREQGLNFYAKELTTYEIEEFKKTKEAIRRFLLAYKMMLEFFGIKLIDKTGNVARAVNWQERFQHLNESQHNYLRITRILKSLGELGYESFKSPLVKFILHEALVENTIPNIRQSALEYFVYTIRDRRERRKLLRFAQKHYTPSENFIWGPPRKEQPERSKAQKTPTLPTSGSNSQTSMHKKSKDSKNSSVAIHLNSKTMEEKKGASRETGEETDKPSPEPCSEDTKPRNTEKDSAADESNSPPEEKTVTETTGKGVCPTSENIREGETQSKDLENPENTSCHDEKFTSLSHRKLLSCGTSQE", "length": 469, "header": "tr|A0A9J7J9J6-1|A0A9J7J9J6_CRIGR Isoform 1 of Opioid growth factor receptor-like protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Ogfrl1 PE=3 SV=1 CANONICAL=A0A9J7J9J6-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 426, "start_aa": "Thr", "end_pos": 426, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr426", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F298", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F298" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F298", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F298" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100757269", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757269", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J9J6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9J6" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "opioid growth factor receptor activity", "id": "GO:0140625", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140625", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J9J6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9J6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 157, "end_pos": 159, "annotation": "n_glycosylation_sequon" }, { "start_pos": 233, "end_pos": 235, "annotation": "n_glycosylation_sequon" }, { "start_pos": 354, "end_pos": 356, "annotation": "n_glycosylation_sequon" }, { "start_pos": 445, "end_pos": 447, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7J9J6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9J6" }, { "id": "PF04664", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04664" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Opioid growth factor receptor (OGFr) conserved", "eco_id": "ECO_0000259", "start_pos": 118, "end_pos": 322, "start_aa": "Gln", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 426 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 157, "end_pos": 159 }, { "start_pos": 233, "end_pos": 235 }, { "start_pos": 354, "end_pos": 356 }, { "start_pos": 445, "end_pos": 447 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7JAD7-1", "uniprot_ac": "A0A9J7JAD7", "uniprot_id": "A0A9J7JAD7_CRIGR", "mass": { "chemical_mass": 95120.0, "monoisotopic_mass": 95120.0 }, "refseq": { "ac": "XP_027249809", "name": "progesterone-induced-blocking factor 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027249809" }, "gene_names": [ { "name": "Pibf1", "type": "recommended", "evidence": [ { "id": "A0A9J7JAD7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JAD7" } ] }, { "name": "Pibf1", "type": "synonym", "evidence": [ { "id": "XP_027249809", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027249809" } ] } ], "protein_names": [ { "name": "Progesterone-induced-blocking factor 1 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7JAD7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JAD7/entry#names_and_taxonomy" } ] }, { "name": "progesterone-induced-blocking factor 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027249809", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027249809" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027249809", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027249809" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JAD7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JAD7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Pibf1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JAD7", "locus": {} } ], "crossref": [ { "id": "A0A9J7JAD7", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JAD7", "database": "AlphaFoldDB", "categories": [] }, { "id": "100773979", "url": "https://www.ncbi.nlm.nih.gov/gene/100773979", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026205", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026205", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100773979", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773979", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JAD7", "url": "https://www.orthodb.org/?gene=A0A9J7JAD7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR18950", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR18950", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR18950:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR18950:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_027249809", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027249809", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F326", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F326", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F326-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F326-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F3X9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3X9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F3X9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F3X9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F7W0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7W0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F7W0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7W0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H9Q7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9Q7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H9Q7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H9Q7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JAD2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JAD2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JAD2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JAD2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JAD7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JAD7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JAD7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JAD7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSRKIPKESKKVNISSSLESEDISLETTIHTDDVSSSEEREGKIKITRQLIERKEILHNIQLLKIELSQKNMMIDNLKMDYLTKIEELEEKLNDALHQKQLLTLRLDNQLTIQQKDAKKYQELMKQEMDTILLRQKQLEETNQQLRDKAGDVRRNLRDLELTEEQYVKLKSFSEEQLSIPEYVSVRLYELVNPLRKEISELQVKKNELSEELSTNKGQLKQLTESSEQDRRNNSELQIRCQRLALELADTKQLIQQGDYRQENYDKIKSERDALEQEVLEVRRKHEILEASHIAQAKERSELSKEVTTLQQTVTLLQKDKEYLNRQNMELSVRCAHEEDRLERLQVQLEETKKAREDMYEKYVSSRDHYKTEYENKLHDELEQIKLKTNLEIDQLRSASREMYERENRNLREARDNALAEKSRAVAAEKDALEKHEQLLERYRELQLSTESKVSEFLHQSKLKSFESERVQLLQEETARNLAQCQLECEKYQKKLEVLTKEFYSLQTSSEKRITELEAQNSEHQARLDIYEKLEKELDEIIMQTAEIENEDEAERILYSYGYGANVPTTAKRRLKQSKTCTSQCRQLLLLSASGSMGTSDGSASTTSNLSLPPALQAPSTISSNLICLFTQSDRNRTSPLLDRANSLLNQTQQPYRYLIESVRQRDSKIDSLMKCTGQLEKDISNLNKEKSALLQTKNQMALDLEQLLNHREPVSISTAITHVLELCLPATVSSLWKPDLFSEFAAMKQIIINMCSKHSENNLLRPKMESGGVTEDQASKILSMPREHEDNIFIPKPTLFTKKDAQEWSKIQKTKA", "length": 816, "header": "tr|A0A9J7JAD7-1|A0A9J7JAD7_CRIGR Isoform 1 of Progesterone-induced-blocking factor 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Pibf1 PE=4 SV=1 CANONICAL=A0A9J7JAD7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F326-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JAD7/entry#A0A9J7F326-1", "sequence": { "sequence": "MSRKIPKESKKVNISSSLESEDISLETTIHTDDVSSSEEREGKIKITRQLIERKEILHNIQLLKIELSQKNMMIDNLKMDYLTKIEELEEKLNDALHQKQLLTLRLDNQLTIQQKDAKKYQELMKQEMDTILLRQKQLEETNQQLRDKAGDVRRNLRDLELTEEQYVKLKSFSEEQLSIPEYVSVRLYELVNPLRKEISELQVKKNELSEELSTNKGQLKQLTESSEQDRRNNSELQIRCQRLALELADTKQLIQQGDYRQENYDKIKSERDALEQEVLEVRRKHEILEASHIAQAKERSELSKEVTTLQQTVTLLQKDKEYLNRQNMELSVRCAHEEDRLERLQVQLEETKKAREDMYEKYVSSRDHYKTEYENKLHDELEQIKLKTNLEIDQLRSASREMYERENRNLREARDNALAEKSRAVAAEKDALEKHEQLLERYRELQLSTESKVSEFLHQSKLKSFESERVQLLQEETARNLAQCQLECEKYQKKLEVLTKEFYSLQTSSEKRITELEAQNSEHQARLDIYEKLEKELDEIIMQTAEIENEDEAERILYSYGYGANVPTTAKRRLKQSKTCTSQCRQLLLLSASGSMGTSDGSASTTSNLSLPPALQAPSTISSNLICLFTQSDRNRTSPLCSLGKKSSSVRKTKFINFKRSGTSEGPSKAAFPRA", "length": 675, "header": "tr|A0A9J7F326-1|A0A9J7JAD7_CRIGR Computationally mapped isoform of Progesterone-induced-blocking factor 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Pibf1 PE=4 SV=1 CANONICAL=A0A9J7JAD7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F3X9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JAD7/entry#A0A9J7F3X9-1", "sequence": { "sequence": "MSRKIPKESKKVNISSSLESEDISLETTIHTDDVSSSEEREGKIKITRQLIERKEILHNIQLLKIELSQKNMMIDNLKMDYLTKIEELEEKLNDALHQKQLLTLRLDNQLTIQQKDAKKYQELMKQEMDTILLRQKQLEETNQQLRDKAGDVRRNLRDLELTEEQYVKLKSFSEEQLSIPEYVSVRLYELVNPLRKEISELQVKKNELSEELSTNKGQLKQLTESSEQDRRNNSELQIRCQRLALELADTKQLIQQGDYRQENYDKIKSERDALEQEVLEVRRKHEILEASHIAQAKERSELSKEVTTLQQTVTLLQKDKEYLNRQNMELSVRCAHEEDRLERLQVQLEETKKAREDMYEKYVSSRDHYKTEYENKLHDELEQIKLKTNLEIDQLRSASREMYERENRNLREARDNALAEKSRAVAAEKDALEKHEQLLERYRELQLSTESKVSEFLHQSKLKSFESERVQLLQEETARNLAQCQLECEKYQKKLEVLTKEFYSLQTSSEKRITELEAQNSEHQARLDIYEKLEKELDEIIMQTAEIENEDEAERILYSYGYGANVPTTAKRRLKQSKTCTSQCRQLLLLSASGSMGTSDGSASTTSNLSLPPALQAPSTISSNLICLFTQSDRNRTSPLLDRANSLLNQTQQPYRYLIESVRQRDSKIDSLMKCTGQLEKDISNLNKEKSALLQTKNQMALDLEQLLNHREEFAAMKQIIINMCSKHSENNLLRPKMESGGVTEDQASKILSMPREHEDNIFIPKPTLFTKKDAQEWSKIQKTKA", "length": 786, "header": "tr|A0A9J7F3X9-1|A0A9J7JAD7_CRIGR Computationally mapped isoform of Progesterone-induced-blocking factor 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Pibf1 PE=4 SV=1 CANONICAL=A0A9J7JAD7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F7W0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JAD7/entry#A0A9J7F7W0-1", "sequence": { "sequence": "MSRKIPKESKKVNISSSLESEDISLETTIHTDDVSSSEEREGKIKITRQLIERKEILHNIQLLKIELSQKNMMIDNLKMDYLTKIEELEEKLNDALHQKQLLTLRLDNQLTIQQKDAKKYQELMKQEMDTILLRQKQLEETNQQLRDKAGDVRRNLRDLELTEEQYVKLKSFSEEQLSIPEYVSVRLYELVNPLRKEISELQVKKNELSEELSTNKGQLKQLTESSEQDRRNNSELQIRCQRLALELADTKQLIQQGDYRQENYDKIKSERDALEQEVLEVRRKHEILEASHIAQAKERSELSKEVTTLQQTVTLLQKDKEYLNRQNMELSVRCAHEEDRLERLQVQLEETKKAREDMYEKYVSSRDHYKTEYENKLHDELEQIKLKTNLEIDQLRSASREMYERENRNLREARDNALAEKSRAVAAEKDALEKHEQLLERYRELQLSTESKVSEFLHQSKLKSFESERVQLLQEETARNLAQCQLECEKYQKKLEVLTKEFYSLQTSSEKRITELEAQNSEHQARLDIYEKLEKELDEIIMQTAEIENEDEAERILYSYGYGANVPTTAKRRLKQSVHLARRVLQLEKQNSLILKDLEHQKDQVRRLSQELDRANSLLNQTQQPYRYLIESVRQRDSKIDSLMKCTGQLEKDISNLNKEKSALLQTKNQMALDLEQLLNHREEFAAMKQIIINMCSKHSENNLLRPKMESGGVTEDQASKILSMPREHEDNIFIPKPTLFTKKDAQEWSKIQKTKA", "length": 757, "header": "tr|A0A9J7F7W0-1|A0A9J7JAD7_CRIGR Computationally mapped isoform of Progesterone-induced-blocking factor 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Pibf1 PE=4 SV=1 CANONICAL=A0A9J7JAD7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H9Q7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JAD7/entry#A0A9J7H9Q7-1", "sequence": { "sequence": "MSRKIPKESKKVNISSSLESEDISLETTIHTDDVSSSEEREGKIKITRQLIERKEILHNIQLLKIELSQKNMMIDNLKMDYLTKIEELEEKLNDALHQKQLLTLRLDNQLTIQQKDAKKYQELMKQEMDTILLRQKQLEETNQQLRDKAGDVRRNLRDLELTEEQYVKLKSFSEEQLSIPEYVSVRLYELVNPLRKEISELQVKKNELSEELSTNKGQLKQLTESSEQDRRNNSELQIRCQRLALELADTKQLIQQGDYRQENYDKIKSERDALEQEVLEVRRKHEILEASHIAQAKERSELSKEVTTLQQTVTLLQKDKEYLNRQNMELSVRCAHEEDRLERLQVQLEETKKAREDMYEKYVSSRDHYKTEYENKLHDELEQIKLKTNLEIDQLRSASREMYERENRNLREARDNALAEKSRAVAAEKDALEKHEQLLERYRELQLSTESKVSEFLHQSKLKSFESERVQLLQEETARNLAQCQLECEKYQKKLEVLTKEFYSLQTSSEKRITELEAQNSEHQARLDIYEKLEKELDEIIMQTAEIENEDEAERILYSYGYGANVPTTAKRRLKQSKTCTSQCRQLLLLSASGSMGTSDGSASTTSNLSLPPALQAPSTISSNLICLFTQSDRNRTSPLLDRANSLLNQTQQPYRYLIESVRQRDSKIDSLMKCTGQLEKDISNLNKEKSALLQTKNQMALDLEQLLNHRESHLLLRPREW", "length": 722, "header": "tr|A0A9J7H9Q7-1|A0A9J7JAD7_CRIGR Computationally mapped isoform of Progesterone-induced-blocking factor 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Pibf1 PE=4 SV=1 CANONICAL=A0A9J7JAD7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JAD2-1", "url": 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CANONICAL=A0A9J7JAD7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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automated computational analysis. This record is derived from a genomic sequence (NW_003613652.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007611584", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007611584" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J3X1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J3X1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Fam71f2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J3X1", "locus": {} } ], "crossref": [ { "id": "A0A9J7J3X1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7J3X1", "database": "AlphaFoldDB", "categories": [] }, { "id": "100750641", "url": "https://www.ncbi.nlm.nih.gov/gene/100750641", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": 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"MSKIRGLPSAVRDPGPGVELGVEDGLLCQLIHSPEFNLFSDSVVFESTFIQTHVSGVGFQVTKQGNWMDAYERSATMILGVTSSVPSLPLPNVLLMANVTWPHGPFSTSSTPGAPVITLSRILPLKYVELQIYDRAQRILRVRTVTEKIYYLRLHEKHPQAVFQFWIRLVKILQKGLSITTKDPRIQFTHCLVPKIPNSSTEITPESSLPSSSQASETIMLLAAERASDSLLGFSKRHQLTGDGHTDTTPVKDKSNSCKTPPLMASSTNMPMRATLTHSLWEQEDPNENFLQVPVASSLGENLLGP", "length": 306, "header": "tr|A0A9J7J3X1-1|A0A9J7J3X1_CRIGR Isoform 1 of Protein FAM71F2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Fam71f2 PE=3 SV=1 CANONICAL=A0A9J7J3X1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F3H0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J3X1/entry#A0A9J7F3H0-1", "sequence": { "sequence": "MDAYERSATMILGVTSSVPSLPLPNVLLMANVTWPHGPFSTSSTPGAPVITLSRILPLKYVELQIYDRAQRILRVRTVTEKIYYLRLHEKHPQAVFQFWIRLVKILQKGLSITTKDPRIQFTHCLVPKIPNSSTEITPESSLPSSSQASETIMLLAAERASDSLLGFSKRHQLTGDGHTDTTPVKDKSNSCKTPPLMASSTNMPMRATLTHSLWEQEDPNENFLQVPVASSLGENLLGP", "length": 239, "header": "tr|A0A9J7F3H0-1|A0A9J7J3X1_CRIGR Computationally mapped isoform of Protein FAM71F2 isoform X2 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"https://www.uniprot.org/uniprotkb/A0A9J7JAK6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", 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"field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7HE87-1", "uniprot_ac": "A0A9J7HE87", "uniprot_id": "A0A9J7HE87_CRIGR", "mass": { "chemical_mass": 195974.0, "monoisotopic_mass": 195974.0 }, "refseq": { "ac": "XP_035308767", "name": "ankyrin-1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308767" }, "gene_names": [ { "name": "Ank1", "type": "recommended", "evidence": [ { "id": "A0A9J7HE87", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HE87" } ] }, { "name": "Ank1", "type": "synonym", "evidence": [ { "id": "XP_035308767", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308767" } ] } ], "protein_names": [ { "name": "Ankyrin-1 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7HE87", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HE87/entry#names_and_taxonomy" } ] }, { "name": "ankyrin-1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_035308767", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308767" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035308767", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308767" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HE87", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HE87" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ank1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HE87", "locus": {} } ], "crossref": [ { "id": "cd08805", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08805", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100754018", "url": "https://www.ncbi.nlm.nih.gov/gene/100754018", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000488", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000488", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000906", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000906", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011029", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011029", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040745", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040745", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051165", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051165", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100754018", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754018", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HE87", "url": "https://www.orthodb.org/?gene=A0A9J7HE87", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24123", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24123", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24123:SF71", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24123:SF71", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00023", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00023", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00531", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00531", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00791", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00791", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13637", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13637", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17809", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17809", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035308767", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308767", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F4T4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4T4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F4T4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4T4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HE87", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HE87", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HE87-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HE87-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HED8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HED8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HED8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HED8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KFC9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFC9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KFC9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KFC9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVVELLHKEIILETTTKKGNTALHIAALAGQDEVVRELVNYGANVNAQSQKGFTPLYMAAQENHLEVVKFLLENGANQNVATEDGFTPLAVALQQGHENVVAHLINYGTKGKVRLPALHIAARNDDTRTAAVLLQNDPNPDVLSKTGFTPLHIAAHYENLNVAQLLLNRGASVNFTPQNGITPLHIASRRGNVIMVRLLLDRGAQIETRTKDELTPLHCAARNGHVRISEILLDHGAPIQAKTKNGLSPIHMAAQGDHLDCVRLLLQYNAEIDDITLDHLTPLHVAAHCGHHRVAKVLLDKGAKPNSRALNGFTPLHIACKKNHIRVMELLLKTGASIDAVTESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTSMVKLLLENGASPNLATTAGHTPLHTAAREGHVDTALALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLGHDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQIEVARSLLQYGGSANAESVQGVTPLHLAAQEGHTEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVTVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSNGTTPLAIAKRLGYISVTDVLKVVTDETSVVLVSDKHRMSYPETVDEILDVSEDEGTAQITVMGEELVGSKAERRDSRDVGEEKELLDFVPKLDQVVESPAIPRIPCVTPETVVIRSEDPEQGSKEYDEDSLIPSSPATETSDNISPVASPVHTGFLVSFMVDARGGSMRGSRHNGLRVVIPPRTCAAPTRITCRLVKPQKLSTPPPLAEEEGLASRIIALGPTGAQFLSPVIVEIPHFASHGRGDRELVVLRSENGSVWKEHKSRYGESYLDQILNGMDEELGSLEELEKKRVCRIITTDFPLYFVIMSRLCQDYDTIGPEGGSLRSKLVPLVQATFPENAVTKKVKLALQAQPVPDELVTKLLGNQATFSPIVTVEPRRRKFHRPIGLRIPLPPSWTDNPRDSGEGDTTSLRLLCSVIGGTDQAQWEDITGTTKLVYANECANFTTNVSARFWLSDCPRTAEAVHFATLLYKELTAVPYMAKFVIFAKMNDPREGRLRCYCMTDDKVDKTLEQHENFVEVARSRDIEVLEGMPLFAELSGNLVPVKKATQQRSFHFQSFRENRLAIPVKVRDSSREPGGFLSFLRKAMKYEDTQHILCHLNITMPPCTKGGGAEDRRRTLTPLSLRYSILSESRLGFTSDTDRVDMKMAVITEHLGLSWAELARELQFTVEDINRIRVENPNSLLEQSAALLTLWVAREGENAKMENLYTALRNIDRSEIVNMLEGSGRQSRNLKPDRRHGDRDYSLSPSQMNGYSSLQDELLSPASLHYALPSPLCADQYWNEVAVIDAIPLAATEHDTMLEMSDMQVWSAGLTPSLVTAEDSSLECSKAEDSDATQEWKLEGALSEEPQGPELGSQDLVEDDTVDSDATNGLADVLGQEEGQQRVHARITDSPTVRQVLDRSQARTLDWDKQGSAVSYPQEAAQSSWQEEVTQGPHSFQRKITTIQGPEPTSLQGYEQTLVSTRAHVQSGPLESDSPQAGKEPSLWVSESTFSKEVQGGELQNIPGEQVTEEQFTDEQGNIVTKKIIRKVVRQVDSSGAIDTQQHEEVIVEGPLVDPGDLEADIESFMKLTKDHTSTPKP", "length": 1790, "header": "tr|A0A9J7HE87-1|A0A9J7HE87_CRIGR Isoform 1 of Ankyrin-1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ank1 PE=4 SV=1 CANONICAL=A0A9J7HE87-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F4T4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HE87/entry#A0A9J7F4T4-1", "sequence": { "sequence": "MWTFITQLLVTLVLLGFFLVSCQNVMHIVKGSLCFVLKHIHQELDKELGESEGLSEDEETISTRVVRRRVFLKGGELQNIPGEQVTEEQFTDEQGNIVTKKIIRKVVRQVDSSGAIDTQQHEEVIVEGPLVDPGDLEADIESFMKLTKDHTSTPKP", "length": 156, "header": "tr|A0A9J7F4T4-1|A0A9J7HE87_CRIGR Computationally mapped isoform of Ankyrin-1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ank1 PE=4 SV=1 CANONICAL=A0A9J7HE87-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HE87-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HE87/entry#A0A9J7HE87-1", "sequence": { "sequence": "MVVELLHKEIILETTTKKGNTALHIAALAGQDEVVRELVNYGANVNAQSQKGFTPLYMAAQENHLEVVKFLLENGANQNVATEDGFTPLAVALQQGHENVVAHLINYGTKGKVRLPALHIAARNDDTRTAAVLLQNDPNPDVLSKTGFTPLHIAAHYENLNVAQLLLNRGASVNFTPQNGITPLHIASRRGNVIMVRLLLDRGAQIETRTKDELTPLHCAARNGHVRISEILLDHGAPIQAKTKNGLSPIHMAAQGDHLDCVRLLLQYNAEIDDITLDHLTPLHVAAHCGHHRVAKVLLDKGAKPNSRALNGFTPLHIACKKNHIRVMELLLKTGASIDAVTESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTSMVKLLLENGASPNLATTAGHTPLHTAAREGHVDTALALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLGHDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQIEVARSLLQYGGSANAESVQGVTPLHLAAQEGHTEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVTVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSNGTTPLAIAKRLGYISVTDVLKVVTDETSVVLVSDKHRMSYPETVDEILDVSEDEGTAQITVMGEELVGSKAERRDSRDVGEEKELLDFVPKLDQVVESPAIPRIPCVTPETVVIRSEDPEQGSKEYDEDSLIPSSPATETSDNISPVASPVHTGFLVSFMVDARGGSMRGSRHNGLRVVIPPRTCAAPTRITCRLVKPQKLSTPPPLAEEEGLASRIIALGPTGAQFLSPVIVEIPHFASHGRGDRELVVLRSENGSVWKEHKSRYGESYLDQILNGMDEELGSLEELEKKRVCRIITTDFPLYFVIMSRLCQDYDTIGPEGGSLRSKLVPLVQATFPENAVTKKVKLALQAQPVPDELVTKLLGNQATFSPIVTVEPRRRKFHRPIGLRIPLPPSWTDNPRDSGEGDTTSLRLLCSVIGGTDQAQWEDITGTTKLVYANECANFTTNVSARFWLSDCPRTAEAVHFATLLYKELTAVPYMAKFVIFAKMNDPREGRLRCYCMTDDKVDKTLEQHENFVEVARSRDIEVLEGMPLFAELSGNLVPVKKATQQRSFHFQSFRENRLAIPVKVRDSSREPGGFLSFLRKAMKYEDTQHILCHLNITMPPCTKGGGAEDRRRTLTPLSLRYSILSESRLGFTSDTDRVDMKMAVITEHLGLSWAELARELQFTVEDINRIRVENPNSLLEQSAALLTLWVAREGENAKMENLYTALRNIDRSEIVNMLEGSGRQSRNLKPDRRHGDRDYSLSPSQMNGYSSLQDELLSPASLHYALPSPLCADQYWNEVAVIDAIPLAATEHDTMLEMSDMQVWSAGLTPSLVTAEDSSLECSKAEDSDATQEWKLEGALSEEPQGPELGSQDLVEDDTVDSDATNGLADVLGQEEGQQRVHARITDSPTVRQVLDRSQARTLDWDKQGSAVSYPQEAAQSSWQEEVTQGPHSFQRKITTIQGPEPTSLQGYEQTLVSTRAHVQSGPLESDSPQAGKEPSLWVSESTFSKEVQGGELQNIPGEQVTEEQFTDEQGNIVTKKIIRKVVRQVDSSGAIDTQQHEEVIVEGPLVDPGDLEADIESFMKLTKDHTSTPKP", "length": 1790, "header": "tr|A0A9J7HE87-1|A0A9J7HE87_CRIGR Isoform 1 of Ankyrin-1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ank1 PE=4 SV=1 CANONICAL=A0A9J7HE87-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HED8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HE87/entry#A0A9J7HED8-1", "sequence": { "sequence": "MWTFITQLLVTLVLLGFFLVSCQNVMHIVKGSLCFVLKHIHQELDKELGESEGLSEDEETISTRVVRRRVFLKGGELQNIPGEQVTEEQFTDEQGNIVTKKDHTSTPKP", "length": 109, "header": "tr|A0A9J7HED8-1|A0A9J7HED8_CRIGR Computationally mapped isoform of Ankyrin-1 isoform X4 OS=Cricetulus griseus OX=10029 GN=Ank1 PE=4 SV=1 CANONICAL=A0A9J7HE87-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KFC9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HE87/entry#A0A9J7KFC9-1", "sequence": { "sequence": "MVKLLLENGASPNLATTAGHTPLHTAAREGHVDTALALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLGHDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQIEVARSLLQYGGSANAESVQGVTPLHLAAQEGHTEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVTVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSNGTTPLAIAKRLGYISVTDVLKVVTDETSVVLVSDKHRMSYPETVDEILDVSEDEGTAQITVMGEELVGSKAERRDSRDVGEEKELLDFVPKLDQVVESPAIPRIPCVTPETVVIRSEDPEQGSKEYDEDSLIPSSPATETSDNISPVASPVHTGFLVSFMVDARGGSMRGSRHNGLRVVIPPRTCAAPTRITCRLVKPQKLSTPPPLAEEEGLASRIIALGPTGAQFLSPVIVEIPHFASHGRGDRELVVLRSENGSVWKEHKSRYGESYLDQILNGMDEELGSLEELEKKRVCRIITTDFPLYFVIMSRLCQDYDTIGPEGGSLRSKLVPLVQATFPENAVTKKVKLALQAQPVPDELVTKLLGNQATFSPIVTVEPRRRKFHRPIGLRIPLPPSWTDNPRDSGEGDTTSLRLLCSVIGGTDQAQWEDITGTTKLVYANECANFTTNVSARFWLSDCPRTAEAVHFATLLYKELTAVPYMAKFVIFAKMNDPREGRLRCYCMTDDKVDKTLEQHENFVEVARSRDIEVLEGMPLFAELSGNLVPVKKATQQRSFHFQSFRENRLAIPVKVRDSSREPGGFLSFLRKAMKYEDTQHILCHLNITMPPCTKGGGAEDRRRTLTPLSLRYSILSESRLGFTSDTDRVDMKMAVITEHLGLSWAELARELQFTVEDINRIRVENPNSLLEQSAALLTLWVAREGENAKMENLYTALRNIDRSEIVNMLEGSGRQSRNLKPDRRHGDRDYSLSPSQMNGYSSLQDELLSPASLHYALPSPLCADQYWNEVAVIDAIPLAATEHDTMLEMSDMQVWSAGLTPSLVTAEDSSLECSKAEDSDATQEWKLEGALSEEPQGPELGSQDLVEDDTVDSDATNGLADVLGQEEGQRSEKKRQEVTGTEQDTETEVSVVSGQQRVHARITDSPTVRQVLDRSQARTLDWDKQGSAVSYPQEAAQSSWQEEVTQGPHSFQRKITTIQGPEPTSLQGYEQTLVSTRAHVQSGPLESDSPQAGKEPSLWVSESTFSKEVQGGELQNIPGEQVTEEQFTDEQGNIVTKKIIRKVVRQVDSSGAIDTQQHEEVIVEGPLVDPGDLEADIESFMKLTKDHTSTPKP", "length": 1391, "header": "tr|A0A9J7KFC9-1|A0A9J7HE87_CRIGR Computationally mapped isoform of Ankyrin-1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ank1 PE=4 SV=1 CANONICAL=A0A9J7HE87-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 930, "start_aa": "Thr", "end_pos": 930, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr930", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F4T4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4T4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F4T6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F4T6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100753034", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753034", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 407, "end_pos": 409, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7J7C0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7C0" }, { "id": "PF13679", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13679" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Methyltransferase", "eco_id": "ECO_0000259", "start_pos": 141, "end_pos": 403, "start_aa": "Lys", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 311 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 407, "end_pos": 409 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7J7L0-1", "uniprot_ac": "A0A9J7J7L0", "uniprot_id": "A0A9J7J7L0_CRIGR", "mass": { "chemical_mass": 128870.0, "monoisotopic_mass": 128870.0 }, "refseq": { "ac": "XP_027248699", "name": "folliculin-interacting protein 2 isoform X4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248699" }, "gene_names": [ { "name": "Fnip2", "type": "recommended", "evidence": [ { "id": "A0A9J7J7L0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7L0" } ] }, { "name": "Fnip2", "type": "synonym", "evidence": [ { "id": "XP_027248699", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248699" } ] } ], "protein_names": [ { "name": "Folliculin-interacting protein 2 isoform X4", "type": "synonym", "evidence": [ { "id": "A0A9J7J7L0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7L0/entry#names_and_taxonomy" } ] }, { "name": "folliculin-interacting protein 2 isoform X4", "type": "synonym", "evidence": [ { "id": "XP_027248699", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248699" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027248699", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248699" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J7L0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7L0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Fnip2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7L0", "locus": {} } ], "crossref": [ { "id": "A0A9J7J7L0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7J7L0", "database": "AlphaFoldDB", "categories": [] }, { "id": "100753221", "url": "https://www.ncbi.nlm.nih.gov/gene/100753221", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026156", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026156", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028084", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028084", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028085", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028085", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028086", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028086", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037545", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037545", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100753221", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753221", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7J7L0", "url": "https://www.orthodb.org/?gene=A0A9J7J7L0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21634", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21634", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21634:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21634:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14636", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14636", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14637", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14637", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14638", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14638", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027248699", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248699", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F583", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F583", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F583-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F583-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HBD6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBD6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HBD6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBD6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J4T5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J4T5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J4T5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J4T5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J7L0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7L0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J7L0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7L0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J9K9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9K9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J9K9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9K9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J9L7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9L7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J9L7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9L7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MCGGTAKATNWPAGQQESARCVTDATSGAGRIFKSLICAKIPKCARGGRGTNPEMLNHSWSCSEFDLSDIRLIVYQDCERRGRQVMFDSRAVQKMEEAAAQKAEDVPVKMSARCCQESGSVSSSSSSSSSSSSSSISSHSSRGSLQHSKEQLPKYQYTRPASDVNMLGEMMFGSVAMSYKGSTLKIHYIRSPPQLMISKVFSARVGSFCGSTNNLQDSFEYINQDPQAGKLNTNQNSLGPCRTGSNLGLLQACSSKLLQGVSEGGPLRLTRSASFFAAHSTPVDMPSRGQNEDRDSGIARSASLSSLLITPFPSPSSSTSSSSSYQRRWLRSQTTSLENGIFPRRSTDETFSLADESCSSNPAMVRRKKIAISIIFSLCEREAAQQNFQDFFFSHFPLFESHMNRLKSAIEKAMISCRKIAESSLRVQFYVSRLMEALGEFRGTIWNLYSVPRIAEPVWLTMMSSTLEKNQLCQRFLKEFILLIEQVNKNQFFAALLTAVLTYHLAWVPTVMPVDHPPIKAFSEKRTSQSVNTLAKTHPYNPLWAQLGDLYGAIGSPVRLTRTVVIGKQKDLVQRILYVLTYFLRCSELQENQLTWSGNQSEDDQVINGSKIVTALEKGEVEESEYVVVTVRNEPALVPPILPPVTTERRNLEPTRVAEIPEGTSTSELGHTPGKNRCKKPEQSSEASRMGFQEAEPDSSWTPQGIFCEDNQNDQEAPQDGSLSPPSCEVPRVRVRMDPQVDHEELHGEMLKKAADRSAAWPCPDRHSQEGIPVEKVTFHIGSSISPESDFESRTKKMEERLKICGQVHGTSASARPSMDSSLTQDQQGSRCSSKADFQRDFTLPQDKSSGGEGVSEDRGLQANVMACTVEQLSQAHGPLAASSCAAGSGQRPLKHTGDLQLKGKKRPSSQPVNTCRQQGGLLGAADVPCGDASGKAHFRIEGDIPRNESLDSALGDSDDEACALALLDLGPSCDRTTEGSLEVELPLPRSQSTSKPNIRNFGRSLLAGYCTTYMPDLVLHGTSSDEKLKQCLAADLAHTVHHPVLDEPIAEAVCIIADTDKWTVQVATSQRKVMDTMKLGQDVLVSNQVSCLLQSILQLYKLHLPADFCIMHLEDRLQEMYLKSKMLSEYLRGHTRVHVKELSVVLGIESNDLPLLTAIASTHSPYVAQILL", "length": 1173, "header": "tr|A0A9J7J7L0-1|A0A9J7J7L0_CRIGR Isoform 1 of Folliculin-interacting protein 2 isoform X4 OS=Cricetulus griseus OX=10029 GN=Fnip2 PE=3 SV=1 CANONICAL=A0A9J7J7L0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F583-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7L0/entry#A0A9J7F583-1", "sequence": { "sequence": "MAPTLLQKLFNKRGGGAASAQARPPKEEPAFSWSCSEFDLSDIRLIVYQDCERRGRQVMFDSRAVQKMEEAAAQKAEDVPVKMSARCCQESGSVSSSSSSSSSSSSSSISSHSSRGSLQHSKEQLPKYQYTRPASDVNMLGEMMFGSVAMSYKGSTLKIHYIRSPPQLMISKVFSARVGSFCGSTNNLQDSFEYINQDPQAGKLNTNQNSLGPCRTGSNLGLLQACSSKLLQGVSEGGPLRLTRSASFFAAHSTPVDMPSRGQNEDRDSGIARSASLSSLLITPFPSPSSSTSSSSSYQRRWLRSQTTSLENGIFPRRSTDETFSLADESCSSNPAMVRRKKIAISIIFSLCEREAAQQNFQDFFFSHFPLFESHMNRLKSAIEKAMISCRKIAESSLRVQFYVSRLMEALGEFRGTIWNLYSVPRIAEPVWLTMMSSTLEKNQLCQRFLKEFILLIEQVNKNQFFAALLTAVLTYHLAWVPTVMPVDHPPIKAFSEKRTSQSVNTLAKTHPYNPLWAQLGDLYGAIGSPVRLTRTVVIGKQKDLVQRILYVLTYFLRCSELQENQLTWSGNQSEDDQVINGSKIVTALEKGEVEESEYVVVTVRNEPALVPPILPPVTTERRNLEPTRVAEIPEGTSTSELGHTPGKNRCKKPEQSSEASRMGFQEAEPDSSWTPQGIFCEDNQNDQEAPQDGSLSPPSCEVPRVRVRMDPQVDHEELHGEMLKKAADRSAAWPCPDRHSQEGIPVEKVTFHIGSSISPESDFESRTKKMEERLKICGQVHGTSASARPSMDSSLTQDQQGSRCSSKADFQRDFTLPQDKSSGGEGVSEDRGLQANVMACTVEQLSQAHGPLAASSCAAGSGQRPLKHTGDLQLKGKKRPSSQPVNTCRQQGGLLGAADVPCGDASGKAHFRIEGDIPRNESLDSALGDSDDEACALALLDLGPSCDRTTEGSLEVELPLPRSQSTSKPNIRNFGRSLLAGYCTTYMPDLVLHGTSSDEKLKQCLAADLAHTVHHPVLDEPIAEAVCIIADTDKWTVQVATSQRKVMDTMKLGQDVLVSNQVSCLLQSILQLYKLHLPADFCIMHLEDRLQEMYLKSKMLSEYLRGHTRVHVKELSVVLGIESNDLPLLTAIASTHSPYVAQILL", "length": 1146, "header": "tr|A0A9J7F583-1|A0A9J7J7L0_CRIGR Computationally mapped isoform of Folliculin-interacting protein 2 isoform X4 OS=Cricetulus griseus OX=10029 GN=Fnip2 PE=3 SV=1 CANONICAL=A0A9J7J7L0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HBD6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7L0/entry#A0A9J7HBD6-1", "sequence": { "sequence": "MSARCCQESGSVSSSSSSSSSSSSSSISSHSSRGSLQHSKEQLPKYQYTRPASDVNMLGEMMFGSVAMSYKGSTLKIHYIRSPPQLMISKVFSARVGSFCGSTNNLQDSFEYINQDPQAGKLNTNQNSLGPCRTGSNLGLLQACSSKLLQGVSEGGPLRLTRSASFFAAHSTPVDMPSRGQNEDRDSGIARSASLSSLLITPFPSPSSSTSSSSSYQRRWLRSQTTSLENGIFPRRSTDETFSLADESCSSNPAMVRRKKIAISIIFSLCEREAAQQNFQDFFFSHFPLFESHMNRLKSAIEKAMISCRKIAESSLRVQFYVSRLMEALGEFRGTIWNLYSVPRIAEPVWLTMMSSTLEKNQLCQRFLKEFILLIEQVNKNQFFAALLTAVLTYHLAWVPTVMPVDHPPIKAFSEKRTSQSVNTLAKTHPYNPLWAQLGDLYGAIGSPVRLTRTVVIGKQKDLVQRILYVLTYFLRCSELQENQLTWSGNQSEDDQVINGSKIVTALEKGEVEESEYVVVTVRNEPALVPPILPPVTTERRNLEPTRVAEIPEGTSTSELGHTPGKNRCKKPEQSSEASRMGFQEAEPDSSWTPQGIFCEDNQNDQEAPQDGSLSPPSCEVPRVRVRMDPQVDHEELHGEMLKKAADRSAAWPCPDRHSQEGIPVEKVTFHIGSSISPESDFESRTKKMEERLKICGQVHGTSASARPSMDSSLTQDQQGSRCSSKADFQRDFTLPQDKSSGGEGVSEDRGLQANVMACTVEQLSQAHGPLAASSCAAGSGQRPLKHTGDLQLKGKKRPSSQPVNTCRQQGGLLGAADVPCGDASGKAHFRIEGDIPRNESLDSALGDSDDEACALALLDLGPSCDRTTEGSLEVELPLPRSQSTSKPNIRNFGRSLLAGYCTTYMPDLVLHGTSSDEKLKQCLAADLAHTVHHPVLDEPIAEAVCIIADTDKWTVQVATSQRKVMDTMKLGQDVLVSNQVSCLLQSILQLYKLHLPADFCIMHLEDRLQEMYLKSKMLSEYLRGHTRVHVKELSVVLGIESNDLPLLTAIASTHSPYVAQILL", "length": 1064, "header": "tr|A0A9J7HBD6-1|A0A9J7J7L0_CRIGR Computationally mapped isoform of Folliculin-interacting protein 2 isoform X4 OS=Cricetulus griseus OX=10029 GN=Fnip2 PE=3 SV=1 CANONICAL=A0A9J7J7L0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J4T5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7L0/entry#A0A9J7J4T5-1", "sequence": { "sequence": "MCGGTAKATNWPAGQQESARCVTDATSGAGRIFKSLICAKIPKCARGGRGTNPEMLNHSWSCSEFDLSDIRLIVYQDCERRGRQVMFDSRAVQKMEEAAAQKAEDVPVKMSARCCQESGSVSSSSSSSSSSSSSSISSHSSRGSLQHSKEQLPKYQYTRPASDVNMLGEMMFGSVAMSYKGSTLKIHYIRSPPQLMISKVFSARVGSFCGSTNNLQDSFEYINQDPQAGKLNTNQNSLGPCRTGSNLAHSTPVDMPSRGQNEDRDSGIARSASLSSLLITPFPSPSSSTSSSSSYQRRWLRSQTTSLENGIFPRRSTDETFSLADESCSSNPAMVRRKKIAISIIFSLCEREAAQQNFQDFFFSHFPLFESHMNRLKSAIEKAMISCRKIAESSLRVQFYVSRLMEALGEFRGTIWNLYSVPRIAEPVWLTMMSSTLEKNQLCQRFLKEFILLIEQVNKNQFFAALLTAVLTYHLAWVPTVMPVDHPPIKAFSEKRTSQSVNTLAKTHPYNPLWAQLGDLYGAIGSPVRLTRTVVIGKQKDLVQRILYVLTYFLRCSELQENQLTWSGNQSEDDQVINGSKIVTALEKGEVEESEYVVVTVRNEPALVPPILPPVTTERRNLEPTRVAEIPEGTSTSELGHTPGKNRCKKPEQSSEASRMGFQEAEPDSSWTPQGIFCEDNQNDQEAPQDGSLSPPSCEVPRVRVRMDPQVDHEELHGEMLKKAADRSAAWPCPDRHSQEGIPVEKVTFHIGSSISPESDFESRTKKMEERLKICGQVHGTSASARPSMDSSLTQDQQGSRCSSKADFQRDFTLPQDKSSGGEGVSEDRGLQANVMACTVEQLSQAHGPLAASSCAAGSGQRPLKHTGDLQLKGKKRPSSQPVNTCRQQGGLLGAADVPCGDASGKAHFRIEGDIPRNESLDSALGDSDDEACALALLDLGPSCDRTTEGSLEVELPLPRSQSTSKPNIRNFGRSLLAGYCTTYMPDLVLHGTSSDEKLKQCLAADLAHTVHHPVLDEPIAEAVCIIADTDKWTVQVATSQRKVMDTMKLGQDVLVSNQVSCLLQSILQLYKLHLPADFCIMHLEDRLQEMYLKSKMLSEYLRGHTRVHVKELSVVLGIESNDLPLLTAIASTHSPYVAQILL", "length": 1143, "header": "tr|A0A9J7J4T5-1|A0A9J7J4T5_CRIGR Computationally mapped isoform of Folliculin-interacting protein 2 isoform X6 OS=Cricetulus griseus OX=10029 GN=Fnip2 PE=3 SV=1 CANONICAL=A0A9J7J7L0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J7L0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7L0/entry#A0A9J7J7L0-1", "sequence": { "sequence": "MCGGTAKATNWPAGQQESARCVTDATSGAGRIFKSLICAKIPKCARGGRGTNPEMLNHSWSCSEFDLSDIRLIVYQDCERRGRQVMFDSRAVQKMEEAAAQKAEDVPVKMSARCCQESGSVSSSSSSSSSSSSSSISSHSSRGSLQHSKEQLPKYQYTRPASDVNMLGEMMFGSVAMSYKGSTLKIHYIRSPPQLMISKVFSARVGSFCGSTNNLQDSFEYINQDPQAGKLNTNQNSLGPCRTGSNLGLLQACSSKLLQGVSEGGPLRLTRSASFFAAHSTPVDMPSRGQNEDRDSGIARSASLSSLLITPFPSPSSSTSSSSSYQRRWLRSQTTSLENGIFPRRSTDETFSLADESCSSNPAMVRRKKIAISIIFSLCEREAAQQNFQDFFFSHFPLFESHMNRLKSAIEKAMISCRKIAESSLRVQFYVSRLMEALGEFRGTIWNLYSVPRIAEPVWLTMMSSTLEKNQLCQRFLKEFILLIEQVNKNQFFAALLTAVLTYHLAWVPTVMPVDHPPIKAFSEKRTSQSVNTLAKTHPYNPLWAQLGDLYGAIGSPVRLTRTVVIGKQKDLVQRILYVLTYFLRCSELQENQLTWSGNQSEDDQVINGSKIVTALEKGEVEESEYVVVTVRNEPALVPPILPPVTTERRNLEPTRVAEIPEGTSTSELGHTPGKNRCKKPEQSSEASRMGFQEAEPDSSWTPQGIFCEDNQNDQEAPQDGSLSPPSCEVPRVRVRMDPQVDHEELHGEMLKKAADRSAAWPCPDRHSQEGIPVEKVTFHIGSSISPESDFESRTKKMEERLKICGQVHGTSASARPSMDSSLTQDQQGSRCSSKADFQRDFTLPQDKSSGGEGVSEDRGLQANVMACTVEQLSQAHGPLAASSCAAGSGQRPLKHTGDLQLKGKKRPSSQPVNTCRQQGGLLGAADVPCGDASGKAHFRIEGDIPRNESLDSALGDSDDEACALALLDLGPSCDRTTEGSLEVELPLPRSQSTSKPNIRNFGRSLLAGYCTTYMPDLVLHGTSSDEKLKQCLAADLAHTVHHPVLDEPIAEAVCIIADTDKWTVQVATSQRKVMDTMKLGQDVLVSNQVSCLLQSILQLYKLHLPADFCIMHLEDRLQEMYLKSKMLSEYLRGHTRVHVKELSVVLGIESNDLPLLTAIASTHSPYVAQILL", "length": 1173, "header": "tr|A0A9J7J7L0-1|A0A9J7J7L0_CRIGR Isoform 1 of Folliculin-interacting protein 2 isoform X4 OS=Cricetulus griseus OX=10029 GN=Fnip2 PE=3 SV=1 CANONICAL=A0A9J7J7L0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J9K9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7L0/entry#A0A9J7J9K9-1", "sequence": { "sequence": "MCGGTAKATNWPAGQQESARCVTDATSGAGRIFKSLICAKIPKCARGGRGTNPEMLNHSWSCSEFDLSDIRLIVYQDCERRGRQVMFDSRAVQKMEEAAAQKAEDVPVKMSARCCQESGSVSSSSSSSSSSSSSSISSHSSRGSLQHSKEQLPKYQYTRPASDVNMLGEMMFGSVAMSYKGSTLKIHYIRSPPQLMISKVFSARVGSFCGSTNNLQDSFEYINQDPQAGKLNTNQNSLGPCRTGSNLGLLQACSSKLLQGVSEGGPLRLTRSASFFAAHSTPVDMPSRGQNEDRDSGIARSASLSSLLITPFPSPSSSTSSSSSYQRRWLRSQTTSLENGIFPRRSTDETFSLADESCSSNPAMVRRKKIAISIIFSLCEREAAQQNFQDFFFSHFPLFESHMNRLKSAIEKAMISCRKIAESSLRVQFYVSRLMEALGEFRGTIWNLYSVPRIAEPVWLTMMSSTLEKNQLCQRFLKEFILLIEQVNKNQFFAALLTAVLTYHLAWVPTVMPVDHPPIKAFSEKRTSQSVNTLAKTHPYNPLWAQLGDLYGAIGSPVRLTRTVVIGKQKDLVQRILYVLTYFLRCSELQENQLTWSGNQSEDDQVINGSKIVTALEKGEVEESEYVVVTVRNEPALVPPILPPVTTERRNLEPTRVAEIPEGTSTSELGHTPGKNRCKKPEQSSEASRMGFQEAEPDSSWTPQGIFCEDNQNDQEAPQDGSLSPPSCEVPRVRVRMDPQVDHEELHGEMLKKAADRSAAWPCPDRHSQEGIPVEKVTFHIGSSISPESDFESRTKKMEERLKICGQVHGTSASARPSMDSSLTQDQQGSRCSSKADFQRDFTLPQDKSSGGEGVSEDRGLQANVMACTVEQLSQAHGPLAASSCAAGSGQRPLKHTGDLQLKGKKRPSSQPVNTCRQQGGLLGAADVPCGDASGKAHFRIEGDIPRNESLDSALGDSDDEACALALLDLGPSCDRTTEGSLEVELPLPRSQSTSKPNIRNFGRSLLAGYCTTYMPDLVLHGTSSDEKLKQCLAADLAHTVHHPVLDEPIAEAVCIIADTDKWTVQVATSQRKVMDTMKLGQDVLVSNQVSCLLQSILQLYKLHLPADFD", "length": 1110, "header": "tr|A0A9J7J9K9-1|A0A9J7J9K9_CRIGR Computationally mapped isoform of Folliculin-interacting protein 2 isoform X8 OS=Cricetulus griseus OX=10029 GN=Fnip2 PE=3 SV=1 CANONICAL=A0A9J7J7L0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J9L7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7L0/entry#A0A9J7J9L7-1", "sequence": { "sequence": "MAPTLLQKLFNKRGGGAASAQARPPKEEPAFSWSCSEFDLSDIRLIVYQDCERRGRQVMFDSRAVQKMEEAAAQKAEDVPVKMSARCCQESGSVSSSSSSSSSSSSSSISSHSSRGSLQHSKEQLPKYQYTRPASDVNMLGEMMFGSVAMSYKGSTLKIHYIRSPPQLMISKVFSARVGSFCGSTNNLQDSFEYINQDPQAGKLNTNQNSLGPCRTGSNLAHSTPVDMPSRGQNEDRDSGIARSASLSSLLITPFPSPSSSTSSSSSYQRRWLRSQTTSLENGIFPRRSTDETFSLADESCSSNPAMVRRKKIAISIIFSLCEREAAQQNFQDFFFSHFPLFESHMNRLKSAIEKAMISCRKIAESSLRVQFYVSRLMEALGEFRGTIWNLYSVPRIAEPVWLTMMSSTLEKNQLCQRFLKEFILLIEQVNKNQFFAALLTAVLTYHLAWVPTVMPVDHPPIKAFSEKRTSQSVNTLAKTHPYNPLWAQLGDLYGAIGSPVRLTRTVVIGKQKDLVQRILYVLTYFLRCSELQENQLTWSGNQSEDDQVINGSKIVTALEKGEVEESEYVVVTVRNEPALVPPILPPVTTERRNLEPTRVAEIPEGTSTSELGHTPGKNRCKKPEQSSEASRMGFQEAEPDSSWTPQGIFCEDNQNDQEAPQDGSLSPPSCEVPRVRVRMDPQVDHEELHGEMLKKAADRSAAWPCPDRHSQEGIPVEKVTFHIGSSISPESDFESRTKKMEERLKICGQVHGTSASARPSMDSSLTQDQQGSRCSSKADFQRDFTLPQDKSSGGEGVSEDRGLQANVMACTVEQLSQAHGPLAASSCAAGSGQRPLKHTGDLQLKGKKRPSSQPVNTCRQQGGLLGAADVPCGDASGKAHFRIEGDIPRNESLDSALGDSDDEACALALLDLGPSCDRTTEGSLEVELPLPRSQSTSKPNIRNFGRSLLAGYCTTYMPDLVLHGTSSDEKLKQCLAADLAHTVHHPVLDEPIAEAVCIIADTDKWTVQVATSQRKVMDTMKLGQDVLVSNQVSCLLQSILQLYKLHLPADFCIMHLEDRLQEMYLKSKMLSEYLRGHTRVHVKELSVVLGIESNDLPLLTAIASTHSPYVAQILL", "length": 1116, "header": "tr|A0A9J7J9L7-1|A0A9J7J9L7_CRIGR Computationally mapped isoform of Folliculin-interacting protein 2 isoform X7 OS=Cricetulus griseus OX=10029 GN=Fnip2 PE=3 SV=1 CANONICAL=A0A9J7J7L0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F583", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F583" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F583", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F583" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100753221", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753221", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "protein-folding chaperone binding", "id": "GO:0051087", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051087", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J7L0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7L0" } ], "pmid": "" }, { "name": "ATPase inhibitor activity", "id": "GO:0042030", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042030", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J7L0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7L0" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "lysosomal membrane", "id": "GO:0005765", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005765", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J7L0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7L0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 57, "end_pos": 59, "annotation": "n_glycosylation_sequon" }, { "start_pos": 599, "end_pos": 601, "annotation": "n_glycosylation_sequon" }, { "start_pos": 608, "end_pos": 610, "annotation": "n_glycosylation_sequon" }, { "start_pos": 948, "end_pos": 950, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7J7L0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7L0" }, { "id": "PS51836", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51836" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "UDENN FNIP1/2-type", "eco_id": "ECO_0000259", "start_pos": 65, "end_pos": 1164, "start_aa": "Phe", "end_aa": "His", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 57, "end_pos": 59 }, { "start_pos": 599, "end_pos": 601 }, { "start_pos": 608, "end_pos": 610 }, { "start_pos": 948, "end_pos": 950 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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"n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7J8L1-1", "uniprot_ac": "A0A9J7J8L1", "uniprot_id": "A0A9J7J8L1_CRIGR", "mass": { "chemical_mass": 24575.0, "monoisotopic_mass": 24575.0 }, "refseq": { "ac": "XP_027250123", "name": "keratin-associated protein 10-11-like isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250123" }, "gene_names": [ { "name": "LOC100759701", "type": "recommended", "evidence": [ { "id": "A0A9J7J8L1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8L1" } ] }, { "name": "LOC100759701", "type": "synonym", "evidence": [ { "id": "XP_027250123", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250123" } ] } ], "protein_names": [ { "name": "Keratin-associated protein 10-11-like isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7J8L1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8L1/entry#names_and_taxonomy" } ] }, { "name": "keratin-associated protein 10-11-like isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027250123", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250123" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027250123", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250123" } ] }, { "annotation": "In the hair cortex, hair keratin intermediate filaments are embedded in an interfilamentous matrix, consisting of hair keratin-associated proteins (KRTAP), which are essential for the formation of a rigid and resistant hair shaft through their extensive disulfide bond cross-linking with abundant cysteine residues of hair keratins. The matrix proteins include the high-sulfur and high-glycine-tyrosine keratins.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F6X9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6X9#function" }, { "database": "UniProtKB", "id": "ARBA00003327", "url": "https://www.uniprot.org/uniprotkb/ARBA00003327#function" }, { "database": "UniProtKB", "id": "A0A9J7J8L1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8L1#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J8L1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8L1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100759701", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8L1", "locus": {} } ], "crossref": [ { "id": "A0A9J7J8L1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7J8L1", "database": "AlphaFoldDB", "categories": [] }, { "id": "100759701", "url": "https://www.ncbi.nlm.nih.gov/gene/100759701", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002494", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002494", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100759701", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759701", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PTHR23262", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23262", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23262:SF50", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23262:SF50", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13885", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13885", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027250123", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250123", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F6X9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6X9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F6X9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6X9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J8L1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8L1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J8L1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8L1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAASTMSVCSDACTNSSWQVDDCPESCCEPSCCAPSCCQSSCCVPSCCVPAPCLTLICTPMSCVSSPCCQSVCCTPSCCQQSSCQPSCCTSSPCCVTLCCKPVCCTPICSGSSSCCQQSSCQPSCCTSSPCCVTLCCKPVCCTPICSGSSSCCQQSSCQPSCCQPSCCVPVCCKPVCCKPCSSVSLLCRPVCRPACCVPTSSCSASSCQPSCCKPCSSMSLLCRPACSSQACCGLSSGQKSSC", "length": 243, "header": "tr|A0A9J7J8L1-1|A0A9J7J8L1_CRIGR Isoform 1 of Keratin-associated protein 10-11-like isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100759701 PE=4 SV=1 CANONICAL=A0A9J7J8L1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F6X9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8L1/entry#A0A9J7F6X9-1", "sequence": { "sequence": "MAASTMSVCSDACTNSSWQVDDCPESCCEPSCCAPTPCLTLICTPMSCVSSPCCQSVCCTPSCCQQSSCQPSCCTSSPCCVTLCCKPVCCTPICSGSSSCCQQSSCQPSCCTSSPCCVTLCCKPVCCTPICSGSSSCCQQSSCQPSCCQPSCCVPVCCKPVCCKPCSSVSLLCRPVCRPACCVPTSSCSASSCQPSCCKPCSSMSLLCRPACSSQACCGLSSGQKSSC", "length": 228, "header": "tr|A0A9J7F6X9-1|A0A9J7J8L1_CRIGR Computationally mapped isoform of Keratin-associated protein 10-11-like isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100759701 PE=4 SV=1 CANONICAL=A0A9J7J8L1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J8L1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8L1/entry#A0A9J7J8L1-1", "sequence": { "sequence": "MAASTMSVCSDACTNSSWQVDDCPESCCEPSCCAPSCCQSSCCVPSCCVPAPCLTLICTPMSCVSSPCCQSVCCTPSCCQQSSCQPSCCTSSPCCVTLCCKPVCCTPICSGSSSCCQQSSCQPSCCTSSPCCVTLCCKPVCCTPICSGSSSCCQQSSCQPSCCQPSCCVPVCCKPVCCKPCSSVSLLCRPVCRPACCVPTSSCSASSCQPSCCKPCSSMSLLCRPACSSQACCGLSSGQKSSC", "length": 243, "header": "tr|A0A9J7J8L1-1|A0A9J7J8L1_CRIGR Isoform 1 of Keratin-associated protein 10-11-like isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100759701 PE=4 SV=1 CANONICAL=A0A9J7J8L1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F6X9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F6X9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100759701", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759701", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J8L1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8L1" } ], "pmid": "" }, { "name": "keratin filament", "id": "GO:0045095", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045095", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J8L1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8L1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 15, "end_pos": 17, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 15, "end_pos": 17 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7JAN5-1", "uniprot_ac": "A0A9J7JAN5", "uniprot_id": "A0A9J7JAN5_CRIGR", "mass": { "chemical_mass": 188149.0, "monoisotopic_mass": 188149.0 }, "refseq": { "ac": "XP_027253195", "name": "A-kinase anchor protein SPHKAP isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253195" }, "gene_names": [ { "name": "Sphkap", "type": "recommended", "evidence": [ { "id": "A0A9J7JAN5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JAN5" } ] }, { "name": "Sphkap", "type": "synonym", "evidence": [ { "id": "XP_027253195", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253195" } ] } ], "protein_names": [ { "name": "A-kinase anchor protein SPHKAP isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027253195", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253195" }, { "id": "A0A9J7JAN5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JAN5/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027253195", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253195" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JAN5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JAN5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Sphkap", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JAN5", "locus": {} } ], "crossref": [ { "id": "100761697", "url": "https://www.ncbi.nlm.nih.gov/gene/100761697", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008382", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008382", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018292", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018292", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100761697", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761697", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JAN5", "url": "https://www.orthodb.org/?gene=A0A9J7JAN5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10226", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10226", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10226:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10226:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05716", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05716", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027253195", "url": 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"MWVVEPNPPTCLSAALPAKRHSQESSNVESPLMHEVLEPQQSSSSAAGSLAGSITACKKVLRSNSLLESTDYWLQNQRTPCQIGFVDDESENCASVCFVNLDVNKDACSTDHLQQKLLNVSPDLPKLINSMNVQQPKENEIVLLSGLASGNLQADFDVSQCPWLPDICLVQCARGNGSNSTNCIIFEINKFLIGLEVVQERQLHLETNVLKLEDDTNCSLSSIEEDFLTASEHLEEEIEVEEYRSGFETINLSANILEGKKLKEATQEGWDYHKEKSHCALGEKHIRKHRTPSMKTEGSKENIAESIALQSLNPSTRASGWKSEVAEENKQLATNPSYTENIKGETETSQMLYIPRNAYLSMVKKDGLSPCGVVTEQGSNHSDRGGMRNSLPVVQNGEATTGEYATNLAESVLQDAFIRLSQAQPTLPGESSVSFSVGSALIPGGCCTRDMVVPRSWDELPKIVIVQSPDGNDTAPEPSVSSRPEMEVSGETAGIFCGEGTSKPTQSALEVALACAATVIGTISSPQATERLTMEQESLISSYAQRGGEIQQTRVPQVLMGPSITEYSFPSALCGMTQVASAVAVCGLGEREEVTCPIAPRDLLPTSGASEETSSIGGLVKDRSTELGKEAIAGALLREAAWVLARPEAYSSIGDLLDSVNRSIIETTSKTQTLCKENIRMNELAQTLSNVILKHSIDEVHQRKTTAHPTDERQPYGTLDTLMESVNQLLHNVICLTFKKMCHLVTLGDHPTSLSKETIRWTESKPLGCQSFDDQAAGQAWAKSSACSSTHVLSNAHATGLGINDLEDTAPKQNKGGSKPGLFNNPRLQSEFSCSHRTLGSTAKASPKEIYLKGIVGEDSKTPHHTLSRDGNEQRASTEIGKLPKTSKCCSGSQETEDGIVPSTQEKYTCATPINNEVQVNRSLLGDDLVFPAQSALQAKQSQIYGITDFAEDLAETVVSMATEIAAICLDNSNGKQPWFCAWKRGNEFLVAPNGSCRSLKRKKENSGSGSTVRKHKPPRLSEIKRKTDEHPELKEKLMNRVMDESMNLEDTPDAVSTFANEVAAKIMNLTEFSVVDGVWQAQSCSRNRFLGGDRWNRLKASSCESIPEEDSDARVYVNSLGLMSTLSQPVSRASSVSKQSSCESITDEFSRFMVKQMENEGRGFELLLDYYAGKNASSILSSAMLQACQKNDHLNVRPSCPSKQSSTESITEEFYRYMLRDIAKEGKDGTSSRRSSHDWTMGLLSPSARSPLCYRQSSMPDSRSPCSRLTVNAPVKANSLDGFAQNSPQDSLSIQPVSRTSSSGLCKSDSCLYRRSGTDQITNMLIHETWASSIEALMKKNKIIVDGGEAAGVSPGPVSGGSSLQVVKCANRLATSRGHRRPTLLVEESVDSQRKDAVPESNRSPVLSPSNTAPVTKLSGFDARREISSCHNAIVLKHPRQTLCSRDVPLIQIETDQKEEGLGEHEPILPQSGSLEETDGHKPEETIPDVARSGDTDLRTCQSCCDSLENRKESETEVLKEARPTDESPNPPSSSEESTGSWSHLANEDDNPDDTSSFLQLSERSMSNGNSSATSSLGITDLDIYQESISSSPMINELVEEKEILKEQQESIKERASGLPGRAASPQRSLLVINFDLEPERPDAELRATLQWIAASELGIPTIYFKKSQESRIEKFLDVVKLVHQKSWKVGDIFHAVVQYCKMHAEKKEGTPSLFDWLLELG", "length": 1723, "header": "tr|A0A9J7JAN5-1|A0A9J7JAN5_CRIGR Isoform 1 of A-kinase anchor protein SPHKAP isoform X2 OS=Cricetulus griseus OX=10029 GN=Sphkap PE=3 SV=1 CANONICAL=A0A9J7JAN5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F7P6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JAN5/entry#A0A9J7F7P6-1", "sequence": { "sequence": "MWVVEPNPPTCLSAALPAKRHSQESSNVESPLMHEVLEPQQSSSSAAGSLAGSITACKKVLRSNSLLESTDYWLQNQRTPCQIGFVDDESENCASVCFVNLDVNKDACSTDHLQQKLLNVSPDLPKLINSMNVQQPKENEIVLLSGLASGNLQADFDVSQCPWLPDICLVQCARGNGSNSTNCIIFEINKFLIGLEVVQERQLHLETNVLKLEDDTNCSLSSIEEDFLTASEHLEEEIEVEEYRSGFETINLSANILEGKKLKEATQEGWDYHKEKSHCALGEKHIRKHRTPSMKTEGSKENIAESIALQSLNPSTRASGWKSEVAEENKQLATNPSYTENIKGETETSQMLYIPRNAYLSMVKKDGLSPCGVVTEQGSNHSDRGGMRNSLPVVQNGEATTGEYATNLAESVLQDAFIRLSQAQPTLPGESSVSFSVGSALIPGGCCTRDMVVPRSWDELPKIVIVQSPDGNDTAPEPSVSSRPEMEVSGETAGIFCGEGTSKPTQSALEVALACAATVIGTISSPQATERLTMEQESLISSYAQRGGEIQQTRVPQVLMGPSITEYSFPSALCGMTQVASAVAVCGLGEREEVTCPIAPRDLLPTSGASEETSSIGGLVKDRSTELGKEAIAGALLREAAWVLARPEAYSSIGDLLDSVNRSIIETTSKTQTLCKENIRMNELAQTLSNVILKHSIDEVHQRKTTAHPTDERQPYGTLDTLMESVNQLLHNVICLTFKKMCHLVTLGDHPTSLSKETIRWTESKPLGCQSFDDQAAGQAWAKSSACSSTHVLSNAHATGLGINDLEDTAPKQNKGGSKPGLFNNPRLQSEFSCSHRTLGSTAKASPKEIYLKGIVGEDSKTPHHTLSRDGNEQRASTEIGKLPKTSKCCSGSQETEDGIVPSTQEKYTCATPINNEVQVNRSLLGDDLVFPAQSALQAKQSQIYGITDFAEDLAETVVSMATEIAAICLDNSNGKQPWFCAWKRGNEFLVAPNGSCRSLKRKKENSGSGSTVRKHKPPRLSEIKRKTDEHPELKEKLMNRVMDESMNLEDTPDAVSTFANEVAAKIMNLTEFSVVDGVWQAQSCSRNRFLGGDRWNRLKASSCESIPEEDSDARVYVNSLGLMSTLSQPVSRASSVSKQSSCESITDEFSRFMVKQMENEGRGFELLLDYYAGKNASSILSSAMLQACQKNDHLNVRPSCPSKQSSTESITEEFYRYMLRDIAKEGKDGTSSRRSSHDWTMGLLSPSARSPLCYRQSSMPDSRSPCSRLTVNAPVKANSLDGFAQNSPQDSLSIQPVSRTSSSGLCKSDSCLYRRSGTDQITNMLIHETWASSIEALMKKNKIIVDGGEAAGVSPGPVSGGSSLQVVKCANRLATSRGHRRPTLLVEESVDSQRKDAVPESNRSPVLSPSNTAPVTKLSGFDARREISSCHNAIVLKHPRQTLCSRDVPLIQIETDQKEEGLGEHEPILPQSGSLEETDGHKPEETIPDVARSGDTDLRTCQSCCDSLENRKESETEVLKEARPTDESPNPPSSSEESTGSWSHLANEDDNPDDTSSFLQLSERSMSELVEEKEILKEQQESIKERASGLPGRAASPQRSLLVINFDLEPERPDAELRATLQWIAASELGIPTIYFKKSQESRIEKFLDVVKLVHQKSWKVGDIFHAVVQYCKMHAEKKEGTPSLFDWLLELG", "length": 1694, "header": "tr|A0A9J7F7P6-1|A0A9J7JAN5_CRIGR Computationally mapped isoform of A-kinase anchor protein SPHKAP isoform X2 OS=Cricetulus griseus OX=10029 GN=Sphkap PE=3 SV=1 CANONICAL=A0A9J7JAN5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JAN5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JAN5/entry#A0A9J7JAN5-1", "sequence": { "sequence": "MWVVEPNPPTCLSAALPAKRHSQESSNVESPLMHEVLEPQQSSSSAAGSLAGSITACKKVLRSNSLLESTDYWLQNQRTPCQIGFVDDESENCASVCFVNLDVNKDACSTDHLQQKLLNVSPDLPKLINSMNVQQPKENEIVLLSGLASGNLQADFDVSQCPWLPDICLVQCARGNGSNSTNCIIFEINKFLIGLEVVQERQLHLETNVLKLEDDTNCSLSSIEEDFLTASEHLEEEIEVEEYRSGFETINLSANILEGKKLKEATQEGWDYHKEKSHCALGEKHIRKHRTPSMKTEGSKENIAESIALQSLNPSTRASGWKSEVAEENKQLATNPSYTENIKGETETSQMLYIPRNAYLSMVKKDGLSPCGVVTEQGSNHSDRGGMRNSLPVVQNGEATTGEYATNLAESVLQDAFIRLSQAQPTLPGESSVSFSVGSALIPGGCCTRDMVVPRSWDELPKIVIVQSPDGNDTAPEPSVSSRPEMEVSGETAGIFCGEGTSKPTQSALEVALACAATVIGTISSPQATERLTMEQESLISSYAQRGGEIQQTRVPQVLMGPSITEYSFPSALCGMTQVASAVAVCGLGEREEVTCPIAPRDLLPTSGASEETSSIGGLVKDRSTELGKEAIAGALLREAAWVLARPEAYSSIGDLLDSVNRSIIETTSKTQTLCKENIRMNELAQTLSNVILKHSIDEVHQRKTTAHPTDERQPYGTLDTLMESVNQLLHNVICLTFKKMCHLVTLGDHPTSLSKETIRWTESKPLGCQSFDDQAAGQAWAKSSACSSTHVLSNAHATGLGINDLEDTAPKQNKGGSKPGLFNNPRLQSEFSCSHRTLGSTAKASPKEIYLKGIVGEDSKTPHHTLSRDGNEQRASTEIGKLPKTSKCCSGSQETEDGIVPSTQEKYTCATPINNEVQVNRSLLGDDLVFPAQSALQAKQSQIYGITDFAEDLAETVVSMATEIAAICLDNSNGKQPWFCAWKRGNEFLVAPNGSCRSLKRKKENSGSGSTVRKHKPPRLSEIKRKTDEHPELKEKLMNRVMDESMNLEDTPDAVSTFANEVAAKIMNLTEFSVVDGVWQAQSCSRNRFLGGDRWNRLKASSCESIPEEDSDARVYVNSLGLMSTLSQPVSRASSVSKQSSCESITDEFSRFMVKQMENEGRGFELLLDYYAGKNASSILSSAMLQACQKNDHLNVRPSCPSKQSSTESITEEFYRYMLRDIAKEGKDGTSSRRSSHDWTMGLLSPSARSPLCYRQSSMPDSRSPCSRLTVNAPVKANSLDGFAQNSPQDSLSIQPVSRTSSSGLCKSDSCLYRRSGTDQITNMLIHETWASSIEALMKKNKIIVDGGEAAGVSPGPVSGGSSLQVVKCANRLATSRGHRRPTLLVEESVDSQRKDAVPESNRSPVLSPSNTAPVTKLSGFDARREISSCHNAIVLKHPRQTLCSRDVPLIQIETDQKEEGLGEHEPILPQSGSLEETDGHKPEETIPDVARSGDTDLRTCQSCCDSLENRKESETEVLKEARPTDESPNPPSSSEESTGSWSHLANEDDNPDDTSSFLQLSERSMSNGNSSATSSLGITDLDIYQESISSSPMINELVEEKEILKEQQESIKERASGLPGRAASPQRSLLVINFDLEPERPDAELRATLQWIAASELGIPTIYFKKSQESRIEKFLDVVKLVHQKSWKVGDIFHAVVQYCKMHAEKKEGTPSLFDWLLELG", "length": 1723, "header": "tr|A0A9J7JAN5-1|A0A9J7JAN5_CRIGR Isoform 1 of A-kinase anchor protein SPHKAP isoform X2 OS=Cricetulus griseus OX=10029 GN=Sphkap PE=3 SV=1 CANONICAL=A0A9J7JAN5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F7P6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7P6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F7P6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F7P6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100761697", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761697", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JAN5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JAN5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "protein kinase A binding", "id": "GO:0051018", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051018", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JAN5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JAN5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1069, "end_pos": 1071, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1176, "end_pos": 1178, "annotation": "n_glycosylation_sequon" }, { "start_pos": 119, "end_pos": 121, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1403, "end_pos": 1405, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1571, "end_pos": 1573, "annotation": "n_glycosylation_sequon" }, { "start_pos": 176, "end_pos": 178, "annotation": "n_glycosylation_sequon" }, { "start_pos": 179, "end_pos": 181, "annotation": "n_glycosylation_sequon" }, { "start_pos": 217, "end_pos": 219, "annotation": "n_glycosylation_sequon" }, { "start_pos": 251, "end_pos": 253, "annotation": "n_glycosylation_sequon" }, { "start_pos": 380, "end_pos": 382, "annotation": "n_glycosylation_sequon" }, { "start_pos": 472, "end_pos": 474, "annotation": "n_glycosylation_sequon" }, { "start_pos": 661, "end_pos": 663, "annotation": "n_glycosylation_sequon" }, { "start_pos": 921, "end_pos": 923, "annotation": "n_glycosylation_sequon" }, { "start_pos": 994, "end_pos": 996, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JAN5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JAN5" }, { "id": "PF05716", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05716" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "A-kinase anchor 110kDa C-terminal", "eco_id": "ECO_0000259", "start_pos": 1631, "end_pos": 1704, "start_aa": "Leu", "end_aa": "Met", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1069, "end_pos": 1071 }, { "start_pos": 1176, "end_pos": 1178 }, { "start_pos": 119, "end_pos": 121 }, { "start_pos": 1403, "end_pos": 1405 }, { "start_pos": 1571, "end_pos": 1573 }, { "start_pos": 176, "end_pos": 178 }, { "start_pos": 179, "end_pos": 181 }, { "start_pos": 217, "end_pos": 219 }, { "start_pos": 251, "end_pos": 253 }, { "start_pos": 380, "end_pos": 382 }, { "start_pos": 472, "end_pos": 474 }, { "start_pos": 661, "end_pos": 663 }, { "start_pos": 921, "end_pos": 923 }, { "start_pos": 994, "end_pos": 996 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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"o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7JEB5-1", "uniprot_ac": "A0A9J7JEB5", "uniprot_id": "A0A9J7JEB5_CRIGR", "mass": { "chemical_mass": 114510.0, "monoisotopic_mass": 114510.0 }, "refseq": { "ac": "XP_027253433", "name": "ankyrin repeat and MYND domain-containing protein 1 isoform X5", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253433" }, "gene_names": [ { "name": "Ankmy1", "type": "recommended", "evidence": [ { "id": "A0A9J7JEB5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEB5" } ] }, { "name": "Ankmy1", "type": "synonym", "evidence": [ { "id": "XP_027253433", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253433" } ] } ], "protein_names": [ { "name": "Ankyrin repeat and MYND domain-containing protein 1 isoform X5", "type": "synonym", "evidence": [ { "id": "A0A9J7JEB5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEB5/entry#names_and_taxonomy" } ] }, { "name": "ankyrin repeat and MYND domain-containing protein 1 isoform X5", "type": "synonym", "evidence": [ { "id": "XP_027253433", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253433" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027253433", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253433" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JEB5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEB5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ankmy1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEB5", "locus": {} } ], "crossref": [ { "id": "A0A9J7JEB5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JEB5", "database": "AlphaFoldDB", "categories": [] }, { "id": "100751434", "url": "https://www.ncbi.nlm.nih.gov/gene/100751434", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002893", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002893", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003409", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003409", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053064", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053064", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100751434", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751434", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JEB5", "url": "https://www.orthodb.org/?gene=A0A9J7JEB5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15897", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15897", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15897:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15897:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00023", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00023", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01753", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01753", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02493", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02493", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13606", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13606", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027253433", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253433", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F804", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F804", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F804-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F804-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FC70", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FC70", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FC70-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FC70-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FCD5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCD5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FCD5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCD5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FCY3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCY3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FCY3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCY3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GRU6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GRU6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GRU6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GRU6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GVY5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GVY5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GVY5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GVY5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JEB5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEB5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JEB5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEB5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEDFHSLVTLDSSGSRSLEGRSSQSPETESQESEKSYTFFTRRNSSSDPREDEEESEGSQRKQDLKETYIRITQGVQEWQDGSVYKGDFGLDMKLGFGEFSWPTGETYRGQFYRDHCHGVGTYTWPNGSSFTGLFYLSQREGYGTMFMKTKLFQGLYKDDQRFGPGIETYPDGSQDVGLWFREHLLKLGTEVPSSFSLLNYPEFLDFLTSSRGRISLSDEENKMWGLPEDQDPFFYEYKRFLLNDDITLPPEMHIYSTDNSHLPMTGSLRRELEGRIFMNEIPPFIEDEEPWLITNETPLLVKIQKQTYKFRNKSAHTSWNIAAILEGNRSCFGPSGPKELISREMILKAEEGDYDWIFGILRDNLACADVADSKGYTVLAAAAVHSHRNIVNLLLDYGADVNKRSDEGLTPLSMCFLQYYPSKSFHPNIAERTLPQELPKSLITPKISFLFGEPNVDYFYDMGVSTPVGEEYKSSPPLSSILEDALILGTVQSRESISWKSSVTHKRDTPSVKSVSSDIEKEPEDMAENMDASTLYSVNTDFESNMCLRNYSIHVSKDILEKSAQAYSSLLHIPALSDKGTVRKMAQTMAERRNRWLTITLLLHRGADPNLCQVPMQALFLAVKAGDVDGVRLLLESGARTDIQFPAQLLSLTPLHIAASLPGEEGVKITELLLHAVTDVDAKAADQDDLYKTGKVDLLPSSLKLNNETGPPKSYYNVSTFIPEEGGRTPLHVACEREDNKKCARDIVRLLLSHRANPNMLWSGHSPLSLSIASGNDLVVKELLSQGADPNLPLTKGLGTALCVVCDLAYEQQRSTENKIALIDRLISYGADILKPVALVQGERTAVGTAVDYGYFKFYQDRKIAHCPFHALMPAEREIFLARKRLLEYMGLQLRRAVLNKENQLDMKSLYLSKRAELSPSHRLKRRSSSILKTSPTEKQHLPFYKFCYQCGRSIGVRLTPCPRCYGILTCSKYCKTKAWTEFHKKDCNDIMILMPHLEESAWRLSESQEGD", "length": 1013, "header": "tr|A0A9J7JEB5-1|A0A9J7JEB5_CRIGR Isoform 1 of Ankyrin repeat and MYND domain-containing protein 1 isoform X5 OS=Cricetulus griseus OX=10029 GN=Ankmy1 PE=4 SV=1 CANONICAL=A0A9J7JEB5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F804-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEB5/entry#A0A9J7F804-1", "sequence": { "sequence": "MKLGFGEFSWPTGETYRGQFYRDHCHGVGTYTWPNGSSFTGLFYLSQREGYGTMFMKTKLFQGLYKDDQRFGPGIETYPDGSQDVGLWFREHLLKLGTEVPSSFSLLNYPEFLDFLTSSRGRISLSDEENKMWGLPEDQDPFFYEYKRFLLNDDITLPPEMHIYSTDNSHLPMTGSLRRELEGRIFMNEIPPFIEDEEPWLITNETPLLVKIQKQTYKFRNKSAHTSWNIAAILEGNRSCFGPSGPKELISREMILKAEEGDYDWIFGILRDNLACADVADSKGYTVLAAAAVHSHRNIVNLLLDYGADVNKRSDEGLTPLSMCFLQYYPSKSFHPNIAERTLPQELPKSLITPKISFLFGEPNVDYFYDMGVSTPVGEEYKSSPPLSSILEDALILGTVQSRESISWKSSVTHKRDTPSVKSVSSDIEKEPEDMAENMDASTLYSVNTDFESNMCLRNYSIHVSKDILEKSAQAYSSLLHIPALSDKGTVRKMAQTMAERRNRWLTITLLLHRGADPNLCQVPMQALFLAVKAGDVDGVRLLLESGARTDIQFPAQLLSLTPLHIAASLPGEEGVKITELLLHAVTDVDAKAADQDDLYKTGKVDLLPSSLKLNNETGPPKSYYNVSTFIPEEGGRTPLHVACEREDNKKCARDIVRLLLSHRANPNMLWSGHSPLSLSIASGNDLVVKELLSQGADPNLPLTKGLGTALCVVCDLAYEQQRSTENKIALIDRLISYGADILKPVALVQGERTAVGTAVDYGYFKFYQDRKIAHCPFHALMPAEREIFLARKRLLEYMGLQLRRAVLNKENQLDMKSLYLSKRAELSPSHRLKRRSSSILKTSPTEKQHLPFYKFCYQCGRSIGVRLTPCPRCYGILTCSKYCKTKAWTEFHKKDCNDIMILMPHLEESAWRLSESQEGD", "length": 921, "header": "tr|A0A9J7F804-1|A0A9J7JEB5_CRIGR Computationally mapped isoform of Ankyrin repeat and MYND domain-containing protein 1 isoform X5 OS=Cricetulus griseus OX=10029 GN=Ankmy1 PE=4 SV=1 CANONICAL=A0A9J7JEB5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FC70-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEB5/entry#A0A9J7FC70-1", "sequence": { "sequence": "MEDFHSLVTLDSSGSRSLEGRSSQSPETESQESEKSYTFFTRRNSSSDPREDEEESEGSQRKQDLKETYIRITQGVQEWQDGSVYKGDFGLDMKLGFGEFSWPTGETYRGQFYRDHCHGVGTYTWPNGSSFTGLFYLSQREGYGTMFMKTKLFQGLYKDDQRFGPGIETYPDGSQDVGLWFREHLLKLGTEVPSSFSLLNYPEFLDFLTSSRGRISLSDEENKMWGLPEDQDPFFYEYKRFLLNDDITLPPEMHIYSTDNSHLPMTGSLRRELEGRIFMNEIPPFIEDEEPWLITNETPLLVKIQKQTYKFRNKSAHTSWNIAAILEGNRSCFGPSGPKELISREMILKAEEGDYDWIFGILRDNLACADVADSKGYTVLAAAAVHSHRNIVNLLLDYGADVNKRSDEGLTPLSMCFLQYYPSKSFHPNIAERTLPQELPKSLITPKISFLFGEPNVDYFYDMGVSTPVGEEYKSSPPLSSILEDALILGTVQSRESISWKSSVTHKRDTPSVKSVSSDIEKEPEDMAENMDASTLYSVNTDFESNMCLRNYSIHVSKDILEKSAQAYSSLLHIPALSDKGTVRKMAQTMAERRNRWLTITLLLHRGADPNLCQVPMQALFLAVKAGDVDGVRLLLESGARTDIQFPAQLLSLTPLHIAASLPGEEGVKITELLLHAVTDVDAKAADQDDLYKTGKVDLLPSSLKLNNETGPPKSYYNVSTFIPEEGGRTPLHVACEREDNKKCARDIVRLLLSHRANPNMLWSGHSPLSLSIASGNDLVVKELLSQGADPNLPLTKGLGTALCVVCDLAYEQQRSTENKIALIDRLISYGADILKPVALVQGERTAVGTAVDYGYFKFYQDRKIAHCPFHALMPAEREIFLARKRLLEYMGLQLRRAVLNKENQLDMKSLYLSKRELSPSHRLKRRSSSILKTSPTEKQHLPFYKFCYQCGRSIGVRLTPCPRCYGILTCSKYCKTKAWTEFHKKDCNDIMILMPHLEESAWRLSESQEGD", "length": 1012, "header": "tr|A0A9J7FC70-1|A0A9J7JEB5_CRIGR Computationally mapped isoform of Ankyrin repeat and MYND domain-containing protein 1 isoform X5 OS=Cricetulus griseus OX=10029 GN=Ankmy1 PE=4 SV=1 CANONICAL=A0A9J7JEB5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FCD5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEB5/entry#A0A9J7FCD5-1", "sequence": { "sequence": "MKLGFGEFSWPTGETYRGQFYRDHCHGVGTYTWPNGSSFTGLFYLSQREGYGTMFMKTKLFQGLYKDDQRFGPGIETYPDGSQDVGLWFREHLLKLGTEVPSSFSLLNYPEFLDFLTSSRGRISLSDEENKMWGLPEDQDPFFYEYKRFLLNDDITLPPEMHIYSTDNSHLPMTGSLRRELEGRIFMNEIPPFIEDEEPWLITNETPLLVKIQKQTYKFRNKSAHTSWNIAAILEGNRSCFGPSGPKELISREMILKAEEGDYDWIFGILRDNLACADVADSKGYTVLAAAAVHSHRNIVNLLLDYGADVNKRSDEGLTPLSMCFLQYYPSKSFHPNIAERTLPQELPKSLITPKISFLFGEPNVDYFYDMGVSTPVGEEYKSSPPLSSILEDALILGTVQSRESISWKSSVTHKRDTPSVKSVSSDIEKEPEDMAENMDASTLYSVNTDFESNMCLRNYSIHVSKDILEKSAQAYSSLLHIPALSDKGTVRKMAQTMAERRNRWLTITLLLHRGADPNLCQVPMQALFLAVKAGDVDGVRLLLESGARTDIQFPAQLLSLTPLHIAASLPGEEGVKITELLLHAVTDVDAKAADQDDLYKTGKVDLLPSSLKLNNETGPPKSYYNVSTFIPEEGGRTPLHVACEREDNKKCARDIVRLLLSHRANPNMLWSGHSPLSLSIASGNDLVVKELLSQGADPNLPLTKGLGTALCVVCDLAYEQQRSTENKIALIDRLISYGADILKPVALVQGERTAVGTAVDYGYFKFYQDRKIAHCPFHALMPAEREIFLARKRLLEYMGLQLRRAVLNKENQLDMKSLYLSKRGADSDLSTAELSPSHRLKRRSSSILKTSPTEKQHLPFYKFCYQCGRSIGVRLTPCPRCYGILTCSKYCKTKAWTEFHKKDCNDIMILMPHLEESAWRLSESQEGD", "length": 929, "header": "tr|A0A9J7FCD5-1|A0A9J7JEB5_CRIGR Computationally mapped isoform of Ankyrin repeat and MYND domain-containing protein 1 isoform X5 OS=Cricetulus griseus OX=10029 GN=Ankmy1 PE=4 SV=1 CANONICAL=A0A9J7JEB5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FCY3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEB5/entry#A0A9J7FCY3-1", "sequence": { "sequence": "MKLGFGEFSWPTGETYRGQFYRDHCHGVGTYTWPNGSSFTGLFYLSQREGYGTMFMKTKLFQGLYKDDQRFGPGIETYPDGSQDVGLWFREHLLKLGTEVPSSFSLLNYPEFLDFLTSSRGRISLSDEENKMWGLPEDQDPFFYEYKRFLLNDDITLPPEMHIYSTDNSHLPMTGSLRRELEGRIFMNEIPPFIEDEEPWLITNETPLLVKIQKQTYKFRNKSAHTSWNIAAILEGNRSCFGPSGPKELISREMILKAEEGDYDWIFGILRDNLACADVADSKGYTVLAAAAVHSHRNIVNLLLDYGADVNKRSDEGLTPLSMCFLQYYPSKSFHPNIAERTLPQELPKSLITPKISFLFGEPNVDYFYDMGVSTPVGEEYKSSPPLSSILEDALILGTVQSRESISWKSSVTHKRDTPSVKSVSSDIEKEPEDMAENMDASTLYSVNTDFESNMCLRNYSIHVSKDILEKSAQAYSSLLHIPALSDKGTVRKMAQTMAERRNRWLTITLLLHRGADPNLCQVPMQALFLAVKAGDVDGVRLLLESGARTDIQFPAQLLSLTPLHIAASLPGEEGVKITELLLHAVTDVDAKAADQDDLYKTGKVDLLPSSLKLNNETGPPKSYYNVSTFIPEEGGRTPLHVACEREDNKKCARDIVRLLLSHRANPNMLWSGHSPLSLSIASGNDLVVKELLSQGADPNLPLTKGLGTALCVVCDLAYEQQRSTENKIALIDRLISYGADILKPVALVQGERTAVGTAVDYGYFKFYQDRKIAHCPFHALMPAEREIFLARKRLLEYMGLQLRRAVLNKENQLDMKSLYLSKRELSPSHRLKRRSSSILKTSPTEKQHLPFYKFCYQCGRSIGVRLTPCPRCYGILTCSKYCKTKAWTEFHKKDCNDIMILMPHLEESAWRLSESQEGD", "length": 920, "header": "tr|A0A9J7FCY3-1|A0A9J7JEB5_CRIGR Computationally mapped isoform of Ankyrin repeat and MYND domain-containing protein 1 isoform X5 OS=Cricetulus griseus OX=10029 GN=Ankmy1 PE=4 SV=1 CANONICAL=A0A9J7JEB5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GRU6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEB5/entry#A0A9J7GRU6-1", "sequence": { "sequence": "MKLGFGEFSWPTGETYRGQFYRDHCHGVGTYTWPNGSSFTGLFYLSQREGYGTMFMKTKLFQGLYKDDQRFGPGIETYPDGSQDVGLWFREHLLKLGTEVPSSFSLLNYPEFLDFLTSSRGRISLSDEENKMWGLPEDQDPFFYEYKRFLLNDDITLPPEMHIYSTDNSHLPMTGSLRRELEGRIFMNEIPPFIEDEEPWLITNETPLLVKIQKQTYKFRNKSAHTSWNIAAILEGNRSCFGPSGPKELISREMILKAEEGDYDWIFGILRDNLACADVADSKGYTVLAAAAVHSHRNIVNLLLDYGADVNKRSDEGLTPLSMCFLQYYPSKSFHPNIAERTLPQELPKSLITPKISFLFGEPNVDYFYDMGVSTPVGEEYKSSPPLSSILEDALILGTVQSRESISWKSSVTHKRDTPSVKSVSSDIEKEPEDMAENMDASTLYSVNTDFESNMCLRNYSIHVSKDILEKSAQAYSSLLHIPALSDKGTVRKMAQTMAERRNRWLTITLLLHRGADPNLCQVPMQALFLAVKAGDVDGVRLLLESGARTDIQFPAQLLSLTPLHIAASLPGEEGVKITELLLHAVTDVDAKAADQDDLYKTGKVDLLPSSLKLNNETGPPKSYYNVSTFIPEEGGRTPLHVACEREDNKKIDRLISYGADILKPVALVQGERTAVGTAVDYGYFKFYQDRKIAHCPFHALMPAEREIFLARKRLLEYMGLQLRRAVLNKENQLDMKSLYLSKRGADSDLSTAELSPSHRLKRRSSSILKTSPTEKQHLPFYKFCYQCGRSIGVRLTPCPRCYGILTCSKYCKTKAWTEFHKKDCNDIMILMPHLEESAWRLSESQEGD", "length": 849, "header": "tr|A0A9J7GRU6-1|A0A9J7JEB5_CRIGR Computationally mapped isoform of Ankyrin repeat and MYND domain-containing protein 1 isoform X5 OS=Cricetulus griseus OX=10029 GN=Ankmy1 PE=4 SV=1 CANONICAL=A0A9J7JEB5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GVY5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEB5/entry#A0A9J7GVY5-1", "sequence": { "sequence": "MKLGFGEFSWPTGETYRGQFYRDHCHGVGTYTWPNGSSFTGLFYLSQREGYGTMFMKTKLFQGLYKDDQRFGPGIETYPDGSQDVGLWFREHLLKLGTEVPSSFSLLNYPEFLDFLTSSRGRISLSDEENKMWGLPEDQDPFFYEYKRFLLNDDITLPPEMHIYSTDNSHLPMTGSLRRELEGRIFMNEIPPFIEDEEPWLITNETPLLVKIQKQTYKFRNKSAHTSWNIAAILEGNRSCFGPSGPKELISREMILKAEEGDYDWIFGILRDNLACADVADSKGYTVLAAAAVHSHRNIVNLLLDYGADVNKRSDEGLTPLSMCFLQYYPSKSFHPNIAERTLPQELPKSLITPKISFLFGEPNVDYFYDMGVSTPVGEEYKSSPPLSSILEDALILGTVQSRESISWKSSVTHKRDTPSVKSVSSDIEKEPEDMAENMDASTLYSVNTDFESNMCLRNYSIHVSKDILEKSAQAYSSLLHIPALSDKGTVRKMAQTMAERRNRWLTITLLLHRGADPNLCQVPMQALFLAVKAGDVDGVRLLLESGARTDIQFPAQLLSLTPLHIAASLPGEEGVKITELLLHAVTDVDAKAADQDDLYKTGKVDLLPSSLKLNNETGPPKSYYNVSTFIPEEGGRTPLHVACEREDNKKIDRLISYGADILKPVALVQGERTAVGTAVDYGYFKFYQDRKIAHCPFHALMPAEREIFLARKRLLEYMGLQLRRAVLNKENQLDMKSLYLSKRAELSPSHRLKRRSSSILKTSPTEKQHLPFYKFCYQCGRSIGVRLTPCPRCYGILTCSKYCKTKAWTEFHKKDCNDIMILMPHLEESAWRLSESQEGD", "length": 841, "header": "tr|A0A9J7GVY5-1|A0A9J7JEB5_CRIGR Computationally mapped isoform of Ankyrin repeat and MYND domain-containing protein 1 isoform X5 OS=Cricetulus griseus OX=10029 GN=Ankmy1 PE=4 SV=1 CANONICAL=A0A9J7JEB5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JEB5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEB5/entry#A0A9J7JEB5-1", "sequence": { "sequence": "MEDFHSLVTLDSSGSRSLEGRSSQSPETESQESEKSYTFFTRRNSSSDPREDEEESEGSQRKQDLKETYIRITQGVQEWQDGSVYKGDFGLDMKLGFGEFSWPTGETYRGQFYRDHCHGVGTYTWPNGSSFTGLFYLSQREGYGTMFMKTKLFQGLYKDDQRFGPGIETYPDGSQDVGLWFREHLLKLGTEVPSSFSLLNYPEFLDFLTSSRGRISLSDEENKMWGLPEDQDPFFYEYKRFLLNDDITLPPEMHIYSTDNSHLPMTGSLRRELEGRIFMNEIPPFIEDEEPWLITNETPLLVKIQKQTYKFRNKSAHTSWNIAAILEGNRSCFGPSGPKELISREMILKAEEGDYDWIFGILRDNLACADVADSKGYTVLAAAAVHSHRNIVNLLLDYGADVNKRSDEGLTPLSMCFLQYYPSKSFHPNIAERTLPQELPKSLITPKISFLFGEPNVDYFYDMGVSTPVGEEYKSSPPLSSILEDALILGTVQSRESISWKSSVTHKRDTPSVKSVSSDIEKEPEDMAENMDASTLYSVNTDFESNMCLRNYSIHVSKDILEKSAQAYSSLLHIPALSDKGTVRKMAQTMAERRNRWLTITLLLHRGADPNLCQVPMQALFLAVKAGDVDGVRLLLESGARTDIQFPAQLLSLTPLHIAASLPGEEGVKITELLLHAVTDVDAKAADQDDLYKTGKVDLLPSSLKLNNETGPPKSYYNVSTFIPEEGGRTPLHVACEREDNKKCARDIVRLLLSHRANPNMLWSGHSPLSLSIASGNDLVVKELLSQGADPNLPLTKGLGTALCVVCDLAYEQQRSTENKIALIDRLISYGADILKPVALVQGERTAVGTAVDYGYFKFYQDRKIAHCPFHALMPAEREIFLARKRLLEYMGLQLRRAVLNKENQLDMKSLYLSKRAELSPSHRLKRRSSSILKTSPTEKQHLPFYKFCYQCGRSIGVRLTPCPRCYGILTCSKYCKTKAWTEFHKKDCNDIMILMPHLEESAWRLSESQEGD", "length": 1013, "header": "tr|A0A9J7JEB5-1|A0A9J7JEB5_CRIGR Isoform 1 of Ankyrin repeat and MYND domain-containing protein 1 isoform X5 OS=Cricetulus griseus OX=10029 GN=Ankmy1 PE=4 SV=1 CANONICAL=A0A9J7JEB5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F804", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F804" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F804", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F804" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100751434", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751434", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JEB5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEB5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 127, "end_pos": 129, "annotation": "n_glycosylation_sequon" }, { "start_pos": 296, "end_pos": 298, 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{ "id": "100755093", "url": "https://www.ncbi.nlm.nih.gov/gene/100755093", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001849", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011072", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011072", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012966", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012966", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051364", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051364", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100755093", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755093", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JCL0", "url": "https://www.orthodb.org/?gene=A0A9J7JCL0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21538", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21538", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21538:SF21", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21538:SF21", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00169", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00169", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08174", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08174", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027250861", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250861", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F8N7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8N7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F8N7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8N7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F8V4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8V4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F8V4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8V4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JCL0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCL0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JCL0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCL0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDGRLQRGLPAQQDCNIREKIDLEIRIREGIWKLLSLSTKKDQVLHAVKNLMVCNARIEAYTAELRKSEEQIASQTGRRDGSCESREQRACRGKIALSDIRIPLMWKDSDHFSNKECTQRYAIFCLFRMGAEVFDTDMVIVDQTITDICFDNITLFSEAGPDFRIKIEVYSCSAEDSSIINTPKKLAKKLKTSISKAAGRKISSALQEETPETYLLVSSVSGAKYHLLAHTTLTLESAGDCFKTHNLSVHGDEDCSFWLPLYGNVCCRLVAQPACMAEDAFAGFLNEQQTVKGLVGWRRLYCALRGGKLHCYYGPEEIEAKVEPTLVVSIDKETRIQTMDKDAKKMHHFCVTNTVAGRTVPHIFAADSLEDLQEWMGAIRQHLFDLSQWKHCCEELMKIEIMSPRKPPLFLTKEATSVYYDMSIDSPVKLESLTEIIQKKIGETNGQVLISQDEASMPPPWAAVFDGNHEMVIQKKVLSPTGKPAPDGKRKKRRAPLPPTDQPPFSVKTQGGTDQSKGSEAQASVSRASPSDSRLSSSMHHFQKPVAAPRKLLSARKNSSADDEHTDTKTSFEGKPVPAPRQKSIRDILDPRSWLQAQV", "length": 599, "header": "tr|A0A9J7JCL0-1|A0A9J7JCL0_CRIGR Isoform 1 of Rhotekin-2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Rtkn2 PE=4 SV=1 CANONICAL=A0A9J7JCL0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F8N7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCL0/entry#A0A9J7F8N7-1", "sequence": { "sequence": "MWKDSDHFSNKECTQRYAIFCLFRMGAEVFDTDMVIVDQTITDICFDNITLFSEAGPDFRIKIEVYSCSAEDSSIINTPKKLAKKLKTSISKAAGRKISSALQEETPETYLLVSSVSGAKYHLLAHTTLTLESAGDCFKTHNLSVHGDEDCSFWLPLYGNVCCRLVAQPACMAEDAFAGFLNEQQTVKGLVGWRRLYCALRGGKLHCYYGPEEIEAKVEPTLVVSIDKETRIQTMDKDAKKMHHFCVTNTVAGRTVPHIFAADSLEDLQEWMGAIRQHLFDLSQWKHCCEELMKIEIMSPRKPPLFLTKEATSVYYDMSIDSPVKLESLTEIIQKKIGETNGQVLISQDEASMPPPWAAVFDGNHEMVIQKKVLSPTGKPAPDGKRKKRRAPLPPTDQPPFSVKTQGGTDQSKGSEAQASVSRASPSDSRLSSSMHHFQKPVAAPRKLLSARKNSSADDEHTDTKTSFEGKPVPAPRQKSIRDILDPRSWLQAQV", "length": 495, "header": "tr|A0A9J7F8N7-1|A0A9J7JCL0_CRIGR Computationally mapped isoform of Rhotekin-2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Rtkn2 PE=4 SV=1 CANONICAL=A0A9J7JCL0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F8V4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCL0/entry#A0A9J7F8V4-1", "sequence": { "sequence": "MDGRLQRGLPAQQDCNIREKIDLEIRIREGIWKLLSLSTKKDQVLHAVKNLMVCNARIEAYTAELRKSEEQIASQTGRRDGSCESREQRACRGKIALSDIRIPLMWKDSDHFSNKECTQRYAIFCLFRMGAEVFDTDMVIVDQTITDICFDNITLFEAGPDFRIKIEVYSCSAEDSSIINTPKKLAKKLKTSISKAAGRKISSALQEETPETYLLVSSVSGAKYHLLAHTTLTLESAGDCFKTHNLSVHGDEDCSFWLPLYGNVCCRLVAQPACMAEDAFAGFLNEQQTVKGLVGWRRLYCALRGGKLHCYYGPEEIEAKVEPTLVVSIDKETRIQTMDKDAKKMHHFCVTNTVAGRTVPHIFAADSLEDLQEWMGAIRQHLFDLSQWKHCCEELMKIEIMSPRKPPLFLTKEATSVYYDMSIDSPVKLESLTEIIQKKIGETNGQVLISQDEASMPPPWAAVFDGNHEMVIQKKVLSPTGKPAPDGKRKKRRAPLPPTDQPPFSVKTQGGTDQSKGSEAQASVSRASPSDSRLSSSMHHFQKPVAAPRKLLSARKNSSADDEHTDTKTSFEGKPVPAPRQKSIRDILDPRSWLQAQV", "length": 598, "header": "tr|A0A9J7F8V4-1|A0A9J7JCL0_CRIGR Computationally mapped isoform of Rhotekin-2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Rtkn2 PE=4 SV=1 CANONICAL=A0A9J7JCL0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JCL0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCL0/entry#A0A9J7JCL0-1", "sequence": { "sequence": "MDGRLQRGLPAQQDCNIREKIDLEIRIREGIWKLLSLSTKKDQVLHAVKNLMVCNARIEAYTAELRKSEEQIASQTGRRDGSCESREQRACRGKIALSDIRIPLMWKDSDHFSNKECTQRYAIFCLFRMGAEVFDTDMVIVDQTITDICFDNITLFSEAGPDFRIKIEVYSCSAEDSSIINTPKKLAKKLKTSISKAAGRKISSALQEETPETYLLVSSVSGAKYHLLAHTTLTLESAGDCFKTHNLSVHGDEDCSFWLPLYGNVCCRLVAQPACMAEDAFAGFLNEQQTVKGLVGWRRLYCALRGGKLHCYYGPEEIEAKVEPTLVVSIDKETRIQTMDKDAKKMHHFCVTNTVAGRTVPHIFAADSLEDLQEWMGAIRQHLFDLSQWKHCCEELMKIEIMSPRKPPLFLTKEATSVYYDMSIDSPVKLESLTEIIQKKIGETNGQVLISQDEASMPPPWAAVFDGNHEMVIQKKVLSPTGKPAPDGKRKKRRAPLPPTDQPPFSVKTQGGTDQSKGSEAQASVSRASPSDSRLSSSMHHFQKPVAAPRKLLSARKNSSADDEHTDTKTSFEGKPVPAPRQKSIRDILDPRSWLQAQV", "length": 599, "header": "tr|A0A9J7JCL0-1|A0A9J7JCL0_CRIGR Isoform 1 of Rhotekin-2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Rtkn2 PE=4 SV=1 CANONICAL=A0A9J7JCL0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F8N7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8N7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F8N7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8N7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100755093", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755093", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "positive regulation of cell population proliferation", "id": "GO:0008284", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008284", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JCL0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCL0" } ], "pmid": "" }, { "name": "hemopoiesis", "id": "GO:0030097", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030097", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JCL0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCL0" } ], "pmid": "" }, { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JCL0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCL0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 152, "end_pos": 154, "annotation": "n_glycosylation_sequon" }, { "start_pos": 246, "end_pos": 248, "annotation": "n_glycosylation_sequon" }, { "start_pos": 558, "end_pos": 560, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JCL0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCL0" }, { "id": "PS50003", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50003" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PH", "eco_id": "ECO_0000259", "start_pos": 278, "end_pos": 384, "start_aa": "Glu", "end_aa": "Phe", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7JCL0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCL0" }, { "id": "PS51860", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51860" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "REM-1", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 74, "start_aa": "Met", "end_aa": "Ser", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 152, "end_pos": 154 }, { "start_pos": 246, "end_pos": 248 }, { "start_pos": 558, "end_pos": 560 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7JCL6-1", "uniprot_ac": "A0A9J7JCL6", "uniprot_id": "A0A9J7JCL6_CRIGR", "mass": { "chemical_mass": 67441.0, "monoisotopic_mass": 67441.0 }, "refseq": { "ac": "XP_027250908", "name": "protein FAM13C isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250908" }, "gene_names": [ { "name": "Fam13c", "type": "recommended", "evidence": [ { "id": "A0A9J7JCL6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCL6" } ] }, { "name": "Fam13c", "type": "synonym", "evidence": [ { "id": "XP_027250908", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250908" } ] } ], "protein_names": [ { "name": "Protein FAM13C isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7JCL6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCL6/entry#names_and_taxonomy" } ] }, { "name": "protein FAM13C isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027250908", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250908" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027250908", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250908" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JCL6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCL6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Fam13c", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCL6", "locus": {} } ], "crossref": [ { "id": "A0A9J7JCL6", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JCL6", "database": "AlphaFoldDB", "categories": [] }, { "id": "100761386", "url": "https://www.ncbi.nlm.nih.gov/gene/100761386", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR039102", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039102", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR059029", "url": "https://www.ebi.ac.uk/interpro/entry/IPR059029", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100761386", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761386", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JCL6", "url": "https://www.orthodb.org/?gene=A0A9J7JCL6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15904", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15904", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15904:SF19", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15904:SF19", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF26116", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26116", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027250908", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250908", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F8W5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8W5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F8W5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8W5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JCL6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCL6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JCL6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCL6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFSCFCFSLQDNSFGSAAVTECEEDTVSLHEDEDNCSGLRDENNKENYPQVGARIDELAPPSHEAQQHVEQTLLVDGVLRPSMGNFKSRKPKSILRAESGRNHGESQDAEHVVPSQAECQGRAGTPAHESPQNSIVRSQETVRLQPRVDQRAAIWPKDAFGTQQDFHENSLLKLQALESDLCSAFLTNQEEDGQVHGVKDPAPASTQSVPADGGVDSAAPMPTHKDGQSDADGTPEDLQSAGTSRLLYHITDGDNPLLSPRCSIFSQSQRFNLDPESAPSPPSSQQFMMPRSSSRCSGGDGKEPQTITQLTKHIQSLKRKIRKFEEKFEQEKKYRPSHGDKTSNPEVLKWMNDLAKGRKQLKELKLKLSEEQGSTPKGPRRNLSCEQPPVPRENGKLEAVGPEPSSSGEETSDAVMMEKRDQIAPQDDVKVTKQDKNLIKPLYDRCRIIKQILSTPSLIPTIQEEEDSDEDCPQRSQPPSLPDPVSRLPVGDHLTYSETEPMRTLLPDEKKEGKQPALSMSNLHEATMPVLLDHLRETRADKKRLRKALREFEEQFFKQTGRSPQKEDRMPMADEYYEYKHIKAKLRLLEVLISKQDVAKTI", "length": 602, "header": "tr|A0A9J7JCL6-1|A0A9J7JCL6_CRIGR Isoform 1 of Protein FAM13C isoform X2 OS=Cricetulus griseus OX=10029 GN=Fam13c PE=3 SV=1 CANONICAL=A0A9J7JCL6-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F8W5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCL6/entry#A0A9J7F8W5-1", "sequence": { "sequence": "MFSCFCFSLQDNSFGSAAVTECEEDTVSLHEDEDNCSGLRDENNKENYPQVGARIDELAPPSHEAQQHVEQTLLVDGVLRPSMGNFKSRKPKSILRAESGRNHGESQDAEHVVPSQAECQGRAGTPAHESPQNSIVRSQETVRLQPRVDQRAAIWPKDAFGTQQDFHENSLLKLQALESDLCSAFLTNQEEDGQVHGVKDPAPASTQSVPADGGVDSAAPMPTHKDGQSDADGTPEDLQSAGTSRLLYHITDGDNPLLSPRCSIFSQSQRFNLDPESAPSPPSSQQFMMPRSSSRCSGGDGKEPQTITQLTKHIQSLKRKIRKFEEKFEQEKKYRPSHGDKTSNPEVLKWMNDLAKGRKQLKELKLKLSEEQGSTPKGPRRNLSCEQPPVPRENGKLEAVGPEPSSSGEETSDAVMMEKRDQIAPQDDVKVTKQDKNLIKPLYDRCRIIKQILSTPSLIPTIEEEDSDEDCPQRSQPPSLPDPVSRLPVGDHLTYSETEPMRTLLPDEKKEGKQPALSMSNLHEATMPVLLDHLRETRADKKRLRKALREFEEQFFKQTGRSPQKEDRMPMADEYYEYKHIKAKLRLLEVLISKQDVAKTI", "length": 601, "header": "tr|A0A9J7F8W5-1|A0A9J7JCL6_CRIGR Computationally mapped isoform of Protein FAM13C isoform X2 OS=Cricetulus griseus OX=10029 GN=Fam13c PE=3 SV=1 CANONICAL=A0A9J7JCL6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JCL6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCL6/entry#A0A9J7JCL6-1", "sequence": { "sequence": "MFSCFCFSLQDNSFGSAAVTECEEDTVSLHEDEDNCSGLRDENNKENYPQVGARIDELAPPSHEAQQHVEQTLLVDGVLRPSMGNFKSRKPKSILRAESGRNHGESQDAEHVVPSQAECQGRAGTPAHESPQNSIVRSQETVRLQPRVDQRAAIWPKDAFGTQQDFHENSLLKLQALESDLCSAFLTNQEEDGQVHGVKDPAPASTQSVPADGGVDSAAPMPTHKDGQSDADGTPEDLQSAGTSRLLYHITDGDNPLLSPRCSIFSQSQRFNLDPESAPSPPSSQQFMMPRSSSRCSGGDGKEPQTITQLTKHIQSLKRKIRKFEEKFEQEKKYRPSHGDKTSNPEVLKWMNDLAKGRKQLKELKLKLSEEQGSTPKGPRRNLSCEQPPVPRENGKLEAVGPEPSSSGEETSDAVMMEKRDQIAPQDDVKVTKQDKNLIKPLYDRCRIIKQILSTPSLIPTIQEEEDSDEDCPQRSQPPSLPDPVSRLPVGDHLTYSETEPMRTLLPDEKKEGKQPALSMSNLHEATMPVLLDHLRETRADKKRLRKALREFEEQFFKQTGRSPQKEDRMPMADEYYEYKHIKAKLRLLEVLISKQDVAKTI", "length": 602, "header": "tr|A0A9J7JCL6-1|A0A9J7JCL6_CRIGR Isoform 1 of Protein FAM13C isoform X2 OS=Cricetulus griseus OX=10029 GN=Fam13c PE=3 SV=1 CANONICAL=A0A9J7JCL6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F8W5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8W5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F8W5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F8W5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100761386", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761386", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 35, "end_pos": 37, "annotation": "n_glycosylation_sequon" }, { "start_pos": 382, "end_pos": 384, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JCL6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCL6" }, { "id": "PF26116", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26116" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "FAM13A-like", "eco_id": "ECO_0000259", "start_pos": 528, "end_pos": 596, "start_aa": "Met", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 35, "end_pos": 37 }, { "start_pos": 382, "end_pos": 384 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7JCN4-1", "uniprot_ac": "A0A9J7JCN4", "uniprot_id": "A0A9J7JCN4_CRIGR", "mass": { "chemical_mass": 73587.0, "monoisotopic_mass": 73587.0 }, "refseq": { "ac": "XP_027250995", "name": "leucine-rich repeat and IQ domain-containing protein 3 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250995" }, "gene_names": [ { "name": "Lrriq3", "type": "recommended", "evidence": [ { "id": "A0A9J7JCN4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCN4" } ] }, { "name": "Lrriq3", "type": "synonym", "evidence": [ { "id": "XP_027250995", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250995" } ] } ], "protein_names": [ { "name": "Leucine-rich repeat and IQ domain-containing protein 3 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7JCN4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCN4/entry#names_and_taxonomy" } ] }, { "name": "leucine-rich repeat and IQ domain-containing protein 3 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027250995", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250995" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027250995", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250995" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JCN4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCN4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Lrriq3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCN4", "locus": {} } ], "crossref": [ { "id": "100769397", "url": "https://www.ncbi.nlm.nih.gov/gene/100769397", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052859", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052859", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100769397", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769397", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JCN4", "url": "https://www.orthodb.org/?gene=A0A9J7JCN4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46723", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46723", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46723:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46723:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_027250995", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250995", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F901", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F901", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F901-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F901-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JCN4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCN4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JCN4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCN4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFHGTITKELTSHEEWNHYNENIIENKKDFVFVKYNGLHLKSMENLQSCISLKVCIFSNNFITDIQPLQCCIKLIKLDLHGNQIKILPDRNFWIGLKNLKLLYLHDNSFCKLKNICVLAACASLIGLTMFDCPVSLKKGYRHVLVNSIWPLKALDHHVISDEEIIQNWHLPERFKAFNPRLFFKFCPALIKGSTYEDEINNIKHVISRINEILAHNSPVLIIQRWIRGFIVRKRLSPYFTHKRHHEKMIRVLETKWICIGRRSEDKILDDIFLFKPNINGKVAHWKQMRCTPADFKHSADYRKHISCLSYELKSKDIDRKPQTPSHPIQKGQKESKADSEDEEMDISFRVSTLKIPLYSSPSLKYGSVLKEMKPDYFSDYLQPIPGTHPKPPIKRETLEELKKRKEFLASQRAGMKLFMFNDLDKYHSDRKHQEKQTEKSAVVVLAQAARSRARYSIRESLRKKTILAQKLMERDNEAIQKGLRQIWKEKLAYLEKVRERKTMFLAEKKLNALDHSLVQNTNNERTLLLKGIFQVDKMKKEMEELRQKHLIVVEQWRTEKFKQSMLRHMKEMRAEEIRKRHSEEKFVIDTLIFQKALARLEEAKAKADYIRTNYTSKSYKRA", "length": 622, "header": "tr|A0A9J7JCN4-1|A0A9J7JCN4_CRIGR Isoform 1 of Leucine-rich repeat and IQ domain-containing protein 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Lrriq3 PE=4 SV=1 CANONICAL=A0A9J7JCN4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F901-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCN4/entry#A0A9J7F901-1", "sequence": { "sequence": "MFHGTITKELTSHEEWNHYNENIIENKKDFVFVKYNGLHLKSMENLQSCISLKVCIFSNNFITDIQPLQCCIKLIKLDLHGNQIKILPDRNFWIGLKNLKLLYLHDNSFCKLKNICVLAACASLIGLTMFDCPVSLKKGYRHVLVNSIWPLKALDHHVISDEEIIQNWHLPERFKAFNPRLFFKFCPALIKMRCTPADFKHSADYRKHISCLSYELKSKDIDRKPQTPSHPIQKGQKESKADSEDEEMDISFRVSTLKIPLYSSPSLKYGSVLKEMKPDYFSDYLQPIPGTHPKPPIKRETLEELKKRKEFLASQRAGMKLFMFNDLDKYHSDRKHQEKQTEKSAVVVLAQAARSRARYSIRESLRKKTILAQKLMERDNEAIQKGLRQIWKEKLAYLEKVRERKTMFLAEKKLNALDHSLVQNTNNERTLLLKGIFQVDKMKKEMEELRQKHLIVVEQWRTEKFKQSMLRHMKEMRAEEIRKRHSEEKFVIDTLIFQKALARLEEAKAKADYIRTNYTSKSYKRA", "length": 526, "header": "tr|A0A9J7F901-1|A0A9J7JCN4_CRIGR Computationally mapped isoform of Leucine-rich repeat and IQ domain-containing protein 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Lrriq3 PE=4 SV=1 CANONICAL=A0A9J7JCN4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JCN4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCN4/entry#A0A9J7JCN4-1", "sequence": { "sequence": "MFHGTITKELTSHEEWNHYNENIIENKKDFVFVKYNGLHLKSMENLQSCISLKVCIFSNNFITDIQPLQCCIKLIKLDLHGNQIKILPDRNFWIGLKNLKLLYLHDNSFCKLKNICVLAACASLIGLTMFDCPVSLKKGYRHVLVNSIWPLKALDHHVISDEEIIQNWHLPERFKAFNPRLFFKFCPALIKGSTYEDEINNIKHVISRINEILAHNSPVLIIQRWIRGFIVRKRLSPYFTHKRHHEKMIRVLETKWICIGRRSEDKILDDIFLFKPNINGKVAHWKQMRCTPADFKHSADYRKHISCLSYELKSKDIDRKPQTPSHPIQKGQKESKADSEDEEMDISFRVSTLKIPLYSSPSLKYGSVLKEMKPDYFSDYLQPIPGTHPKPPIKRETLEELKKRKEFLASQRAGMKLFMFNDLDKYHSDRKHQEKQTEKSAVVVLAQAARSRARYSIRESLRKKTILAQKLMERDNEAIQKGLRQIWKEKLAYLEKVRERKTMFLAEKKLNALDHSLVQNTNNERTLLLKGIFQVDKMKKEMEELRQKHLIVVEQWRTEKFKQSMLRHMKEMRAEEIRKRHSEEKFVIDTLIFQKALARLEEAKAKADYIRTNYTSKSYKRA", "length": 622, "header": "tr|A0A9J7JCN4-1|A0A9J7JCN4_CRIGR Isoform 1 of Leucine-rich repeat and IQ domain-containing protein 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Lrriq3 PE=4 SV=1 CANONICAL=A0A9J7JCN4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F901", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F901" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F901", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F901" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100769397", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769397", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 613, "end_pos": 615, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { 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Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027251408", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027251408" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JCX7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCX7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ptbp2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCX7", "locus": {} } ], "crossref": [ { "id": "A0A9J7JCX7", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JCX7", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd12696", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd12696", "database": "CDD", "categories": [ "Protein Classification" ] }, 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"database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021790", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021790", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034799", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034799", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034800", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034800", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035002", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035002", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055204", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055204", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100766066", "url": 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"RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2LXJ7", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LXJ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LXJ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LXJ7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F9C7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9C7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F9C7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9C7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F9J6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9J6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F9J6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9J6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JCX7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCX7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JCX7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCX7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDGIVTEVAVGVKRGSDELLSGSVLSSPNSNMSGMVVTANGNDSKKFKGEDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPALDPAIAAAFAKETSLLGLPVAAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKFFQRDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSKSTI", "length": 537, "header": "tr|A0A9J7JCX7-1|A0A9J7JCX7_CRIGR Isoform 1 of Polypyrimidine tract-binding protein 2 OS=Cricetulus griseus OX=10029 GN=Ptbp2 PE=4 SV=1 CANONICAL=A0A9J7JCX7-1" }, "isoforms": [ { "isoform_ac": "A0A8C2LXJ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCX7/entry#A0A8C2LXJ7-1", "sequence": { "sequence": "MDGIVTEVAVGVKRGSDELLSGSVLSSPNSNMSGMVVTANGNDSKKFKGEDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPALDPAIAAAFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKFFQDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSKSTI", "length": 531, "header": "tr|A0A8C2LXJ7-1|A0A9J7JCX7_CRIGR Computationally mapped isoform of Polypyrimidine tract-binding protein 2 OS=Cricetulus griseus OX=10029 GN=Ptbp2 PE=4 SV=1 CANONICAL=A0A9J7JCX7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F9C7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCX7/entry#A0A9J7F9C7-1", "sequence": { "sequence": "MDGIVTEVAVGVKRGSDELLSGSVLSSPNSNMSGMVVTANGNDSKKFKGEDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPALDPAIAAAFAKETSLLAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKFFQRDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSKSTI", "length": 532, "header": "tr|A0A9J7F9C7-1|A0A9J7JCX7_CRIGR Computationally mapped isoform of Polypyrimidine tract-binding protein 2 OS=Cricetulus griseus OX=10029 GN=Ptbp2 PE=4 SV=1 CANONICAL=A0A9J7JCX7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F9J6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCX7/entry#A0A9J7F9J6-1", "sequence": { "sequence": "MDGIVTEVAVGVKRGSDELLSGSVLSSPNSNMSGMVVTANGNDSKKFKGEDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPALDPAIAAAFAKETSLLGLPVAAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKFFQDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSKSTI", "length": 536, "header": "tr|A0A9J7F9J6-1|A0A9J7JCX7_CRIGR Computationally mapped isoform of Polypyrimidine tract-binding protein 2 OS=Cricetulus griseus OX=10029 GN=Ptbp2 PE=4 SV=1 CANONICAL=A0A9J7JCX7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JCX7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCX7/entry#A0A9J7JCX7-1", "sequence": { "sequence": "MDGIVTEVAVGVKRGSDELLSGSVLSSPNSNMSGMVVTANGNDSKKFKGEDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYNACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPALDPAIAAAFAKETSLLGLPVAAVPGALSPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTVLLVSNLNEEMVTPQSLFTLFGVYGDVQRVKILYNKKDSALIQMADGNQSQLAMNHLNGQKMYGKIIRVTLSKHQTVQLPREGLDDQGLTKDFGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVAEEDLRTLFANTGGTVKAFKFFQRDHKMALLQMATVEEAIQALIDLHNYNLGENHHLRVSFSKSTI", "length": 537, "header": "tr|A0A9J7JCX7-1|A0A9J7JCX7_CRIGR Isoform 1 of Polypyrimidine tract-binding protein 2 OS=Cricetulus griseus OX=10029 GN=Ptbp2 PE=4 SV=1 CANONICAL=A0A9J7JCX7-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 118, "start_aa": "Thr", "end_pos": 118, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr118", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 174, "start_aa": "Thr", "end_pos": 174, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr174", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. 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}, { "id": "IPR000198", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000198", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008936", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008936", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035892", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035892", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052118", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052118", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057459", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057459", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100753976", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753976", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JD56", "url": "https://www.orthodb.org/?gene=A0A9J7JD56", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46150", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46150", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46150:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46150:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00620", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00620", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25336", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25336", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027251711", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027251711", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F9S5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9S5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F9S5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9S5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F9Y9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9Y9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F9Y9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9Y9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JD56", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD56", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JD56-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD56-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAEPLRRTLGPLRERRGPGTLELCADAVAASLSEGRSAPRGLGGPGLEEPALGSGVRSELRGARVPWSRGAREAAAPGRALARAIPGPEGSGDDDDDDDGEDGEDGGADYYENLPAGCAPEGAEAPRASPSPAAGSSPGVEGGRLETGRLQTQLREAYYLLIQAMHDLPPDSGTRRGGPAGARAPAQQPPLPHGAAVRLACGPRGHDRPSLQVSPPRSPPDQPRVGRPRSPRMRLSPCRSLESLRGSPQPPLLQRWASDSWISCGAPRARDELPPRGGGMDGWSPGGHRAAASAALLPSICRDPGRSSGRPFRDLAGTSVISSSQEDRPEGPPLLKPPAVTVKKLQKWMYKGRLLSLGMKGRARGTAPKVPGAQAASPNLGSWKVQENHVLSVTTDQRITLTADLLGSDCGPPLKERDPEDVKDNAGFRGRHLLNSITVSKKRNWLYQSTLRSQSLDESKQCQDGSNFSLSPVSPPRHRQSPPVSKSPEEHCTHSMCNAASPPLSGSRSLDFSEDTDADDEGEIWYNPIPEEDELGVASVLRLEEGNAATGRLPALSVSMFSARDLRKAEPRGEELLCPAQHTGDIQIIQSNGIISEASIHSTEAVQQCKQRLGHRTQGMMAEDIPLLKSAFTGPGIFVSANRTELRAMEPSSPSPSPVKKGSSITWSLPDKIKSPRTVRKLSMKMKRLPEFSRKLGARGTSQYVNSPESTLSKCDCRELPHSVTLSSGNPTRNVISRYHLDSTVSSQHNYQKRATGSSKYSCKGGYLSDGDSPELRTKSSKHGSEHKLGKGREAIPNSCSKNELDIDAFRHYSFADQPKCSQYISGLMSVHFYGAEGLKPPRIDSKDVFCAIQVDSVNKARTALLTCRTTFLDMDHTFNIEIENAQHLKLVVFSWEPSPRRNRVCCHGTIVLPALFRVTKTHQLAVKLEPRGLIYVKVTLMEQWENSLHGLDKSRESVMFGVDIQKVVEKENVGSMVPLLIQKCIVEIERRGCQVVGLYRLCGSAAVKKELREAFEKDSKTVGLCESQYPDINVITGVLKDYLRELPSPLITKQLYEAVLDAMGKSPLKMSSNGCENELGDSKFTVGLLNCLPDVEKATLKMLLDHLKLVASYHEVNKMTCQNLAVCFGPVLLHQRQETSTHSNRVFTDSEELASALDFKKHIEVLHYLLQLWPVQRLAVKEPPDSLCLEQSSLNHLRRKRERPCVLNLSSTDSSGVLRPRPARLDSPLSNRYAGDWSSCGKNYFLNMKENFKDLDYDDVPLEDGESRDPPKTDGAEVMIKQQHPVSKACTFQTYLTMETIESTMSQKANLRDLQESIDALIGSLERELNKNKLNMSV", "length": 1339, "header": "tr|A0A9J7JD56-1|A0A9J7JD56_CRIGR Isoform 1 of Rho GTPase-activating protein SYDE2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Syde2 PE=4 SV=1 CANONICAL=A0A9J7JD56-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F9S5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD56/entry#A0A9J7F9S5-1", "sequence": { "sequence": "MAEPLRRTLGPLRERRGPGTLELCADAVAASLSEGRSAPRGLGGPGLEEPALGSGVRSELRGARVPWSRGAREAAAPGRALARAIPGPEGSGDDDDDDDGEDGEDGGADYYENLPAGCAPEGAEAPRASPSPAAGSSPGVEGGRLETGRLQTQLREAYYLLIQAMHDLPPDSGTRRGGPAGARAPAQQPPLPHGAAVRLACGPRGHDRPSLQVSPPRSPPDQPRVGRPRSPRMRLSPCRSLESLRGSPQPPLLQRWASDSWISCGAPRARDELPPRGGGMDGWSPGGHRAAASAALLPSICRDPGRSSGRPFRDLAGTSVISSSQEDRPEGPPLLKPPAVTVKKLQKWMYKGRLLSLGMKGRARGTAPKVPGAQAASPNLGSWKVQENHVLSVTTDQRITLTADLLGSDCGPPLKERDPEDVKDNAGFRGRHLLNSITVSKKRNWLYQSTLRSQSLDESKQCQDGSNFSLSPVSPPRHRQSPPVSKSPEEHCTHSMCNAASPPLSGSRSLDFSEDTDADDEGEIWYNPIPEEDELGVASVLRLEEGNAATGRLPALSVSMFSARDLRKAEPRGEELLCPAQHTGDIQIIQSNGIISEASIHSTEAVQQCKQRLGHRTQGMMAEDIPLLKSAFTGPGIFVSANRTELRAMEPSSPSPSPVKKGSSITWSLPDKIKSPRTVRKLSMKMKRLPEFSRKLGARGTSQYVNSPESTLSKCDCRELPHSVTLSSGNPTRNVISRYHLDSTVSSQHNYQKRATGSSKYSCKGGYLSDGDSPELRTKSSKHGSEHKLGKGREAIPNSCSKNELDIDAFRHYSFADQPKCSQYISGLMSVHFYGAEGLKPPRIDSKDVFCAIQVDSVNKARTALLTCRTTFLDMDHTFNIEIENAQHLKLVVFSWEPSPRRNRVCCHGTIVLPALFRVTKTHQLAVKLEPRGLIYVKVTLMEQWENSLHGLDKSRESVMFGVDIQKVVEKENVGSMVPLLIQKCIVEIERRGCQVVGLYRLCGSAAVKKELREAFEKDSKTVGLCESQYPDINVITGVLKDYLRELPSPLITKQLYEAVLDAMGKSPLKMSSNGCENELGDSKFTVGLLNCLPDVEKATLKMLLDHLKLVASYHEVNKMTCQNLAVCFGPVLLHQRQETSTHSNRVFTDSEELASALDFKKHIEVLHYLLQLWPGQKKEDS", "length": 1182, "header": "tr|A0A9J7F9S5-1|A0A9J7JD56_CRIGR Computationally mapped isoform of Rho GTPase-activating protein SYDE2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Syde2 PE=4 SV=1 CANONICAL=A0A9J7JD56-1" }, "locus": {} }, { "isoform_ac": "A0A9J7F9Y9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD56/entry#A0A9J7F9Y9-1", "sequence": { "sequence": "MAEPLRRTLGPLRERRGPGTLELCADAVAASLSEGRSAPRGLGGPGLEEPALGSGVRSELRGARVPWSRGAREAAAPGRALARAIPGPEGSGDDDDDDDGEDGEDGGADYYENLPAGCAPEGAEAPRASPSPAAGSSPGVEGGRLETGRLQTQLREAYYLLIQAMHDLPPDSGTRRGGPAGARAPAQQPPLPHGAAVRLACGPRGHDRPSLQVSPPRSPPDQPRVGRPRSPRMRLSPCRSLESLRGSPQPPLLQRWASDSWISCGAPRARDELPPRGGGMDGWSPGGHRAAASAALLPSICRDPGRSSGRPFRDLAGTSVISSSQEDRPEGPPLLKPPAVTVKKLQKWMYKGRLLSLGMKGRARGTAPKVPGAQAASPNLGSWKVQENHVLSVTTDQRITLTDLLGSDCGPPLKERDPEDVKDNAGFRGRHLLNSITVSKKRNWLYQSTLRSQSLDESKQCQDGSNFSLSPVSPPRHRQSPPVSKSPEEHCTHSMCNAASPPLSGSRSLDFSEDTDADDEGEIWYNPIPEEDELGVASVLRLEEGNAATGRLPALSVSMFSARDLRKAEPRGEELLCPAQHTGDIQIIQSNGIISEASIHSTEAVQQCKQRLGHRTQGMMAEDIPLLKSAFTGPGIFVSANRTELRAMEPSSPSPSPVKKGSSITWSLPDKIKSPRTVRKLSMKMKRLPEFSRKLGARGTSQYVNSPESTLSKCDCRELPHSVTLSSGNPTRNVISRYHLDSTVSSQHNYQKRATGSSKYSCKGGYLSDGDSPELRTKSSKHGSEHKLGKGREAIPNSCSKNELDIDAFRHYSFADQPKCSQYISGLMSVHFYGAEGLKPPRIDSKDVFCAIQVDSVNKARTALLTCRTTFLDMDHTFNIEIENAQHLKLVVFSWEPSPRRNRVCCHGTIVLPALFRVTKTHQLAVKLEPRGLIYVKVTLMEQWENSLHGLDKSRESVMFGVDIQKVVEKENVGSMVPLLIQKCIVEIERRGCQVVGLYRLCGSAAVKKELREAFEKDSKTVGLCESQYPDINVITGVLKDYLRELPSPLITKQLYEAVLDAMGKSPLKMSSNGCENELGDSKFTVGLLNCLPDVEKATLKMLLDHLKLVASYHEVNKMTCQNLAVCFGPVLLHQRQETSTHSNRVFTDSEELASALDFKKHIEVLHYLLQLWPVQRLAVKEPPDSLCLEQSSLNHLRRKRERPCVLNLSSTDSSGVLRPRPARLDSPLSNRYAGDWSSCGKNYFLNMKENFKDLDYDDVPLEDGESRDPPKTDGAEVMIKQQHPVSKACTFQTYLTMETIESTMSQKANLRDLQESIDALIGSLERELNKNKLNMSV", "length": 1338, "header": "tr|A0A9J7F9Y9-1|A0A9J7JD56_CRIGR Computationally mapped isoform of Rho GTPase-activating protein SYDE2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Syde2 PE=4 SV=1 CANONICAL=A0A9J7JD56-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JD56-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD56/entry#A0A9J7JD56-1", "sequence": { "sequence": "MAEPLRRTLGPLRERRGPGTLELCADAVAASLSEGRSAPRGLGGPGLEEPALGSGVRSELRGARVPWSRGAREAAAPGRALARAIPGPEGSGDDDDDDDGEDGEDGGADYYENLPAGCAPEGAEAPRASPSPAAGSSPGVEGGRLETGRLQTQLREAYYLLIQAMHDLPPDSGTRRGGPAGARAPAQQPPLPHGAAVRLACGPRGHDRPSLQVSPPRSPPDQPRVGRPRSPRMRLSPCRSLESLRGSPQPPLLQRWASDSWISCGAPRARDELPPRGGGMDGWSPGGHRAAASAALLPSICRDPGRSSGRPFRDLAGTSVISSSQEDRPEGPPLLKPPAVTVKKLQKWMYKGRLLSLGMKGRARGTAPKVPGAQAASPNLGSWKVQENHVLSVTTDQRITLTADLLGSDCGPPLKERDPEDVKDNAGFRGRHLLNSITVSKKRNWLYQSTLRSQSLDESKQCQDGSNFSLSPVSPPRHRQSPPVSKSPEEHCTHSMCNAASPPLSGSRSLDFSEDTDADDEGEIWYNPIPEEDELGVASVLRLEEGNAATGRLPALSVSMFSARDLRKAEPRGEELLCPAQHTGDIQIIQSNGIISEASIHSTEAVQQCKQRLGHRTQGMMAEDIPLLKSAFTGPGIFVSANRTELRAMEPSSPSPSPVKKGSSITWSLPDKIKSPRTVRKLSMKMKRLPEFSRKLGARGTSQYVNSPESTLSKCDCRELPHSVTLSSGNPTRNVISRYHLDSTVSSQHNYQKRATGSSKYSCKGGYLSDGDSPELRTKSSKHGSEHKLGKGREAIPNSCSKNELDIDAFRHYSFADQPKCSQYISGLMSVHFYGAEGLKPPRIDSKDVFCAIQVDSVNKARTALLTCRTTFLDMDHTFNIEIENAQHLKLVVFSWEPSPRRNRVCCHGTIVLPALFRVTKTHQLAVKLEPRGLIYVKVTLMEQWENSLHGLDKSRESVMFGVDIQKVVEKENVGSMVPLLIQKCIVEIERRGCQVVGLYRLCGSAAVKKELREAFEKDSKTVGLCESQYPDINVITGVLKDYLRELPSPLITKQLYEAVLDAMGKSPLKMSSNGCENELGDSKFTVGLLNCLPDVEKATLKMLLDHLKLVASYHEVNKMTCQNLAVCFGPVLLHQRQETSTHSNRVFTDSEELASALDFKKHIEVLHYLLQLWPVQRLAVKEPPDSLCLEQSSLNHLRRKRERPCVLNLSSTDSSGVLRPRPARLDSPLSNRYAGDWSSCGKNYFLNMKENFKDLDYDDVPLEDGESRDPPKTDGAEVMIKQQHPVSKACTFQTYLTMETIESTMSQKANLRDLQESIDALIGSLERELNKNKLNMSV", "length": 1339, "header": "tr|A0A9J7JD56-1|A0A9J7JD56_CRIGR Isoform 1 of Rho GTPase-activating protein SYDE2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Syde2 PE=4 SV=1 CANONICAL=A0A9J7JD56-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F9S5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9S5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F9S5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9S5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100753976", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753976", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "GTPase activator activity", "id": "GO:0005096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005096", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JD56", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD56" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JD56", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD56" } ], "pmid": "" }, { "name": "cell migration", "id": "GO:0016477", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016477", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JD56", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD56" } ], "pmid": "" }, { "name": "regulation of Ras protein signal transduction", "id": "GO:0046578", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046578", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JD56", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD56" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "synaptic membrane", "id": "GO:0097060", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097060", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JD56", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD56" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1209, "end_pos": 1211, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1336, "end_pos": 1338, "annotation": "n_glycosylation_sequon" }, { "start_pos": 467, "end_pos": 469, "annotation": "n_glycosylation_sequon" }, { "start_pos": 642, "end_pos": 644, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JD56", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD56" }, { "id": "PS50004", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50004" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2", "eco_id": "ECO_0000259", "start_pos": 807, "end_pos": 926, "start_aa": "Ile", "end_aa": "Ala", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7JD56", "database": 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"uniprot_ac": "A0A9J7J816", "uniprot_id": "A0A9J7J816_CRIGR", "mass": { "chemical_mass": 58962.0, "monoisotopic_mass": 58962.0 }, "refseq": { "ac": "XP_027254305", "name": "MORN repeat-containing protein 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027254305" }, "gene_names": [ { "name": "Morn1", "type": "recommended", "evidence": [ { "id": "A0A9J7J816", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J816" } ] }, { "name": "Morn1", "type": "synonym", "evidence": [ { "id": "XP_027254305", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027254305" } ] } ], "protein_names": [ { "name": "MORN repeat-containing protein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027254305", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027254305" }, { "id": "A0A9J7J816", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J816/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027254305.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027254305", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027254305" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J816", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J816" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Morn1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J816", "locus": {} } ], "crossref": [ { "id": "A0A9J7J816", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7J816", "database": "AlphaFoldDB", "categories": [] }, { "id": "100757445", "url": "https://www.ncbi.nlm.nih.gov/gene/100757445", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003409", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003409", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100757445", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757445", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7J816", "url": "https://www.orthodb.org/?gene=A0A9J7J816", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23084", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23084", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23084:SF263", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23084:SF263", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02493", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02493", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027254305", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027254305", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7F9Y1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9Y1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7F9Y1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9Y1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FDG1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDG1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FDG1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDG1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J816", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J816", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J816-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J816-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JDD7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDD7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JDD7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDD7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JDI0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDI0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JDI0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDI0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MHRAAQAPWCPQAPGPEAAASDVSVAKTQPGHAPWQPEANSQRLCGCSETLGGKMAAAGGRTVASPQPPRSSQRRPPRDGYGVYVYPNSFFRYEGEWKGGKKHGHGKLLFKDGSYYEGEFVDGEITGEGYQYWAWSGNTYSGQFVLGEPQGHGIMKYKAGGFYEGELLQGLREGQGFLEDQDRQVYQGSFHDNKRHGRGQMIFKNGDKYEGDWVRDQRQGHGVLHCADGSIYEGQWHSDVFSGLGSLAHCSGVTYCGMFINGHPAAQAKKIVVLGPEVLEVFQGSPFTLNVQLQQDDGEVATSESGRILKISAGVRYVQLPEYSEVSFFKMDEDHMEEPIETPFGFQCIPYPLSIPTSWELEPGSPEENGRADILLSKRDSELEQDSGAFHVEGDTPSILPAGSRHESCSPETCLQVQQGCAEFADIFLGPLPPEMQPFLFLPSVLEKTDSSPKDDQSPPEVVPTTQDPPKGIRPDGTAEEPSTSAYLGEYVVMISDETTPPFLGHRLPTAFKHLRVLAKRDSQGPHVPEDHPEALN", "length": 537, "header": "tr|A0A9J7J816-1|A0A9J7J816_CRIGR Isoform 1 of MORN repeat-containing protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Morn1 PE=4 SV=1 CANONICAL=A0A9J7J816-1" }, "isoforms": [ { "isoform_ac": "A0A9J7F9Y1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J816/entry#A0A9J7F9Y1-1", "sequence": { "sequence": "MHRAAQAPWCPQAPGPEAAASDVSVAKTQPGHAPWQPEANSQRLCGCSETLGGKMAAAGGRTVASPQPPRSSQRRPPRDGYGVYVYPNSFFRYEGEWKGGKKHGHGKLLFKDGSYYEGEFVDGEITGEGYQYWAWSGNTYSGQFVLGEPQGHGIMKYKAGGTVTSTKATGFETSVRDTGCCTVLMAPYMRDSGTAMSSVGWAAWPTAQESLTVGCLSMATQQAKKIVVLGPEVLEVFQGSPFTLNVQLQQDDGEVATSESGRILKISAGVRYVQLPEYSEVSFFKMDEDHMEEPIETPFGFQCIPYPLSIPTSWELEPGSPEENGRADILLSKRDSELEQDSGAFHVEGDTPSILPAGSRHESCSPETCLQVQQGCAEFADIFLGPLPPEMQPFLFLPSVLEKTDSSPKDDQSPPEVVPTTQDPPKGIRPDGTAEEPSTSAYLGEYVVMISDETTPPFLGHRLPTAFKHLRVLAKRDSQGPHVPEDHPEALN", "length": 492, "header": "tr|A0A9J7F9Y1-1|A0A9J7J816_CRIGR Computationally mapped isoform of MORN repeat-containing protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Morn1 PE=4 SV=1 CANONICAL=A0A9J7J816-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FDG1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J816/entry#A0A9J7FDG1-1", "sequence": { "sequence": "MHRAAQAPWCPQAPGPEAAASDVSVAKTQPGHAPWQPEANSQRLCGCSETLGGKMAAAGGRTVASPQPPRSSQRRPPRDGYGVYVYPNSFFRYEGEWKGGKKHGHGKLLFKDGSYYEGEFVDGEITGEGYQYWAWSGNTYSGQFVLGEPQGHGIMKYKAGGFYEGELLQGLREGQGFLEDQDRQVYQGSFHDNKRHGRGQMIFKNGDKYEGDWVRDQRQGHGVLHCADGSIYEGQWHSDVFSGLGSLAHCSGVTYCGMFINGHPAAQAKKIVVLGPEVLEVFQGSPFTLNVQLQQDDGEVATSESGRILKISAGVRYVQLPEYSEVSFFKMDEDHMEEPIETPFGFQCIPYPLSIPTSWELEPGSPEENGRADILLSKRDSELEQDSGAFHVEGDTPSILPGRWGFLPWVIMQPTSILTTQTQQLWKTNGPGLAKAVGSNLN", "length": 442, "header": "tr|A0A9J7FDG1-1|A0A9J7J816_CRIGR Computationally mapped isoform of MORN repeat-containing protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Morn1 PE=4 SV=1 CANONICAL=A0A9J7J816-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J816-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J816/entry#A0A9J7J816-1", "sequence": { "sequence": "MHRAAQAPWCPQAPGPEAAASDVSVAKTQPGHAPWQPEANSQRLCGCSETLGGKMAAAGGRTVASPQPPRSSQRRPPRDGYGVYVYPNSFFRYEGEWKGGKKHGHGKLLFKDGSYYEGEFVDGEITGEGYQYWAWSGNTYSGQFVLGEPQGHGIMKYKAGGFYEGELLQGLREGQGFLEDQDRQVYQGSFHDNKRHGRGQMIFKNGDKYEGDWVRDQRQGHGVLHCADGSIYEGQWHSDVFSGLGSLAHCSGVTYCGMFINGHPAAQAKKIVVLGPEVLEVFQGSPFTLNVQLQQDDGEVATSESGRILKISAGVRYVQLPEYSEVSFFKMDEDHMEEPIETPFGFQCIPYPLSIPTSWELEPGSPEENGRADILLSKRDSELEQDSGAFHVEGDTPSILPAGSRHESCSPETCLQVQQGCAEFADIFLGPLPPEMQPFLFLPSVLEKTDSSPKDDQSPPEVVPTTQDPPKGIRPDGTAEEPSTSAYLGEYVVMISDETTPPFLGHRLPTAFKHLRVLAKRDSQGPHVPEDHPEALN", "length": 537, "header": "tr|A0A9J7J816-1|A0A9J7J816_CRIGR Isoform 1 of MORN repeat-containing protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Morn1 PE=4 SV=1 CANONICAL=A0A9J7J816-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JDD7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J816/entry#A0A9J7JDD7-1", "sequence": { "sequence": "MHRAAQAPWCPQAPGPEAAASDVSVAKTQPGHAPWQPEANSQRLCGCSETLGGKMAAAGGRTVASPQPPRSSQRRPPRDGYGVYVYPNSFFRYEGEWKGGKKHGHGKLLFKDGSYYEGEFVDGEITGEGYQYWAWSGNTYSGQFVLGEPQGHGIMKYKAGGFYEGELLQGLREGTVTSTKATGFETSVRDTGCCTVLMAPYMRDSGTAMSSVGWAAWPTAQESLTVGCLSMATQQAKKIVVLGPEVLEVFQGSPFTLNVQLQQDDGEVATSESGRILKISAGVRYVQLPEYSEVSFFKMDEDHMEEPIETPFGFQCIPYPLSIPTSWELEPGSPEENGRADILLSKRDSELEQDSGAFHVEGDTPSILPAGSRHESCSPETCLQVQQGCAEFADIFLGPLPPEMQPFLFLPSVLEKTDSSPKDDQSPPEVVPTTQDPPKGIRPDGTAEEPSTSAYLGEYVVMISDETTPPFLGHRLPTAFKHLRVLAKRDSQGPHVPEDHPEALN", "length": 505, "header": "tr|A0A9J7JDD7-1|A0A9J7JDD7_CRIGR Computationally mapped isoform of MORN repeat-containing protein 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Morn1 PE=4 SV=1 CANONICAL=A0A9J7J816-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JDI0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J816/entry#A0A9J7JDI0-1", "sequence": { "sequence": "MHRAAQAPWCPQAPGPEAAASDVSVAKTQPGHAPWQPEANSQRLCGCSETLGGKMAAAGGRTVASPQPPRSSQRRPPRDGYGVYVYPNSFFRYEGEWKGGKKHGHGKLLFKDGSYYEGEFVDGEITGEGYQYWAWSGNTYSGQFVLGEPQGHGIMKYKAGGQGFLEDQDRQVYQGSFHDNKRHGRGQMIFKNGDKYEGDWVRDQRQGHGVLHCADGSIYEGQWHSDVFSGLGSLAHCSGVTYCGMFINGHPAAQAKKIVVLGPEVLEVFQGSPFTLNVQLQQDDGEVATSESGRILKISAGVRYVQLPEYSEVSFFKMDEDHMEEPIETPFGFQCIPYPLSIPTSWELEPGSPEENGRADILLSKRDSELEQDSGAFHVEGDTPSILPAGSRHESCSPETCLQVQQGCAEFADIFLGPLPPEMQPFLFLPSVLEKTDSSPKDDQSPPEVVPTTQDPPKGIRPDGTAEEPSTSAYLGEYVVMISDETTPPFLGHRLPTAFKHLRVLAKRDSQGPHVPEDHPEALN", "length": 524, "header": "tr|A0A9J7JDI0-1|A0A9J7JDI0_CRIGR Computationally mapped isoform of MORN repeat-containing protein 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Morn1 PE=4 SV=1 CANONICAL=A0A9J7J816-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F9Y1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9Y1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7F9Y1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7F9Y1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100757445", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757445", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7JDT0-1", "uniprot_ac": "A0A9J7JDT0", "uniprot_id": "A0A9J7JDT0_CRIGR", "mass": { "chemical_mass": 163602.0, "monoisotopic_mass": 163602.0 }, "refseq": { "ac": "XP_027252630", "name": "ankyrin and armadillo repeat-containing protein isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252630" }, "gene_names": [ { "name": "LOC100767421", "type": "recommended", "evidence": [ { "id": "A0A9J7JDT0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDT0" } ] }, { "name": "LOC100767421", "type": "synonym", "evidence": [ { "id": "XP_027252630", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027252630" } ] } ], "protein_names": [ { "name": "Ankyrin and armadillo repeat-containing protein isoform 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This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. 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"length": 1445, "header": "tr|A0A9J7FB47-1|A0A9J7JDT0_CRIGR Computationally mapped isoform of Ankyrin and armadillo repeat-containing protein isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100767421 PE=4 SV=1 CANONICAL=A0A9J7JDT0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JDT0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDT0/entry#A0A9J7JDT0-1", "sequence": { "sequence": "MLRISKKGIVRFDQVQDEETYLENLAVQRNASAFFEKYDRSEVQELLTTTVVSWLSSKDDVRSQLDIPSGLMSQINNVGFSNAILLTPVDPTAHLDYREVHQILRELAVGIYCLNQIPSISLEANYDQSSSCQLPPAYYDTRIGQILIHIDYMLKALWHGIYMPKEKRTRFSELWRTIMDIDQDGKPQTSKDIFSEFSSAGLIDITNDPDFVGIYDEDMNEDPTYDPNSPEEKAIFMKYAENIMLKLTFSTTRVQQHENIFIFETDYWITNAIKFNQDYLDICTYQRLQQRLYLQKKVIQKHFEKKKEVRRGMSYLKLICFLIPFLLSLKKKMKVPYLNSLLPPFSDDKVKTERELPPFIYGRDFKCQNFDYKEHQYFHVHGGIEFDISTSPVESALDEFQNNIGKIRECAANTFAEDSGYKEFYSVPVMEFYGKSYYVIYFELEIFYQQLHKTQWWGAINEIVNNLRVKRLPLTEAQLHEQFKKKFGFKKAMKCKSIPFGMKSAVERGLSAVFHTFSRRTSSSTINVSDEAGYAIFHHAALHNRVSIICQLCNANFNVNQRRFIIFTPADSSKGDTKKERNGPTPLHLACQACSLESTVCLLCFKADYTLSEKRGWMPIHFAAFYDNICIIIVLCRKDPSLLEAEATAENQCTPLLLAATSGALDTIQYLFSLGANWRKTDIKGNNIIHLSVLTFHTEVLKYIIELNIPELPVWKTLVEMLQCESFKRRMMAVMSLEVICLANDQYWKCILDAGAIPALINLLKYPKIKLQCKTVGLLSNISTHVSVVHALVEGGGIPALINLLGSDEPELHSRCAVILYDIAMNENKDVIAQYNGIPALINLLNLDMESVLVNVMNCIRVLCMGNEGNQRAMVDHNGIQYLIRFLSSDSDILKAVSSATIAEVGRDNRDVQDAIAMEGAIPPLVDLFKGKQLSVQVKGAMAVESLANYNPLIQKAFLKRNLTKDLLKLLKAFQLNVKEQGAVALWALAGQTLKQQKYMAEQIGYNFIINMLLSPSAKMQYVGGEAVIALSKDSKIHQNQICEGNGIAPLVRLLRINKIAEGTLLSVIRAVGSICVGVAHTSNPLSQQYVVEENALPVLIQLLRTHPSLNIKVEVAFSLACIVLGNDSLQKELQEKEGFVYSDVLYLLHSKDKEICLRAGYALTLFAFNNRFQQYLILENGRITLSIFEPFLRSKVETERAMAAFQIIVLAKVIIDVDHIAASARGVTILVDSLYSAHFPTIVLTGNLIASLAHCRVGIPDAFTTLGAIRRLCYHLYSGREEVRTACSCALGYLTYNAYAFRILLSECRNKPNQFLRITNNISRDAKINPAFLKEFQMQQHVGLPSLSLEKNGGPSVIPVFKKGKEHRRKARPKIQPKDSLTLIPPVTNLKGLFRTAKKTNVSHNTFSFSSGISSDIITVSRPRIVYLNMLGKHEQKSSPELSES", "length": 1446, "header": "tr|A0A9J7JDT0-1|A0A9J7JDT0_CRIGR Isoform 1 of Ankyrin and armadillo repeat-containing protein isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100767421 PE=4 SV=1 CANONICAL=A0A9J7JDT0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FB47", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FB47" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100767421", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767421", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 1127, "end_pos": 1129, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1322, "end_pos": 1324, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1402, "end_pos": 1404, "annotation": "n_glycosylation_sequon" }, { "start_pos": 30, "end_pos": 32, "annotation": "n_glycosylation_sequon" }, { "start_pos": 527, "end_pos": 529, "annotation": "n_glycosylation_sequon" }, { "start_pos": 781, "end_pos": 783, 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] }, { "uniprot_canonical_ac": "A0A9J7JBA3-1", "uniprot_ac": "A0A9J7JBA3", "uniprot_id": "A0A9J7JBA3_CRIGR", "mass": { "chemical_mass": 47237.0, "monoisotopic_mass": 47237.0 }, "refseq": { "ac": "XP_027254157", "name": "tumor necrosis factor receptor superfamily member 25 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027254157" }, "gene_names": [ { "name": "Tnfrsf25", "type": "recommended", "evidence": [ { "id": "A0A9J7JBA3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBA3" } ] }, { "name": "Tnfrsf25", "type": "synonym", "evidence": [ { "id": "XP_027254157", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027254157" } ] } ], "protein_names": [ { "name": "Tumor necrosis factor receptor superfamily member 25 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7JBA3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBA3/entry#names_and_taxonomy" } ] }, { "name": "tumor necrosis factor receptor superfamily member 25 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027254157", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027254157" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027254157", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027254157" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JBA3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBA3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tnfrsf25", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBA3", "locus": {} } ], "crossref": [ { "id": "A0A9J7JBA3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JBA3", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd13420", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13420", "database": "CDD", "categories": [ "Protein Classification" ] 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"https://www.uniprot.org/uniprotkb/A0A9J7FBM1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J7Z5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7Z5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J7Z5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7Z5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JBA3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBA3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JBA3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBA3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JDA6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDA6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JDA6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDA6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JDE4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDE4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JDE4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDE4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEEEPGRERCSPGAATQRSATHVPQALFLLLLLLLPGGQGQGGTPGRCDCARDSQKRYGPFCCRGCPEGHYMKTSCTEPCGNATCLPCPRGTFLTWGNHFKSDCTRCQACDEMGFQVTLENCSAVSDTRCGCQSGLVCSTEPCREGSPFPCFSCSDCAAPPTPAILRDQAEGGPQDGSPYLLQGGEGIRQSWTALSPARTPFAGVSTESALKPQTQPAAPEAGSGVVLWVQLLLGASFLLGPTLICLYCRCQPCKPVVPADTAGMETLTSPQTTHLSASDSAHTLLAPQDSGKVCTTVQLLGNNWTPGLSHTQEVACSQSPQPWNQLPNRTLGLPLTPALSPAPPSGSPAAMLQPGPQLYDVMDAVPARRWKEFVRTLGLREAEIEAVEVEICRFRDQQYEMLKRWRQQQPAGLGAIYAALERMGLEGCAEDLRSRLQHGP", "length": 441, "header": "tr|A0A9J7JBA3-1|A0A9J7JBA3_CRIGR Isoform 1 of Tumor necrosis factor receptor superfamily member 25 isoform X1 OS=Cricetulus griseus OX=10029 GN=Tnfrsf25 PE=4 SV=1 CANONICAL=A0A9J7JBA3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FBM1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBA3/entry#A0A9J7FBM1-1", "sequence": { "sequence": "MEEEPGRERCSPGAATQRSATHVPQALFLLLLLLLPGGQGQGGTPGRCDCARDSQKRYGPFCCRGCPEGHYMKTSCTEPCGNATCLPCPRGTFLTWGNHFKSDCTRCQACDEMGFQVTLENCSAVSDTRCGCQSGLVCSTEPCREGSPFPCFSCSDCAAPPTPAILRDQAEGGPQDGSPYLLQGGEGIRQSWTALSPARTPFAGVSTESALKPQTQPAAPEAGSGVVLWVQLLLGASFLLGPTLICLYCRCQPCKPVVPDTAGMETLTSPQTTHLSASDSAHTLLAPQDSGKVCTTVQLLGNNWTPGLSHTQEVACSQSPQPWNQLPNRTLGLPLTPALSPAPPSGSPAAMLQPGPQLYDVMDAVPARRWKEFVRTLGLREAEIEAVEVEICRFRDQQYEMLKRWRQQQPAGLGAIYAALERMGLEGCAEDLRSRLQHGP", "length": 440, "header": "tr|A0A9J7FBM1-1|A0A9J7JBA3_CRIGR Computationally mapped isoform of Tumor necrosis factor receptor superfamily member 25 isoform X1 OS=Cricetulus griseus OX=10029 GN=Tnfrsf25 PE=4 SV=1 CANONICAL=A0A9J7JBA3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J7Z5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBA3/entry#A0A9J7J7Z5-1", "sequence": { "sequence": "MEEEPGRERCSPGAATQRSATHVPQALFLLLLLLLPGGQGQGGTPGRCDCARDSQKRYGPFCCRGCPEGHYMKTSCTEPCGNATCLPCPRGTFLTWGNHFKSDCTRCQACDEMGFQVTLENCSAVSDTRCGCQSGLVCSTEPCREGSPFPCFSCSDCAAPPTPAILRDQAEGGPQDGSPYLLQGGEGIRQSWTALSPARTPFAGVSTESALKPQTQPAAPEAGSGVVLWVQLLLGASFLLGPTLICLYCRCQPCKPVVPADTAGMETLTSPQTTHLSASDSAHTLLAPQDSGKVCTTVQLLGNNWTPGLSHTQEVACSQSPQPWNQLPNRTLAPPSGSPAAMLQPGPQLYDVMDAVPARRWKEFVRTLGLREAEIEAVEVEICRFRDQQYEMLKRWRQQQPAGLGAIYAALERMGLEGCAEDLRSRLQHGP", "length": 431, "header": "tr|A0A9J7J7Z5-1|A0A9J7J7Z5_CRIGR Computationally mapped isoform of Tumor necrosis factor receptor superfamily member 25 isoform X3 OS=Cricetulus griseus OX=10029 GN=Tnfrsf25 PE=4 SV=1 CANONICAL=A0A9J7JBA3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JBA3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBA3/entry#A0A9J7JBA3-1", "sequence": { "sequence": "MEEEPGRERCSPGAATQRSATHVPQALFLLLLLLLPGGQGQGGTPGRCDCARDSQKRYGPFCCRGCPEGHYMKTSCTEPCGNATCLPCPRGTFLTWGNHFKSDCTRCQACDEMGFQVTLENCSAVSDTRCGCQSGLVCSTEPCREGSPFPCFSCSDCAAPPTPAILRDQAEGGPQDGSPYLLQGGEGIRQSWTALSPARTPFAGVSTESALKPQTQPAAPEAGSGVVLWVQLLLGASFLLGPTLICLYCRCQPCKPVVPADTAGMETLTSPQTTHLSASDSAHTLLAPQDSGKVCTTVQLLGNNWTPGLSHTQEVACSQSPQPWNQLPNRTLGLPLTPALSPAPPSGSPAAMLQPGPQLYDVMDAVPARRWKEFVRTLGLREAEIEAVEVEICRFRDQQYEMLKRWRQQQPAGLGAIYAALERMGLEGCAEDLRSRLQHGP", "length": 441, "header": "tr|A0A9J7JBA3-1|A0A9J7JBA3_CRIGR Isoform 1 of Tumor necrosis factor receptor superfamily member 25 isoform X1 OS=Cricetulus griseus OX=10029 GN=Tnfrsf25 PE=4 SV=1 CANONICAL=A0A9J7JBA3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JDA6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBA3/entry#A0A9J7JDA6-1", "sequence": { "sequence": "MEEEPGRERCSPGAATQRSATHVPQALFLLLLLLLPGGQGQGGTPGRCDCARDSQKRYGPFCCRGCPEGHYMKTSCTEPCGNATCLPCPRGTFLTWGNHFKSDCTRCQACDEMGFQVTLENCSAVSDTRCGCQSGLVCSTEPCREGSPFPCFSCSDCAAPPTPGVSTESALKPQTQPAAPEAGSGVVLWVQLLLGASFLLGPTLICLYCRCQPCKPVVPADTAGMETLTSPQTTHLSASDSAHTLLAPQDSGKVCTTVQLLGNNWTPGLSHTQEVACSQSPQPWNQLPNRTLGLPLTPALSPAPPSGSPAAMLQPGPQLYDVMDAVPARRWKEFVRTLGLREAEIEAVEVEICRFRDQQYEMLKRWRQQQPAGLGAIYAALERMGLEGCAEDLRSRLQHGP", "length": 401, "header": "tr|A0A9J7JDA6-1|A0A9J7JDA6_CRIGR Computationally mapped isoform of Tumor necrosis factor receptor superfamily member 25 isoform X5 OS=Cricetulus griseus OX=10029 GN=Tnfrsf25 PE=4 SV=1 CANONICAL=A0A9J7JBA3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JDE4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBA3/entry#A0A9J7JDE4-1", "sequence": { "sequence": "MEEEPGRERCSPGAATQRSATHVPQALFLLLLLLLPGGQGQGGTPGRCDCARDSQKRYGPFCCRGCPEGHYMKTSCTEPCGNATCLPCPRGTFLTWGNHFKSDCTRCQACDEMGFQVTLENCSAVSDTRCGCQSGLVCSTEPCREGSPFPCFSCSDCAAPPTPAILRDQAEGGPQDGSPYLLQGGEGIRQSWTALSPARTPFAGVSTESALKPQTQPAAPEAGSGVVLWVQLLLGASFLLGPTLICLYCRCQPCKPVVPADTAGMETLTSPQTTHLSASDSAHTLLAPQDSGKVCTTVQLLGNNWTPGLSHTQEVACSQSPQPWNQLPNRTLGSPAAMLQPGPQLYDVMDAVPARRWKEFVRTLGLREAEIEAVEVEICRFRDQQYEMLKRWRQQQPAGLGAIYAALERMGLEGCAEDLRSRLQHGP", "length": 427, "header": "tr|A0A9J7JDE4-1|A0A9J7JDE4_CRIGR Computationally mapped isoform of Tumor necrosis factor receptor superfamily member 25 isoform X4 OS=Cricetulus griseus OX=10029 GN=Tnfrsf25 PE=4 SV=1 CANONICAL=A0A9J7JBA3-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 162, "start_aa": "Thr", "end_pos": 162, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr162", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 44, "start_aa": "Thr", "end_pos": 44, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr44", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FBM1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBM1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FBM1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBM1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100755530", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755530", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JBA3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBA3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JBA3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBA3" } ], "pmid": "" }, { "name": "apoptotic process", "id": "GO:0006915", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006915", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JBA3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBA3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 121, "end_pos": 123, "annotation": "n_glycosylation_sequon" }, { "start_pos": 304, "end_pos": 306, "annotation": "n_glycosylation_sequon" }, { "start_pos": 329, "end_pos": 331, "annotation": "n_glycosylation_sequon" }, { "start_pos": 82, "end_pos": 84, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JBA3", "database": "UniProtKB", "url": 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"monoisotopic_mass": 60206.0 }, "refseq": { "ac": "XP_027254253", "name": "heat shock factor protein 2 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027254253" }, "gene_names": [ { "name": "LOC100752741", "type": "recommended", "evidence": [ { "id": "A0A9J7JBC3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBC3" } ] }, { "name": "LOC100752741", "type": "synonym", "evidence": [ { "id": "XP_027254253", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027254253" } ] } ], "protein_names": [ { "name": "Heat shock factor protein 2 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7JBC3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBC3/entry#names_and_taxonomy" } ] }, { "name": "heat shock factor protein 2 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027254253", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027254253" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027254253", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027254253" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JBC3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBC3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100752741", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBC3", "locus": {} } ], "crossref": [ { "id": "A0A9J7JBC3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JBC3", "database": "AlphaFoldDB", "categories": [] }, { "id": "100752741", "url": "https://www.ncbi.nlm.nih.gov/gene/100752741", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000232", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000232", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR010542", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010542", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036388", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036388", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036390", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036390", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100752741", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752741", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JBC3", "url": "https://www.orthodb.org/?gene=A0A9J7JBC3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10015", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10015", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10015:SF185", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10015:SF185", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00447", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00447", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF06546", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06546", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027254253", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027254253", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2QBV6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QBV6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2QBV6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2QBV6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FBQ9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBQ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FBQ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBQ9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JBC3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBC3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JBC3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBC3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKQSSNVPAFLSKLWTLVEETHTNEFITWSQNGQSFLVLDEQRFAKEILPKYFKHNNMASFVRQLNMYGFRKVVHIDSGIIKQERDGPVEFQHPYFKQGQDDLLENIKRKVSSSKPEENKIRQEDLTKIISSAQKVQIKQETIESRLSELKSENESLWKEVSELRAKHAQQQQVIRKIVQFIVTLVQNNQLVSLKRKRPLLLNTNGAQKKNLFQHIVKEPTDNHHHKVPHSRTEGLKSRERISDDIIIYDVTDDNADEETIPVIPETNEDVVSDPNCSQYPDIVIVEDDNEDEYAPVIQSGDQSELARESLSLGNAGGSPLMSSAVQLNAPSNMNSEDPVTMMDSILSDNINLLGKVELLDYLDSIDCSLEDFQAMLSGRQFSIDPDLLVDLFTSSVQMNPTDYINNTKSENKGLEATKSSVIQQVSEEGRKSKSKPDKQLIQYTAFPLLAFLDGNSASAIEQGSTAASSEVVPSVDKPIEVDELLDNNVDAEPTQSKIVRLEPLTETEASEATLFYLCELAPAPLDSEMPLLDS", "length": 535, "header": "tr|A0A9J7JBC3-1|A0A9J7JBC3_CRIGR Isoform 1 of Heat shock factor protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100752741 PE=3 SV=1 CANONICAL=A0A9J7JBC3-1" }, "isoforms": [ { "isoform_ac": "A0A8C2QBV6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBC3/entry#A0A8C2QBV6-1", "sequence": { "sequence": "MKQSSNVPAFLSKLWTLVEETHTNEFITWSQNGQSFLVLDEQRFAKEILPKYFKHNNMASFVRQLNMYGFRKVVHIDSGIIKQERDGPVEFQHPYFKQGQDDLLENIKRKVSSSKPEENKIRQEDLTKIISSAQKVQIKQETIESRLSELKSENESLWKEVSELRAKHAQQQQVIRKIVQFIVTLVQNNQLVSLKRKRPLLLNTNGAQKKNLFQHIVKEPTDNHHHKVPHSRTEGLKSRERISDDIIIYDVTDDNADEETIPVIPETNEDVVSDPNCSQYPDIVIVEDDNEDEYAPVIQSGDQSELARESLSLGNAGGSPLMSSAVQLNAPSNMNSEDPVTMMDSILSDNINLLGKVELLDYLDSIDCSLEDFQAMLSGRQFSIDPDLLVDSENKGLEATKSSVIQQVSEEGRKSKSKPDKQLIQYTAFPLLAFLDGNSASAIEQGSTAASSEVVPSVDKPIEVDELLDNNVDAEPTQSKIVRLEPLTETEASEATLFYLCELAPAPLDSEMPLLDS", "length": 517, "header": "tr|A0A8C2QBV6-1|A0A9J7JBC3_CRIGR Computationally mapped isoform of Heat shock factor protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100752741 PE=3 SV=1 CANONICAL=A0A9J7JBC3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FBQ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBC3/entry#A0A9J7FBQ9-1", "sequence": { "sequence": "MFVNDRPQEAELPKLFGDQNIMNKLQNGQSFLVLDEQRFAKEILPKYFKHNNMASFVRQLNMYGFRKVVHIDSGIIKQERDGPVEFQHPYFKQGQDDLLENIKRKVSSSKPEENKIRQEDLTKIISSAQKVQIKQETIESRLSELKSENESLWKEVSELRAKHAQQQQVIRKIVQFIVTLVQNNQLVSLKRKRPLLLNTNGAQKKNLFQHIVKEPTDNHHHKVPHSRTEGLKSRERISDDIIIYDVTDDNADEETIPVIPETNEDVVSDPNCSQYPDIVIVEDDNEDEYAPVIQSGDQSELARESLSLGNAGGSPLMSSAVQLNAPSNMNSEDPVTMMDSILSDNINLLGKVELLDYLDSIDCSLEDFQAMLSGRQFSIDPDLLVDLFTSSVQMNPTDYINNTKSENKGLEATKSSVIQQVSEEGRKSKSKPDKQLIQYTAFPLLAFLDGNSASAIEQGSTAASSEVVPSVDKPIEVDELLDNNVDAEPTQSKIVRLEPLTETEASEATLFYLCELAPAPLDSEMPLLDS", "length": 530, "header": "tr|A0A9J7FBQ9-1|A0A9J7JBC3_CRIGR Computationally mapped isoform of Heat shock factor protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100752741 PE=3 SV=1 CANONICAL=A0A9J7JBC3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JBC3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBC3/entry#A0A9J7JBC3-1", "sequence": { "sequence": "MKQSSNVPAFLSKLWTLVEETHTNEFITWSQNGQSFLVLDEQRFAKEILPKYFKHNNMASFVRQLNMYGFRKVVHIDSGIIKQERDGPVEFQHPYFKQGQDDLLENIKRKVSSSKPEENKIRQEDLTKIISSAQKVQIKQETIESRLSELKSENESLWKEVSELRAKHAQQQQVIRKIVQFIVTLVQNNQLVSLKRKRPLLLNTNGAQKKNLFQHIVKEPTDNHHHKVPHSRTEGLKSRERISDDIIIYDVTDDNADEETIPVIPETNEDVVSDPNCSQYPDIVIVEDDNEDEYAPVIQSGDQSELARESLSLGNAGGSPLMSSAVQLNAPSNMNSEDPVTMMDSILSDNINLLGKVELLDYLDSIDCSLEDFQAMLSGRQFSIDPDLLVDLFTSSVQMNPTDYINNTKSENKGLEATKSSVIQQVSEEGRKSKSKPDKQLIQYTAFPLLAFLDGNSASAIEQGSTAASSEVVPSVDKPIEVDELLDNNVDAEPTQSKIVRLEPLTETEASEATLFYLCELAPAPLDSEMPLLDS", "length": 535, "header": "tr|A0A9J7JBC3-1|A0A9J7JBC3_CRIGR Isoform 1 of Heat shock factor protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100752741 PE=3 SV=1 CANONICAL=A0A9J7JBC3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FBQ9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBQ9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FBQ9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBQ9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100752741", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752741", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 6, "go_terms": [ { "name": "DNA-binding transcription factor activity", "id": "GO:0003700", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003700", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JBC3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBC3" } ], "pmid": "" }, { "name": "sequence-specific DNA binding", "id": "GO:0043565", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043565", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JBC3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBC3" } ], "pmid": "" }, { "name": "identical protein binding", "id": "GO:0042802", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042802", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JBC3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBC3" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JBC3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBC3" } ], "pmid": "" }, { "name": "DNA-binding transcription activator activity, RNA polymerase II-specific", "id": "GO:0001228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001228", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JBC3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBC3" } ], "pmid": "" }, { "name": "RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding", "id": "GO:0001162", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001162", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JBC3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBC3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JBC3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBC3" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JBC3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBC3" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JBC3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBC3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JBC3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBC3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 154, "end_pos": 156, "annotation": "n_glycosylation_sequon" }, { "start_pos": 276, "end_pos": 278, "annotation": "n_glycosylation_sequon" }, { "start_pos": 406, "end_pos": 408, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JBC3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBC3" }, { "id": "PS00434", "database": 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"annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027253228", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253228" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JE71", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JE71" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100751610", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JE71", "locus": {} } ], "crossref": [ { "id": "A0A9J7JE71", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JE71", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd15626", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15626", "database": "CDD", "categories": [ "Protein 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"categories": [ "Protein Classification" ] }, { "id": "IPR019786", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019786", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019787", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019787", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036427", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036427", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043563", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043563", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100751610", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751610", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JE71", "url": "https://www.orthodb.org/?gene=A0A9J7JE71", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46386", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46386", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46386:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46386:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00439", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00439", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00628", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00628", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01342", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01342", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027253228", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253228", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FBR9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBR9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FBR9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBR9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FBY4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBY4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FBY4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBY4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JE71", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JE71", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JE71-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JE71-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIPRQRRGMWTSKVRQKKSFSVPRKPRTQNEDFSAALLPVTCGAVKGVLHKEKFKQGIFVKSIQSEDGDWYTPTEFEILGGFGRSKNWKLSLRCYNWPLKSLIQKDFLPNYPRKYGKRKKMQNSDKCEVCRNGGTLFFCDTCSRAFHEECHIPTVEAEITPWSCIFCRIQSLGSQQSLPESEVLQRQMVAQEQLKCEFVLLSIYCCSESSFFSKIPYYYYFRETPVGVKKMMWLDLIKKKLRERDYSHVEGFVQDMRLIFHNHRTTFKDPKFGQMGLGLESEFEKNFKEVFAIQDSNGNS", "length": 300, "header": "tr|A0A9J7JE71-1|A0A9J7JE71_CRIGR Isoform 1 of Nuclear body protein SP140-like protein isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100751610 PE=4 SV=1 CANONICAL=A0A9J7JE71-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FBR9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JE71/entry#A0A9J7FBR9-1", "sequence": { "sequence": "MIPRQRRGMWTSKVRQKKSFSVPRKPRTQNEDFSAALLPVTCGAVKGVLHKEKFKQGIFVKSIQSEDGDWYTPTEFEILGGFGRSKNWKLSLRCYNWPLKSLIQMQNSDKCEVCRNGGTLFFCDTCSRAFHEECHIPTVEAEITPWSCIFCRIQSLGSQQSLPESEVLQRQMVAQEQLKCEFVLLSIYCCSESSFFSKIPYYYYFRETPVGVKKMMWLDLIKKKLRERDYSHVEGFVQDMRLIFHNHRTTFKDPKFGQMGLGLESEFEKNFKEVFAIQDSNGNS", "length": 284, "header": "tr|A0A9J7FBR9-1|A0A9J7JE71_CRIGR Computationally mapped isoform of Nuclear body protein SP140-like protein isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100751610 PE=4 SV=1 CANONICAL=A0A9J7JE71-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FBY4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JE71/entry#A0A9J7FBY4-1", "sequence": { "sequence": "MKNSSCRSSPVPRKPRTQNEDFSAALLPVTCGAVKGVLHKEKFKQGIFVKSIQSEDGDWYTPTEFEILGGFGRSKNWKLSLRCYNWPLKSLIQKDFLPNYPRKYGKRKKMQNSDKCEVCRNGGTLFFCDTCSRAFHEECHIPTVEAEITPWSCIFCRIQSLGSQQSLPESEVLQRQMVAQEQLKCEFVLLSIYCCSESSFFSKIPYYYYFRETPVGVKKMMWLDLIKKKLRERDYSHVEGFVQDMRLIFHNHRTTFKDPKFGQMGLGLESEFEKNFKEVFAIQDSNGNS", "length": 289, "header": "tr|A0A9J7FBY4-1|A0A9J7JE71_CRIGR Computationally mapped isoform of Nuclear body protein SP140-like protein isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100751610 PE=4 SV=1 CANONICAL=A0A9J7JE71-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JE71-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JE71/entry#A0A9J7JE71-1", "sequence": { "sequence": "MIPRQRRGMWTSKVRQKKSFSVPRKPRTQNEDFSAALLPVTCGAVKGVLHKEKFKQGIFVKSIQSEDGDWYTPTEFEILGGFGRSKNWKLSLRCYNWPLKSLIQKDFLPNYPRKYGKRKKMQNSDKCEVCRNGGTLFFCDTCSRAFHEECHIPTVEAEITPWSCIFCRIQSLGSQQSLPESEVLQRQMVAQEQLKCEFVLLSIYCCSESSFFSKIPYYYYFRETPVGVKKMMWLDLIKKKLRERDYSHVEGFVQDMRLIFHNHRTTFKDPKFGQMGLGLESEFEKNFKEVFAIQDSNGNS", "length": 300, "header": "tr|A0A9J7JE71-1|A0A9J7JE71_CRIGR Isoform 1 of Nuclear body protein SP140-like protein isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100751610 PE=4 SV=1 CANONICAL=A0A9J7JE71-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FBR9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBR9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FBR9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBR9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100751610", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751610", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nuclear lumen", "id": "GO:0031981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031981", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JE71", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JE71" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JE71", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JE71" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JE71", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JE71" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JE71", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JE71" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JE71", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JE71" }, { "id": "PS50016", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50016" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PHD-type", "eco_id": "ECO_0000259", "start_pos": 124, "end_pos": 170, "start_aa": "Ser", "end_aa": "Gln", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7JE71", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JE71" }, { "id": "PS50864", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50864" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SAND", "eco_id": "ECO_0000259", "start_pos": 28, "end_pos": 109, "start_aa": "Thr", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7JEP9-1", "uniprot_ac": "A0A9J7JEP9", "uniprot_id": "A0A9J7JEP9_CRIGR", "mass": { "chemical_mass": 30786.0, "monoisotopic_mass": 30786.0 }, "refseq": { "ac": "XP_003497657", "name": "centromere protein R isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003497657" }, "gene_names": [ { "name": "Itgb3bp", "type": "recommended", "evidence": [ { "id": "A0A9J7JEP9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEP9" } ] }, { "name": "Itgb3bp", "type": "synonym", "evidence": [ { "id": "XP_003497657", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003497657" } ] } ], "protein_names": [ { "name": "Centromere protein R isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7JEP9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEP9/entry#names_and_taxonomy" } ] }, { "name": "centromere protein R isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003497657", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003497657" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613655.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_003497657.3. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003497657", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003497657" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JEP9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEP9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Itgb3bp", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEP9", "locus": {} } ], "crossref": [ { "id": "A0A9J7JEP9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JEP9", "database": "AlphaFoldDB", "categories": [] }, { "id": "100757281", "url": "https://www.ncbi.nlm.nih.gov/gene/100757281", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR009601", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009601", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100757281", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757281", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JEP9", "url": "https://www.orthodb.org/?gene=A0A9J7JEP9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15581", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15581", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15581:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15581:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF06729", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06729", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003497657", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003497657", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FCI1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCI1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FCI1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCI1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FFX8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFX8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FFX8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFX8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GTV7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GTV7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GTV7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GTV7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JEP9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEP9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JEP9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEP9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRGPLTWRVQSQHCARLLLGCFIWNSESGLAMARWGAGLASLHTPFLGLFISRRLFPADRGMCDTASSAYCAGFFASAFAVSQLVLPSNRGPSQSPGMSVRRSLKLDDQFEEKSFSPSKIRRKKSITAYSPTTGTYQMSPFSSPTTRKEQECGNRPSNGKRKQNNLSSPTRKKSTAKDSDEFMVLLSKIERSSEKTMEIMKNLRSIQALENNRQLEDLIGVSLAPCSLKREVEKTRELMTKVTKQKLFDKKNSRIHPKEHHLDSFEFLKAILN", "length": 273, "header": "tr|A0A9J7JEP9-1|A0A9J7JEP9_CRIGR Isoform 1 of Centromere protein R isoform X1 OS=Cricetulus griseus OX=10029 GN=Itgb3bp PE=4 SV=1 CANONICAL=A0A9J7JEP9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FCI1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEP9/entry#A0A9J7FCI1-1", "sequence": { "sequence": "MQLSATIFMVLLSKIERSSEKTMEIMKNLRSIQALENNRQLEDLIGVSLAPCSLKREVEKTRELMTKVTKQKLFDKKNSRIHPKEHHLDSFEFLKAILN", "length": 99, "header": "tr|A0A9J7FCI1-1|A0A9J7JEP9_CRIGR Computationally mapped isoform of Centromere protein R isoform X1 OS=Cricetulus griseus OX=10029 GN=Itgb3bp PE=4 SV=1 CANONICAL=A0A9J7JEP9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FFX8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEP9/entry#A0A9J7FFX8-1", "sequence": { "sequence": "MSPFSSPTTRKEQECGNRPSNGKRKQNNLSSPTRKKSTAKDSDEFMVLLSKIERSSEKTMEIMKNLRSIQALENNRQLEDLIGVSLAPCSLKREVEKTRELMTKVTKQKLFDKKNSRIHPKEHHLDSFEFLKAILN", "length": 136, "header": "tr|A0A9J7FFX8-1|A0A9J7JEP9_CRIGR Computationally mapped isoform of Centromere protein R isoform X1 OS=Cricetulus griseus OX=10029 GN=Itgb3bp PE=4 SV=1 CANONICAL=A0A9J7JEP9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GTV7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEP9/entry#A0A9J7GTV7-1", "sequence": { "sequence": "MVLLSKIERSSEKTMEIMKNLRSIQALENNRQLEDLIGVSLAPCSLKREVEKTRELMTKVTKQKLFDKKNSRIHPKEHHLDSFEFLKAILN", "length": 91, "header": "tr|A0A9J7GTV7-1|A0A9J7JEP9_CRIGR Computationally mapped isoform of Centromere protein R isoform X1 OS=Cricetulus griseus OX=10029 GN=Itgb3bp PE=4 SV=1 CANONICAL=A0A9J7JEP9-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JEP9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEP9/entry#A0A9J7JEP9-1", "sequence": { "sequence": "MRGPLTWRVQSQHCARLLLGCFIWNSESGLAMARWGAGLASLHTPFLGLFISRRLFPADRGMCDTASSAYCAGFFASAFAVSQLVLPSNRGPSQSPGMSVRRSLKLDDQFEEKSFSPSKIRRKKSITAYSPTTGTYQMSPFSSPTTRKEQECGNRPSNGKRKQNNLSSPTRKKSTAKDSDEFMVLLSKIERSSEKTMEIMKNLRSIQALENNRQLEDLIGVSLAPCSLKREVEKTRELMTKVTKQKLFDKKNSRIHPKEHHLDSFEFLKAILN", "length": 273, "header": "tr|A0A9J7JEP9-1|A0A9J7JEP9_CRIGR Isoform 1 of Centromere protein R isoform X1 OS=Cricetulus griseus OX=10029 GN=Itgb3bp PE=4 SV=1 CANONICAL=A0A9J7JEP9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FCI1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCI1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100757281", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757281", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JEP9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEP9" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JEP9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEP9" } ], "pmid": "" }, { "name": "CENP-A containing chromatin assembly", "id": "GO:0034080", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034080", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JEP9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEP9" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 165, "end_pos": 167, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], 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This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027256342", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256342" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J978", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J978" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Trappc8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J978", "locus": {} } ], "crossref": [ { "id": "100750879", "url": "https://www.ncbi.nlm.nih.gov/gene/100750879", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011990", "database": "InterPro", "categories": [ "Protein Classification" 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"MAQCVQSVQELIPDSFVPCVAALCSDEAERLTRLNHLSFAELLKPFSRLTSEVHMRDPNNQLHVIKNLKIAVSNIVTQPPQPGAIGKLLNDVVSGSQPAEGSVPNVISAGDYDLNISDRSIKASVPWYSNWKDTFMELKESSLYTATTPWFESYRETFLQSMPASDHEFLNHYLACMLVASSGEAEPMEQFSKLSQEQHRIQHNSDYSYPKWFIPNTLKYYVLLHDVTSGDEQRAESIYEEMKQKYGTQGCYLLKINSRAPNRTSDEQIPDPWSQYLQKNSIQNQESYEDGPCIMTSNKNSDSNLLSLDGLDNEVKVDGLPNNFRVHPLQLDQCGDPLNSTDGSDHAKSASVQETKKASTGVIHGACLTLTDHDRIRQFIQEFTFRGLLPHIEKTIRQLNDQLISRKGLSRSLFSATKKWFSGSKVPEKSINELKNTSGLLYPPEAPELQIRKMADLCFLVQHYDLAYSCYHTAKKDFLNDQAMLYAAGALEMAAVSAFLQPGAPRPYPAHYMDTAIQTYRDICKNMVLAERCVLLSAEILKSQSKYSEAAALLIRLTSEDSDLRSALLLEQAAHCFINMKSPMVRKYAFHMILAGHRFSKAGQKKHALRCYCQAMQVYKGKGWSLAEDHINFTIGRQSYTLRQLDNAVSAFRHILINESKQSAAQQGAFLREYLYVYKNVNQLSPDGPLPQLPLPYINSSATRVFFGHDRRPADGEKQAATHISLDQEYDSESSQQWRELEEHVVAVANKGVIPSSFYPTQYCLNSYSDNSRFPLAVVEEPITVEVAFRNPLKVPLLLSDLSLLWKFQPKDVNGKDIEVREQVTGEPEMIGTEVISEFLINSEESKVARLKLFPHHIGELHILGVVYNLGTIQGSVTVDGIGALPGCHTGKHSLSMSVRGRQDLEIQGPRLNNTKEEKTSVKYGPDRRLDPVVTEEMPLLEVFFIHFPTGLLCGEIRKAYVEFVNVSKCPLTGLKVVSKRPEFFTFGVNTAALTPLSPSTSENCSAYKTVVTGSPSTGTALVSSASSVDFGTSTGQQLEAIPVPLPDSVLLPGASVQLPMWLRGPDEEGVHEINFLFYYESVKKQPKRRHRILRHTAVICTSRSLNVRATVCRSNSLEDEEGRGGNMLVFVDVENTNTSEAGVKEFHMVQVSSSSKHWQLHKSVNISENKDAKLASREKGKFCFKAVRCKQKEAAMQSSEKYTFADIIFGNEQIISSASPCADFFYRSLSSELKKPQDPEKHAAEDAVQLIQKCSEVDLNIVILWKAYVVEDNKQLILEGQHHVVLRTLGKEAFSQFQKQEPPEMELLKFFRPENTTFSTRPSVEQLSNLIKTSLHYPESFHHPFHQKSLCLVPVTLLLSNCSKADVDVIVDLRHKTTSPEALETHGSFTWLGQTQYKLQLKSEETHSLQLKACFVHTGVYNLGTPRVFAKLSDQVTVFETSQQNSMPALIIINNA", "length": 1457, "header": "tr|A0A9J7J978-1|A0A9J7J978_CRIGR Isoform 1 of Trafficking protein particle complex subunit 8 isoform X3 OS=Cricetulus griseus OX=10029 GN=Trappc8 PE=4 SV=1 CANONICAL=A0A9J7J978-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FCK3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J978/entry#A0A9J7FCK3-1", "sequence": { "sequence": "MAQCVQSVQELIPDSFVPCVAALCSDEAERLTRLNHLSFAELLKPFSRLTSEVHMRDPNNQLHVIKNLKIAVSNIVTQPPQPGAIGKLLNDVVSGSQPAEGSVPNVISAGDYDLNISATTPWFESYRETFLQSMPASDHEFLNHYLACMLVASSGEAEPMEQFSKLSQEQHRIQHNSDYSYPKWFIPNTLKYYVLLHDVTSGDEQRAESIYEEMKQKYGTQGCYLLKINSRAPNRTSDEQIPDPWSQYLQKNSIQNQESYEDGPCIMTSNKNSDSNLLSLDGLDNEVKDGLPNNFRVHPLQLDQCGDPLNSTDGSDHAKSASVQETKKASTGVIHGACLTLTDHDRIRQFIQEFTFRGLLPHIEKTIRQLNDQLISRKGLSRSLFSATKKWFSGSKVPEKSINELKNTSGLLYPPEAPELQIRKMADLCFLVQHYDLAYSCYHTAKKDFLNDQAMLYAAGALEMAAVSAFLQPGAPRPYPAHYMDTAIQTYRDICKNMVLAERCVLLSAEILKSQSKYSEAAALLIRLTSEDSDLRSALLLEQAAHCFINMKSPMVRKYAFHMILAGHRFSKAGQKKHALRCYCQAMQVYKGKGWSLAEDHINFTIGRQSYTLRQLDNAVSAFRHILINESKQSAAQQGAFLREYLYVYKNVNQLSPDGPLPQLPLPYINSSATRVFFGHDRRPADGEKQAATHISLDQEYDSESSQQWRELEEHVVAVANKGVIPSSFYPTQYCLNSYSDNSRFPLAVVEEPITVEVAFRNPLKVPLLLSDLSLLWKFQPKDVNGKDIEVREQVTGEPEMIGTEVISEFLINSEESKVARLKLFPHHIGELHILGVVYNLGTIQGSVTVDGIGALPGCHTGKHSLSMSVRGRQDLEIQGPRLNNTKEEKTSVKYGPDRRLDPVVTEEMPLLEVFFIHFPTGLLCGEIRKAYVEFVNVSKCPLTGLKVVSKRPEFFTFGVNTAALTPLSPSTSENCSAYKTVVTGSPSTGTALVSSASSVDFGTSTGQQLEAIPVPLPDSVLLPGASVQLPMWLRGPDEEGVHEINFLFYYESVKKQPKRRHRILRHTAVICTSRSLNVRATVCRSNSLEDEEGRGGNMLVFVDVENTNTSEAGVKEFHMVQVSSSSKHWQLHKSVNISENKDAKLASREKGKFCFKAVRCKQKEAAMQSSEKYTFADIIFGNEQIISSASPCADFFYRSLSSELKKPQDPEKHAAEDAVQLIQKCSEVDLNIVILWKAYVVEDNKQLILEGQHHVVLRTLGKEAFSQFQKQEPPEMELLKFFRPENTTFSTRPSVEQLSNLIKTSLHYPESFHHPFHQKSLCLVPVTLLLSNCSKADVDVIVDLRHKTTSPEALETHGSFTWLGQTQYKLQLKSEETHSLQLKACFVHTGVYNLGTPRVFAKLSDQVTVFETSQQNSMPALIIINNA", "length": 1428, "header": "tr|A0A9J7FCK3-1|A0A9J7J978_CRIGR Computationally mapped isoform of Trafficking protein particle complex subunit 8 isoform X3 OS=Cricetulus griseus OX=10029 GN=Trappc8 PE=4 SV=1 CANONICAL=A0A9J7J978-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GQF0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J978/entry#A0A9J7GQF0-1", "sequence": { "sequence": "MKQKYGTQGCYLLKINSRAPNRTSDEQIPDPWSQYLQKNSIQNQESYEDGPCIMTSNKNSDSNLLSLDGLDNEVKVDGLPNNFRVHPLQLDQCGDPLNSTDGSDHAKSASVQETKKASTGVIHGACLTLTDHDRIRQFIQEFTFRGLLPHIEKTIRQLNDQLISRKGLSRSLFSATKKWFSGSKVPEKSINELKNTSGLLYPPEAPELQIRKMADLCFLVQHYDLAYSCYHTAKKDFLNDQAMLYAAGALEMAAVSAFLQPGAPRPYPAHYMDTAIQTYRDICKNMVLAERCVLLSAEILKSQSKYSEAAALLIRLTSEDSDLRSALLLEQAAHCFINMKSPMVRKYAFHMILAGHRFSKAGQKKHALRCYCQAMQVYKGKGWSLAEDHINFTIGRQSYTLRQLDNAVSAFRHILINESKQSAAQQGAFLREYLYVYKNVNQLSPDGPLPQLPLPYINSSATRVFFGHDRRPADGEKQAATHISLDQEYDSESSQQWRELEEHVVAVANKGVIPSSFYPTQYCLNSYSDNSRFPLAVVEEPITVEVAFRNPLKVPLLLSDLSLLWKFQPKDVNGKDIEVREQVTGEPEMIGTEVISEFLINSEESKVARLKLFPHHIGELHILGVVYNLGTIQGSVTVDGIGALPGCHTGKHSLSMSVRGRQDLEIQGPRLNNTKEEKTSVKYGPDRRLDPVVTEEMPLLEVFFIHFPTGLLCGEIRKAYVEFVNVSKCPLTGLKVVSKRPEFFTFGVNTAALTPLSPSTSENCSAYKTVVTGSPSTGTALVSSASSVDFGTSTGQQLEAIPVPLPDSVLLPGASVQLPMWLRGPDEEGVHEINFLFYYESVKKQPKRRHRILRHTAVICTSRSLNVRATVCRSNSLEDEEGRGGNMLVFVDVENTNTSEAGVKEFHMVQVSSSSKHWQLHKSVNISENKDAKLASREKGKFCFKAVRCKQKEAAMQSSEKYTFADIIFGNEQIISSASPCADFFYRSLSSELKKPQDPEKHAAEDAVQLIQKCSEVDLNIVILWKAYVVEDNKQLILEGQHHVVLRTLGKEAFSQFQKQEPPEMELLKFFRPENTTFSTRPSVEQLSNLIKTSLHYPESFHHPFHQKSLCLVPVTLLLSNCSKADVDVIVDLRHKTTSPEALETHGSFTWLGQTQYKLQLKSEETHSLQLKACFVHTGVYNLGTPRVFAKLSDQVTVFETSQQNSMPALIIINNA", "length": 1216, "header": "tr|A0A9J7GQF0-1|A0A9J7J978_CRIGR Computationally mapped isoform of Trafficking protein particle complex subunit 8 isoform X3 OS=Cricetulus griseus OX=10029 GN=Trappc8 PE=4 SV=1 CANONICAL=A0A9J7J978-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J978-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J978/entry#A0A9J7J978-1", "sequence": { "sequence": "MAQCVQSVQELIPDSFVPCVAALCSDEAERLTRLNHLSFAELLKPFSRLTSEVHMRDPNNQLHVIKNLKIAVSNIVTQPPQPGAIGKLLNDVVSGSQPAEGSVPNVISAGDYDLNISDRSIKASVPWYSNWKDTFMELKESSLYTATTPWFESYRETFLQSMPASDHEFLNHYLACMLVASSGEAEPMEQFSKLSQEQHRIQHNSDYSYPKWFIPNTLKYYVLLHDVTSGDEQRAESIYEEMKQKYGTQGCYLLKINSRAPNRTSDEQIPDPWSQYLQKNSIQNQESYEDGPCIMTSNKNSDSNLLSLDGLDNEVKVDGLPNNFRVHPLQLDQCGDPLNSTDGSDHAKSASVQETKKASTGVIHGACLTLTDHDRIRQFIQEFTFRGLLPHIEKTIRQLNDQLISRKGLSRSLFSATKKWFSGSKVPEKSINELKNTSGLLYPPEAPELQIRKMADLCFLVQHYDLAYSCYHTAKKDFLNDQAMLYAAGALEMAAVSAFLQPGAPRPYPAHYMDTAIQTYRDICKNMVLAERCVLLSAEILKSQSKYSEAAALLIRLTSEDSDLRSALLLEQAAHCFINMKSPMVRKYAFHMILAGHRFSKAGQKKHALRCYCQAMQVYKGKGWSLAEDHINFTIGRQSYTLRQLDNAVSAFRHILINESKQSAAQQGAFLREYLYVYKNVNQLSPDGPLPQLPLPYINSSATRVFFGHDRRPADGEKQAATHISLDQEYDSESSQQWRELEEHVVAVANKGVIPSSFYPTQYCLNSYSDNSRFPLAVVEEPITVEVAFRNPLKVPLLLSDLSLLWKFQPKDVNGKDIEVREQVTGEPEMIGTEVISEFLINSEESKVARLKLFPHHIGELHILGVVYNLGTIQGSVTVDGIGALPGCHTGKHSLSMSVRGRQDLEIQGPRLNNTKEEKTSVKYGPDRRLDPVVTEEMPLLEVFFIHFPTGLLCGEIRKAYVEFVNVSKCPLTGLKVVSKRPEFFTFGVNTAALTPLSPSTSENCSAYKTVVTGSPSTGTALVSSASSVDFGTSTGQQLEAIPVPLPDSVLLPGASVQLPMWLRGPDEEGVHEINFLFYYESVKKQPKRRHRILRHTAVICTSRSLNVRATVCRSNSLEDEEGRGGNMLVFVDVENTNTSEAGVKEFHMVQVSSSSKHWQLHKSVNISENKDAKLASREKGKFCFKAVRCKQKEAAMQSSEKYTFADIIFGNEQIISSASPCADFFYRSLSSELKKPQDPEKHAAEDAVQLIQKCSEVDLNIVILWKAYVVEDNKQLILEGQHHVVLRTLGKEAFSQFQKQEPPEMELLKFFRPENTTFSTRPSVEQLSNLIKTSLHYPESFHHPFHQKSLCLVPVTLLLSNCSKADVDVIVDLRHKTTSPEALETHGSFTWLGQTQYKLQLKSEETHSLQLKACFVHTGVYNLGTPRVFAKLSDQVTVFETSQQNSMPALIIINNA", "length": 1457, "header": "tr|A0A9J7J978-1|A0A9J7J978_CRIGR Isoform 1 of Trafficking protein particle complex subunit 8 isoform X3 OS=Cricetulus griseus OX=10029 GN=Trappc8 PE=4 SV=1 CANONICAL=A0A9J7J978-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JER0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J978/entry#A0A9J7JER0-1", "sequence": { "sequence": "MAQCVQSVQELIPDSFVPCVAALCSDEAERLTRLNHLSFAELLKPFSRLTSEVHMRDPNNQLHVIKNLKIAVSNIVTQPPQPGAIGKLLNDVVSGSQPAEGSVPNVISAGDYDLNISATTPWFESYRETFLQSMPASDHEFLNHYLACMLVASSGEAEPMEQFSKLSQEQHRIQHNSDYSYPKWFIPNTLKYYVLLHDVTSGDEQRAESIYEEMKQKYGTQGCYLLKINSRAPNRTSDEQIPDPWSQYLQKNSIQNQESYEDGPCIMTSNKNSDSNLLSLDGLDNEVKVDGLPNNFRVHPLQLDQCGDPLNSTDGSDHAKSASVQETKKASTGVIHGACLTLTDHDRIRQFIQEFTFRGLLPHIEKTIRQLNDQLISRKGLSRSLFSATKKWFSGSKVPEKSINELKNTSGLLYPPEAPELQIRKMADLCFLVQHYDLAYSCYHTAKKDFLNDQAMLYAAGALEMAAVSAFLQPGAPRPYPAHYMDTAIQTYRDICKNMVLAERCVLLSAEILKSQSKYSEAAALLIRLTSEDSDLRSALLLEQAAHCFINMKSPMVRKYAFHMILAGHRFSKAGQKKHALRCYCQAMQVYKGKGWSLAEDHINFTIGRQSYTLRQLDNAVSAFRHILINESKQSAAQQGAFLREYLYVYKNVNQLSPDGPLPQLPLPYINSSATRVFFGHDRRPADGEKQAATHISLDQEYDSESSQQWRELEEHVVAVANKGVIPSSFYPTQYCLNSYSDNSRFPLAVVEEPITVEVAFRNPLKVPLLLSDLSLLWKFQPKDVNGKDIEVREQVTGEPEMIGTEVISEFLINSEESKVARLKLFPHHIGELHILGVVYNLGTIQGSVTVDGIGALPGCHTGKHSLSMSVRGRQDLEIQGPRLNNTKEEKTSVKYGPDRRLDPVVTEEMPLLEVFFIHFPTGLLCGEIRKAYVEFVNVSKCPLTGLKVVSKRPEFFTFGVNTAALTPLSPSTSENCSAYKTVVTGSPSTGTALVSSASSVDFGTSTGQQLEAIPVPLPDSVLLPGASVQLPMWLRGPDEEGVHEINFLFYYESVKKQPKRRHRILRHTAVICTSRSLNVRATVCRSNSLEDEEGRGGNMLVFVDVENTNTSEAGVKEFHMVQVSSSSKHWQLHKSVNISENKDAKLASREKGKFCFKAVRCKQKEAAMQSSEKYTFADIIFGNEQIISSASPCADFFYRSLSSELKKPQDPEKHAAEDAVQLIQKCSEVDLNIVILWKAYVVEDNKQLILEGQHHVVLRTLGKEAFSQFQKQEPPEMELLKFFRPENTTFSTRPSVEQLSNLIKTSLHYPESFHHPFHQKSLCLVPVTLLLSNCSKADVDVIVDLRHKTTSPEALETHGSFTWLGQTQYKLQLKSEETHSLQLKACFVHTGVYNLGTPRVFAKLSDQVTVFETSQQNSMPALIIINNA", "length": 1429, "header": "tr|A0A9J7JER0-1|A0A9J7JER0_CRIGR Computationally mapped isoform of Trafficking protein particle complex subunit 8 isoform X5 OS=Cricetulus griseus OX=10029 GN=Trappc8 PE=4 SV=1 CANONICAL=A0A9J7J978-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JEY8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J978/entry#A0A9J7JEY8-1", "sequence": { "sequence": "MAQCVQSVQELIPDSFVPCVAALCSDEAERLTRLNHLSFAELLKPFSRLTSEVHMRDPNNQLHVIKNLKIAVSNIVTQPPQPGAIGKLLNDVVSGSQPAEGSVPNVISAGDYDLNISDRSIKASVPWYSNWKDTFMELKESSLYTATTPWFESYRETFLQSMPASDHEFLNHYLACMLVASSGEAEPMEQFSKLSQEQHRIQHNSDYSYPKWFIPNTLKYYVLLHDVTSGDEQRAESIYEEMKQKYGTQGCYLLKINSRAPNRTSDEQIPDPWSQYLQKNSIQNQESYEDGPCIMTSNKNSDSNLLSLDGLDNEVKDGLPNNFRVHPLQLDQCGDPLNSTDGSDHAKSASVQETKKASTGVIHGACLTLTDHDRIRQFIQEFTFRGLLPHIEKTIRQLNDQLISRKGLSRSLFSATKKWFSGSKVPEKSINELKNTSGLLYPPEAPELQIRKMADLCFLVQHYDLAYSCYHTAKKDFLNDQAMLYAAGALEMAAVSAFLQPGAPRPYPAHYMDTAIQTYRDICKNMVLAERCVLLSAEILKSQSKYSEAAALLIRLTSEDSDLRSALLLEQAAHCFINMKSPMVRKYAFHMILAGHRFSKAGQKKHALRCYCQAMQVYKGKGWSLAEDHINFTIGRQSYTLRQLDNAVSAFRHILINESKQSAAQQGAFLREYLYVYKNVNQLSPDGPLPQLPLPYINSSATRVFFGHDRRPADGEKQAATHISLDQEYDSESSQQWRELEEHVVAVANKGVIPSSFYPTQYCLNSYSDNSRFPLAVVEEPITVEVAFRNPLKVPLLLSDLSLLWKFQPKDVNGKDIEVREQVTGEPEMIGTEVISEFLINSEESKVARLKLFPHHIGELHILGVVYNLGTIQGSVTVDGIGALPGCHTGKHSLSMSVRGRQDLEIQGPRLNNTKEEKTSVKYGPDRRLDPVVTEEMPLLEVFFIHFPTGLLCGEIRKAYVEFVNVSKCPLTGLKVVSKRPEFFTFGVNTAALTPLSPSTSENCSAYKTVVTGSPSTGTALVSSASSVDFGTSTGQQLEAIPVPLPDSVLLPGASVQLPMWLRGPDEEGVHEINFLFYYESVKKQPKRRHRILRHTAVICTSRSLNVRATVCRSNSLEDEEGRGGNMLVFVDVENTNTSEAGVKEFHMVQVSSSSKHWQLHKSVNISENKDAKLASREKGKFCFKAVRCKQKEAAMQSSEKYTFADIIFGNEQIISSASPCADFFYRSLSSELKKPQDPEKHAAEDAVQLIQKCSEVDLNIVILWKAYVVEDNKQLILEGQHHVVLRTLGKEAFSQFQKQEPPEMELLKFFRPENTTFSTRPSVEQLSNLIKTSLHYPESFHHPFHQKSLCLVPVTLLLSNCSKADVDVIVDLRHKTTSPEALETHGSFTWLGQTQYKLQLKSEETHSLQLKACFVHTGVYNLGTPRVFAKLSDQVTVFETSQQNSMPALIIINNA", "length": 1456, "header": "tr|A0A9J7JEY8-1|A0A9J7JEY8_CRIGR Computationally mapped isoform of Trafficking protein particle complex subunit 8 isoform X4 OS=Cricetulus griseus OX=10029 GN=Trappc8 PE=4 SV=1 CANONICAL=A0A9J7J978-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FCK3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCK3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FCK3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCK3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100750879", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100750879", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "TRAPPIII protein complex", "id": "GO:1990072", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990072", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J978", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J978" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1004, "end_pos": 1006, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1138, "end_pos": 1140, "annotation": "n_glycosylation_sequon" }, { "start_pos": 115, "end_pos": 117, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1166, "end_pos": 1168, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1316, "end_pos": 1318, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1362, "end_pos": 1364, "annotation": "n_glycosylation_sequon" }, { "start_pos": 262, "end_pos": 264, "annotation": "n_glycosylation_sequon" }, { "start_pos": 339, "end_pos": 341, "annotation": "n_glycosylation_sequon" }, { "start_pos": 436, "end_pos": 438, "annotation": "n_glycosylation_sequon" }, { "start_pos": 632, "end_pos": 634, "annotation": "n_glycosylation_sequon" }, { "start_pos": 658, "end_pos": 660, "annotation": "n_glycosylation_sequon" }, { "start_pos": 699, "end_pos": 701, "annotation": "n_glycosylation_sequon" }, { "start_pos": 913, "end_pos": 915, "annotation": "n_glycosylation_sequon" }, { "start_pos": 966, "end_pos": 968, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7J978", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J978" }, { "id": "PF24542", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24542" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TPPC8 C-terminal Ig-like", "eco_id": "ECO_0000259", "start_pos": 1331, "end_pos": 1433, "start_aa": "Leu", "end_aa": "Leu", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7J978", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J978" }, { "id": "PF24545", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF24545" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TPPC8 first Ig-like", "eco_id": "ECO_0000259", "start_pos": 727, "end_pos": 953, 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"http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43364", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43364:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43364:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00248", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00248", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027255644", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027255644", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FDA0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDA0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FDA0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDA0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JC84", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JC84", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JC84-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JC84-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVDSVDGFSYVEPFLHLWDGAYLIWIFLKGCPALSWQDLTVTLFCVLFVYFGQHTVSSQGHSLDVTSSAAVVRAFLQGGHNEIDTAFVYAEGQSESILGGLGLGLAPSGHKVEIATKSVPTLGTSSTLDNIRFQLETSLKRLRCPQVDLFYLHMPDHSTPIEDTLKTCHQLHQEGKFVELGLSNYSSWEVAEICTLCKKNGWILPTVYQGMYNATTRQVEKELFPCLRHFGLRFYAYTPLAGGLLTGKYKYEVENGKQPLSRLFGKKWDYFYRDCFWKENYLKGIDLVKKSLNTTYGGSAPSLTSAALRWMYHHSQLQGNRGDAVILGMSSLEQLEQNLAAAQEGPLEPAVVDAFNQAWNLVAHECPNYFR", "length": 371, "header": "tr|A0A9J7JC84-1|A0A9J7JC84_CRIGR Isoform 1 of Aflatoxin B1 aldehyde reductase member 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100751467 PE=3 SV=1 CANONICAL=A0A9J7JC84-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FDA0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JC84/entry#A0A9J7FDA0-1", "sequence": { "sequence": "MVDSVDGFSYVEPFLHLWDGAYLICLHLSLFPVLGTDMSRPLSQNLPATVLGAMELGHSLDVTSSAAVVRAFLQGGHNEIDTAFVYAEGQSESILGGLGLGLAPSGHKVEIATKSVPTLGTSSTLDNIRFQLETSLKRLRCPQVDLFYLHMPDHSTPIEDTLKTCHQLHQEGKFVELGLSNYSSWEVAEICTLCKKNGWILPTVYQGMYNATTRQVEKELFPCLRHFGLRFYAYTPLAGGLLTGKYKYEVENGKQPLSRLFGKKWDYFYRDCFWKENYLKGIDLVKKSLNTTYGGSAPSLTSAALRWMYHHSQLQGNRGDAVILGMSSLEQLEQNLAAAQEGPLEPAVVDAFNQAWNLVAHECPNYFR", "length": 368, "header": "tr|A0A9J7FDA0-1|A0A9J7JC84_CRIGR Computationally mapped isoform of Aflatoxin B1 aldehyde reductase member 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100751467 PE=3 SV=1 CANONICAL=A0A9J7JC84-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JC84-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JC84/entry#A0A9J7JC84-1", "sequence": { "sequence": "MVDSVDGFSYVEPFLHLWDGAYLIWIFLKGCPALSWQDLTVTLFCVLFVYFGQHTVSSQGHSLDVTSSAAVVRAFLQGGHNEIDTAFVYAEGQSESILGGLGLGLAPSGHKVEIATKSVPTLGTSSTLDNIRFQLETSLKRLRCPQVDLFYLHMPDHSTPIEDTLKTCHQLHQEGKFVELGLSNYSSWEVAEICTLCKKNGWILPTVYQGMYNATTRQVEKELFPCLRHFGLRFYAYTPLAGGLLTGKYKYEVENGKQPLSRLFGKKWDYFYRDCFWKENYLKGIDLVKKSLNTTYGGSAPSLTSAALRWMYHHSQLQGNRGDAVILGMSSLEQLEQNLAAAQEGPLEPAVVDAFNQAWNLVAHECPNYFR", "length": 371, "header": "tr|A0A9J7JC84-1|A0A9J7JC84_CRIGR Isoform 1 of Aflatoxin B1 aldehyde reductase member 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100751467 PE=3 SV=1 CANONICAL=A0A9J7JC84-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FDA0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDA0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FDA0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDA0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100751467", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751467", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "oxidoreductase activity", "id": "GO:0016491", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016491", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JC84", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JC84" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 184, "end_pos": 186, "annotation": "n_glycosylation_sequon" }, { "start_pos": 213, "end_pos": 215, "annotation": "n_glycosylation_sequon" }, { "start_pos": 293, "end_pos": 295, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JC84", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JC84" }, { "id": "PF00248", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00248" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "NADP-dependent oxidoreductase", "eco_id": "ECO_0000259", "start_pos": 51, "end_pos": 359, "start_aa": "Phe", "end_aa": "Trp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 184, "end_pos": 186 }, { "start_pos": 213, "end_pos": 215 }, { "start_pos": 293, "end_pos": 295 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7JCK7-1", "uniprot_ac": "A0A9J7JCK7", "uniprot_id": "A0A9J7JCK7_CRIGR", "mass": { "chemical_mass": 43856.0, "monoisotopic_mass": 43856.0 }, "refseq": { "ac": "XP_003503508", "name": "WD repeat-containing protein 31 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503508" }, "gene_names": [ { "name": "Wdr31", "type": "recommended", "evidence": [ { "id": "A0A9J7JCK7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCK7" } ] }, { "name": "Wdr31", "type": "synonym", "evidence": [ { "id": "XP_003503508", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503508" } ] } ], "protein_names": [ { "name": "WD repeat-containing protein 31 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003503508", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503508" }, { "id": "A0A9J7JCK7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCK7/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613973.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Apr 30, 2014 this sequence version replaced XP_003503508.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003503508", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503508" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JCK7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCK7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Wdr31", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCK7", "locus": {} } ], "crossref": [ { "id": "cd00200", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00200", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100752912", "url": "https://www.ncbi.nlm.nih.gov/gene/100752912", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019775", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019775", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020472", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020472", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040066", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040066", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100752912", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752912", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FDU5", "url": "https://www.orthodb.org/?gene=A0A9J7FDU5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JCK7", "url": "https://www.orthodb.org/?gene=A0A9J7JCK7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR19869", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19869", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19869:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19869:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00400", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00400", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003503508", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503508", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FDU5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDU5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FDU5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDU5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JCK7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCK7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JCK7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCK7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNYRSSNTTTLQEDLLLRGEHTSQRLQGMLLLNCQLKPALPQKVCCMLWAVMGKLQSKLRHSTYKYSRPDGLTEERVQIKASQEYNPAHVDAVSVVATLNSDLCVSGGKDKTAVAYNWKTGHMVKRFRGHEREITKIACIPKSNQFFSASRDKTVMMWDLQGSSQPRQQLSGHAMVVTGLAVSPDSSQLCTGSRDNSLLLWDLGTGQCVERASISRNLVTHLCWVPREPYVLQSSEDKTIRLWDSRGLQMAHMFPTKQQIQTHCDVSVDGHTCISCSSGFGGEGCEATLWDLRQTRDRMCEYKGHFQTVASCVFLPKSMALMPMIATSAHDSTVKIWNQDTGACLFTLSLDGSGPLTSLAVGDITSLLCASFYKGVHLLRVDHSRGLELQEVAAF", "length": 395, "header": "tr|A0A9J7JCK7-1|A0A9J7JCK7_CRIGR Isoform 1 of WD repeat-containing protein 31 isoform X1 OS=Cricetulus griseus OX=10029 GN=Wdr31 PE=4 SV=1 CANONICAL=A0A9J7JCK7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FDU5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCK7/entry#A0A9J7FDU5-1", "sequence": { "sequence": "MNYRSSNTTTLQEDLLLRGEHTSQRLQGMLLLNCQLKPALPQKVCCMLWAVMGKLQSKLRHSTYKYRPDGLTEERVQIKASQEYNPAHVDAVSVVATLNSDLCVSGGKDKTAVAYNWKTGHMVKRFRGHEREITKIACIPKSNQFFSASRDKTVMMWDLQGSSQPRQQLSGHAMVVTGLAVSPDSSQLCTGSRDNSLLLWDLGTGQCVERASISRNLVTHLCWVPREPYVLQSSEDKTIRLWDSRGLQMAHMFPTKQQIQTHCDVSVDGHTCISCSSGFGGEGCEATLWDLRQTRDRMCEYKGHFQTVASCVFLPKSMALMPMIATSAHDSTVKIWNQDTGACLFTLSLDGSGPLTSLAVGDITSLLCASFYKGVHLLRVDHSRGLELQEVAAF", "length": 394, "header": "tr|A0A9J7FDU5-1|A0A9J7JCK7_CRIGR Computationally mapped isoform of WD repeat-containing protein 31 isoform X1 OS=Cricetulus griseus OX=10029 GN=Wdr31 PE=4 SV=1 CANONICAL=A0A9J7JCK7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JCK7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCK7/entry#A0A9J7JCK7-1", "sequence": { "sequence": "MNYRSSNTTTLQEDLLLRGEHTSQRLQGMLLLNCQLKPALPQKVCCMLWAVMGKLQSKLRHSTYKYSRPDGLTEERVQIKASQEYNPAHVDAVSVVATLNSDLCVSGGKDKTAVAYNWKTGHMVKRFRGHEREITKIACIPKSNQFFSASRDKTVMMWDLQGSSQPRQQLSGHAMVVTGLAVSPDSSQLCTGSRDNSLLLWDLGTGQCVERASISRNLVTHLCWVPREPYVLQSSEDKTIRLWDSRGLQMAHMFPTKQQIQTHCDVSVDGHTCISCSSGFGGEGCEATLWDLRQTRDRMCEYKGHFQTVASCVFLPKSMALMPMIATSAHDSTVKIWNQDTGACLFTLSLDGSGPLTSLAVGDITSLLCASFYKGVHLLRVDHSRGLELQEVAAF", "length": 395, "header": "tr|A0A9J7JCK7-1|A0A9J7JCK7_CRIGR Isoform 1 of WD repeat-containing protein 31 isoform X1 OS=Cricetulus griseus OX=10029 GN=Wdr31 PE=4 SV=1 CANONICAL=A0A9J7JCK7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FDU5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDU5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FDU5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FDU5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100752912", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752912", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 7, "end_pos": 9, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 7, "end_pos": 9 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7JE19-1", "uniprot_ac": "A0A9J7JE19", "uniprot_id": "A0A9J7JE19_CRIGR", "mass": { "chemical_mass": 82553.0, "monoisotopic_mass": 82553.0 }, "refseq": { "ac": "XP_007639798", "name": "neurochondrin isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007639798" }, "gene_names": [ { "name": "Ncdn", "type": "recommended", "evidence": [ { "id": "A0A9J7JE19", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JE19" } ] }, { "name": "Ncdn", "type": "synonym", "evidence": [ { "id": "XP_007639798", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007639798" } ] } ], "protein_names": [ { "name": "Neurochondrin", "type": "recommended", "evidence": [ { "id": "A0A9J7JE19", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JE19/entry#names_and_taxonomy" } ] }, { "name": "neurochondrin isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007639798", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007639798" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613817.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007639798", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007639798" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JE19", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JE19" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ncdn", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JE19", "locus": {} } ], "crossref": [ { "id": "100766879", "url": "https://www.ncbi.nlm.nih.gov/gene/100766879", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008709", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008709", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100766879", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766879", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "IVHYKKP", "url": "https://omabrowser.org/oma/group/IVHYKKP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MAM5", "url": "https://www.orthodb.org/?gene=A0A8C2MAM5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JE19", "url": "https://www.orthodb.org/?gene=A0A9J7JE19", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13109", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13109", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13109:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13109:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05536", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05536", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007639798", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007639798", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MAM5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MAM5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MAM5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MAM5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FED8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FED8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FED8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FED8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JE19", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JE19", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JE19-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JE19-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSSSLPVCPHHSLPMCLLERDKTRCLSPAAAEQWGQLLPTSLLLGKAGIMASDCEPALNQAESRNPTLERYLGALREAKNDSEQFAALLLVTKAVKAGDIDAKTRRRIFDAVGFTFPNRLLTTKEAPDGCPDHVLRALGVALLACFCSDPELASHPQVLNKIPILSTFLTARGDPDDAARRSMIDDTYQCLTAVAGTPRGPRHLIAGGTVSALCQAYLGHGYGFDQALALLVGLLAAAETQCWKEAEPDLLAVLRGLSEDFQRAEDASKFELCQLLPLFLPPTTVPPECHRDLQAGLARILGSKLSSWQRNPALKLAARLAHACGSDWIPVGSSGSKFLALLVNLACVEVRLALEETGTEVKEDVVTACYALMELGIQECTRCEQSLLKEPQKVQLVSIMKEAIGAVIHYLLQVGPEKQKEPFVFASVRILGAWLAEETSSLHKEVCQLLPFLVRYAKTLYEEAEEANDISQQVANLAISPTTPGPSWPGDALRLLLPGWCHLTVEDGPREILIKEGAPSLLCKYFLQQWELTSPGHDTSVLPDSVEIGLQTCCHIFLNLVVTAPGLIKRDACFTSLMNTLMTSLPSLVQQQGRLLLAANVATLGLLMARLLSTSPALQGTPASRGFFAAAILFLSQSHVARATPGSDQAVLALSPDYEGIWADLQELWFLGMQAFTGCVPLLPWLAPAALRSRWPQELLQLLGSVSPNSVKPEMVAAYQGVLVELARANRLCREAMRLQAGEETASHYRMAALEQCLSEP", "length": 761, "header": "tr|A0A9J7JE19-1|A0A9J7JE19_CRIGR Isoform 1 of Neurochondrin OS=Cricetulus griseus OX=10029 GN=Ncdn PE=3 SV=1 CANONICAL=A0A9J7JE19-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MAM5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JE19/entry#A0A8C2MAM5-1", "sequence": { "sequence": "MSCCDLAAAGQLGKAGIMASDCEPALNQAESRNPTLERYLGALREAKNDSEQFAALLLVTKAVKAGDIDAKTRRRIFDAVGFTFPNRLLTTKEAPDGCPDHVLRALGVALLACFCSDPELASHPQVLNKIPILSTFLTARGDPDDAARRSMIDDTYQCLTAVAGTPRGPRHLIAGGTVSALCQAYLGHGYGFDQALALLVGLLAAAETQCWKEAEPDLLAVLRGLSEDFQRAEDASKFELCQLLPLFLPPTTVPPECHRDLQAGLARILGSKLSSWQRNPALKLAARLAHACGSDWIPVGSSGSKFLALLVNLACVEVRLALEETGTEVKEDVVTACYALMELGIQECTRCEQSLLKEPQKVQLVSIMKEAIGAVIHYLLQVGPEKQKEPFVFASVRILGAWLAEETSSLHKEVCQLLPFLVRYAKTLYEEAEEANDISQQVANLAISPTTPGPSWPGDALRLLLPGWCHLTVEDGPREILIKEGAPSLLCKYFLQQWELTSPGHDTSVLPDSVEIGLQTCCHIFLNLVVTAPGLIKRDACFTSLMNTLMTSLPSLVQQQGRLLLAANVATLGLLMARLLSTSPALQGTPASRGFFAAAILFLSQSHVARATPGSDQAVLALSPDYEGIWADLQELWFLGMQAFTGCVPLLPWLAPAALRSRWPQELLQLLGSVSPNSVKPEMVAAYQGVLVELARANRLCREAMRLQAGEETASHYRMAALEQCLSEP", "length": 729, "header": "tr|A0A8C2MAM5-1|A0A9J7JE19_CRIGR Computationally mapped isoform of Neurochondrin OS=Cricetulus griseus OX=10029 GN=Ncdn PE=3 SV=1 CANONICAL=A0A9J7JE19-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FED8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JE19/entry#A0A9J7FED8-1", "sequence": { "sequence": "MSSSLPVCPHHSLPMCLLERDKTRCLSPAAAEQWGQLLPTSLLLGKAGIMASDCEPALNQAESRNPTLERYLGALREAKNDSEQFAALLLVTKAVKAGDIDAKTRRRIFDAVGFTFPNRLLTTKEAPDGCPDHVLRALGVALLACFCSDPELASHPQVLNKIPILSTFLTARGDPDDAARRSMIDDTYQCLTAVAGTPRGPRHLIAGGTVSALCQAYLGHGYGFDQALALLVGLLAAAETQCWKEAEPDLLAVLRGLSEDFQRAEDASKFELCQLLPLFLPPTTVPPECHRDLQAGLARILGSKLSSWQRNPALKLAARLAHACGSDWIPVGSSGSKFLALLVNLACVEVRLALEETGTEVKEDVVTACYALMELGIQECTRCEQSLLKEPQKVQLVSIMKEAIGAVIHYLLQVGPEKQKEPFVFASVRILGAWLAEETSSLHKEVCQLLPFLVRYAKTLYEEAEEANDISQQVANLAISPTTPGPSWPGDALRLLLPGWCHLTVEDGPREILIKEGAPSLLCKYFLQQWELTSPGHDTSVLPDSVEIGLQTCCHIFLNLVVTAPGLIKRDACFTSLMNTLMTSLPSLVQQQGRLLLAANVATLGLLMARLLSTSPEVLMMECT", "length": 624, "header": "tr|A0A9J7FED8-1|A0A9J7JE19_CRIGR Computationally mapped isoform of Neurochondrin OS=Cricetulus griseus OX=10029 GN=Ncdn PE=3 SV=1 CANONICAL=A0A9J7JE19-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JE19-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JE19/entry#A0A9J7JE19-1", "sequence": { "sequence": "MSSSLPVCPHHSLPMCLLERDKTRCLSPAAAEQWGQLLPTSLLLGKAGIMASDCEPALNQAESRNPTLERYLGALREAKNDSEQFAALLLVTKAVKAGDIDAKTRRRIFDAVGFTFPNRLLTTKEAPDGCPDHVLRALGVALLACFCSDPELASHPQVLNKIPILSTFLTARGDPDDAARRSMIDDTYQCLTAVAGTPRGPRHLIAGGTVSALCQAYLGHGYGFDQALALLVGLLAAAETQCWKEAEPDLLAVLRGLSEDFQRAEDASKFELCQLLPLFLPPTTVPPECHRDLQAGLARILGSKLSSWQRNPALKLAARLAHACGSDWIPVGSSGSKFLALLVNLACVEVRLALEETGTEVKEDVVTACYALMELGIQECTRCEQSLLKEPQKVQLVSIMKEAIGAVIHYLLQVGPEKQKEPFVFASVRILGAWLAEETSSLHKEVCQLLPFLVRYAKTLYEEAEEANDISQQVANLAISPTTPGPSWPGDALRLLLPGWCHLTVEDGPREILIKEGAPSLLCKYFLQQWELTSPGHDTSVLPDSVEIGLQTCCHIFLNLVVTAPGLIKRDACFTSLMNTLMTSLPSLVQQQGRLLLAANVATLGLLMARLLSTSPALQGTPASRGFFAAAILFLSQSHVARATPGSDQAVLALSPDYEGIWADLQELWFLGMQAFTGCVPLLPWLAPAALRSRWPQELLQLLGSVSPNSVKPEMVAAYQGVLVELARANRLCREAMRLQAGEETASHYRMAALEQCLSEP", "length": 761, "header": "tr|A0A9J7JE19-1|A0A9J7JE19_CRIGR Isoform 1 of Neurochondrin OS=Cricetulus griseus OX=10029 GN=Ncdn PE=3 SV=1 CANONICAL=A0A9J7JE19-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 482, "start_aa": "Thr", "end_pos": 482, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr482", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 644, "start_aa": "Thr", "end_pos": 644, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr644", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FED8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FED8" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FED8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FED8" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100766879", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766879", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8V0YTD0-1", "protein_name": "Neurochondrin", "gene_name": "NCDN", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MASGPGAATLKKCLEVLRDARNDSEQLAALLLVTKAVRAGDLDSKTRRQIFDAIGFTFPNRLLSSRQAPPGCPEHTFRALGLTLLACFCTEPELAGHSQVLNKIPTFADVLLSPCQPDCTSMVDDAYQCLAAVLATPRGPREMVTKGAASALCQAYVNGGYGSERALALLLGLLAVSEAKCWQRDAPHLLAVLSKLSEEFVRAEDGSKFELCELLPRFIPLSPPLAEVSQGSECVRQLYKGLASILGSKLSQSQRDPALKLAASLTQACGSEWIPAGSTGSKFLALLVNLACVEVRLTLEEPEPLEVEGKKEVVTACYVLIEMGIQECLKEEESLLDEAQRMQLMRIMEEAFGAVVFYLRQVKEEELQDPFVFASVRILGAWMAEETSSLKQEICELLPFLVRYARKLFKEGGPAENLPQTAGLVSSDSSILGQDALRFLLPGFCHLTAEDRPRDILISEGAPALLCDYFLHQWGVLTSQPGSLTSTEMSLQTLCGIFLNLVVTAPNLIRQEKTFSSLMDTLLKSLPFLLPQKDHLVLAANIATLGLMMARILSSSAVLQKTGSAKEFFRATICFLSQAHTAQADPGSHGLALAVSPAYVSAWDDIRELWFLGMQALASCVPLFPWLPQAVLQAQWLEELSELLTRVTAASVDFELIAAFQAVLVELARASKPCREVILSHHGEEWANLYGMAALEQCLSKQ", "length": 702 }, "evidence": [ { "id": "A0A9J7JE19", "url": "https://omabrowser.org/oma/group/A0A9J7JE19/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "O35095-1", "protein_name": "Neurochondrin", "gene_name": "Ncdn", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSCCDLAAAGQLGKAGIMASDCEPALNQAESRNPTLERYLGALREAKNDSEQFAALLLVTKAVKAGDIDAKTRRRIFDAVGFTFPNRLLTTKEAPDGCPDHVLRALGVALLACFCSDPELASHPQVLNKIPILCTFLTARGDPDDAARRSMIDDTYQCLTAVAGTPRGPRHLIAGGTVSALCQAYLGHGYGFDQALALLVGLLAAAETQCWKEAEPDLLAVLRGLSEDFQRAEDASKFELCQLLPLFLPPTTVPPECHRDLQAGLARILGSKLSSWQRNPALKLAARLAHACGSDWIPVGSSGSKFLALLVNLACVEVRLALEETGTEVKEDVVTACYALMELGIQECTRCEQSLLKEPQKVQLVSIMKEAIGAVIHYLLRVGPEKQKEPFVFASVRILGAWLAEETSSLRKEVCQLLPFLVRYAKTLYEEAEEASDISQQVANLAISPTTPGPAWPGDALRLLLPGWCHLTVEDGPREILIKEGAPSLLCKYFLQQWELTSPGHDTSVLPDSVEIGLQTCCHIFLNLVVTAPGLIKRDACFTSLMNTLMTSLPSLVQQQGRLLLAANVATLGLLMARLLSTSPALQGTPASRGFFAAAILFLSQSHVARATPGSDQAVLALSPDYEGIWADLQELWFLGMQAFTGCVPLLPWLAPAALRSRWPQELLQLLGSVSPNSVKPEMVAAYQGVLVELARANRLCREAMRLQAGEETASHYRMAALEQCLSEP", "length": 729 }, "evidence": [ { "id": "A0A9J7JE19", "url": "https://omabrowser.org/oma/group/A0A9J7JE19/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q2KJ97-1", "protein_name": "Neurochondrin", "gene_name": "NCDN", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSCCDLAAAGQLGKAGIMASDCEPALNQAESRNPTLERYLGALREAKNDSEQFAALLLVTKAVKAGDIDAKTRRRIFDAVGFTFPNRLLTTKEAPDGCPDHVLRALGVALLACFCSDPELAAHPQVLNKIPILSTFLTARGDPDDAARRSMVDDTYQCLTAVAGTPRGPRHLIAGGTVSALCQAYLGHGYGFDQALALLVGLLAAAETQCWKEAEPDLLAVLRGLSEDFQKAEDASKFELCQLLPLFLPPTTVPSECLRDLQAGLARILGSKLSSWQRNPALKLAARLAHACGSDWIPAGNSGSKFLALLVNLACVEVRLALEETGTEVKEDVVTACYALMELGIQECTRCEQSLLKEPQKVQLVSIMKEAIGAVIHYLQQVGPEKQKEPFVFASVRILGAWLAEETSSLRKEVCQLLPFLVRYAKTLYEEAEEANDLSQQVATLAISPTTPGPTWPGDALRLLLPGWCHLTVEDGPREILIKEGAPSLLCKYFLQQWELTSPGHDTSVLPDSVEIGLQTCCHIFLNLVVTAPGLIKRDACFTSLMNTLMASLPSLVQQQGRLLLAANVATLGLLMARLLSTSPALQGTPASRGFFAAAILFLSQSHVARATPGSEQAVLALSPDYEGVWADLQELWFLGMQAFTGCVPLLPWLAPAALRSRWPQELLQLLGSVSPNSVKPEMVAAYQGVLVELARANRLCREAMRLQAGEETASHYRMAALEQCLAEP", "length": 729 }, "evidence": [ { "id": "A0A9J7JE19", "url": "https://omabrowser.org/oma/group/A0A9J7JE19/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q9UBB6-1", "protein_name": "Neurochondrin", "gene_name": "NCDN", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSCCDLAAAGQLGKASIMASDCEPALNQAEGRNPTLERYLGALREAKNDSEQFAALLLVTKAVKAGDIDAKTRRRIFDAVGFTFPNRLLTTKEAPDGCPDHVLRALGVALLACFCSDPELAAHPQVLNKIPILSTFLTARGDPDDAARRSMIDDTYQCLTAVAGTPRGPRHLIAGGTVSALCQAYLGHGYGFDQALALLVGLLAAAETQCWKEAEPDLLAVLRGLSEDFQKAEDASKFELCQLLPLFLPPTTVPPECYRDLQAGLARILGSKLSSWQRNPALKLAARLAHACGSDWIPAGSSGSKFLALLVNLACVEVRLALEETGTEVKEDVVTACYALMELGIQECTRCEQSLLKEPQKVQLVSVMKEAIGAVIHYLLQVGSEKQKEPFVFASVRILGAWLAEETSSLRKEVCQLLPFLVRYAKTLYEEAEEANDLSQQVANLAISPTTPGPTWPGDALRLLLPGWCHLTVEDGPREILIKEGAPSLLCKYFLQQWELTSPGHDTSVLPDSVEIGLQTCCHIFLNLVVTAPGLIKRDACFTSLMNTLMTSLPALVQQQGRLLLAANVATLGLLMARLLSTSPALQGTPASRGFFAAAILFLSQSHVARATPGSDQAVLALSPEYEGIWADLQELWFLGMQAFTGCVPLLPWLAPAALRSRWPQELLQLLGSVSPNSVKPEMVAAYQGVLVELARANRLCREAMRLQAGEETASHYRMAALEQCLSEP", "length": 729 }, "evidence": [ { "id": "A0A9J7JE19", "url": "https://omabrowser.org/oma/group/A0A9J7JE19/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9VI25-1", "protein_name": "Neurochondrin homolog", "gene_name": "Neurochondrin", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MTDVPEPVRKCASLLKGTKSDTEKFAALFMVTKLVKGKDCNAAGKKLLFEAIGFPFLKKLLVSKDLPNDCPPLVYKSVALSILTCFCQEEELATHKDIIDAIPTLLEIVEQADDEDYEDNLIVVSEAYSCLKSIASHEPGQQALLATGAIPKMSQIYSAQSFQTDEALHLIVLLVKQFGVVSWPEDPTAFHALIQRIALDMETDDTERKYELCRILADILITCRREIVINSLEGQIWPESLFKGCGDILKAKIGPKQRDPALHLIATTLHVLGIQWAFMDEQKTFFLQLLQLGAIEVRMQMDEKKLETTFKQAELLTCCFSILEHCIEYMATDQLDLEPKEKQTTYTALKGAFNQVLAVLTRVSQDKIRESSNPKDKKFVFAIVKVLSAWLAQETTAMRPAIYKLLPFMLKVANESFQELKTWRAGTREGEPPIDVLRIMLPALCHFAVEEEARRVLFTHKQDEVLLESLEFYFSIAHWKRPPIPRAERLKRMNEPDPVPTPEQQAEMKVARSAIVALCNILMNFTVLEPKKAEDGPTFANLLKFVVENLPELKDTPDNLVIHGNLAVLGLLLLKQQSKKVKQNDFSICRYIQATIRFLWDAYNIDESNDPTALVVSIAYKGYWSDLSELWFLGMQTMCGVLPLVPWLSEFALESGWAEGIVKTLKKVKIGTLPANVKSAYEDFLSQLVDVNGDVQAVLKKADALRVCRNHRMMDLGKKLFGD", "length": 723 }, "evidence": [ { "id": "A0A9J7JE19", "url": "https://omabrowser.org/oma/group/A0A9J7JE19/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9Z0E0-1", "protein_name": "Neurochondrin", "gene_name": "Ncdn", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSCCDLAAAGQLGKAGIMASDCEPALNQAESRNPTLERYLGALREAKNDSEQFAALLLVTKAVKAGDIDAKTRRRIFDAVGFTFPNRLLTTKEAPDGCPDHVLRALGVALLACFCSDPELASHPQVLNKIPILSTFLTARGDPDDAARRSMIDDTYQCLTAVAGTPRGPRHLIAGGTVSALCQAYLGHGYGFDQALALLVGLLAAAETQCWKEAEPDLLAVLRGLSEDFQRAEDASKFELCQLLPLFLPPTTVPPECHRDLQAGLARILGSKLSSWQRNPALKLAARLAHACGSDWIPVGSSGSKFLALLVNLACVEVRLALEETGTEVKEDVVTACYALMELGIQECTRCEQSLLKEPQKVQLVSIMKEAIGAVIHYLLQVGPEKQKEPFVFASVRILGAWLAEETSSLRKEVCQLLPFLVRYAKTLYEEAEEASDISQQVANLAISPTTPGPSWPGDALRLLLPGWCHLTVEDGPREILIKEGAPSLLCKYFLQQWELTSPGHDTSVLPDSVEIGLQTCCHIFLNLVVTAPGLIKRDACFTSLMNTLMTSLPSLVQQQGRLLLAANVATLGLLMARLLSTSPALQGTPASRGFFAAAILFLSQSHVARATPGSDQAVLALSPDYEGIWADLQELWFLGMQAFTGCVPLLPWLAPAALRSRWPQELLQLLGSVSPNSVKPEMVAAYQGVLVELARANRLCREAMRLQAGEETASHYRMAALEQCLSEP", "length": 729 }, "evidence": [ { "id": "A0A9J7JE19", "url": "https://omabrowser.org/oma/group/A0A9J7JE19/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 5, "go_terms": [ { "name": "dendrite", "id": "GO:0030425", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030425", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JE19", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JE19" } ], "pmid": "" }, { "name": "glutamatergic synapse", "id": "GO:0098978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098978", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JE19", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JE19" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JE19", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JE19" } ], "pmid": "" }, { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JE19", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JE19" } ], "pmid": "" }, { "name": "postsynapse", "id": "GO:0098794", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0098794", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JE19", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JE19" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "neuron projection development", "id": "GO:0031175", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031175", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JE19", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JE19" } ], "pmid": "" }, { "name": "regulation of neuronal synaptic plasticity", "id": "GO:0048168", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048168", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JE19", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JE19" } ], "pmid": "" }, { "name": "regulation of postsynaptic neurotransmitter receptor internalization", "id": "GO:0099149", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0099149", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JE19", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JE19" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 80, "end_pos": 82, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 482, 644 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 80, "end_pos": 82 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7JDI4-1", "uniprot_ac": "A0A9J7JDI4", "uniprot_id": "A0A9J7JDI4_CRIGR", "mass": { "chemical_mass": 149361.0, "monoisotopic_mass": 149361.0 }, "refseq": { "ac": "XP_027257614", "name": "uncharacterized protein KIAA0825 homolog isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257614" }, "gene_names": [ { "name": "Kiaa0825", "type": "recommended", "evidence": [ { "id": "A0A9J7JDI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDI4" } ] }, { "name": "Kiaa0825", "type": "synonym", "evidence": [ { "id": "XP_027257614", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257614" } ] } ], "protein_names": [ { "name": "Uncharacterized protein KIAA0825 homolog isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7JDI4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDI4/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein KIAA0825 homolog isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027257614", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257614" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027257614", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257614" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JDI4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDI4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Kiaa0825", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDI4", "locus": {} } ], "crossref": [ { "id": "100754810", "url": "https://www.ncbi.nlm.nih.gov/gene/100754810", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR027993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100754810", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754810", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JDI4", "url": "https://www.orthodb.org/?gene=A0A9J7JDI4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR33960", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33960", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR33960:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33960:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14906", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14906", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027257614", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257614", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FFH7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFH7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FFH7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFH7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GPQ9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GPQ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GPQ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GPQ9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J9Z6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9Z6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J9Z6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9Z6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JDI4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDI4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JDI4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDI4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JFU3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFU3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JFU3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFU3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNNKRHLEDSNSICALCQKGKRERNPSNYFIQRMDRLNEYSHNSFDLQSLLNSFPGDLEFKQIFSDIGEQMQQNATSIEHCIEEIQSEVNKLCPDVQLQTTSDCFKWLTSYNHNSSKSPSIPHGDLIKFLKIMKDLLNNEENQEEMILDLLWDLSCQSSISFLSPLGGTSFCFLSRTSLHSVEDYSSVDVKSVWDDVRLHLRRFLVNRLESHNEINNSQQRVELKNQCMKQLLLLYPESEVLIKYQNIQKRLLAKFLQNSFPSCNRDSDLEVIAHGYQSTMPMLYSMIKEDFNILCEILAPSSIVQFIKETYLDTVTEEMAKILENFCELQLKENAVSGVKTSKSCSKHSGTVHALVSSACPQKPRRSSLSLDELKFLSQLTQSFLKLESNIQELLEETFLLLQMPRNSPGILEKSNREAMVEKRTANETNISPEPLLPVKEATLLEFGWRNAFKDITLSMAHCISAAIEGFSTKVLQQEQTERTSASSYIMNLVNVPKACLEGHIFAEEEQPKQVAKFCSDIMEKLDTMLPLALACRDDSLQEIRGNLVEACCKVATAVLERLQERGRDIPSGAPLKNLHILLSTAAYVSQHFMHYDNLMRETTKKPVFLVPVQRYQEFINTLQFQVTDYCVRVCATSILQDAESHHWDDYKAFYEGERCSFSIQMWHYFSWALRHDLWTILPAKLAQMILAEFLEKSLGLLASRYARACPSPKRTAQIRLDVTTILICTENILWSVCTSVQEVLNPHEFNNNNIFKIHTHCNNLFTTLAILTSPLSELYQTFQHGMDESASASNSLMSLVNQPLHWVSCLSQFYPSLLRPMSAGELNAEGQLKLLLSQPCCKWDLLLETLLHGGGLIPRILLKSSQQATGTEKDQKEGCSVVEAIFKVLYHCHLSPQAFGSVFMSYMEEEQLLDFLYNIPVSVYTESQPEVIRCLRLALMDAVKDTVQQVISLVRCGRNSETNLNKPRVPDHLLQTIPPAWGYIPRGSRRKESNKGFPRLAAQAVSIVISKLPTVIACLPPTIKIFFYLSERKMSKNLAALKKAGLLVWNLIVIICRIFEDGNTVERLTGASLDRWSKEKVALISVCLESILGERSSPCQLTQKVILSIERQKPNWLEHQLLKARTLSINCAFMAVEGSPGLEGDTALELTEQKTNVMVLDLCHKPGGSEYLRQIYHIMRLNEEYLKKQLFAMNGSEKKPLPSQPLKVTLWSVEDQPPVFNPFHVYKMFSENMIHQSATATWCWNWSNLLPNYLRLDKMTFGALLKNRWEMRKDETLEEKDKMMLEHLKQICSLQDSSPLDSTDKL", "length": 1308, "header": "tr|A0A9J7JDI4-1|A0A9J7JDI4_CRIGR Isoform 1 of Uncharacterized protein KIAA0825 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=Kiaa0825 PE=4 SV=1 CANONICAL=A0A9J7JDI4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FFH7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDI4/entry#A0A9J7FFH7-1", "sequence": { "sequence": "MDRLNEYSHNSFDLQSLLNSFPGDLEFKQIFSDIGEQMQQNATSIEHCIEEIQSEVNKLCPDVQLQTTSDCFKWLTSYNHNSSKSPSIPHGDLIKFLKIMKDLLNNEENQEEMILDLLWDLSCQSSISFLSPLGGTSFCFLSRTSLHSVEDYSSVDVKSVWDDVRLHLRRFLVNRLESHNEINNSQQRVELKNQCMKQLLLLYPESEVLIKYQNIQKRLLAKFLQNSFPSCNRDSDLEVIAHGYQSTMPMLYSMIKEDFNILCEILAPSSIVQFIKETYLDTVTEEMAKILENFCELQLKENAVSGVKTSKSCSKHSGTVHALVSSACPQKPRRSSLSLDELKFLSQLTQSFLKLESNIQELLEETFLLLQMPRNSPGILEKSNREAMVEKRTANETNISPEPLLPVKEATLLEFGWRNAFKDITLSMAHCISAAIEGFSTKVLQQEQTERTSASSYIMNLVNVPKACLEGHIFAEEEQPKQVAKFCSDIMEKLDTMLPLALACRDDSLQEIRGNLVEACCKVATAVLERLQERGRDIPSGAPLKNLHILLSTAAYVSQHFMHYDNLMRETTKKPVFLVPVQRYQEFINTLQFQVTDYCVRVCATSILQDAESHHWDDYKAFYEGERCSFSIQMWHYFSWALRHDLWTILPAKLAQMILAEFLEKSLGLLASRYARACPSPKRTAQIRLDVTTILICTENILWSVCTSVQEVLNPHEFNNNNIFKIHTHCNNLFTTLAILTSPLSELYQTFQHGMDESASASNSLMSLVNQPLHWVSCLSQFYPSLLRPMSAGELNAEGQLKLLLSQPCCKWDLLLETLLHGGGLIPRILLKSSQQATGTEKDQKEGCSVVEAIFKVLYHCHLSPQAFGSVFMSYMEEEQLLDFLYNIPVSVYTESQPEVIRCLRLALMDAVKDTVQQVISLVRCGRNSETNLNKPRVPDHLLQTIPPAWGYIPRGSRRKESNKGFPRLAAQAVSIVISKLPTVIACLPPTIKIFFYLSERKMSKNLAALKKAGLLVWNLIVIICRIFEDGNTVERLTGASLDRWSKEKVALISVCLESILGERSSPCQLTQKVILSIERQKPNWLEHQLLKARTLSINCAFMAVEGSPGLEGDTALELTEQKTNVMVLDLCHKPGGSEYLRQIYHIMRLNEEYLKKQLFAMNGSEKKPLPSQPLKVTLWSVEDQPPVFNPFHVYKMFSENMIHQSATATWCWNWSNLLPNYLRLDKMTFGALLKNRWEMRKDETLEEKDKMMLEHLKQICSLQDSSPLDSTDKL", "length": 1275, "header": "tr|A0A9J7FFH7-1|A0A9J7JDI4_CRIGR Computationally mapped isoform of Uncharacterized protein KIAA0825 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=Kiaa0825 PE=4 SV=1 CANONICAL=A0A9J7JDI4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GPQ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDI4/entry#A0A9J7GPQ9-1", "sequence": { "sequence": "MNNKRHLEDSNSICALCQKGKRERNPSNYFIQRMDRLNEYSHNSFDLQSLLNSFPGDLEFKQIFSDIGEQMQQNATSIEHCIEEIQSEVNKLCPDVQLQTTSDCFKWLTSYNHNSSKSPSIPHGDLIKFLKIMKDLLNNEENQEEMILDLLWDLSCQSSISFLSPLGGTSFCFLSRTSLHSVEDYSSVDVKSVWDDVRLHLRRFLVNRLESHNEINNSQQRVELKNQCMKQLLLLYPESEVLIKYQNIQKRLLAKFLQNSFPSCNRDSDLEVIAHGYQSTMPMLYSMIKEDFNILCEILAPSSIVQFIKETYLDTVTEEMAKILENFCELQLKENAVSGVKTSKSCSKHSGTVHALVSSACPQKPRRSSLSLDELKFLSQLTQSFLKLESNIQELLEETFLLLQMPRNSPGILEKSNREAMVEKRTANETNISPEPLLPVKEATLLEFGWRNAFKDITLSMAHCISAAIEGFSTKVLQQEQTERTSASSYIMNLVNVPKACLEGHIFAEEEQPKQVAKFCSDIMEKLDTMLPLALACRDDSLQEIRGNLVEACCKVATAVLERLQERGRDIPSGAPLKNLHILLSTAAYVSQHFMHYDNLMRETTKKPVFLVPVQRYQEFINTLQFQVTDYCVRVCATSILQDAESHHWDDYKAFYEGERCSFSIQMWHYFSWALRHDLWTILPAKLAQMILAEFLEKSLGLLASRYARACPSPKRTAQIRLDVTTILICTENILWSVCTSVQEVLNPHEFNNNNIFKIHTHCNNLFTTLAILTSPLSELYQTFQHGMDESASASNSLMSLVNQPLHWVSCLSQFYPSLLRPMSAGELNAEGQLKLLLSQPCCKWDLLLETLLHGGGLIPRILLKSSQQATGTEKDQKEGCSVVEAIFKVLYHCHLSPQAFGSVFMSYMEEEQLLDFLYNIPVSVYTESQPEVIRCLRLALMDAVKDTVQQVISLVRCGRNSETNLNKPRVPDHLLQTIPPAWGYIPRGSRRKESNKGMCV", "length": 1001, "header": "tr|A0A9J7GPQ9-1|A0A9J7JDI4_CRIGR Computationally mapped isoform of Uncharacterized protein KIAA0825 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=Kiaa0825 PE=4 SV=1 CANONICAL=A0A9J7JDI4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J9Z6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDI4/entry#A0A9J7J9Z6-1", "sequence": { "sequence": "MSPSLRSKTSLQEKTTESIEHCIEEIQSEVNKLCPDVQLQTTSDCFKWLTSYNHNSSKSPSIPHGDLIKFLKIMKDLLNNEENQEEMILDLLWDLSCQSSISFLSPLGGTSFCFLSRTSLHSVEDYSSVDVKSVWDDVRLHLRRFLVNRLESHNEINNSQQRVELKNQCMKQLLLLYPESEVLIKYQNIQKRLLAKFLQNSFPSCNRDSDLEVIAHGYQSTMPMLYSMIKEDFNILCEILAPSSIVQFIKETYLDTVTEEMAKILENFCELQLKENAVSGVKTSKSCSKHSGTVHALVSSACPQKPRRSSLSLDELKFLSQLTQSFLKLESNIQELLEETFLLLQMPRNSPGILEKSNREAMVEKRTANETNISPEPLLPVKEATLLEFGWRNAFKDITLSMAHCISAAIEGFSTKVLQQEQTERTSASSYIMNLVNVPKACLEGHIFAEEEQPKQVAKFCSDIMEKLDTMLPLALACRDDSLQEIRGNLVEACCKVATAVLERLQERGRDIPSGAPLKNLHILLSTAAYVSQHFMHYDNLMRETTKKPVFLVPVQRYQEFINTLQFQVTDYCVRVCATSILQDAESHHWDDYKAFYEGERCSFSIQMWHYFSWALRHDLWTILPAKLAQMILAEFLEKSLGLLASRYARACPSPKRTAQIRLDVTTILICTENILWSVCTSVQEVLNPHEFNNNNIFKIHTHCNNLFTTLAILTSPLSELYQTFQHGMDESASASNSLMSLVNQPLHWVSCLSQFYPSLLRPMSAGELNAEGQLKLLLSQPCCKWDLLLETLLHGGGLIPRILLKSSQQATGTEKDQKEGCSVVEAIFKVLYHCHLSPQAFGSVFMSYMEEEQLLDFLYNIPVSVYTESQPEVIRCLRLALMDAVKDTVQQVISLVRCGRNSETNLNKPRVPDHLLQTIPPAWGYIPRGSRRKESNKGFPRLAAQAVSIVISKLPTVIACLPPTIKIFFYLSERKMSKNLAALKKAGLLVWNLIVIICRIFEDGNTVERLTGASLDRWSKEKVALISVCLESILGERSSPCQLTQKVILSIERQKPNWLEHQLLKARTLSINCAFMAVEGSPGLEGDTALELTEQKTNVMVLDLCHKPGGSEYLRQIYHIMRLNEEYLKKQLFAMNGSEKKPLPSQPLKVTLWSVEDQPPVFNPFHVYKMFSENMIHQSATATWCWNWSNLLPNYLRLDKMTFGALLKNRWEMRKDETLEEKDKMMLEHLKQICSLQDSSPLDSTDKL", "length": 1249, "header": "tr|A0A9J7J9Z6-1|A0A9J7J9Z6_CRIGR Computationally mapped isoform of Uncharacterized protein KIAA0825 homolog isoform X3 OS=Cricetulus griseus OX=10029 GN=Kiaa0825 PE=4 SV=1 CANONICAL=A0A9J7JDI4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JDI4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDI4/entry#A0A9J7JDI4-1", "sequence": { "sequence": "MNNKRHLEDSNSICALCQKGKRERNPSNYFIQRMDRLNEYSHNSFDLQSLLNSFPGDLEFKQIFSDIGEQMQQNATSIEHCIEEIQSEVNKLCPDVQLQTTSDCFKWLTSYNHNSSKSPSIPHGDLIKFLKIMKDLLNNEENQEEMILDLLWDLSCQSSISFLSPLGGTSFCFLSRTSLHSVEDYSSVDVKSVWDDVRLHLRRFLVNRLESHNEINNSQQRVELKNQCMKQLLLLYPESEVLIKYQNIQKRLLAKFLQNSFPSCNRDSDLEVIAHGYQSTMPMLYSMIKEDFNILCEILAPSSIVQFIKETYLDTVTEEMAKILENFCELQLKENAVSGVKTSKSCSKHSGTVHALVSSACPQKPRRSSLSLDELKFLSQLTQSFLKLESNIQELLEETFLLLQMPRNSPGILEKSNREAMVEKRTANETNISPEPLLPVKEATLLEFGWRNAFKDITLSMAHCISAAIEGFSTKVLQQEQTERTSASSYIMNLVNVPKACLEGHIFAEEEQPKQVAKFCSDIMEKLDTMLPLALACRDDSLQEIRGNLVEACCKVATAVLERLQERGRDIPSGAPLKNLHILLSTAAYVSQHFMHYDNLMRETTKKPVFLVPVQRYQEFINTLQFQVTDYCVRVCATSILQDAESHHWDDYKAFYEGERCSFSIQMWHYFSWALRHDLWTILPAKLAQMILAEFLEKSLGLLASRYARACPSPKRTAQIRLDVTTILICTENILWSVCTSVQEVLNPHEFNNNNIFKIHTHCNNLFTTLAILTSPLSELYQTFQHGMDESASASNSLMSLVNQPLHWVSCLSQFYPSLLRPMSAGELNAEGQLKLLLSQPCCKWDLLLETLLHGGGLIPRILLKSSQQATGTEKDQKEGCSVVEAIFKVLYHCHLSPQAFGSVFMSYMEEEQLLDFLYNIPVSVYTESQPEVIRCLRLALMDAVKDTVQQVISLVRCGRNSETNLNKPRVPDHLLQTIPPAWGYIPRGSRRKESNKGFPRLAAQAVSIVISKLPTVIACLPPTIKIFFYLSERKMSKNLAALKKAGLLVWNLIVIICRIFEDGNTVERLTGASLDRWSKEKVALISVCLESILGERSSPCQLTQKVILSIERQKPNWLEHQLLKARTLSINCAFMAVEGSPGLEGDTALELTEQKTNVMVLDLCHKPGGSEYLRQIYHIMRLNEEYLKKQLFAMNGSEKKPLPSQPLKVTLWSVEDQPPVFNPFHVYKMFSENMIHQSATATWCWNWSNLLPNYLRLDKMTFGALLKNRWEMRKDETLEEKDKMMLEHLKQICSLQDSSPLDSTDKL", "length": 1308, "header": "tr|A0A9J7JDI4-1|A0A9J7JDI4_CRIGR Isoform 1 of Uncharacterized protein KIAA0825 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=Kiaa0825 PE=4 SV=1 CANONICAL=A0A9J7JDI4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JFU3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDI4/entry#A0A9J7JFU3-1", "sequence": { "sequence": "MNNKRHLEDSNSICALCQKGKRERNPSNYFIQRMDRLNEYSHNSFDLQSLLNSFPGDLEFKQIFSDIGEQMQQNATSIEHCIEEIQSEVNKLCPDVQLQTTSDCFKWLTSYNHNSSKSPSIPHGDLIKFLKIMKDLLNNEENQEEMILDLLWDLSCQSSISFLSPLGGTSFCFLSRTSLHSVEDYSSVDVKSVWDDVRLHLRRFLVNRLESHNEINNSQQRVELKNQCMKQLLLLYPESEVLIKYQNIQKRLLAKFLQNSFPSCNRDSDLEVIAHGYQSTMPMLYSMIKEDFNILCEILAPSSIVQFIKETYLDTVTEEMAKILENFCELQLKENAVSGVKTSKSCSKHSGTVHALVSSACPQKPRRSSLSLDELKFLSQLTQSFLKLESNIQELLEETFLLLQMPRNSPVSSTDSAFGGRLLVSQKRALKKRKTCTSHSVLPTRQVALKCTQWEPMKTNLVVKVDVTGKYCQPPLPVKESKAAACKVARSVK", "length": 493, "header": "tr|A0A9J7JFU3-1|A0A9J7JFU3_CRIGR Computationally mapped isoform of Uncharacterized protein KIAA0825 homolog isoform X5 OS=Cricetulus griseus OX=10029 GN=Kiaa0825 PE=4 SV=1 CANONICAL=A0A9J7JDI4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FFH7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFH7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FFH7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFH7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100754810", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754810", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 114, "end_pos": 116, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1196, "end_pos": 1198, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1247, "end_pos": 1249, "annotation": "n_glycosylation_sequon" }, { "start_pos": 216, "end_pos": 218, "annotation": "n_glycosylation_sequon" }, { "start_pos": 428, "end_pos": 430, "annotation": "n_glycosylation_sequon" }, { "start_pos": 431, "end_pos": 433, "annotation": "n_glycosylation_sequon" }, { "start_pos": 74, "end_pos": 76, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 114, "end_pos": 116 }, { "start_pos": 1196, "end_pos": 1198 }, { "start_pos": 1247, "end_pos": 1249 }, { "start_pos": 216, "end_pos": 218 }, { "start_pos": 428, "end_pos": 430 }, { "start_pos": 431, "end_pos": 433 }, { "start_pos": 74, "end_pos": 76 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7JBP3-1", "uniprot_ac": "A0A9J7JBP3", "uniprot_id": "A0A9J7JBP3_CRIGR", "mass": { "chemical_mass": 171923.0, "monoisotopic_mass": 171923.0 }, "refseq": { "ac": "XP_027260653", "name": "unhealthy ribosome biogenesis protein 2 homolog isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260653" }, "gene_names": [ { "name": "Urb2", "type": "recommended", "evidence": [ { "id": "A0A9J7JBP3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBP3" } ] }, { "name": "Urb2", "type": "synonym", "evidence": [ { "id": "XP_027260653", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260653" } ] } ], "protein_names": [ { "name": "Unhealthy ribosome biogenesis protein 2 homolog isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7JBP3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBP3/entry#names_and_taxonomy" } ] }, { "name": "unhealthy ribosome biogenesis protein 2 homolog isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027260653", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260653" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027260653", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260653" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JBP3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBP3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Urb2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBP3", "locus": {} } ], "crossref": [ { "id": "100768105", "url": "https://www.ncbi.nlm.nih.gov/gene/100768105", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR018849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018849", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052609", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052609", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100768105", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768105", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JBP3", "url": "https://www.orthodb.org/?gene=A0A9J7JBP3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15682", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15682", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15682:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15682:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10441", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10441", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027260653", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260653", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FID6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FID6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FID6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FID6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GWQ0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GWQ0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GWQ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GWQ0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JBP3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBP3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JBP3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBP3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JHK7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JHK7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JHK7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JHK7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JHZ7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JHZ7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JHZ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JHZ7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAVYSGISFKLKSKTTSWEDKLKLAHFAWISHQCFLPNKEQVLLDWARQTLVAFYKKKLELQEDVVERLWVYVDNILHSRKLQNLLKNGKTVNLQISLVKIINERIAEFSLSGSQRNVCAILSCCQGILSAPALAVIYTAKPELLVALLSQLCWSVCRHPEGNMTAQLFEVIHLALDHYLKLQQQQANPRRVFGDMTGHLLQPCLVLRHLLFGGTWTQAGQGQLRQVLSREIRSKIDTVLRGGIFRHDLLSSYKEELLEQHQGNVKTGVLKNLLTPMETVITRLVEPDYIKSDLHALVVANSVSLLYRLFLDSYLKEENQFLCFQALPRLFGCLQISHLQEGQMEALALSDWTTELLAVEQLLNSVATSNIYNVAADRIRHGEIQFHFYRRVAELLINHLQAPVPAWFRCLKILMSLNHLILEPDLDDLLSSAWIDAEITEFRAKKAQEVLINTVFQTYAKLRQMPRLFEEVLGVICRPAAEALRQPLLASGPSVTLCACLLELPLSQILDTWSLVLDKFQSLVMPCLQSDTDMSLKALSLSSLLHCIMFNMPSLDNSMPLPVIRRTQCIMERMLKELVKPLLGLFLNLWSPEPELWQQKVSDSALLLSYTWAQVDTTLSLHCSQYYSLAGHLTGAALDISNLPLLLPGVETQLWKKVEKCIAQSRSLSRYCLEQLYLQKVKRILIQTNSQSKEALQTLRCDTAHILDSSRDCLNQKTVVAWDRQVSTMNESTYPVAHWHLIVSNLTVLIPYLCPDDVRYVASVLLRTLPTNKAQESLTPGEPCITLEKVSTALLHSPLFPEMQSLYSAFLMCIIAKCSSILCSGAHSNLSLISQQLPWLFEKDYHTFVAHWETKLAKVGSEGVEPRGEVAQSFLSMIKNGFPIKLDEEQLKGLLELLEVISTLRLDSLLPSYHVHFFFLMFSMAVSTLGHCSCPLALQFLVTCYRLLSGLQRGRNARSVFRIMYVSDIFEVVLTSLLQASTEIQVREDDPAWLQLLQVSGEFLGQLMQMLIQLKLSLVLNFGKITAFLSRFSQGASSKELKIQSLRGRQLLLVALTKLCQSLGPYVKERKQLLEAPSVLPELLQQATIQMGAMLQLCLVPGITGRCLPSILLSAVPTLLEVDLSQHLREGQPHAQVVDADRTLLSHMTLYQDVYVQLLEELPALSGNTQSFQAALQFLTLFLLAPELHSKESSVFASIFYSVRKVLTGPGIPAPVTQDIEPHLEALLTQMFETGTIEHFGIVLQSILQGLDITQAWKSDLQIVLCAIRLLNLLLKCPLNGEKATLLWHTCPQIVTALMLQHREACQEQPVALVVVEPILDVLAILLRKGEETISNPHHVSLAFNILLTVPLDHLKPLEYGSVFLKMHNVLFSILQCHSKVMLKAIPSFLNSFNRLLFSVMHEGRQKDKGSMDDLPVVLECARLVERMFSHIATRAEEFTSFSPFLVSHYVTEAQKVTLYPAVKNLLQEGIYLILDLCMERDIQFLRASLQPGARDVFKDLHSDYLKYHKAKHEGEKRYTA", "length": 1522, "header": "tr|A0A9J7JBP3-1|A0A9J7JBP3_CRIGR Isoform 1 of Unhealthy ribosome biogenesis protein 2 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=Urb2 PE=4 SV=1 CANONICAL=A0A9J7JBP3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FID6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBP3/entry#A0A9J7FID6-1", "sequence": { "sequence": "MAAVYSGISFKLKSKTTSWEDKLKLAHFAWISHQCFLPNKEQVLLDWARQTLVAFYKKKLELQEDVVERLWVYVDNILHSRKLQNLLKNGKTVNLQISLVKIINERIAEFSLSGSQRNVCAILSCCQGILSAPALAVIYTAKPELLVALLSQLCWSVCRHPEGNMTAQLFEVIHLALDHYLKLQQQQANPRRVFGDMTGHLLQPCLVLRHLLFGGTWTQAGQGQLRQVLSREIRSKIDTVLRGGIFRHDLLSSYKEELLEQHQGNVKTGVLKNLLTPMETVITRLVEPDYIKSDLHALVVANSVSLLYRLFLDSYLKEENQFLCFQALPRLFGCLQISHLQEGQMEALALSDWTTELLAVEQLLNSVATSNIYNVAADRIRHGEIQFHFYRRVAELLINHLQAPVPAWFRCLKILMSLNHLILEPDLDDLLSSAWIDAEITEFRAKKAQEVLINTVFQTYAKLRQMPRLFEEVLGVICRPAAEALRQPLLASGPSVTLCACLLELPLSQILDTWSLVLDKFQSLVMPCLQSDTDMSLKALSLSSLLHCIMFNMPSLDNSMPLPVIRRTQCIMERMLKELVKPLLGLFLNLWSPEPELWQQKVSDSALLLSYTWAQVDTTLSLHCSQYYSLAGHLTGAALDISNLPLLLPGVETQLWKKVEKCIAQSRSLSRYCLEQLYLQKVKRILIQTNSQSKEALQTLRCDTAHILDSSRDCLNQKTVVAWDRQVSTMNESTYPVAHWHLIVSNLTVLIPYLCPDDVRYVASVLLRTLPTNKAQESLTPGEPCITLEKVSTALLHSPLFPEMQSLYSAFLMCIIAKCSSILCSGAHSNLSLISQQLPWLFEKDYHTFVAHWETKLAKVGSEGVEPRGEVAQSFLSMIKNGFPIKLDEEQLKGLLELLEVISTLRLDSLLPSYHVHFFFLMFSMAVSTLGHCSCPLALQFLVTCYRLLSGLQRGRNARSVFRIMYVSDIFEVVLTSLLQASTEIQVREDDPAWLQLLQVSGEFLGQLMQMLIQLKLSLVLNFGKITAFLSRFSQGASSKELKIQSLRGRQLLLVALTKLCQSLGPYVKERKQLLEAPSVLPELLQQATIQMGAMLQLCLVPGITGRCLPSILLSAVPTLLEVDLSQHLREGQPHAQVVDADRTLLSHMTLYQDVYVQLLEELPALSGNTQSFQAALQFLTLFLLAPELHSKESSVFASIFYSVRKVLTGPGIPAPVTQDIEPHLEALLTQMFETGTIEHFGIVLQSILQGLDITQAWKSDLQIVLCAIRLLNLLLKCPLNGEKATLLWHTCPQIVTALMLQHREACQEQPVALVVVEPILDVLAILLRKGEETISNPHHVSLAFNILLTVPLDHLKPLEYGSVFLKMHNVLFSILQCHSKEAWMTCQWFLSVHAWWKGCLATLLLELRSSPRSPHSWCPTM", "length": 1422, "header": "tr|A0A9J7FID6-1|A0A9J7JBP3_CRIGR Computationally mapped isoform of Unhealthy ribosome biogenesis protein 2 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=Urb2 PE=4 SV=1 CANONICAL=A0A9J7JBP3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GWQ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBP3/entry#A0A9J7GWQ0-1", "sequence": { "sequence": "MAAVYSGISFKLKSKTTSWEDKLKLAHFAWISHQCFLPNKEQVLLDWARQTLVAFYKKKLELQEDVVERLWVYVDNILHSRKLQNLLKNGKTVNLQISLVKIINERIAEFSLSGSQRNVCAILSCCQGILSAPALAVIYTAKPELLVALLSQLCWSVCRHPEGNMTAQLFEVIHLALDHYLKLQQQQANPRRVFGDMTGHLLQPCLVLRHLLFGGTWTQAGQGQLRQVLSREIRSKIDTVLRGGIFRHDLLSSYKEELLEQHQGNVKTGVLKNLLTPMETVITRLVEPDYIKSDLHALVVANSVSLLYRLFLDSYLKEENQFLCFQALPRLFGCLQISHLQEGQMEALALSDWTTELLAVEQLLNSVATSNIYNVAADRIRHGEIQFHFYRRVAELLINHLQAPVPAWFRCLKILMSLNHLILEPDLDDLLSSAWIDAEITEFRAKKAQEVLINTVFQTYAKLRQMPRLFEEVLGVICRPAAEALRQPLLASGPSVTLCACLLELPLSQILDTWSLVLDKFQSLVMPCLQSDTDMSLKALSLSSLLHCIMFNMPSLDNSMPLPVIRRTQCIMERMLKELVKPLLGLFLNLWSPEPELWQQKVSDSALLLSYTWAQVDTTLSLHCSQYYSLAGHLTGAALDISNLPLLLPGVETQLWKKVEKCIAQSRSLSRYCLEQLYLQKVKRILIQTNSQSKEALQTLRCDTAHILDSSRDCLNQKTVVAWDRQVSTMNESTYPVAHWHLIVSNLTVLIPYLCPDDVRYVASVLLRTLPTNKAQESLTPGEPCITLEKVSTALLHSPLFPEMQSLYSAFLMCIIAKCSSILCSGAHSNLSLISQQLPWLFEKDYHTFVAHWETKLAKVGSEGVEPRGEVAQSFLSMIKNGFPIKLDEEQLKGLLELLEVISTLRLDSLLPSYHVHFFFLMFSMAVSTLGHCSCPLALQFLVTCYRLLSGLQRGRNARSVFRIMYVSDIFEVVLTSLLQASTEIQVREDDPAWLQLLQVSGEFLGQLMQMLIQLKLSLVLNFGKITAFLSRFSQGASSKELKIQSLRGRQLLLVALTKLCQSLGPYVKERKQLLEAPSVLPELLQQATIQMGAMLQLCLVPGITGRCLPSILLSAVPTLLEVDLSQHLREGQPHAQVVDADRTLLSHMTLYQDVYVQLLEELPALSGNTQSFQAALQFLTLFLLAPELHSKESSVFASIFYSVRKVLTGPGIPAPVTQDIEPHLEALLTQMFETGTIEHFGIVLQSILQGLDITQAWKSDLQIVLCAIRLLNLLLKCPLNGEKATLLWHTCPQIVTALMVMLKAIPSFLNSFNRLLFSVMHEGRQKDKGNLVPCCEEPAPGGDLSHLGSLHGA", "length": 1354, "header": "tr|A0A9J7GWQ0-1|A0A9J7JBP3_CRIGR Computationally mapped isoform of Unhealthy ribosome biogenesis protein 2 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=Urb2 PE=4 SV=1 CANONICAL=A0A9J7JBP3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JBP3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBP3/entry#A0A9J7JBP3-1", "sequence": { "sequence": "MAAVYSGISFKLKSKTTSWEDKLKLAHFAWISHQCFLPNKEQVLLDWARQTLVAFYKKKLELQEDVVERLWVYVDNILHSRKLQNLLKNGKTVNLQISLVKIINERIAEFSLSGSQRNVCAILSCCQGILSAPALAVIYTAKPELLVALLSQLCWSVCRHPEGNMTAQLFEVIHLALDHYLKLQQQQANPRRVFGDMTGHLLQPCLVLRHLLFGGTWTQAGQGQLRQVLSREIRSKIDTVLRGGIFRHDLLSSYKEELLEQHQGNVKTGVLKNLLTPMETVITRLVEPDYIKSDLHALVVANSVSLLYRLFLDSYLKEENQFLCFQALPRLFGCLQISHLQEGQMEALALSDWTTELLAVEQLLNSVATSNIYNVAADRIRHGEIQFHFYRRVAELLINHLQAPVPAWFRCLKILMSLNHLILEPDLDDLLSSAWIDAEITEFRAKKAQEVLINTVFQTYAKLRQMPRLFEEVLGVICRPAAEALRQPLLASGPSVTLCACLLELPLSQILDTWSLVLDKFQSLVMPCLQSDTDMSLKALSLSSLLHCIMFNMPSLDNSMPLPVIRRTQCIMERMLKELVKPLLGLFLNLWSPEPELWQQKVSDSALLLSYTWAQVDTTLSLHCSQYYSLAGHLTGAALDISNLPLLLPGVETQLWKKVEKCIAQSRSLSRYCLEQLYLQKVKRILIQTNSQSKEALQTLRCDTAHILDSSRDCLNQKTVVAWDRQVSTMNESTYPVAHWHLIVSNLTVLIPYLCPDDVRYVASVLLRTLPTNKAQESLTPGEPCITLEKVSTALLHSPLFPEMQSLYSAFLMCIIAKCSSILCSGAHSNLSLISQQLPWLFEKDYHTFVAHWETKLAKVGSEGVEPRGEVAQSFLSMIKNGFPIKLDEEQLKGLLELLEVISTLRLDSLLPSYHVHFFFLMFSMAVSTLGHCSCPLALQFLVTCYRLLSGLQRGRNARSVFRIMYVSDIFEVVLTSLLQASTEIQVREDDPAWLQLLQVSGEFLGQLMQMLIQLKLSLVLNFGKITAFLSRFSQGASSKELKIQSLRGRQLLLVALTKLCQSLGPYVKERKQLLEAPSVLPELLQQATIQMGAMLQLCLVPGITGRCLPSILLSAVPTLLEVDLSQHLREGQPHAQVVDADRTLLSHMTLYQDVYVQLLEELPALSGNTQSFQAALQFLTLFLLAPELHSKESSVFASIFYSVRKVLTGPGIPAPVTQDIEPHLEALLTQMFETGTIEHFGIVLQSILQGLDITQAWKSDLQIVLCAIRLLNLLLKCPLNGEKATLLWHTCPQIVTALMLQHREACQEQPVALVVVEPILDVLAILLRKGEETISNPHHVSLAFNILLTVPLDHLKPLEYGSVFLKMHNVLFSILQCHSKVMLKAIPSFLNSFNRLLFSVMHEGRQKDKGSMDDLPVVLECARLVERMFSHIATRAEEFTSFSPFLVSHYVTEAQKVTLYPAVKNLLQEGIYLILDLCMERDIQFLRASLQPGARDVFKDLHSDYLKYHKAKHEGEKRYTA", "length": 1522, "header": "tr|A0A9J7JBP3-1|A0A9J7JBP3_CRIGR Isoform 1 of Unhealthy ribosome biogenesis protein 2 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=Urb2 PE=4 SV=1 CANONICAL=A0A9J7JBP3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JHK7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBP3/entry#A0A9J7JHK7-1", "sequence": { "sequence": "MAAVYSGISFKLKSKTTSWEDKLKLAHFAWISHQCFLPNKEQVLLDWARQTLVAFYKKKLELQEDVVERLWVYVDNILHSRKLQNLLKNGKTVNLQISLVKIINERIAEFSLSGSQRNVCAILSCCQGILSAPALAVIYTAKPELLVALLSQLCWSVCRHPEGNMTAQLFEVIHLALDHYLKLQQQQANPRRVFGDMTGHLLQPCLVLRHLLFGGTWTQAGQGQLRQVLSREIRSKIDTVLRGGIFRHDLLSSYKEELLEQHQGNVKTGVLKNLLTPMETVITRLVEPDYIKSDLHALVVANSVSLLYRLFLDSYLKEENQFLCFQALPRLFGCLQISHLQEGQMEALALSDWTTELLAVEQLLNSVATSNIYNVAADRIRHGEIQFHFYRRVAELLINHLQAPVPAWFRCLKILMSLNHLILEPDLDDLLSSAWIDAEITEFRAKKAQEVLINTVFQTYAKLRQMPRLFEEVLGVICRPAAEALRQPLLASGPSVTLCACLLELPLSQILDTWSLVLDKFQSLVMPCLQSDTDMSLKALSLSSLLHCIMFNMPSLDNSMPLPVIRRTQCIMERMLKELVKPLLGLFLNLWSPEPELWQQKVSDSALLLSYTWAQVDTTLSLHCSQYYSLAGHLTGAALDISNLPLLLPGVETQLWKKVEKCIAQSRSLSRYCLEQLYLQKVKRILIQTNSQSKEALQTLRCDTAHILDSSRDCLNQKTVVAWDRQVSTMNESTYPVAHWHLIVSNLTVLIPYLCPDDVRYVASVLLRTLPTNKAQESLTPGEPCITLEKVSTALLHSPLFPEMQSLYSAFLMCIIAKCSSILCSGAHSNLSLISQQLPWLFEKDYHTFVAHWETKLAKVGSEGVEPRGEVAQSFLSMIKNGFPIKLDEEQLKGLLELLEVISTLRLDSLLPSYHVHFFFLMFSMAVSTLGHCSCPLALQFLVTCYRLLSGLQRGRNARSVFRIMYVSDIFEVVLTSLLQASTEIQVREDDPAWLQLLQVSGEFLGQLMQMLIQLKLSLVLNFGKITAFLSRFSQGASSKELKIQSLRGRQLLLVALTKLCQSLGPYVKERKQLLEAPSVLPELLQQATIQMGAMLQLCLVPGITGRCLPSILLSAVPTLLEVDLSQHLREGQPHAQVVDADRTLLSHMTLYQDVYVQLLEELPALSGNTQSFQAALQFLTLFLLAPELHSKESSVFASIFYSVRKVLTGPGIPAPVTQDIEPHLEALLTQMFETGTIEHFGIVLQSILQGLDITQAWKSDLQIVLCAIRLLNLLLKCPLNGEKATLLWHTCPQIVTALMLQHREACQEQPVALVVVEPILDVLAILLRKGEETISNPHHVSLAFNILLTVPLDHLKPLEYGSVFLKMHNVLFSILQCHSKVMLKAIPSFLNSFNRLLFSVMHEGRQKDKGNLVPCCEEPAPGGDLSHLGSLHGA", "length": 1435, "header": "tr|A0A9J7JHK7-1|A0A9J7JHK7_CRIGR Computationally mapped isoform of Unhealthy ribosome biogenesis protein 2 homolog isoform X3 OS=Cricetulus griseus OX=10029 GN=Urb2 PE=4 SV=1 CANONICAL=A0A9J7JBP3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JHZ7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBP3/entry#A0A9J7JHZ7-1", "sequence": { "sequence": "MAAVYSGISFKLKSKTTSWEDKLKLAHFAWISHQCFLPNKEQVLLDWARQTLVAFYKKKLELQEDVVERLWVYVDNILHSRKLQNLLKNGKTVNLQISLVKIINERIAEFSLSGSQRNVCAILSCCQGILSAPALAVIYTAKPELLVALLSQLCWSVCRHPEGNMTAQLFEVIHLALDHYLKLQQQQANPRRVFGDMTGHLLQPCLVLRHLLFGGTWTQAGQGQLRQVLSREIRSKIDTVLRGGIFRHDLLSSYKEELLEQHQGNVKTGVLKNLLTPMETVITRLVEPDYIKSDLHALVVANSVSLLYRLFLDSYLKEENQFLCFQALPRLFGCLQISHLQEGQMEALALSDWTTELLAVEQLLNSVATSNIYNVAADRIRHGEIQFHFYRRVAELLINHLQAPVPAWFRCLKILMSLNHLILEPDLDDLLSSAWIDAEITEFRAKKAQEVLINTVFQTYAKLRQMPRLFEEVLGVICRPAAEALRQPLLASGPSVTLCACLLELPLSQILDTWSLVLDKFQSLVMPCLQSDTDMSLKALSLSSLLHCIMFNMPSLDNSMPLPVIRRTQCIMERMLKELVKPLLGLFLNLWSPEPELWQQKVSDSALLLSYTWAQVDTTLSLHCSQYYSLAGHLTGAALDISNLPLLLPGVETQLWKKVEKCIAQSRSLSRYCLEQLYLQKVKRILIQTNSQSKEALQTLRCDTAHILDSSRDCLNQKTVVAWDRQVSTMNESTYPVAHWHLIVSNLTVLIPYLCPDDVRYVASVLLRTLPTNKAQESLTPGEPCITLEKVSTALLHSPLFPEMQSLYSAFLMCIIAKCSSILCSGAHSNLSLISQQLPWLFEKDYHTFVAHWETKLAKVGSEGVEPRGEVAQSFLSMIKNGFPIKLDEEQLKGLLELLEVISTLRLDSLLPSYHVHFFFLMFSMAVSTLGHCSCPLALQFLVTCYRLLSGLQRGRNARSVFRIMYVSDIFEVVLTSLLQASTEIQVREDDPAWLQLLQVSGEFLGQLMQMLIQLKLSLVLNFGKITAFLSRFSQGASSKELKIQSLRGRQLLLVALTKLCQSLGPYVKERKQLLEAPSVLPELLQQATIQMGAMLQLCLVPGITGRCLPSILLSAVPTLLEVDLSQHLREGQPHAQVVDADRTLLSHMTLYQDVYVQLLEELPALSGNTQSFQAALQFLTLFLLAPELHSKESSVFASIFYSVRKVLTGPGIPAPVTQDIEPHLEALLTQMFETGTIEHFGIVLQSILQGLDITQAWKSDLQIVLCAIRLLNLLLKCPLNGEKATLLWHTCPQIVTALMVMLKAIPSFLNSFNRLLFSVMHEGRQKDKGSMDDLPVVLECARLVERMFSHIATRAEEFTSFSPFLVSHYVTEAQKVTLYPAVKNLLQEGIYLILDLCMERDIQFLRASLQPGARDVFKDLHSDYLKYHKAKHEGEKRYTA", "length": 1441, "header": "tr|A0A9J7JHZ7-1|A0A9J7JHZ7_CRIGR Computationally mapped isoform of Unhealthy ribosome biogenesis protein 2 homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=Urb2 PE=4 SV=1 CANONICAL=A0A9J7JBP3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FID6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FID6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FID6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FID6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100768105", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768105", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleolus", "id": "GO:0005730", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005730", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JBP3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBP3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "ribosome biogenesis", "id": "GO:0042254", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042254", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JBP3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBP3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 164, "end_pos": 166, "annotation": "n_glycosylation_sequon" }, { "start_pos": 731, "end_pos": 733, "annotation": "n_glycosylation_sequon" }, { "start_pos": 746, "end_pos": 748, "annotation": "n_glycosylation_sequon" }, { "start_pos": 830, "end_pos": 832, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JBP3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBP3" }, { "id": "PF10441", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10441" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Nucleolar 27S pre-rRNA processing Urb2/Npa2 C-terminal", "eco_id": "ECO_0000259", "start_pos": 1320, "end_pos": 1514, "start_aa": "Ile", "end_aa": "His", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 164, "end_pos": 166 }, { "start_pos": 731, "end_pos": 733 }, { "start_pos": 746, "end_pos": 748 }, { "start_pos": 830, "end_pos": 832 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7JDV6-1", "uniprot_ac": "A0A9J7JDV6", "uniprot_id": "A0A9J7JDV6_CRIGR", "mass": { "chemical_mass": 185016.0, "monoisotopic_mass": 185016.0 }, "refseq": { "ac": "XP_027264356", "name": "EH domain-binding protein 1-like protein 1 isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027264356" }, "gene_names": [ { "name": "LOC100772499", "type": "recommended", "evidence": [ { "id": "A0A9J7JDV6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDV6" } ] }, { "name": "LOC100772499", "type": "synonym", "evidence": [ { "id": "XP_027264356", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027264356" } ] } ], "protein_names": [ { "name": "EH domain-binding protein 1-like protein 1 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_027264356", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027264356" }, { "id": "A0A9J7JDV6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDV6/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027264356", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027264356" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JDV6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDV6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100772499", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDV6", "locus": {} } ], "crossref": [ { "id": "cd21198", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21198", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd21255", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21255", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100772499", "url": "https://www.ncbi.nlm.nih.gov/gene/100772499", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001715", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001715", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019448", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019448", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022735", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022735", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036872", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036872", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050540", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050540", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100772499", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772499", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JDV6", "url": "https://www.orthodb.org/?gene=A0A9J7JDV6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23167", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23167", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23167:SF42", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23167:SF42", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00307", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00307", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF10358", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10358", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12130", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12130", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027264356", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027264356", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FMX3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMX3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FMX3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMX3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FNG4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNG4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FNG4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNG4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FNJ3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNJ3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FNJ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNJ3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FNT1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNT1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FNT1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FNT1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FPB9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPB9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FPB9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPB9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FQY6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQY6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FQY6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQY6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FRB7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRB7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FRB7-1", 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"database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JDV6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDV6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JI27", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JI27", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JI27-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JI27-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JK21", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK21", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JK21-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JK21-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JKQ4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKQ4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JKQ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKQ4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JLL9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLL9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JLL9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JLL9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTSVWKRLQRVGKRAAKFQFVACYHELVLECTKKWQPDKLVVVWTRRNRRICSKAHSWQPGIQNPYRGTVVWMVPENVDISVTLYRDPHVDQYEAKEWTFIIENESKGQRKILATVDVDLAGHAGPVPAQVPLRLRLKPKSVKVVHAELSLTLSGVLLREGRATDDDMQSLASLMSVKPSDVGNLDDFAESDEDEANGPGAPEVRARGPQSDLSRELKTLCEEDEGHKGPQQAAARSCSAEEASPAPASAPAPPARASRGQGSEPAAIAGGQVGPETPRPPQSPPETGSTRQPDQDMVPTPAPRLRKGSDVSRSPVPYRGEEDPNTSEDPPTGVGSSGETQVQISSQGEAEASGTEPETDTEGRGSRDALGRERSEAEEGDTGDRPKASGSGSREKNTKEPCLTAGEAEESSKLPQVDAEQRSKVHVAVEGPEAAGLVPKARLWEPPEAPPRSAQRRMGVTTQEEAPSDPNQSPAEPEGHVGPLRGAMPAGQERESMEVRGRAPVSERTGLEQGPSAGAASAGAQGSGFHKVPSVGQEAKVGESRVLETETEWVPGKVIGMLNTDVGRPESPEIETGTAESEVLEAQGSEAARSEVLEPEATGTAQSEVLRNQDKEIGVLGMLRTGAEIRESEEFGIKKIVGDFTVPGTKTVTETEILEAQEVADGGAGILKVEEVEILGTPKTVAGEAEAGILETQKIAAEGSEAPKVGTEMAKSDILGMQETEVGAWSIPRTGTEATVTEILGTHRIAFEGSGCPQIQSRIVETQETEVGGSEVSVTDTVEDVILQSHGVLWVEAEKPESKIEGSLEIKEGDFRILEVDTGPVEAKILEAPKIAAGVFEVPGIGTEGARALETKAGSSEVPETEAKEAEILEVKELSGGSVALRIVAEITESKMLGAQKTEVEDPELSQTEVRGAEAKVLGTQKIASEGAGVPGMEAKMEESEVSMAQETEMEIWEVPEVETVDAELFGTQKAEIGLETPELETETITSEILEAQETEVRESGLLGTESEVAEVVVPETQKIEAEVARAQEIEAGDSVISRPEAGTAKAEVLRAQWTETVVLESEEAKTDTLGVQEPGAWGTLKYEALSVAVAKQRFSGAEGIASEVSRVQETESKVLGIVEAKSWTVELQEAEREGFESPENKSDIFEAQEAESGVLGTVKGKEADESLEEASLTKAQVASGAGTGVPRPLGASSPEEPEEDRRLLGSQAPSALVSSSQSLLEWCQEVTRGYRGVCITNFTTSWRNGLAFCAILHRFYPDKIDYLSLDPLNIKQNNKQAFDGFAALGVSRLLEPADMVLLSVPDKLIVMTYLCQIRAFCTGQELQLVQLEGSGGPGTYRVGNAQPSLPDGLDAGDLAQRLREHGAEAPTEPKEAVNRGAGAVPKVASRDSGLGCASKDGEAEAAQEAVPPEAPSDGPRARSSTSPVAPTEGLVNGVGVPGGVSGVRLRRSSVSGEAGPVPPPRAHGSFSHVRDADLLKKRRSRLRNSNSFSVDDPDSGAAVGAGAAGAGAVEGPNPDSSLDSGPRTAPGPQQPSGGNPPPEEPPPSPGEEAGLQRFQDTSQYVCAELQALEQEQRQIDGRAAEVEKQLRSLMETGANRLQEEVLIEEWFTLVNKKNALIRRQDQLQLLIEEQDLERRFDLLSRELRAMLAIEEWQKTVAQQHREQLLLEELVSLVNQRDELVRDLDQKERIALEEDERLERGLEQRRRKVSRQLSRRERCMLS", "length": 1726, "header": "tr|A0A9J7JDV6-1|A0A9J7JDV6_CRIGR Isoform 1 of EH domain-binding protein 1-like protein 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100772499 PE=4 SV=1 CANONICAL=A0A9J7JDV6-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FMX3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDV6/entry#A0A9J7FMX3-1", "sequence": { "sequence": "MTSVWKRLQRVGKRAAKFQFVACYHELVLECTKKWQPDKLVVVWTRRNRRICSKAHSWQPGIQNPYRGTVVWMVPENVDISVTLYRDPHVDQYEAKEWTFIIENESKGQRKILATVDVDLAGHAGPVPAQVPLRLRLKPKSVKVVHAELSLTLSGVLLREGRATDDDMQSLASLMSVKPSDVGNLDDFAESDEDEANGPGAPEVRARGPQSDLSRELKTLCEEDEGHKGPQQAAARSCSAEEASPAPASAPAPPARASRGQGSEPAAIAGGQVGPETPRPPQSPPETGSTRQPDQDMVPTPAPRLRKGSDVSRSPVPYRGEEDPNTSEDPPTGVGSSGETQVQISSQGEAEASGTEPETDTEGRGSRDALGRERSEAEEGDTGDRPKASGSGSREKNTKEPCLTAGEAEESSKLPQVDAEQRSKVHVAVEGPEAAGLVPKARLWEPPEAPPRSAQRRMGVTTQEEAPSDPNQSPAEPEGHVGPLRGAMPAGQERESMEVRGRAPVSERTGLEQGPSAGAASAGAQGSGFHKVPSVGQEAKVGESRVLETETEWVPGKVIGMLNTDVGRPESPEIETGTAESEVLEAQGSEAARSEVLEPEATGTAQSEAPSALVSSSQSLLEWCQEVTRGYRGVCITNFTTSWRNGLAFCAILHRFYPDKIDYLSLDPLNIKQNNKQAFDGFAALGVSRLLEPADMVLLSVPDKLIVMTYLCQIRAFCTGQELQLVQLEGSGGPGTYRVGNAQPSLPDGLDAGDLAQRLREHGAEAPTEPKEAVNRGAGAVPKVASRDSGLGCASKDGEAEAAQEAVPPEAPSDGPRARSSTSPVAPTEGLVNGVGVPGGVSGVRLRRSSVSGEAGPVPPPRAHGSFSHVRDADLLKKRRSRLRNSNSFSVDDPDSGAAVGAGAAGAGAVEGPNPDSSLDSGPRTAPGPQQPSGGNPPPEEPPPSPGEEAGLQRFQDTSQYVCAELQALEQEQRQIDGRAAEVEKQLRSLMETGANRLQEEVLIEEWFTLVNKKNALIRRQDQLQLLIEEQDLERRFDLLSRELRAMLAIEEWQKTVAQQHREQLLLEELVSLVNQRDELVRDLDQKERIALEEDERLERGLEQRRRKVSRQLSRRERCMLS", "length": 1122, "header": "tr|A0A9J7FMX3-1|A0A9J7JDV6_CRIGR Computationally mapped isoform of EH domain-binding protein 1-like protein 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100772499 PE=4 SV=1 CANONICAL=A0A9J7JDV6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FNG4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDV6/entry#A0A9J7FNG4-1", "sequence": { "sequence": "MTSVWKRLQRVGKRAAKFQFVACYHELVLECTKKWQPDKLVVVWTRRNRRICSKAHSWQPGIQNPYRGTVVWMVPENVDISVTLYRDPHVDQYEAKEWTFIIENESKGQRKILATVDVDLAGHAGPVPAQVPLRLRLKPKSVKVVHAELSLTLSGVLLREGRATDDDMQSLASLMSVKPSDVGNLDDFAESDEDEANGPGAPEVRARGPQSDLSRELKTLCEEDEGHKGPQQAAARSCSAEEASPAPASAPAPPARASRGQGSEPAAIAGGQVGPETPRPPQSPPETGSTRQPDQDMVPTPAPRLRKGSDVSRSPVPYRGEEDPNTSEDPPTGVGSSGETQVQISSQGEAEASGTEPETDTEGRGSRDALGRERSEAEEGDTGDRPKASGSGSREKNTKEPCLTAGEAEESSKLPQVDAEQRSKVHVAVEGPEAAGLVPKARLWEPPEAPPRSAQRRMGVTTQEEAPSDPNQSPAEPEGHVGPLRGAMPAGQERESMEVRGRAPVSERTGLEQGPSAGAASAGAQGSGFHKVPSVGQEAKVGESRVLETETEWVPGKVIGMLNTDVGRPESPEIETGTAESEVLEAQGSEAARSEVLEPEATGTAQSEAQEAESGVLGTVKGKEADESLEEASLTKAQVASGAGTGVPRPLGASSPEEPEEDRRLLGSQAPSALVSSSQSLLEWCQEVTRGYRGVCITNFTTSWRNGLAFCAILHRFYPDKIDYLSLDPLNIKQNNKQAFDGFAALGVSRLLEPADMVLLSVPDKLIVMTYLCQIRAFCTGQELQLVQLEGSGGPGTYRVGNAQPSLPDGLDAGDLAQRLREHGAEAPTEPKEAVNRGAGAVPKVASRDSGLGCASKDGEAEAAQEAVPPEAPSDGPRARSSTSPVAPTEGLVNGVGVPGGVSGVRLRRSSVSGEAGPVPPPRAHGSFSHVRDADLLKKRRSRLRNSNSFSVDDPDSGAAVGAGAAGAGAVEGPNPDSSLDSGPRTAPGPQQPSGGNPPPEEPPPSPGEEAGLQRFQDTSQYVCAELQALEQEQRQIDGRAAEVEKQLRSLMETGANRLQEEVLIEEWFTLVNKKNALIRRQDQLQLLIEEQDLERRFDLLSRELRAMLAIEEWQKTVAQQHREQLLLEELVSLVNQRDELVRDLDQKERIALEEDERLERGLEQRRRKVSRQLSRRERCMLS", "length": 1183, "header": "tr|A0A9J7FNG4-1|A0A9J7JDV6_CRIGR Computationally mapped isoform of EH domain-binding protein 1-like protein 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100772499 PE=4 SV=1 CANONICAL=A0A9J7JDV6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FNJ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDV6/entry#A0A9J7FNJ3-1", "sequence": { "sequence": "MTSVWKRLQRVGKRAAKFQFVACYHELVLECTKKWQPDKLVVVWTRRNRRICSKAHSWQPGIQNPYRGTVVWMVPENVDISVTLYRDPHVDQYEAKEWTFIIENESKGQRKILATVDVDLAGHAGPVPAQVPLRLRLKPKSVKVVHAELSLTLSGVLLREGRATDDDMQSLASLMSVKPSDVGNLDDFAESDEDEANGPGAPEVRARGPQSDLSRELKTLCEEDEGHKGPQQAAARSCSAEEASPAPASAPAPPARASRGQGSEPAAIAGGQAQEAESGVLGTVKGKEADESLEEASLTKAQVASGAGTGVPRPLGASSPEEPEEDRRLLGSQAPSALVSSSQSLLEWCQEVTRGYRGVCITNFTTSWRNGLAFCAILHRFYPDKIDYLSLDPLNIKQNNKQAFDGFAALGVSRLLEPADMVLLSVPDKLIVMTYLCQIRAFCTGQELQLVQLEGSGGPGTYRVGNAQPSLPDGLDAGDLAQRLREHGAEAPTEPKEAVNRGAGAVPKVASRDSGLGCASKDGEAEAAQEAVPPEAPSDGPRARSSTSPVAPTEGLVNGVGVPGGVSGVRLRRSSVSGEAGPVPPPRAHGSFSHVRDADLLKKRRSRLRNSNSFSVDDPDSGAAVGAGAAGAGAVEGPNPDSSLDSGPRTAPGPQQPSGGNPPPEEPPPSPGEEAGLQRFQDTSQYVCAELQALEQEQRQIDGRAAEVEKQLRSLMETGANRLQEEVLIEEWFTLVNKKNALIRRQDQLQLLIEEQDLERRFDLLSRELRAMLAIEEWQKTVAQQHREQLLLEELVSLVNQRDELVRDLDQKERIALEEDERLERGLEQRRRKVSRQLSRRERCMLS", "length": 847, "header": "tr|A0A9J7FNJ3-1|A0A9J7JDV6_CRIGR Computationally mapped isoform of EH domain-binding protein 1-like protein 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100772499 PE=4 SV=1 CANONICAL=A0A9J7JDV6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FNT1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDV6/entry#A0A9J7FNT1-1", "sequence": { "sequence": "MTSVWKRLQRVGKRAAKFQFVACYHELVLECTKKWQPDKLVVVWTRRNRRICSKAHSWQPGIQNPYRGTVVWMVPENVDISVTLYRDPHVDQYEAKEWTFIIENESKGQRKILATVDVDLAGHAGPVPAQVPLRLRLKPKSVKVVHAELSLTLSGVLLREGRATDDDMQSLASLMSVKPSDVGNLDDFAESDEDEANGPGAPEVRARGPQSDLSRELKTLCEEDEGHKGPQQAAARSCSAEEASPAPASAPAPPARASRGQGSEPAAIAGGQAPSALVSSSQSLLEWCQEVTRGYRGVCITNFTTSWRNGLAFCAILHRFYPDKIDYLSLDPLNIKQNNKQAFDGFAALGVSRLLEPADMVLLSVPDKLIVMTYLCQIRAFCTGQELQLVQLEGSGGPGTYRVGNAQPSLPDGLDAGDLAQRLREHGAEAPTEPKEAVNRGAGAVPKVASRDSGLGCASKDGEAEAAQEAVPPEAPSDGPRARSSTSPVAPTEGLVNGVGVPGGVSGVRLRRSSVSGEAGPVPPPRAHGSFSHVRDADLLKKRRSRLRNSNSFSVDDPDSGAAVGAGAAGAGAVEGPNPDSSLDSGPRTAPGPQQPSGGNPPPEEPPPSPGEEAGLQRFQDTSQYVCAELQALEQEQRQIDGRAAEVEKQLRSLMETGANRLQEEVLIEEWFTLVNKKNALIRRQDQLQLLIEEQDLERRFDLLSRELRAMLAIEEWQKTVAQQHREQLLLEELVSLVNQRDELVRDLDQKERIALEEDERLERGLEQRRRKVSRQLSRRERCMLS", "length": 786, "header": "tr|A0A9J7FNT1-1|A0A9J7JDV6_CRIGR Computationally mapped isoform of EH domain-binding protein 1-like protein 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100772499 PE=4 SV=1 CANONICAL=A0A9J7JDV6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FPB9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDV6/entry#A0A9J7FPB9-1", "sequence": { "sequence": "MTSVWKRLQRVGKRAAKFQFVACYHELVLECTKKWQPDKLVVVWTRRNRRICSKAHSWQPGIQNPYRGTVVWMVPENVDISVTLYRDPHVDQYEAKEWTFIIENESKGQRKILATVDVDLAGHAGPVPAQVPLRLRLKPKSVKVVHAELSLTLSGVLLREGRATDDDMQSLASLMSVKPSDVGNLDDFAESDEDEANGPGAPEVRARGPQSDLSRELKTLCEEDEGHKGPQQAAARSCSAEEASPAPASAPAPPARASRGQGSEPAAIAGGQVGPETPRPPQSPPETGSTRQPDQDMVPTPAPRLRKGSDVSRSPVPYRGEEDPNTSEDPPTGEAESGVLGTVKGKEADESLEEASLTKAQVASGAGTGVPRPLGASSPEEPEEDRRLLGSQAPSALVSSSQSLLEWCQEVTRGYRGVCITNFTTSWRNGLAFCAILHRFYPDKIDYLSLDPLNIKQNNKQAFDGFAALGVSRLLEPADMVLLSVPDKLIVMTYLCQIRAFCTGQELQLVQLEGSGGPGTYRVGNAQPSLPDGLDAGDLAQRLREHGAEAPTEPKEAVNRGAGAVPKVASRDSGLGCASKDGEAEAAQEAVPPEAPSDGPRARSSTSPVAPTEGLVNGVGVPGGVSGVRLRRSSVSGEAGPVPPPRAHGSFSHVRDADLLKKRRSRLRNSNSFSVDDPDSGAAVGAGAAGAGAVEGPNPDSSLDSGPRTAPGPQQPSGGNPPPEEPPPSPGEEAGLQRFQDTSQYVCAELQALEQEQRQIDGRAAEVEKQLRSLMETGANRLQEEVLIEEWFTLVNKKNALIRRQDQLQLLIEEQDLERRFDLLSRELRAMLAIEEWQKTVAQQHREQLLLEELVSLVNQRDELVRDLDQKERIALEEDERLERGLEQRRRKVSRQLSRRERCMLS", "length": 906, "header": "tr|A0A9J7FPB9-1|A0A9J7JDV6_CRIGR Computationally mapped isoform of EH domain-binding protein 1-like protein 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100772499 PE=4 SV=1 CANONICAL=A0A9J7JDV6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FQY6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDV6/entry#A0A9J7FQY6-1", "sequence": { "sequence": "MTSVWKRLQRVGKRAAKFQFVACYHELVLECTKKWQPDKLVVVWTRRNRRICSKAHSWQPGIQNPYRGTVVWMVPENVDISVTLYRDPHVDQYEAKEWTFIIENESKGQRKILATVDVDLAGHAGPVPAQVPLRLRLKPKSVKVVHAELSLTLSGVLLREGRATDDDMQSLASLMSVKPSDVGNLDDFAESDEDEANGPGAPEVRARGPQSDLSRELKTLCEEDEGHKGPQQAAARSCSAEEASPAPASAPAPPARASRGQGSEPAAIAGGQVGPETPRPPQSPPETGSTRQPDQDMVPTPAPRLRKGSDVSRSPVPYRGEEDPNTSEDPPTGVGSSGETQVQISSQGEAEASGTEPETDTEGRGSRDALGRERSEAEEGDTGDRPKASGSGSREKNTKEPCLTAGEAEESSKLPQVDAEQRSKVHVAVEGPEAAGLVPKARLWEPPEAPPRSAQRRMGVTTQEEAPSDPNQSPAEPEGHVGPLRGAMPAGQERESMEVRGRAPVSERTGLEQGPSAGAASAGAQGSGFHKVPSVGQEAKVGESRVLETETEWVPGKVIGMLNTDVGRPESPEIETGTAESEVLEAQGSEAARSEVLEPEATGTAQSEEAESGVLGTVKGKEADESLEEASLTKAQVASGAGTGVPRPLGASSPEEPEEDRRLLGSQAPSALVSSSQSLLEWCQEVTRGYRGVCITNFTTSWRNGLAFCAILHRFYPDKIDYLSLDPLNIKQNNKQAFDGFAALGVSRLLEPADMVLLSVPDKLIVMTYLCQIRAFCTGQELQLVQLEGSGGPGTYRVGNAQPSLPDGLDAGDLAQRLREHGAEAPTEPKEAVNRGAGAVPKVASRDSGLGCASKDGEAEAAQEAVPPEAPSDGPRARSSTSPVAPTEGLVNGVGVPGGVSGVRLRRSSVSGEAGPVPPPRAHGSFSHVRDADLLKKRRSRLRNSNSFSVDDPDSGAAVGAGAAGAGAVEGPNPDSSLDSGPRTAPGPQQPSGGNPPPEEPPPSPGEEAGLQRFQDTSQYVCAELQALEQEQRQIDGRAAEVEKQLRSLMETGANRLQEEVLIEEWFTLVNKKNALIRRQDQLQLLIEEQDLERRFDLLSRELRAMLAIEEWQKTVAQQHREQLLLEELVSLVNQRDELVRDLDQKERIALEEDERLERGLEQRRRKVSRQLSRRERCMLS", "length": 1181, "header": "tr|A0A9J7FQY6-1|A0A9J7JDV6_CRIGR Computationally mapped isoform of EH domain-binding protein 1-like protein 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100772499 PE=4 SV=1 CANONICAL=A0A9J7JDV6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FRB7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDV6/entry#A0A9J7FRB7-1", "sequence": { "sequence": "MTSVWKRLQRVGKRAAKFQFVACYHELVLECTKKWQPDKLVVVWTRRNRRICSKAHSWQPGIQNPYRGTVVWMVPENVDISVTLYRDPHVDQYEAKEWTFIIENESKGQRKILATVDVDLAGHAGPVPAQVPLRLRLKPKSVKVVHAELSLTLSGVLLREGRATDDDMQSLASLMSVKPSDVGNLDDFAESDEDEANGPGAPEVRARGPQSDLSRELKTLCEEDEGHKGPQQAAARSCSAEEASPAPASAPAPPARASRGQGSEPAAIAGGQVGPETPRPPQSPPETGSTRQPDQDMVPTPAPRLRKGSDVSRSPVPYRGEEDPNTSEDPPTGVGSSGETQVQISSQGEAEASGTEPETDTEGRGSRDALGRERSEAEEGDTGDRPKASGSGSREKNTKEPCLTAGEAEESSKLPQVDAEQRSKAPSALVSSSQSLLEWCQEVTRGYRGVCITNFTTSWRNGLAFCAILHRFYPDKIDYLSLDPLNIKQNNKQAFDGFAALGVSRLLEPADMVLLSVPDKLIVMTYLCQIRAFCTGQELQLVQLEGSGGPGTYRVGNAQPSLPDGLDAGDLAQRLREHGAEAPTEPKEAVNRGAGAVPKVASRDSGLGCASKDGEAEAAQEAVPPEAPSDGPRARSSTSPVAPTEGLVNGVGVPGGVSGVRLRRSSVSGEAGPVPPPRAHGSFSHVRDADLLKKRRSRLRNSNSFSVDDPDSGAAVGAGAAGAGAVEGPNPDSSLDSGPRTAPGPQQPSGGNPPPEEPPPSPGEEAGLQRFQDTSQYVCAELQALEQEQRQIDGRAAEVEKQLRSLMETGANRLQEEVLIEEWFTLVNKKNALIRRQDQLQLLIEEQDLERRFDLLSRELRAMLAIEEWQKTVAQQHREQLLLEELVSLVNQRDELVRDLDQKERIALEEDERLERGLEQRRRKVSRQLSRRERCMLS", "length": 938, "header": "tr|A0A9J7FRB7-1|A0A9J7JDV6_CRIGR Computationally mapped isoform of EH domain-binding protein 1-like protein 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100772499 PE=4 SV=1 CANONICAL=A0A9J7JDV6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FRC1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDV6/entry#A0A9J7FRC1-1", "sequence": { "sequence": "MTSVWKRLQRVGKRAAKFQFVACYHELVLECTKKWQPDKLVVVWTRRNRRICSKAHSWQPGIQNPYRGTVVWMVPENVDISVTLYRDPHVDQYEAKEWTFIIENESKGQRKILATVDVDLAGHAGPVPAQVPLRLRLKPKSVKVVHAELSLTLSGVLLREGRATDDDMQSLASLMSVKPSDVGNLDDFAESDEDEANGPGAPEVRARGPQSDLSRELKTLCEEDEGHKGPQQAAARSCSAEEASPAPASAPAPPARASRGQGSEPAAIAGGQVGPETPRPPQSPPETGSTRQPDQDMVPTPAPRLRKGSDVSRSPVPYRGEEDPNTSEDPPTGAQEAESGVLGTVKGKEADESLEEASLTKAQVASGAGTGVPRPLGASSPEEPEEDRRLLGSQAPSALVSSSQSLLEWCQEVTRGYRGVCITNFTTSWRNGLAFCAILHRFYPDKIDYLSLDPLNIKQNNKQAFDGFAALGVSRLLEPADMVLLSVPDKLIVMTYLCQIRAFCTGQELQLVQLEGSGGPGTYRVGNAQPSLPDGLDAGDLAQRLREHGAEAPTEPKEAVNRGAGAVPKVASRDSGLGCASKDGEAEAAQEAVPPEAPSDGPRARSSTSPVAPTEGLVNGVGVPGGVSGVRLRRSSVSGEAGPVPPPRAHGSFSHVRDADLLKKRRSRLRNSNSFSVDDPDSGAAVGAGAAGAGAVEGPNPDSSLDSGPRTAPGPQQPSGGNPPPEEPPPSPGEEAGLQRFQDTSQYVCAELQALEQEQRQIDGRAAEVEKQLRSLMETGANRLQEEVLIEEWFTLVNKKNALIRRQDQLQLLIEEQDLERRFDLLSRELRAMLAIEEWQKTVAQQHREQLLLEELVSLVNQRDELVRDLDQKERIALEEDERLERGLEQRRRKVSRQLSRRERCMLS", "length": 908, "header": "tr|A0A9J7FRC1-1|A0A9J7JDV6_CRIGR Computationally mapped isoform of EH domain-binding protein 1-like protein 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100772499 PE=4 SV=1 CANONICAL=A0A9J7JDV6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FSF5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDV6/entry#A0A9J7FSF5-1", "sequence": { "sequence": "MTSVWKRLQRVGKRAAKFQFVACYHELVLECTKKWQPDKLVVVWTRRNRRICSKAHSWQPGIQNPYRGTVVWMVPENVDISVTLYRDPHVDQYEAKEWTFIIENESKGQRKILATVDVDLAGHAGPVPAQVPLRLRLKPKSVKVVHAELSLTLSGVLLREGRATDDDMQSLASLMSVKPSDVGNLDDFAESDEDEANGPGAPEVRARGPQSDLSRELKTLCEEDEGHKGPQQAAARSCSAEEASPAPASAPAPPARASRGQGSEPAAIAGGQVGPETPRPPQSPPETGSTRQPDQDMVPTPAPRLRKGSDVSRSPVPYRGEEDPNTSEDPPTGVGSSGETQVQISSQGEAEASGTEPETDTEGRGSRDALGRERSEAEEGDTGDRPKASGSGSREKNTKEPCLTAGEAEESSKLPQVDAEQRSKAQEAESGVLGTVKGKEADESLEEASLTKAQVASGAGTGVPRPLGASSPEEPEEDRRLLGSQAPSALVSSSQSLLEWCQEVTRGYRGVCITNFTTSWRNGLAFCAILHRFYPDKIDYLSLDPLNIKQNNKQAFDGFAALGVSRLLEPADMVLLSVPDKLIVMTYLCQIRAFCTGQELQLVQLEGSGGPGTYRVGNAQPSLPDGLDAGDLAQRLREHGAEAPTEPKEAVNRGAGAVPKVASRDSGLGCASKDGEAEAAQEAVPPEAPSDGPRARSSTSPVAPTEGLVNGVGVPGGVSGVRLRRSSVSGEAGPVPPPRAHGSFSHVRDADLLKKRRSRLRNSNSFSVDDPDSGAAVGAGAAGAGAVEGPNPDSSLDSGPRTAPGPQQPSGGNPPPEEPPPSPGEEAGLQRFQDTSQYVCAELQALEQEQRQIDGRAAEVEKQLRSLMETGANRLQEEVLIEEWFTLVNKKNALIRRQDQLQLLIEEQDLERRFDLLSRELRAMLAIEEWQKTVAQQHREQLLLEELVSLVNQRDELVRDLDQKERIALEEDERLERGLEQRRRKVSRQLSRRERCMLS", "length": 999, "header": "tr|A0A9J7FSF5-1|A0A9J7JDV6_CRIGR Computationally mapped isoform of EH domain-binding protein 1-like protein 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100772499 PE=4 SV=1 CANONICAL=A0A9J7JDV6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FT46-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDV6/entry#A0A9J7FT46-1", "sequence": { "sequence": "MTSVWKRLQRVGKRAAKFQFVACYHELVLECTKKWQPDKLVVVWTRRNRRICSKAHSWQPGIQNPYRGTVVWMVPENVDISVTLYRDPHVDQYEAKEWTFIIENESKGQRKILATVDVDLAGHAGPVPAQVPLRLRLKPKSVKVVHAELSLTLSGVLLREGRATDDDMQSLASLMSVKPSDVGNLDDFAESDEDEANGPGAPEVRARGPQSDLSRELKTLCEEDEGHKGPQQAAARSCSAEEASPAPASAPAPPARASRGQGSEPAAIAGGQVGPETPRPPQSPPETGSTRQPDQDMVPTPAPRLRKGSDVSRSPVPYRGEEDPNTSEDPPTGAPSALVSSSQSLLEWCQEVTRGYRGVCITNFTTSWRNGLAFCAILHRFYPDKIDYLSLDPLNIKQNNKQAFDGFAALGVSRLLEPADMVLLSVPDKLIVMTYLCQIRAFCTGQELQLVQLEGSGGPGTYRVGNAQPSLPDGLDAGDLAQRLREHGAEAPTEPKEAVNRGAGAVPKVASRDSGLGCASKDGEAEAAQEAVPPEAPSDGPRARSSTSPVAPTEGLVNGVGVPGGVSGVRLRRSSVSGEAGPVPPPRAHGSFSHVRDADLLKKRRSRLRNSNSFSVDDPDSGAAVGAGAAGAGAVEGPNPDSSLDSGPRTAPGPQQPSGGNPPPEEPPPSPGEEAGLQRFQDTSQYVCAELQALEQEQRQIDGRAAEVEKQLRSLMETGANRLQEEVLIEEWFTLVNKKNALIRRQDQLQLLIEEQDLERRFDLLSRELRAMLAIEEWQKTVAQQHREQLLLEELVSLVNQRDELVRDLDQKERIALEEDERLERGLEQRRRKVSRQLSRRERCMLS", "length": 847, "header": "tr|A0A9J7FT46-1|A0A9J7JDV6_CRIGR Computationally mapped isoform of EH domain-binding protein 1-like protein 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100772499 PE=4 SV=1 CANONICAL=A0A9J7JDV6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JDV6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDV6/entry#A0A9J7JDV6-1", "sequence": { "sequence": "MTSVWKRLQRVGKRAAKFQFVACYHELVLECTKKWQPDKLVVVWTRRNRRICSKAHSWQPGIQNPYRGTVVWMVPENVDISVTLYRDPHVDQYEAKEWTFIIENESKGQRKILATVDVDLAGHAGPVPAQVPLRLRLKPKSVKVVHAELSLTLSGVLLREGRATDDDMQSLASLMSVKPSDVGNLDDFAESDEDEANGPGAPEVRARGPQSDLSRELKTLCEEDEGHKGPQQAAARSCSAEEASPAPASAPAPPARASRGQGSEPAAIAGGQVGPETPRPPQSPPETGSTRQPDQDMVPTPAPRLRKGSDVSRSPVPYRGEEDPNTSEDPPTGVGSSGETQVQISSQGEAEASGTEPETDTEGRGSRDALGRERSEAEEGDTGDRPKASGSGSREKNTKEPCLTAGEAEESSKLPQVDAEQRSKVHVAVEGPEAAGLVPKARLWEPPEAPPRSAQRRMGVTTQEEAPSDPNQSPAEPEGHVGPLRGAMPAGQERESMEVRGRAPVSERTGLEQGPSAGAASAGAQGSGFHKVPSVGQEAKVGESRVLETETEWVPGKVIGMLNTDVGRPESPEIETGTAESEVLEAQGSEAARSEVLEPEATGTAQSEVLRNQDKEIGVLGMLRTGAEIRESEEFGIKKIVGDFTVPGTKTVTETEILEAQEVADGGAGILKVEEVEILGTPKTVAGEAEAGILETQKIAAEGSEAPKVGTEMAKSDILGMQETEVGAWSIPRTGTEATVTEILGTHRIAFEGSGCPQIQSRIVETQETEVGGSEVSVTDTVEDVILQSHGVLWVEAEKPESKIEGSLEIKEGDFRILEVDTGPVEAKILEAPKIAAGVFEVPGIGTEGARALETKAGSSEVPETEAKEAEILEVKELSGGSVALRIVAEITESKMLGAQKTEVEDPELSQTEVRGAEAKVLGTQKIASEGAGVPGMEAKMEESEVSMAQETEMEIWEVPEVETVDAELFGTQKAEIGLETPELETETITSEILEAQETEVRESGLLGTESEVAEVVVPETQKIEAEVARAQEIEAGDSVISRPEAGTAKAEVLRAQWTETVVLESEEAKTDTLGVQEPGAWGTLKYEALSVAVAKQRFSGAEGIASEVSRVQETESKVLGIVEAKSWTVELQEAEREGFESPENKSDIFEAQEAESGVLGTVKGKEADESLEEASLTKAQVASGAGTGVPRPLGASSPEEPEEDRRLLGSQAPSALVSSSQSLLEWCQEVTRGYRGVCITNFTTSWRNGLAFCAILHRFYPDKIDYLSLDPLNIKQNNKQAFDGFAALGVSRLLEPADMVLLSVPDKLIVMTYLCQIRAFCTGQELQLVQLEGSGGPGTYRVGNAQPSLPDGLDAGDLAQRLREHGAEAPTEPKEAVNRGAGAVPKVASRDSGLGCASKDGEAEAAQEAVPPEAPSDGPRARSSTSPVAPTEGLVNGVGVPGGVSGVRLRRSSVSGEAGPVPPPRAHGSFSHVRDADLLKKRRSRLRNSNSFSVDDPDSGAAVGAGAAGAGAVEGPNPDSSLDSGPRTAPGPQQPSGGNPPPEEPPPSPGEEAGLQRFQDTSQYVCAELQALEQEQRQIDGRAAEVEKQLRSLMETGANRLQEEVLIEEWFTLVNKKNALIRRQDQLQLLIEEQDLERRFDLLSRELRAMLAIEEWQKTVAQQHREQLLLEELVSLVNQRDELVRDLDQKERIALEEDERLERGLEQRRRKVSRQLSRRERCMLS", "length": 1726, "header": "tr|A0A9J7JDV6-1|A0A9J7JDV6_CRIGR Isoform 1 of EH domain-binding protein 1-like protein 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100772499 PE=4 SV=1 CANONICAL=A0A9J7JDV6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JI27-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDV6/entry#A0A9J7JI27-1", "sequence": { "sequence": "MTSVWKRLQRVGKRAAKFQFVACYHELVLECTKKWQPDKLVVVWTRRNRRICSKAHSWQPGIQNPYRGTVVWMVPENVDISVTLYRDPHVDQYEAKEWTFIIENESKGQRKILATVDVDLAGHAGPVPAQVPLRLRLKPKSVKVVHAELSLTLSGVLLREGRATDDDMQSLASLMSVKPSDVGNLDDFAESDEDEANGPGAPEVRARGPQSDLSRELKTLCEEDEGHKGPQQAAARSCSAEEASPAPASAPAPPARASRGQGSEPAAIAGGQEAESGVLGTVKGKEADESLEEASLTKAQVASGAGTGVPRPLGASSPEEPEEDRRLLGSQAPSALVSSSQSLLEWCQEVTRGYRGVCITNFTTSWRNGLAFCAILHRFYPDKIDYLSLDPLNIKQNNKQAFDGFAALGVSRLLEPADMVLLSVPDKLIVMTYLCQIRAFCTGQELQLVQLEGSGGPGTYRVGNAQPSLPDGLDAGDLAQRLREHGAEAPTEPKEAVNRGAGAVPKVASRDSGLGCASKDGEAEAAQEAVPPEAPSDGPRARSSTSPVAPTEGLVNGVGVPGGVSGVRLRRSSVSGEAGPVPPPRAHGSFSHVRDADLLKKRRSRLRNSNSFSVDDPDSGAAVGAGAAGAGAVEGPNPDSSLDSGPRTAPGPQQPSGGNPPPEEPPPSPGEEAGLQRFQDTSQYVCAELQALEQEQRQIDGRAAEVEKQLRSLMETGANRLQEEVLIEEWFTLVNKKNALIRRQDQLQLLIEEQDLERRFDLLSRELRAMLAIEEWQKTVAQQHREQLLLEELVSLVNQRDELVRDLDQKERIALEEDERLERGLEQRRRKVSRQLSRRERCMLS", "length": 845, "header": "tr|A0A9J7JI27-1|A0A9J7JI27_CRIGR Computationally mapped isoform of EH domain-binding protein 1-like protein 1 isoform X16 OS=Cricetulus griseus OX=10029 GN=LOC100772499 PE=4 SV=1 CANONICAL=A0A9J7JDV6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JK21-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDV6/entry#A0A9J7JK21-1", "sequence": { "sequence": "MTSVWKRLQRVGKRAAKFQFVACYHELVLECTKKWQPDKLVVVWTRRNRRICSKAHSWQPGIQNPYRGTVVWMVPENVDISVTLYRDPHVDQYEAKEWTFIIENESKGQRKILATVDVDLAGHAGPVPAQVPLRLRLKPKSVKVVHAELSLTLSGVLLREGRATDDDMQSLASLMSVKPSDVGNLDDFAESDEDEANGPGAPEVRARGPQSDLSRELKTLCEEDEGHKGPQQAAARSCSAEEASPAPASAPAPPARASRGQGSEPAAIAGGQVGPETPRPPQSPPETGSTRQPDQDMVPTPAPRLRKGSDVSRSPVPYRGEEDPNTSEDPPTGVGSSGETQVQISSQGEAEASGTEPETDTEGRGSRDALGRERSEAEEGDTGDRPKASGSGSREKNTKEPCLTAGEAEESSKLPQVDAEQRSKVHVAVEGPEAAGLVPKARLWEPPEAPPRSAQRRMGVTTQEEAPSDPNQSPAEPEGHVGPLRGAMPAGQERESMEVRGRAPVSERTGLEQGPSAGAASAGAQGSGFHKVPSVGQEAKVGESRVLETETEWVPGKVIGMLNTDVGRPESPEIETGTAESEVLEAQGSEAARSEVLEPEATGTAQSEVLRNQDKEIGVLGMLRTGAEIRESEEFGIKKIVGDFTVPGTKTVTETEILEAQEVADGGAGILKVEEVEILGTPKTVAGEAEAGILETQKIAAEGSEAPKVGTEMAKSDILGMQETEVGAWSIPRTGTEATVTEILGTHRIAFEGSGCPQIQSRIVETQETEVGGSEVSVTDTVEDVILQSHGVLWVEAEKPESKIEGSLEIKEGDFRILEVDTGPVEAKILEAPKIAAGVFEVPGIGTEGARALETKAGSSEVPETEAKEAEILEVKELSGGSVALRIVAEITESKMLGAQKTEVEDPELSQTEVRGAEAKVLGTQKIASEGAGVPGMEAKMEESEVSMAQETEMEIWEVPEVETVDAELFGTQKAEIGLETPELETETITSEILEAQETEVRESGLLGTESEVAEVVVPETQKIEAEVARAQEIEAGDSVISRPEAGTAKAEVLRAQWTETVVLESEEAKTDTLGVQEPGAWGTLKYEALSVAVAKQRFSGAEGIASEVSRVQETESKVLGIVEAKSWTVELQEAEREGFESPENKSDIFEAQEAESGVLGTVKGKEADESLEEASLTKAQVASGAGTGVPRPLGASSPEEPEEDRRLLGSQAPSALVSSSQSLLEWCQEVTRGYRGVCITNFTTSWRNGLAFCAILHRFYPDKIDYLSLDPLNIKQNNKQAFDGFAALGVSRLLEPADMVLLSVPDKLIVMTYLCQIRAFCTGQELQLVQLEGSGGPGTYRVGNAQPSLPDGLDAGDLAQRLREHGAEAPTEPKEAVNRGAGAVPKVASRDSGLGCASKDGEAEAAQEAVPPEAPSDGPRARSSTSPVAPTEGLVNGVGVPGGVSGVRLRRSSVSGEAGPVPPPRAHGSFSHVRDADLLKKRRSRLRNSNSFSVDDPDSGAAVGAGAAGAGAVEGPNPDSSLDSGPRTAPGPQQPSGGNPPPEEPPPSPGEEAGLQRFQDTSQYVCAELQALEQEQRQIDGRAAEVEKQLRSLMETAALHRQEAALVTALA", "length": 1612, "header": "tr|A0A9J7JK21-1|A0A9J7JDV6_CRIGR Computationally mapped isoform of EH domain-binding protein 1-like protein 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100772499 PE=4 SV=1 CANONICAL=A0A9J7JDV6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JKQ4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDV6/entry#A0A9J7JKQ4-1", "sequence": { "sequence": "MVPENVDISVTLYRDPHVDQYEAKEWTFIIENESKGQRKILATVDVDLAGHAGPVPAQVPLRLRLKPKSVKVVHAELSLTLSGVLLREGRATDDDMQSLASLMSVKPSDVGNLDDFAESDEDEANGPGAPEVRARGPQSDLSRELKTLCEEDEGHKGPQQAAARSCSAEEASPAPASAPAPPARASRGQGSEPAAIAGGQVGPETPRPPQSPPETGSTRQPDQDMVPTPAPRLRKGSDVSRSPVPYRGEEDPNTSEDPPTGVGSSGETQVQISSQGEAEASGTEPETDTEGRGSRDALGRERSEAEEGDTGDRPKASGSGSREKNTKEPCLTAGEAEESSKLPQVDAEQRSKVHVAVEGPEAAGLVPKARLWEPPEAPPRSAQRRMGVTTQEEAPSDPNQSPAEPEGHVGPLRGAMPAGQERESMEVRGRAPVSERTGLEQGPSAGAASAGAQGSGFHKVPSVGQEAKVGESRVLETETEWVPGKVIGMLNTDVGRPESPEIETGTAESEVLEAQGSEAARSEVLEPEATGTAQSEVLRNQDKEIGVLGMLRTGAEIRESEEFGIKKIVGDFTVPGTKTVTETEILEAQEVADGGAGILKVEEVEILGTPKTVAGEAEAGILETQKIAAEGSEAPKVGTEMAKSDILGMQETEVGAWSIPRTGTEATVTEILGTHRIAFEGSGCPQIQSRIVETQETEVGGSEVSVTDTVEDVILQSHGVLWVEAEKPESKIEGSLEIKEGDFRILEVDTGPVEAKILEAPKIAAGVFEVPGIGTEGARALETKAGSSEVPETEAKEAEILEVKELSGGSVALRIVAEITESKMLGAQKTEVEDPELSQTEVRGAEAKVLGTQKIASEGAGVPGMEAKMEESEVSMAQETEMEIWEVPEVETVDAELFGTQKAEIGLETPELETETITSEILEAQETEVRESGLLGTESEVAEVVVPETQKIEAEVARAQEIEAGDSVISRPEAGTAKAEVLRAQWTETVVLESEEAKTDTLGVQEPGAWGTLKYEALSVAVAKQRFSGAEGIASEVSRVQETESKVLGIVEAKSWTVELQEAEREGFESPENKSDIFEAQEAESGVLGTVKGKEADESLEEASLTKAQVASGAGTGVPRPLGASSPEEPEEDRRLLGSQAPSALVSSSQSLLEWCQEVTRGYRGVCITNFTTSWRNGLAFCAILHRFYPDKIDYLSLDPLNIKQNNKQAFDGFAALGVSRLLEPADMVLLSVPDKLIVMTYLCQIRAFCTGQELQLVQLEGSGGPGTYRVGNAQPSLPDGLDAGDLAQRLREHGAEAPTEPKEAVNRGAGAVPKVASRDSGLGCASKDGEAEAAQEAVPPEAPSDGPRARSSTSPVAPTEGLVNGVGVPGGVSGVRLRRSSVSGEAGPVPPPRAHGSFSHVRDADLLKKRRSRLRNSNSFSVDDPDSGAAVGAGAAGAGAVEGPNPDSSLDSGPRTAPGPQQPSGGNPPPEEPPPSPGEEAGLQRFQDTSQYVCAELQALEQEQRQIDGRAAEVEKQLRSLMETGANRLQEEVLIEEWFTLVNKKNALIRRQDQLQLLIEEQDLERRFDLLSRELRAMLAIEEWQKTVAQQHREQLLLEELVSLVNQRDELVRDLDQKERIALEEDERLERGLEQRRRKVSRQLSRRERCMLS", "length": 1654, "header": "tr|A0A9J7JKQ4-1|A0A9J7JDV6_CRIGR Computationally mapped isoform of EH domain-binding protein 1-like protein 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100772499 PE=4 SV=1 CANONICAL=A0A9J7JDV6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JLL9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDV6/entry#A0A9J7JLL9-1", "sequence": { "sequence": "MTSVWKRLQRVGKRAAKFQFVACYHELVLECTKKWQPDKLVVVWTRRNRRICSKAHSWQPGIQNPYRGTVVWMVPENVDISVTLYRDPHVDQYEAKEWTFIIENESKGQRKILATVDVDLAGHAGPVPAQVPLRLRLKPKSVKVVHAELSLTLSGVLLREGRATDDDMQSLASLMSVKPSDVGNLDDFAESDEDEANGPGAPEVRARGPQSDLSRELKTLCEEDEGHKGPQQAAARSCSAEEASPAPASAPAPPARASRGQGSEPAAIAGGQVGPETPRPPQSPPETGSTRQPDQDMVPTPAPRLRKGSDVSRSPVPYRGEEDPNTSEDPPTGVGSSGETQVQISSQGEAEASGTEPETDTEGRGSRDALGRERSEAEEGDTGDRPKASGSGSREKNTKEPCLTAGEAEESSKLPQVDAEQRSKEAESGVLGTVKGKEADESLEEASLTKAQVASGAGTGVPRPLGASSPEEPEEDRRLLGSQAPSALVSSSQSLLEWCQEVTRGYRGVCITNFTTSWRNGLAFCAILHRFYPDKIDYLSLDPLNIKQNNKQAFDGFAALGVSRLLEPADMVLLSVPDKLIVMTYLCQIRAFCTGQELQLVQLEGSGGPGTYRVGNAQPSLPDGLDAGDLAQRLREHGAEAPTEPKEAVNRGAGAVPKVASRDSGLGCASKDGEAEAAQEAVPPEAPSDGPRARSSTSPVAPTEGLVNGVGVPGGVSGVRLRRSSVSGEAGPVPPPRAHGSFSHVRDADLLKKRRSRLRNSNSFSVDDPDSGAAVGAGAAGAGAVEGPNPDSSLDSGPRTAPGPQQPSGGNPPPEEPPPSPGEEAGLQRFQDTSQYVCAELQALEQEQRQIDGRAAEVEKQLRSLMETGANRLQEEVLIEEWFTLVNKKNALIRRQDQLQLLIEEQDLERRFDLLSRELRAMLAIEEWQKTVAQQHREQLLLEELVSLVNQRDELVRDLDQKERIALEEDERLERGLEQRRRKVSRQLSRRERCMLS", "length": 997, "header": "tr|A0A9J7JLL9-1|A0A9J7JDV6_CRIGR Computationally mapped isoform of EH domain-binding protein 1-like protein 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100772499 PE=4 SV=1 CANONICAL=A0A9J7JDV6-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1372, "start_aa": "Thr", "end_pos": 1372, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1372", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1432, "start_aa": "Thr", "end_pos": 1432, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1432", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 300, "start_aa": "Thr", "end_pos": 300, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr300", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FMX3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMX3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FMX3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FMX3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100772499", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772499", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "endosome", "id": "GO:0005768", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005768", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JDV6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDV6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 104, "end_pos": 106, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1145, "end_pos": 1147, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1242, "end_pos": 1244, "annotation": "n_glycosylation_sequon" }, { "start_pos": 325, "end_pos": 327, "annotation": "n_glycosylation_sequon" }, { "start_pos": 471, "end_pos": 473, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JDV6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDV6" }, { "id": "PS51848", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51848" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BMERB", "eco_id": "ECO_0000259", "start_pos": 1552, "end_pos": 1704, "start_aa": "Glu", "end_aa": "Arg", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7JDV6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDV6" }, { "id": "PS51840", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51840" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2 NT-type", "eco_id": "ECO_0000259", "start_pos": 8, "end_pos": 157, "start_aa": "Leu", "end_aa": "Leu", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7JDV6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDV6" }, { "id": "PS50021", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50021" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Calponin-homology (CH)", "eco_id": "ECO_0000259", "start_pos": 1218, "end_pos": 1323, "start_aa": "Val", "end_aa": "Thr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 300, 1372, 1432 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 104, "end_pos": 106 }, { "start_pos": 1145, "end_pos": 1147 }, { "start_pos": 1242, "end_pos": 1244 }, { "start_pos": 325, "end_pos": 327 }, { "start_pos": 471, "end_pos": 473 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_o_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": 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"total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_o_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7J5A3-1", "uniprot_ac": "A0A9J7J5A3", "uniprot_id": "A0A9J7J5A3_CRIGR", "mass": { "chemical_mass": 43023.0, "monoisotopic_mass": 43023.0 }, "refseq": { "ac": "XP_003498701", "name": "cathepsin K isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003498701" }, "gene_names": [ { "name": "Ctsk", "type": "recommended", "evidence": [ { "id": "A0A9J7J5A3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J5A3" } ] }, { "name": "Ctsk", "type": "synonym", "evidence": [ { "id": "XP_003498701", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003498701" } ] } ], "protein_names": [ { "name": "Cathepsin K isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7J5A3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J5A3/entry#names_and_taxonomy" } ] }, { "name": "cathepsin K isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003498701", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003498701" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613699.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 27, 2016 this sequence version replaced XP_003498701.2. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003498701", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003498701" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J5A3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J5A3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ctsk", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J5A3", "locus": {} } ], "crossref": [ { "id": "A0A9J7J5A3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7J5A3", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd02248", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02248", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100765407", "url": "https://www.ncbi.nlm.nih.gov/gene/100765407", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000169", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000169", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000668", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000668", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013128", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013128", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013201", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013201", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025660", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025660", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025661", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025661", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038765", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038765", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100765407", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765407", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GTYNKGC", "url": "https://omabrowser.org/oma/group/GTYNKGC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2MNS3", "url": "https://www.orthodb.org/?gene=A0A8C2MNS3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7J5A3", "url": "https://www.orthodb.org/?gene=A0A9J7J5A3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JA40", "url": "https://www.orthodb.org/?gene=A0A9J7JA40", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12411", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12411", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00112", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00112", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08246", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08246", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003498701", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003498701", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MNS3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MNS3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MNS3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MNS3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J5A3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J5A3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J5A3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J5A3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JA40", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JA40", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JA40-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JA40-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVLLVAASEAYTVRTPKAGQYKCLPGNVSAIISTPTGWLRLNLLSMEVSPNYSSHRMWVFKFLLLPMLSFALYPEEMLDTQWELWKKTHRKQYNSKVDEISRRLIWEKNLKHISIHNLEASLGVHTYELAMNHLGDMTSEEVVQKMTGLKLPPSHSHSNDTLYIPEWEGRAPDAIDYRKKGYVTPVKNQGECGSCWAFSSAGALEGQLKKKTGKLLNLSPQNLVDCVSENYGCGGGYMTTAFRYVQTNGGIDSEDAYPYVGQDQSCMYNPTAKAAKCRGYREIPVGSEKALKRAVARVGPISVSIDASLTSFQFYSRGVYYDENCDGDNVNHAVLVVGYGAQKGNKHWIIKNSWGESWGNKGYVLLARNRNNACGITNLASFPKM", "length": 385, "header": "tr|A0A9J7J5A3-1|A0A9J7J5A3_CRIGR Isoform 1 of Cathepsin K isoform X1 OS=Cricetulus griseus OX=10029 GN=Ctsk PE=3 SV=1 CANONICAL=A0A9J7J5A3-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MNS3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J5A3/entry#A0A8C2MNS3-1", "sequence": { "sequence": "MWVFKFLLLPMLSFALYPEEMLDTQWELWKKTHRKQYNSKVDEISRRLIWEKNLKHISIHNLEASLGVHTYELAMNHLGDMTSEEVVQKMTGLKLPPSHSHSNDTLYIPEWEGRAPDAIDYRKKGYVTPVKNQGECGSCWAFSSAGALEGQLKKKTGKLLNLSPQNLVDCVSENYGCGGGYMTTAFRYVQTNGGIDSEDAYPYVGQDQSCMYNPTAKAAKCRGYREIPVGSEKALKRAVARVGPISVSIDASLTSFQFYSRGVYYDENCDGDNVNHAVLVVGYGAQKGNKHWIIKNSWGESWGNKGYVLLARNRNNACGITNLASFPKM", "length": 329, "header": "tr|A0A8C2MNS3-1|A0A9J7J5A3_CRIGR Computationally mapped isoform of Cathepsin K isoform X1 OS=Cricetulus griseus OX=10029 GN=Ctsk PE=3 SV=1 CANONICAL=A0A9J7J5A3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J5A3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J5A3/entry#A0A9J7J5A3-1", "sequence": { "sequence": "MVLLVAASEAYTVRTPKAGQYKCLPGNVSAIISTPTGWLRLNLLSMEVSPNYSSHRMWVFKFLLLPMLSFALYPEEMLDTQWELWKKTHRKQYNSKVDEISRRLIWEKNLKHISIHNLEASLGVHTYELAMNHLGDMTSEEVVQKMTGLKLPPSHSHSNDTLYIPEWEGRAPDAIDYRKKGYVTPVKNQGECGSCWAFSSAGALEGQLKKKTGKLLNLSPQNLVDCVSENYGCGGGYMTTAFRYVQTNGGIDSEDAYPYVGQDQSCMYNPTAKAAKCRGYREIPVGSEKALKRAVARVGPISVSIDASLTSFQFYSRGVYYDENCDGDNVNHAVLVVGYGAQKGNKHWIIKNSWGESWGNKGYVLLARNRNNACGITNLASFPKM", "length": 385, "header": "tr|A0A9J7J5A3-1|A0A9J7J5A3_CRIGR Isoform 1 of Cathepsin K isoform X1 OS=Cricetulus griseus OX=10029 GN=Ctsk PE=3 SV=1 CANONICAL=A0A9J7J5A3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JA40-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J5A3/entry#A0A9J7JA40-1", "sequence": { "sequence": "MEVSPNYSSHRMWVFKFLLLPMLSFALYPEEMLDTQWELWKKTHRKQYNSKVDEISRRLIWEKNLKHISIHNLEASLGVHTYELAMNHLGDMTSEEVVQKMTGLKLPPSHSHSNDTLYIPEWEGRAPDAIDYRKKGYVTPVKNQGECGSCWAFSSAGALEGQLKKKTGKLLNLSPQNLVDCVSENYGCGGGYMTTAFRYVQTNGGIDSEDAYPYVGQDQSCMYNPTAKAAKCRGYREIPVGSEKALKRAVARVGPISVSIDASLTSFQFYSRGVYYDENCDGDNVNHAVLVVGYGAQKGNKHWIIKNSWGESWGNKGYVLLARNRNNACGITNLASFPKM", "length": 340, "header": "tr|A0A9J7JA40-1|A0A9J7JA40_CRIGR Computationally mapped isoform of Cathepsin K isoform X2 OS=Cricetulus griseus OX=10029 GN=Ctsk PE=3 SV=1 CANONICAL=A0A9J7J5A3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MNS3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MNS3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MNS3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MNS3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100765407", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765407", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q9LNC1-1", "protein_name": "Cysteine proteinases superfamily protein", "gene_name": "", "tax_id": 3702, "organism": "Arabidopsis thaliana", "sequence": { "sequence": "MLNVLRNSNLTLAVLICFVLIASKLCSVDSSVYDPHKTLKQRFEKWLKTHSKLYGGRDEWMLRFGIYQSNVQLIDYINSLHLPFKLTDNRFADMTNSEFKAHFLGLNTSSLRLHKKQRPVCDPAGNVPDAVDWRTQGAVTPIRNQGKCGGCWAFSAVAAIEGINKIKTGNLVSLSEQQLIDCDVGTYNKGCSGGLMETAFEFIKTNGGLATETDYPYTGIEGTCDQEKSKNKVVTIQGYQKVAQNEASLQIAAAQQPVSVGIDAGGFIFQLYSSGVFTNYCGTNLNHGVTVVGYGVEGDQKYWIVKNSWGTGWGEEGYIRMERGVSEDTGKCGIAMMASYPLQ", "length": 343 }, "evidence": [ { "id": "A0A9J7J5A3", "url": "https://omabrowser.org/oma/group/A0A9J7J5A3/", "database": "OMA" } ], "glygen_name": "Arabidopsis", "common_name": "Mouse-ear cress" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J5A3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J5A3" } ], "pmid": "" }, { "name": "lysosome", "id": "GO:0005764", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005764", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J5A3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J5A3" } ], "pmid": "" }, { "name": "external side of plasma membrane", "id": "GO:0009897", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009897", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J5A3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J5A3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 5, "go_terms": [ { "name": "collagen binding", "id": "GO:0005518", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005518", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J5A3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J5A3" } ], "pmid": "" }, { "name": "proteoglycan binding", "id": "GO:0043394", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043394", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J5A3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J5A3" } ], "pmid": "" }, { "name": "fibronectin binding", "id": "GO:0001968", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001968", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J5A3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J5A3" } ], "pmid": "" }, { "name": "cysteine-type endopeptidase activity", "id": "GO:0004197", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004197", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J5A3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J5A3" } ], "pmid": "" }, { "name": "cysteine-type peptidase activity", "id": "GO:0008234", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008234", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J5A3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J5A3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 4, "go_terms": [ { "name": "collagen catabolic process", "id": "GO:0030574", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030574", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J5A3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J5A3" } ], "pmid": "" }, { "name": "proteolysis involved in protein catabolic process", "id": "GO:0051603", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051603", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J5A3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J5A3" } ], "pmid": "" }, { "name": "thyroid hormone generation", "id": "GO:0006590", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006590", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J5A3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J5A3" } ], "pmid": "" }, { "name": "proteolysis", "id": "GO:0006508", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006508", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J5A3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J5A3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 159, "end_pos": 161, "annotation": "n_glycosylation_sequon" }, { "start_pos": 217, "end_pos": 219, "annotation": "n_glycosylation_sequon" }, { "start_pos": 27, 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], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Peptidase C1A papain C-terminal", "eco_id": "ECO_0000259", "start_pos": 171, "end_pos": 384, "start_aa": "Ala", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 159, "end_pos": 161 }, { "start_pos": 217, "end_pos": 219 }, { "start_pos": 27, "end_pos": 29 }, { "start_pos": 51, "end_pos": 53 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { 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"monoisotopic_mass": 111874.0 }, "refseq": { "ac": "XP_027248093", "name": "SLIT-ROBO Rho GTPase-activating protein 1 isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248093" }, "gene_names": [ { "name": "Srgap1", "type": "recommended", "evidence": [ { "id": "A0A9J7J4I0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J4I0" } ] }, { "name": "Srgap1", "type": "synonym", "evidence": [ { "id": "XP_027248093", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248093" } ] } ], "protein_names": [ { "name": "SLIT-ROBO Rho GTPase-activating protein 1 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_027248093", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248093" }, { "id": "A0A9J7J4I0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J4I0/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027248093", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248093" } ] }, { "annotation": "GTPase-activating protein for RhoA and Cdc42 small GTPases. Together with CDC42 seems to be involved in the pathway mediating the repulsive signaling of Robo and Slit proteins in neuronal migration. SLIT2, probably through interaction with ROBO1, increases the interaction of SRGAP1 with ROBO1 and inactivates CDC42.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J975", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J975#function" }, { "database": "UniProtKB", "id": "ARBA00056458", "url": "https://www.uniprot.org/uniprotkb/ARBA00056458#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J4I0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J4I0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Srgap1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J4I0", "locus": {} } ], "crossref": [ { "id": "A0A9J7J4I0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7J4I0", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd04383", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04383", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd07683", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07683", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd11955", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11955", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100755954", "url": "https://www.ncbi.nlm.nih.gov/gene/100755954", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000198", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000198", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001060", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001060", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008936", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008936", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027267", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027267", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031160", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031160", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035648", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035648", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036028", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036028", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037451", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037451", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051627", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051627", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100755954", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755954", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7J4I0", "url": "https://www.orthodb.org/?gene=A0A9J7J4I0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14166", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14166", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00018", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00018", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00611", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00611", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00620", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00620", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027248093", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248093", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7J4I0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J4I0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J4I0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J4I0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J975", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J975", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J975-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J975-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSTPSRFKKDKEIIAEYESQVKEIRAQLVEQQKCLEQQTEMRVQLLQDLQDFFRKKAEIETEYSRNLEKLAERFMAKTRSTKDHQQFKKDQNLLSPVNCWYLLLNQVRRESKDHATLSDIYLNNVIMRFMQISEDSTRMFKKSKEIAFQLHEDLMKVLNELYTVMKTYHMYHAESISAESKLKEAEKQEEKQIGRSGDPVFHIRLEERHQRRSSVKKIEKMKEKRQAKYSENKLKSIKARNEYLLTLEATNASVFKYYIHDLSDLIDCCDLGYHASLNRALRTYLSAEYNLETSRHEGLDIIENAVDNLEPRSDKQRFMEMYPAAFCPPMKFEFQSHMGDEVCQVSAQQPVQAELMLRNQQLQSRLATLKIENEEVKKTTEATLQTIQDMVTIEDYDVSECFQHSRSTESVKSTVSETYLSKPSIAKRRANQQETEHFYFMKLREFLEGSNLITKLQAKHDLLQRTLGEGHRAEYMTTRPPNVPPKPQKHRKSRPRSQYNAKLFNGDLETFVKDSGQVIPLIVESCIRFINLYGLQHQGIFRVSGSQVEVNDIKNSFERGENPLADDQSNHDINSVAGVLKLYFRGLENPLFPKERFNDLISCIRIDNLYERALHIRKLLLTLPRSVLIVMRYLFAFLNHLSQYSDENMMDPYNLAICFGPTLMPVPEIQDQVSCQAHVNEIVKTIIIHHEAIFPDSKELDGPVYEKCMAGGDYCDSPYSEHGTLEEVDQDAGTEPHTSEDECEPIEAIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYIVVQDMDDTFSDTLSQKADSEASSGPVTEDKSSSKDMNSPTDRHSDSYLARQRKRGEPPPPGRRPGRTSDGHCPLHPPHTLSNSSIDLGSPNLASHPRGLLQNRGLNNDSPERRRRPGHGSLTNISRHDSLKKIDSPPIRRSTSSGQYTGFNDHKPLDPETIAQVECFNWDAVF", "length": 970, "header": "tr|A0A9J7J4I0-1|A0A9J7J4I0_CRIGR Isoform 1 of SLIT-ROBO Rho GTPase-activating protein 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Srgap1 PE=4 SV=1 CANONICAL=A0A9J7J4I0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7J4I0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J4I0/entry#A0A9J7J4I0-1", "sequence": { "sequence": "MSTPSRFKKDKEIIAEYESQVKEIRAQLVEQQKCLEQQTEMRVQLLQDLQDFFRKKAEIETEYSRNLEKLAERFMAKTRSTKDHQQFKKDQNLLSPVNCWYLLLNQVRRESKDHATLSDIYLNNVIMRFMQISEDSTRMFKKSKEIAFQLHEDLMKVLNELYTVMKTYHMYHAESISAESKLKEAEKQEEKQIGRSGDPVFHIRLEERHQRRSSVKKIEKMKEKRQAKYSENKLKSIKARNEYLLTLEATNASVFKYYIHDLSDLIDCCDLGYHASLNRALRTYLSAEYNLETSRHEGLDIIENAVDNLEPRSDKQRFMEMYPAAFCPPMKFEFQSHMGDEVCQVSAQQPVQAELMLRNQQLQSRLATLKIENEEVKKTTEATLQTIQDMVTIEDYDVSECFQHSRSTESVKSTVSETYLSKPSIAKRRANQQETEHFYFMKLREFLEGSNLITKLQAKHDLLQRTLGEGHRAEYMTTRPPNVPPKPQKHRKSRPRSQYNAKLFNGDLETFVKDSGQVIPLIVESCIRFINLYGLQHQGIFRVSGSQVEVNDIKNSFERGENPLADDQSNHDINSVAGVLKLYFRGLENPLFPKERFNDLISCIRIDNLYERALHIRKLLLTLPRSVLIVMRYLFAFLNHLSQYSDENMMDPYNLAICFGPTLMPVPEIQDQVSCQAHVNEIVKTIIIHHEAIFPDSKELDGPVYEKCMAGGDYCDSPYSEHGTLEEVDQDAGTEPHTSEDECEPIEAIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYIVVQDMDDTFSDTLSQKADSEASSGPVTEDKSSSKDMNSPTDRHSDSYLARQRKRGEPPPPGRRPGRTSDGHCPLHPPHTLSNSSIDLGSPNLASHPRGLLQNRGLNNDSPERRRRPGHGSLTNISRHDSLKKIDSPPIRRSTSSGQYTGFNDHKPLDPETIAQVECFNWDAVF", "length": 970, "header": "tr|A0A9J7J4I0-1|A0A9J7J4I0_CRIGR Isoform 1 of SLIT-ROBO Rho GTPase-activating protein 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Srgap1 PE=4 SV=1 CANONICAL=A0A9J7J4I0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J975-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J4I0/entry#A0A9J7J975-1", "sequence": { "sequence": "MSTPSRFKKDKEIIAEYESQVKEIRAQLVEQQKCLEQQTEMRVQLLQDLQDFFRKKAEIETEYSRNLEKLAERFMAKTRSTKDHQQFKKDQNLLSPVNCWYLLLNQVRRESKDHATLSDIYLNNVIMRFMQISEDSTRMFKKSKEIAFQLHEDLMKVLNELYTVMKTYHMYHAESISAESKLKEAEKQEEKQIGRSGDPVFHIRLEERHQRRSSVKKIEKMKEKRQAKYSENKLKSIKARNEYLLTLEATNASVFKYYIHDLSDLIDCCDLGYHASLNRALRTYLSAEYNLETSRHEGLDIIENAVDNLEPRSDKQRFMEMYPAAFCPPMKFEFQSHMGDEVCQVSAQQPVQAELMLRNQQLQSRLATLKIENEEVKKTTEATLQTIQDMVTIEDYDVSECFQHSRSTESVKSTVSETYLSKPSIAKRRANQQETEHFYFMKLREFLEGSNLITKLQAKHDLLQRTLGEGHRAEYMTTSRGRRNSHARHQDSGQVIPLIVESCIRFINLYGLQHQGIFRVSGSQVEVNDIKNSFERGENPLADDQSNHDINSVAGVLKLYFRGLENPLFPKERFNDLISCIRIDNLYERALHIRKLLLTLPRSVLIVMRYLFAFLNHLSQYSDENMMDPYNLAICFGPTLMPVPEIQDQVSCQAHVNEIVKTIIIHHEAIFPDSKELDGPVYEKCMAGGDYCDSPYSEHGTLEEVDQDAGTEPHTSEDECEPIEAIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYIVVQDMDDTFSDTLSQKADSEASSGPVTEDKSSSKDMNSPTDRHSDSYLARQRKRGEPPPPGRRPGRTSDGHCPLHPPHTLSNSSIDLGSPNLASHPRGLLQNRGLNNDSPERRRRPGHGSLTNISRHDSLKKIDSPPIRRSTSSGQYTGFNDHKPLDPETIAQVECFNWDAVF", "length": 947, "header": "tr|A0A9J7J975-1|A0A9J7J4I0_CRIGR Computationally mapped isoform of SLIT-ROBO Rho GTPase-activating protein 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Srgap1 PE=4 SV=1 CANONICAL=A0A9J7J4I0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J975", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J975" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J975", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J975" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100755954", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755954", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "GTPase activator activity", "id": "GO:0005096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005096", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J4I0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J4I0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J4I0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J4I0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 251, "end_pos": 253, "annotation": "n_glycosylation_sequon" }, { "start_pos": 879, "end_pos": 881, "annotation": "n_glycosylation_sequon" }, { "start_pos": 904, "end_pos": 906, "annotation": "n_glycosylation_sequon" }, { "start_pos": 920, "end_pos": 922, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7J4I0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J4I0" }, { "id": "PS51741", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51741" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "F-BAR", "eco_id": "ECO_0000259", "start_pos": 19, "end_pos": 314, "start_aa": "Ser", "end_aa": "Asp", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7J4I0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J4I0" }, { "id": "PS50238", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50238" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Rho-GAP", "eco_id": "ECO_0000259", "start_pos": 506, "end_pos": 694, "start_aa": "Gly", "end_aa": "Phe", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7J4I0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J4I0" }, { "id": "PS50002", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50002" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "SH3", "eco_id": "ECO_0000259", "start_pos": 743, "end_pos": 802, "start_aa": "Cys", "end_aa": "Met", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 251, "end_pos": 253 }, { "start_pos": 879, "end_pos": 881 }, { "start_pos": 904, "end_pos": 906 }, { "start_pos": 920, "end_pos": 922 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7HES1-1", "uniprot_ac": "A0A9J7HES1", "uniprot_id": "A0A9J7HES1_CRIGR", "mass": { "chemical_mass": 84533.0, "monoisotopic_mass": 84533.0 }, "refseq": { "ac": "XP_035308970", "name": "nidogen-2 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308970" }, "gene_names": [ { "name": "Nid2", "type": "recommended", "evidence": [ { "id": "A0A9J7HES1", "database": "UniProtKB", "url": 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Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035308970", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308970" } ] }, { "annotation": "Cell adhesion glycoprotein. Might be involved in osteoblast differentiation. It probably has a role in cell-extracellular matrix interactions.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HCD4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCD4#function" }, { "database": "UniProtKB", "id": "ARBA00059143", "url": "https://www.uniprot.org/uniprotkb/ARBA00059143#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HES1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HES1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Nid2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HES1", "locus": {} } ], "crossref": [ { "id": "A0A9J7HES1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HES1", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00054", "url": 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"categories": [ "Protein Classification" ] }, { "id": "IPR000742", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000742", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001881", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001881", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003886", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003886", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006605", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006605", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009017", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009017", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009030", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009030", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011042", "url": 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Classification" ] }, { "id": "cge:100769615", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769615", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GKT8", "url": "https://www.orthodb.org/?gene=A0A9J7GKT8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7HCD4", "url": "https://www.orthodb.org/?gene=A0A9J7HCD4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7HES1", "url": "https://www.orthodb.org/?gene=A0A9J7HES1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13802", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13802", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13802:SF65", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13802:SF65", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46513", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46513", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46513:SF15", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46513:SF15", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00058", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00058", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00086", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00086", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF06119", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06119", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07474", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07474", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07645", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07645", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12947", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12947", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035308970", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308970", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GKT8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKT8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GKT8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKT8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HCD4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCD4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HCD4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HCD4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HES1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HES1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HES1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HES1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSRDPAAGRLAPLSLLLLLLLPRVGALRPDELFPYGESWGDQLLPEGDDESSTAVKLAVPLRFYDAQFSDLYVGTNGIISTQDFPRETQYVDDDFPTDFPAIAPFLADIDTSHGRGRILYREDTSLPVLDLAGRYVRKAFPLSGFTPTHAFLATWEHVGAYEEVRRGAAPSRERNTFQVVLASDGSDTYAIFLYPANGLQFLGTRPKESYNVQLQLPARVGFCRGEVDDLKREVPCFSLTNTEQSVKNLYQLSNLGIPGVWAFHIGSRIPLDNVRSGTVGGDFSTARSSAVLEQSFSHAAALESYSEDNLDYYDENEEDLEYPPVEPGDALQGHSRIDVSFNSKADPGPVESGTSSPDPHWASPLPHPGDWPPYRETESAPLNPQTKHGASVGEVEVVNFKNPVNLLDHMGTRTLAPPEADAVFLTPGKENLGNRSTLPNPDAEPELSEPDVPVPPLEEVLPHYPVSGHVPPPSGGRYVVGVKDHVSSNDQVFSYNGANRETCEHSHGQCSQHAFCTDYATGFCCHCQSRFYGNGKHCLPEGAPHRVNGKVSGRLRVGHTFVYFTDVDLHSYIVGNDGRAYTAISHIPQPAAQALLPVIAIGGLFGWLFALEKPGAKNGFSFTGATFVHDVEVTFYPGEERVRITQTAEGLDPENYLSIKTNIEGQVPFIPANFTAHIAPYKELYHYGDSAMTSSSSRSFSLTSGSINQTWSYHIDQNITYKACRHAPRNLAIPTTQQLTVDRVFALYREDEGVLRFAVTNQIGPVEEST", "length": 770, "header": "tr|A0A9J7HES1-1|A0A9J7HES1_CRIGR Isoform 1 of Nidogen-2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Nid2 PE=4 SV=1 CANONICAL=A0A9J7HES1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GKT8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HES1/entry#A0A9J7GKT8-1", "sequence": { "sequence": "PIGALGGLAVRTRGPGWRSAGSAARRDALTQGLSQGEASISRDPAAGRLAPLSLLLLLLLLLLLLLLPRVGALRPDELFPYGESWGDQLLPEGDDESSAAVKLAVPLRFYDAQFSDLYVGTNGIISTQDFPRETQYVDDDFPTDFPAIAPFLADIDTSHGRGRILYREDTSLPVLDLAARYVRKAFPLSGFTPTHAFLATWEHVGAYEEVRRGAAPSREETVFCSLTGDSTNWGSAPGLGLGNV", "length": 244, "header": "tr|A0A9J7GKT8-1|A0A9J7HES1_CRIGR Computationally mapped isoform of Nidogen-2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Nid2 PE=4 SV=1 CANONICAL=A0A9J7HES1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HCD4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HES1/entry#A0A9J7HCD4-1", "sequence": { "sequence": "MTLEYVKWTKSNQHKLSDQSHSVPSSVSHTYTVDSAPAPVNPCYDGSHTCDTTARCRPGTGVDYTCECAPGFHGDGRSCADVNECATGFHHCGPNSVCINMPGSYKCGCRSGYEFADDQHTCILIAPPSNPCLDGSHTCAPEGQAECIHHGGSSFSCACLPGFVGTGHQCFDVDECVENRCHEAATCYNTPGSFSCRCQPGFHGDGFHCTSDSVSGLKPCEYQQRYAQAQHAHPGSRIHIPQCDDQGNFVSLQCHGSTGFCWCVDQNGHEVPGTQTPPGSTPPHCGPPSEPTQRPRTVCERWRESLLEHYGGTPRDDQYVPQCDDLGRFIPLQCHGNSDFCWCVDKDGRELKGTRSKPGTKPACIPTVAPPTVRPTPRPDVTPPSVGTFLLYAQGQQIGHLPLNGSRLQKDAAKTLLSLHGSIVVGIDYDCLERMVYWTDVAGRTISRASLEAGAEPETIIMSGLISPEGLAIDHFRRTMYWTDSGLDKIERSGLDGSERKVLFHTDLVNPRAITVDPIRGNLYWTDWNREAPKIEASSLDGENRRILINKDIGLPNGLTFDPFSKLLCWADAGTKKLECTLPDGTGRRVIQNHLNYPFSIVSYADHFYHTDWRRDGVISVNKDSGQFIDEYLPEQRSHLYGITVVYPYCPTGRK", "length": 655, "header": "tr|A0A9J7HCD4-1|A0A9J7HCD4_CRIGR Computationally mapped isoform of Nidogen-2 OS=Cricetulus griseus OX=10029 GN=Nid2 PE=4 SV=1 CANONICAL=A0A9J7HES1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HES1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HES1/entry#A0A9J7HES1-1", "sequence": { "sequence": "MSRDPAAGRLAPLSLLLLLLLPRVGALRPDELFPYGESWGDQLLPEGDDESSTAVKLAVPLRFYDAQFSDLYVGTNGIISTQDFPRETQYVDDDFPTDFPAIAPFLADIDTSHGRGRILYREDTSLPVLDLAGRYVRKAFPLSGFTPTHAFLATWEHVGAYEEVRRGAAPSRERNTFQVVLASDGSDTYAIFLYPANGLQFLGTRPKESYNVQLQLPARVGFCRGEVDDLKREVPCFSLTNTEQSVKNLYQLSNLGIPGVWAFHIGSRIPLDNVRSGTVGGDFSTARSSAVLEQSFSHAAALESYSEDNLDYYDENEEDLEYPPVEPGDALQGHSRIDVSFNSKADPGPVESGTSSPDPHWASPLPHPGDWPPYRETESAPLNPQTKHGASVGEVEVVNFKNPVNLLDHMGTRTLAPPEADAVFLTPGKENLGNRSTLPNPDAEPELSEPDVPVPPLEEVLPHYPVSGHVPPPSGGRYVVGVKDHVSSNDQVFSYNGANRETCEHSHGQCSQHAFCTDYATGFCCHCQSRFYGNGKHCLPEGAPHRVNGKVSGRLRVGHTFVYFTDVDLHSYIVGNDGRAYTAISHIPQPAAQALLPVIAIGGLFGWLFALEKPGAKNGFSFTGATFVHDVEVTFYPGEERVRITQTAEGLDPENYLSIKTNIEGQVPFIPANFTAHIAPYKELYHYGDSAMTSSSSRSFSLTSGSINQTWSYHIDQNITYKACRHAPRNLAIPTTQQLTVDRVFALYREDEGVLRFAVTNQIGPVEEST", "length": 770, "header": "tr|A0A9J7HES1-1|A0A9J7HES1_CRIGR Isoform 1 of Nidogen-2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Nid2 PE=4 SV=1 CANONICAL=A0A9J7HES1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HES1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HES1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HES1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HES1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100769615", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769615", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "cell-matrix adhesion", "id": "GO:0007160", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007160", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HES1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HES1" } ], "pmid": "" }, { "name": "cell adhesion", "id": "GO:0007155", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007155", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HES1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HES1" } ], "pmid": "" }, { "name": "canonical Wnt signaling pathway", "id": "GO:0060070", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0060070", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HES1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HES1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HES1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HES1" } ], "pmid": "" }, { "name": "basement membrane", "id": "GO:0005604", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005604", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HES1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HES1" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HES1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HES1" } ], "pmid": "" }, { "name": "Wnt-protein binding", "id": "GO:0017147", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0017147", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HES1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HES1" } ], "pmid": "" }, { "name": "Wnt receptor activity", "id": "GO:0042813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0042813", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HES1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HES1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 434, "end_pos": 436, "annotation": "n_glycosylation_sequon" }, { "start_pos": 673, "end_pos": 675, "annotation": "n_glycosylation_sequon" }, { "start_pos": 708, "end_pos": 710, "annotation": "n_glycosylation_sequon" }, { "start_pos": 718, "end_pos": 720, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7HES1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HES1" }, { "id": "PS51220", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51220" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "NIDO", "eco_id": "ECO_0000259", "start_pos": 104, "end_pos": 268, "start_aa": "Pro", "end_aa": "Arg", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7HES1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HES1" }, { "id": "PS50993", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50993" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Nidogen G2 beta-barrel", "eco_id": "ECO_0000259", "start_pos": 543, "end_pos": 770, "start_aa": "Ala", "end_aa": "Thr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 434, "end_pos": 436 }, { "start_pos": 673, "end_pos": 675 }, { "start_pos": 708, "end_pos": 710 }, { "start_pos": 718, "end_pos": 720 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7HER4-1", "uniprot_ac": "A0A9J7HER4", "uniprot_id": "A0A9J7HER4_CRIGR", "mass": { "chemical_mass": 42718.0, "monoisotopic_mass": 42718.0 }, "refseq": { "ac": "XP_035309550", "name": "zinc finger protein 431-like isoform X4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309550" }, "gene_names": [ { "name": "LOC100752592", "type": "recommended", "evidence": [ { "id": "A0A9J7HER4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HER4" } ] }, { "name": "LOC100752592", "type": "synonym", "evidence": [ { "id": "XP_035309550", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309550" } ] } ], "protein_names": [ { "name": "Zinc finger protein 431-like isoform X4", "type": "synonym", "evidence": [ { "id": "A0A9J7HER4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HER4/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 431-like isoform X4", "type": "synonym", "evidence": [ { "id": "XP_035309550", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309550" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276808.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035309550", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309550" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HER4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HER4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100752592", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HER4", "locus": {} } ], "crossref": [ { "id": "A0A9J7HER4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HER4", "database": "AlphaFoldDB", "categories": [] }, { "id": "100752592", "url": "https://www.ncbi.nlm.nih.gov/gene/100752592", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100752592", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752592", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7GKV4", "url": "https://www.orthodb.org/?gene=A0A9J7GKV4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7HER4", "url": "https://www.orthodb.org/?gene=A0A9J7HER4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14003", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14003", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14003:SF23", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14003:SF23", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24394", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24394", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24394:SF48", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24394:SF48", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24399", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24399", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24399:SF71", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24399:SF71", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13465", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13465", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13894", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13894", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035309550", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309550", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GKV4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKV4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GKV4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GKV4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HER4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HER4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HER4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HER4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HF73", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HF73", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HF73-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HF73-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDTSQKNLYKDVMLETYRNLNDIGYNWEDNSIEEHCASCKRHERHEGRQTAQKPSVYTQCHKAYACYSHLQRHKRSHSGEKPYECNLCGKPFANYSHLKTHLRTHTGEKPYECNQCGKAFARQSTLQIHKRTHTGEKPYECNQCGKAFAQQSTLQMHKRTHTGEKPYECNQCDKAFSHQGSLHVHERTHTGEKPYECSQCGKAFARYSQLHVHERTHTGEKPYECNQCGKTFACYSQLQMHKRTHTREKPYECNQCGKAFSNQSTLNVHKRTHTGEKPYECNECGKAFSHHGNLQIHKRRHTGEKPYECNQCGKAFSHHSNLQIHKRRHTGEKPYECNQCGKAFSHHGSLQKHKRRHTGEKPYECI", "length": 366, "header": "tr|A0A9J7HER4-1|A0A9J7HER4_CRIGR Isoform 1 of Zinc finger protein 431-like isoform X4 OS=Cricetulus griseus OX=10029 GN=LOC100752592 PE=4 SV=1 CANONICAL=A0A9J7HER4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GKV4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HER4/entry#A0A9J7GKV4-1", "sequence": { "sequence": 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"url": "https://www.uniprot.org/uniprotkb/A0A9J7HER4" } ], "pmid": "" }, { "name": "chromatin", "id": "GO:0000785", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000785", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HER4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HER4" } ], "pmid": "" }, { "name": "PcG protein complex", "id": "GO:0031519", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031519", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HER4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HER4" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HER4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HER4" } ], "pmid": "" }, { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HER4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HER4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 262, "end_pos": 264, "annotation": "n_glycosylation_sequon" }, { "start_pos": 94, "end_pos": 96, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7HER4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HER4" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 58, "end_pos": 82, "start_aa": "Thr", "end_aa": "Pro", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7HER4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HER4" }, { "id": "PS50805", "database": "PROSITE", "url": 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Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027254791", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027254791" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JDN8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDN8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "CUNH1orf232", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDN8", "locus": {} } ], "crossref": [ { "id": "A0A9J7JDN8", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JDN8", "database": "AlphaFoldDB", "categories": [] }, { "id": "113833828", "url": "https://www.ncbi.nlm.nih.gov/gene/113833828", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:113833828", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113833828", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JDN8", "url": "https://www.orthodb.org/?gene=A0A9J7JDN8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR35663", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35663", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR35663:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35663:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_027254791", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027254791", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GNP6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GNP6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GNP6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GNP6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JDN8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDN8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JDN8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDN8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNQAFWKAYKSKVLQTLGGESEEDLAEERENPALVESETAEPQEEAFNPMSQLARRVQGVGVKGWLTMSSLFNKEDEDKLLPPEPCADHPLAAPPSARAAAAETEPRGPGFWDAFASRWQQQQQAAASMLRGVESTAEPDPDPRDKSAEEAAECPETREVDPAAGFKWGFLTHKLAEMRVKAAPKGD", "length": 187, "header": "tr|A0A9J7JDN8-1|A0A9J7JDN8_CRIGR Isoform 1 of Uncharacterized protein C1orf232 homolog isoform X4 OS=Cricetulus griseus OX=10029 GN=CUNH1orf232 PE=4 SV=1 CANONICAL=A0A9J7JDN8-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GNP6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDN8/entry#A0A9J7GNP6-1", "sequence": { "sequence": "MLQLGSLWKFQCRYELDFRENPALVESETAEPQEEAFNPMSQLARRVQGVGVKGWLTMSSLFNKEDEDKLLPPEPCADHPLAAPPSARAAAAETEPRGPGFWDAFASRWQQQQQAAASMLRGVESTAEPDPDPRDKSAEEAAECPETREVDPAAGFKWGFLTHKLAEMRVKAAPKGD", "length": 177, "header": "tr|A0A9J7GNP6-1|A0A9J7JDN8_CRIGR Computationally mapped isoform of Uncharacterized protein C1orf232 homolog isoform X4 OS=Cricetulus griseus OX=10029 GN=CUNH1orf232 PE=4 SV=1 CANONICAL=A0A9J7JDN8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JDN8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDN8/entry#A0A9J7JDN8-1", "sequence": { "sequence": "MNQAFWKAYKSKVLQTLGGESEEDLAEERENPALVESETAEPQEEAFNPMSQLARRVQGVGVKGWLTMSSLFNKEDEDKLLPPEPCADHPLAAPPSARAAAAETEPRGPGFWDAFASRWQQQQQAAASMLRGVESTAEPDPDPRDKSAEEAAECPETREVDPAAGFKWGFLTHKLAEMRVKAAPKGD", "length": 187, "header": "tr|A0A9J7JDN8-1|A0A9J7JDN8_CRIGR Isoform 1 of Uncharacterized protein C1orf232 homolog isoform X4 OS=Cricetulus griseus OX=10029 GN=CUNH1orf232 PE=4 SV=1 CANONICAL=A0A9J7JDN8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GNP6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GNP6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NW_003613778.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007639080", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007639080" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JCI4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCI4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100769667", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCI4", "locus": {} } ], "crossref": [ { "id": "A0A9J7JCI4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JCI4", "database": "AlphaFoldDB", "categories": [] }, { "id": "100769667", "url": "https://www.ncbi.nlm.nih.gov/gene/100769667", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:100769667", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769667", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YGSHAIS", "url": "https://omabrowser.org/oma/group/YGSHAIS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JCI4", "url": "https://www.orthodb.org/?gene=A0A9J7JCI4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "XP_007639080", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007639080", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GQ99", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GQ99", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GQ99-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GQ99-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JCI4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCI4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JCI4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCI4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAKCLVKIRTQRSLHLHMVNHCSSNVFVRLLKHGSKVIPRNAGAPLPKTDASEPLTVSSPVKRAGGADALSEEEEQVKEDSLTISELAYNPSASLLPTPEDDEEIDMLFDCPSRFELDREDTDSFEELEADENAFLMAEEEELKEARQAFSWSYSILTGRIWLNPMVKRCSRLLVVGLGLLLFVFPLILLLLESGIYLSFLCKNRI", "length": 206, "header": "tr|A0A9J7JCI4-1|A0A9J7JCI4_CRIGR Isoform 1 of FERM domain-containing protein 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100769667 PE=4 SV=1 CANONICAL=A0A9J7JCI4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GQ99-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCI4/entry#A0A9J7GQ99-1", "sequence": { "sequence": "MAKCLVKIRTQRSLHLHMVNHCSSNVFVRLLKHGSKVIPRNAGAPLPKTDASEPLTVSSPVKRAGGADALSEEEEQVKEDSLTISELAYNPSASLLPTPEDDEEIDMLFDCPSRFELDREDTDSFEELEADENAFLMAEEEELKEARQAFSWSYSILTGRIWLNPMVKRCSRLLVVGLGLLLFVFPLILLLLESVPVSMP", "length": 200, "header": "tr|A0A9J7GQ99-1|A0A9J7JCI4_CRIGR Computationally mapped isoform of FERM domain-containing protein 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100769667 PE=4 SV=1 CANONICAL=A0A9J7JCI4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JCI4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCI4/entry#A0A9J7JCI4-1", "sequence": { "sequence": "MAKCLVKIRTQRSLHLHMVNHCSSNVFVRLLKHGSKVIPRNAGAPLPKTDASEPLTVSSPVKRAGGADALSEEEEQVKEDSLTISELAYNPSASLLPTPEDDEEIDMLFDCPSRFELDREDTDSFEELEADENAFLMAEEEELKEARQAFSWSYSILTGRIWLNPMVKRCSRLLVVGLGLLLFVFPLILLLLESGIYLSFLCKNRI", "length": 206, "header": "tr|A0A9J7JCI4-1|A0A9J7JCI4_CRIGR Isoform 1 of FERM domain-containing protein 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100769667 PE=4 SV=1 CANONICAL=A0A9J7JCI4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GQ99", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GQ99" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GQ99", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GQ99" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100769667", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769667", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7J9Q0-1", "uniprot_ac": "A0A9J7J9Q0", "uniprot_id": "A0A9J7J9Q0_CRIGR", "mass": { "chemical_mass": 72535.0, "monoisotopic_mass": 72535.0 }, "refseq": { "ac": "XP_027257205", "name": "uncharacterized protein C5orf34 homolog isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257205" }, "gene_names": [ { "name": "C2H5orf34", "type": "recommended", "evidence": [ { "id": "A0A9J7J9Q0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9Q0" } ] }, { "name": "C2H5orf34", "type": "synonym", "evidence": [ { "id": "XP_027257205", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257205" } ] } ], "protein_names": [ { "name": "Uncharacterized protein C5orf34 homolog isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7J9Q0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9Q0/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein C5orf34 homolog isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027257205", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257205" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027257205", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257205" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J9Q0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9Q0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "C2H5orf34", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9Q0", "locus": {} } ], "crossref": [ { "id": "100761661", "url": "https://www.ncbi.nlm.nih.gov/gene/100761661", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR027830", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027830", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027865", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027865", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053899", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053899", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053900", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053900", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR053901", "url": "https://www.ebi.ac.uk/interpro/entry/IPR053901", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100761661", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761661", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7J9Q0", "url": "https://www.orthodb.org/?gene=A0A9J7J9Q0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR34531", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34531", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34531:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34531:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15016", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15016", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF15025", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15025", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22833", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22833", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22834", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22834", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027257205", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257205", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GRM7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GRM7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GRM7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GRM7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J9Q0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9Q0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J9Q0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9Q0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAEVRMVLYEDDSVQVQYADGSTLQLSPCGSEFLFERAPHLSTHPLQQPERIRQRTHFVISTYREQVQRALDFRNSSATCPFLSESLIPPERKKHIFIDFSEVKWPSLDRYDSITYSESGTVKITSLDGHAYLCLPRSQREFTVHFLCKVSQKPDSSVILSETNNRVPKDKLVGKTSKICTCGSLSGQRLKNKEDELRYQILKSKEASANICCVHGAEGREELPSPSTKHRCVYTWVKQCWSIASCPEQWKYPLSLALRFYNQVSIVSEIDADFPASGIVTSDTPEESGKEVSVLPRALLLSCPAPHMHRWNFCDSLLPRQSDEEEYSYPELVKVVWSKGITFRLTHKNVNSIEIYPGDGSIFKSEGTYFGSYFTYYSSQEESEKREEKTYSVNNLPPDRPGSLLSVRSLIKQATRILQHCAKTRLSLSHNYHVCCWKMVSGVNVNNNLPVLLKESLIPSVGRFLAYSDDKVHAVFLDGVTLTLNWNFSSSAEKRQVNEGLNLGWCRLTFPDGQDQLIQTERPGAYDRYVTAVTSWCRRLTQTSPRQAPKHLSPVHKENWSVASELEKIQKFNWLLENSGVLHWTSSKKNEQCSDDCTSESSETSIEVTNKESVSVALKRTSEILQDIDCLLSNSRK", "length": 638, "header": "tr|A0A9J7J9Q0-1|A0A9J7J9Q0_CRIGR Isoform 1 of Uncharacterized protein C5orf34 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=C2H5orf34 PE=4 SV=1 CANONICAL=A0A9J7J9Q0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GRM7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9Q0/entry#A0A9J7GRM7-1", "sequence": { "sequence": "MAAEVRMVLYEDDSVQVQYADGSTLQLSPCGSEFLFERAPHLSTHPLQQPERIRQRTHFVISTYREQVQRALDFRNSSATCPFLSESLIPPERKKHIFIDFSEVKWPSLDRYDSITYSESGTVKITSLDGHAYLCLPRSQREFTVHFLCKVSQKPDSSVILSETNNRVPKDKLVGKTSKICTCGSLSGQRLKNKEDELRYQILKSKEASANICCVHGAEGREELPSPSTKHRCVYTWVKQCWSIASCPEQWKYPLSLALRFYNQVSIVSEIDADFPASGIVTSDTPEESGKEVSVLPRALLLSCPAPHMHRWNFCDSLLPRQSDEEEYSYPELVKVVWSKGITFRLTHKNVNSIEIYPGDGSIFKSEGTYFGSYFTYYSSQEESEKREEKTYSVNNLPPDRPGSLLSVRSLIKQATRILQHCAKTRLSLSHNYHVCCWKMVSGVNVNNNLPVLLKESLIPSVGRFLAYSDDKVHAVFLDGVTLTLNWNFSSSAEKRQVNEGLNLGWCRLTFPDGQDQLIQTERPGAYDRYVTAVTSWCRRLTQTSPRQAPKHLSPVHKENCKCLVYIKLKEGYYC", "length": 575, "header": "tr|A0A9J7GRM7-1|A0A9J7J9Q0_CRIGR Computationally mapped isoform of Uncharacterized protein C5orf34 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=C2H5orf34 PE=4 SV=1 CANONICAL=A0A9J7J9Q0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J9Q0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9Q0/entry#A0A9J7J9Q0-1", "sequence": { "sequence": "MAAEVRMVLYEDDSVQVQYADGSTLQLSPCGSEFLFERAPHLSTHPLQQPERIRQRTHFVISTYREQVQRALDFRNSSATCPFLSESLIPPERKKHIFIDFSEVKWPSLDRYDSITYSESGTVKITSLDGHAYLCLPRSQREFTVHFLCKVSQKPDSSVILSETNNRVPKDKLVGKTSKICTCGSLSGQRLKNKEDELRYQILKSKEASANICCVHGAEGREELPSPSTKHRCVYTWVKQCWSIASCPEQWKYPLSLALRFYNQVSIVSEIDADFPASGIVTSDTPEESGKEVSVLPRALLLSCPAPHMHRWNFCDSLLPRQSDEEEYSYPELVKVVWSKGITFRLTHKNVNSIEIYPGDGSIFKSEGTYFGSYFTYYSSQEESEKREEKTYSVNNLPPDRPGSLLSVRSLIKQATRILQHCAKTRLSLSHNYHVCCWKMVSGVNVNNNLPVLLKESLIPSVGRFLAYSDDKVHAVFLDGVTLTLNWNFSSSAEKRQVNEGLNLGWCRLTFPDGQDQLIQTERPGAYDRYVTAVTSWCRRLTQTSPRQAPKHLSPVHKENWSVASELEKIQKFNWLLENSGVLHWTSSKKNEQCSDDCTSESSETSIEVTNKESVSVALKRTSEILQDIDCLLSNSRK", "length": 638, "header": "tr|A0A9J7J9Q0-1|A0A9J7J9Q0_CRIGR Isoform 1 of Uncharacterized protein C5orf34 homolog isoform X1 OS=Cricetulus griseus OX=10029 GN=C2H5orf34 PE=4 SV=1 CANONICAL=A0A9J7J9Q0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GRM7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GRM7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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"total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7J9X7-1", "uniprot_ac": "A0A9J7J9X7", "uniprot_id": "A0A9J7J9X7_CRIGR", "mass": { "chemical_mass": 165731.0, "monoisotopic_mass": 165731.0 }, "refseq": { "ac": "XP_007640484", "name": "DENN domain-containing protein 4B isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007640484" }, "gene_names": [ { "name": "Dennd4b", "type": "recommended", "evidence": [ { "id": "A0A9J7J9X7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9X7" } ] }, { "name": "Dennd4b", "type": "synonym", "evidence": [ { "id": "XP_007640484", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007640484" } ] } ], "protein_names": [ { "name": "DENN domain-containing protein 4B isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007640484", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007640484" }, { "id": "A0A9J7J9X7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9X7/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613854.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007640484", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007640484" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J9X7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9X7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Dennd4b", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9X7", "locus": {} } ], "crossref": [ { "id": "100767268", "url": "https://www.ncbi.nlm.nih.gov/gene/100767268", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001194", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001194", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002885", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002885", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005112", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005112", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005113", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005113", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023341", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023341", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037516", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037516", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043153", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043153", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051696", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051696", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100767268", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767268", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7J9X7", "url": "https://www.orthodb.org/?gene=A0A9J7J9X7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12296", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12296", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12296:SF18", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12296:SF18", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02141", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02141", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03455", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03455", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03456", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03456", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF10240", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10240", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007640484", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007640484", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HBE0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBE0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HBE0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HBE0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J9X7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9X7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J9X7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9X7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KE92", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KE92", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KE92-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KE92-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEADAVSEGGAMADERPPRLVDYFVVAGLAGNGAPIPEETWVPEPTGPLRPPRPAEPITDVAVIARALGEEVPQGYTCIQTSAGGHPLELSAGLLGGTQPVICYRRGRDKPPLVELGVLYEGKERPKPGFQVLDTTPYSHSANLAPPGPGHPRTYLMYRRAAEGAGLHALGITDLCLVLPSKGEGTPHTYCRLPRNLNPGMWGPAVYLCYKVGLAKANTLVYEAELLGRYPEEDNEAFPLPESVPVFCLPMGATIECWPAQTKYPVPVFSTFVLTGAAGDKVYGAALQFYEAFPRARLSERQARALGLLSAVERGRALGGRAVRSRRAIAVLSRWPAFPAFRAFLTFLYRYSVSGPHRLPLEAHISHFIHNVPFPSPQRPRILVQMSPYDNLLLCQPVSSPLPLSGASFLQLLQNLGPELSITLLLAVLTEHKLLVHSLRPDLLTSVCEALVSMIFPLHWQCPYIPLCPLVLADVLSAPVPFIVGIHSSYFDLHDPPADVICVDLDTNTLFQTEEKKPLSARTLPRRPYKLLLATLTNLYQQLDQTYTGPEEEASLEFLLTDYEAVCGRRTRLEREVQGAFLRFMACLLKGYRDFLRPLIQAPSEGSRDVDNLFYLQGFLKSRERSSHKLYSQLLHTQMFSQFIEECSFGSARHAALEFFDSCVDKVHPEQEKPEPTPLVELEELSGSELTVFITPPEEPPVLEGSESTPQYCYDGFPELKAELFESPQEQQGALPVPGPSRSAPSSPAPRRTKQEMKVAQRMAQKSATVPELWARCLLGHCYGLWFLCLPAYVRSAPSRVRALHKAYHVLREMESRKVVLPDEVCYRVLMQLCSHYGQPVLSVRVMLEMRRAGIVPNTITYGYYNKAVLESKWPSGTPGGRLRWAKLRNVVLGAAQFRQPLKDRRQQQVAVHQEPGHSQTEVCLERPSPTRPLQRQTTWAGRSLREPSSPTGRLVKSGSLGSARGTQPTVEAGVAHRAQGAQPTVEAGVAHMIEALGVLEPRGSPVPWQDGSLSDLSLTGEELAPGGSPGGSGSALSAQSTEALEGISGRGPKTSGCQEEVGTPRKGLGARLQQLLTPSRRSSVSRIPPPELPPDLPPAARRSPMDSLLWPRERPGSTASESSASLGSEWDLSESSLSSLSLRRSSERLSDTPGPFQPPSLEILLSSCSLCRACDSLVYDEEIMAGWAPDDSNLNTTCPFCACPFVPLLSVQTLDSRPSAPSPKSALAGASGSKDAPVPGGPGPVLSDRRLCLALDEPQLCNGHMGSASRRVENGAWAYLSPLVLRKELESLVDNEGSEVLALPELPAAHPIIFWNLLWYFQRLRLPSILPGLVLASYDGPSPRQSSQGPSPWLTPDPASVHVRLLWDVLTPDPHSCPPLYVLWRVHSQIPQRVVWPGPVPSCLSLALLESVLRHVGLNEVHKAVGLLLETLGPPPTGLHLQRGIYREILFLTMAALGKDHVDIVAFDKKYKSAFNKLANSMGKEELRQRRAQMPTPKAIDCRKCFGAPLEC", "length": 1513, "header": "tr|A0A9J7J9X7-1|A0A9J7J9X7_CRIGR Isoform 1 of DENN domain-containing protein 4B isoform X1 OS=Cricetulus griseus OX=10029 GN=Dennd4b PE=4 SV=1 CANONICAL=A0A9J7J9X7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HBE0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9X7/entry#A0A9J7HBE0-1", "sequence": { "sequence": "MADERPPRLVDYFVVAGLAGNGAPIPEETWVPEPTGPLRPPRPAEPITDVAVIARALGEEVPQGYTCIQTSAGGHPLELSAGLLGGTQPVICYRRGRDKPPLVELGVLYEGKERPKPGFQVLDTTPYSHSANLAPPGPGHPRTYLMYRRAAEGAGLHALGITDLCLVLPSKGEGTPHTYCRLPRNLNPGMWGPAVYLCYKVGLAKANTLVYEAELLGRYPEEDNEAFPLPESVPVFCLPMGATIECWPAQTKYPVPVFSTFVLTGAAGDKVYGAALQFYEAFPRARLSERQARALGLLSAVERGRALGGRAVRSRRAIAVLSRWPAFPAFRAFLTFLYRYSVSGPHRLPLEAHISHFIHNVPFPSPQRPRILVQMSPYDNLLLCQPVSSPLPLSGASFLQLLQNLGPELSITLLLAVLTEHKLLVHSLRPDLLTSVCEALVSMIFPLHWQCPYIPLCPLVLADVLSAPVPFIVGIHSSYFDLHDPPADVICVDLDTNTLFQTEEKKPLSARTLPRRPYKLLLATLTNLYQQLDQTYTGPEEEASLEFLLTDYEAVCGRRTRLEREVQGAFLRFMACLLKGYRDFLRPLIQAPSEGSRDVDNLFYLQGFLKSRERSSHKLYSQLLHTQMFSQFIEECSFGSARHAALEFFDSCVDKVHPEQEKPEPTPLVELEELSGSELTVFITPPEEPPVLEGSESTPQYCYDGFPELKAELFESPQEQQGALPVPGPSRSAPSSPAPRRTKQEMKVAQRMAQKSATVPELWARCLLGHCYGLWFLCLPAYVRSAPSRVRALHKAYHVLREMESRKVVLPDEVCYRVLMQLCSHYGQPVLSVRVMLEMRRAGIVPNTITYGYYNKAVLESKWPSGTPGGRLRWAKLRNVVLGAAQFRQPLKDRRQQQVAVHQEPGHSQTEVCLERPSPTRPLQRQTTWAGRSLREPSSPTGRLVKSGSLGSARGTQPTVEAGVAHRAQGAQPTVEAGVAHMIEALGVLEPRGSPVPWQDGSLSDLSLTGEELAPGGSPGGSGSALSAQSTEALEGISGRGPKTSGCQEEVGTPRKGLGARLQQLLTPSRRSSVSRIPPPELPPDLPPAARRSPMDSLLWPRERPGSTASESSASLGSEWDLSESSLSSLSLRRSSERLSDTPGPFQPPSLEILLSSCSLCRACDSLVYDEEIMAGWAPDDSNLNTTCPFCACPFVPLLSVQTLDSRPSAPSPKSALAGASGSKDAPVPGGPGPVLSDRRLCLALDEPQLCNGHMGSASRRVENGAWAYLSPLVLRKELESLVDNEGSEVLALPELPAAHPIIFWNLLWYFQRLRLPSILPGLVLASYDGPSPRQSSQGPSPWLTPDPASVHVRLLWDVLTPDPHSCPPLYVLWRVHSQIPQRVVWPGPVPSCLSLALLESVLRHVGLNEVHKAVGLLLETLGPPPTGLHLQRGIYREILFLTMAALGKDHVDIVAFDKKYKSAFNKLANSMGKEELRQRRAQMPTPKAIDCRKCFGAPLEC", "length": 1502, "header": "tr|A0A9J7HBE0-1|A0A9J7J9X7_CRIGR Computationally mapped isoform of DENN domain-containing protein 4B isoform X1 OS=Cricetulus griseus OX=10029 GN=Dennd4b PE=4 SV=1 CANONICAL=A0A9J7J9X7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J9X7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9X7/entry#A0A9J7J9X7-1", "sequence": { "sequence": "MEADAVSEGGAMADERPPRLVDYFVVAGLAGNGAPIPEETWVPEPTGPLRPPRPAEPITDVAVIARALGEEVPQGYTCIQTSAGGHPLELSAGLLGGTQPVICYRRGRDKPPLVELGVLYEGKERPKPGFQVLDTTPYSHSANLAPPGPGHPRTYLMYRRAAEGAGLHALGITDLCLVLPSKGEGTPHTYCRLPRNLNPGMWGPAVYLCYKVGLAKANTLVYEAELLGRYPEEDNEAFPLPESVPVFCLPMGATIECWPAQTKYPVPVFSTFVLTGAAGDKVYGAALQFYEAFPRARLSERQARALGLLSAVERGRALGGRAVRSRRAIAVLSRWPAFPAFRAFLTFLYRYSVSGPHRLPLEAHISHFIHNVPFPSPQRPRILVQMSPYDNLLLCQPVSSPLPLSGASFLQLLQNLGPELSITLLLAVLTEHKLLVHSLRPDLLTSVCEALVSMIFPLHWQCPYIPLCPLVLADVLSAPVPFIVGIHSSYFDLHDPPADVICVDLDTNTLFQTEEKKPLSARTLPRRPYKLLLATLTNLYQQLDQTYTGPEEEASLEFLLTDYEAVCGRRTRLEREVQGAFLRFMACLLKGYRDFLRPLIQAPSEGSRDVDNLFYLQGFLKSRERSSHKLYSQLLHTQMFSQFIEECSFGSARHAALEFFDSCVDKVHPEQEKPEPTPLVELEELSGSELTVFITPPEEPPVLEGSESTPQYCYDGFPELKAELFESPQEQQGALPVPGPSRSAPSSPAPRRTKQEMKVAQRMAQKSATVPELWARCLLGHCYGLWFLCLPAYVRSAPSRVRALHKAYHVLREMESRKVVLPDEVCYRVLMQLCSHYGQPVLSVRVMLEMRRAGIVPNTITYGYYNKAVLESKWPSGTPGGRLRWAKLRNVVLGAAQFRQPLKDRRQQQVAVHQEPGHSQTEVCLERPSPTRPLQRQTTWAGRSLREPSSPTGRLVKSGSLGSARGTQPTVEAGVAHRAQGAQPTVEAGVAHMIEALGVLEPRGSPVPWQDGSLSDLSLTGEELAPGGSPGGSGSALSAQSTEALEGISGRGPKTSGCQEEVGTPRKGLGARLQQLLTPSRRSSVSRIPPPELPPDLPPAARRSPMDSLLWPRERPGSTASESSASLGSEWDLSESSLSSLSLRRSSERLSDTPGPFQPPSLEILLSSCSLCRACDSLVYDEEIMAGWAPDDSNLNTTCPFCACPFVPLLSVQTLDSRPSAPSPKSALAGASGSKDAPVPGGPGPVLSDRRLCLALDEPQLCNGHMGSASRRVENGAWAYLSPLVLRKELESLVDNEGSEVLALPELPAAHPIIFWNLLWYFQRLRLPSILPGLVLASYDGPSPRQSSQGPSPWLTPDPASVHVRLLWDVLTPDPHSCPPLYVLWRVHSQIPQRVVWPGPVPSCLSLALLESVLRHVGLNEVHKAVGLLLETLGPPPTGLHLQRGIYREILFLTMAALGKDHVDIVAFDKKYKSAFNKLANSMGKEELRQRRAQMPTPKAIDCRKCFGAPLEC", "length": 1513, "header": "tr|A0A9J7J9X7-1|A0A9J7J9X7_CRIGR Isoform 1 of DENN domain-containing protein 4B isoform X1 OS=Cricetulus griseus OX=10029 GN=Dennd4b PE=4 SV=1 CANONICAL=A0A9J7J9X7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KE92-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9X7/entry#A0A9J7KE92-1", "sequence": { "sequence": "MEADAVSEGGAMADERPPRLVDYFVVAGLAGNGAPIPEETWVPEPTGPLRPPRPAEPITDVAVIARALGEEVPQGYTCIQTSAGGHPLELSAGLLGGTQPVICYRRGRDKPPLVELGVLYEGKERPKPGFQVLDTTPYSHSANLAPPGPGHPRTYLMYRRAAEGAGLHALGITDLCLVLPSKGEGTPHTYCRLPRNLNPGMWGPAVYLCYKVGLAKANTLVYEAELLGRYPEEDNEAFPLPESVPVFCLPMGATIECWPAQTKYPVPVFSTFVLTGAAGDKVYGAALQFYEAFPRARLSERQARALGLLSAVERGRALGGRAVRSRRAIAVLSRWPAFPAFRAFLTFLYRYSVSGPHRLPLEAHISHFIHNVPFPSPQRPRILVQMSPYDNLLLCQPVSSPLPLSGASFLQLLQNLGPELSITLLLAVLTEHKLLVHSLRPDLLTSVCEALVSMIFPLHWQCPYIPLCPLVLADVLSAPVPFIVGIHSSYFDLHDPPADVICVDLDTNTLFQTEEKKPLSARTLPRRPYKLLLATLTNLYQQLDQTYTGPEEEASLEFLLTDYEAVCGRRTRLEREVQGAFLRFMACLLKGYRDFLRPLIQAPSEGSRDVDNLFYLQGFLKSRERSSHKLYSQLLHTQMFSQFIEECSFGSARHAALEFFDSCVDKVHPEQEKPEPTPLVELEELSGSELTVFITPPEEPPVLEGSESTPQYCYDGFPELKAELFESPQEQQGALPVPGPSRSAPSSPAPRRTKQEMKVAQRMAQKSATVPELWARCLLGHCYGLWFLCLPAYVRSAPSRVRALHKAYHVLREMESRKVVLPDEVCYRVLMQLCSHYGQPVLSVRVMLEMRRAGIVPNTITYGYYNKAVLESKWPSGTPGGRLRWAKLRNVVLGAAQFRQPLKDRRQQQVAVHQEPGHSQTVIEALGVLEPRGSPVPWQDGSLSDLSLTGEELAPGGSPGGSGSALSAQSTEALEGISGRGPKTSGCQEEVGTPRKGLGARLQQLLTPSRRSSVSRIPPPELPPDLPPAARRSPMDSLLWPRERPGSTASESSASLGSEWDLSESSLSSLSLRRSSERLSDTPGPFQPPSLEILLSSCSLCRACDSLVYDEEIMAGWAPDDSNLNTTCPFCACPFVPLLSVQTLDSRPSAPSPKSALAGASGSKDAPVPGGPGPVLSDRRLCLALDEPQLCNGHMGSASRRVENGAWAYLSPLVLRKELESLVDNEGSEVLALPELPAAHPIIFWNLLWYFQRLRLPSILPGLVLASYDGPSPRQSSQGPSPWLTPDPASVHVRLLWDVLTPDPHSCPPLYVLWRVHSQIPQRVVWPGPVPSCLSLALLESVLRHVGLNEVHKAVGLLLETLGPPPTGLHLQRGIYREILFLTMAALGKDHVDIVAFDKKYKSAFNKLANSMGKEELRQRRAQMPTPKAIDCRKCFGAPLEC", "length": 1442, "header": "tr|A0A9J7KE92-1|A0A9J7J9X7_CRIGR Computationally mapped isoform of DENN domain-containing protein 4B isoform X1 OS=Cricetulus griseus OX=10029 GN=Dennd4b PE=4 SV=1 CANONICAL=A0A9J7J9X7-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 878, "start_aa": "Thr", "end_pos": 878, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr878", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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}, { "name": "putative ankyrin repeat domain-containing protein 20A5", "type": "synonym", "evidence": [ { "id": "XP_035309686", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309686" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 100% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "uniprot_canonical_ac": "A0A9J7HDI9-1", "uniprot_ac": "A0A9J7HDI9", "uniprot_id": "A0A9J7HDI9_CRIGR", "mass": { "chemical_mass": 67811.0, "monoisotopic_mass": 67811.0 }, "refseq": { "ac": "XP_035309719", "name": "zinc finger protein 431-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309719" }, "gene_names": [ { "name": "LOC113837944", "type": "recommended", "evidence": [ { "id": "A0A9J7HDI9", "database": "UniProtKB", "url": 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Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 9% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023277075.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035309719", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309719" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HDI9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDI9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113837944", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDI9", "locus": {} } ], "crossref": [ { "id": "A0A9J7HDI9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HDI9", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein 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This record is derived from a genomic sequence (NW_023277106.1) annotated using gene prediction method: Gnomon. 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computational analysis. This record is derived from a genomic sequence (NW_023277197.1) annotated using gene prediction method: Gnomon. 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], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 372, "end_pos": 374, "annotation": "n_glycosylation_sequon" }, { "start_pos": 376, "end_pos": 378, "annotation": "n_glycosylation_sequon" }, { "start_pos": 550, "end_pos": 552, "annotation": "n_glycosylation_sequon" }, { "start_pos": 94, "end_pos": 96, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7HDM4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDM4" }, { "id": "PS50259", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50259" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 3 profile", "eco_id": "ECO_0000259", "start_pos": 587, "end_pos": 851, "start_aa": "Leu", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 372, "end_pos": 374 }, { "start_pos": 376, "end_pos": 378 }, { "start_pos": 550, "end_pos": 552 }, { "start_pos": 94, "end_pos": 96 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "uniprot_canonical_ac": "A0A9J7HDQ1-1", "uniprot_ac": "A0A9J7HDQ1", "uniprot_id": "A0A9J7HDQ1_CRIGR", "mass": { "chemical_mass": 52092.0, "monoisotopic_mass": 52092.0 }, "refseq": { "ac": "XP_035308942", "name": "ras association domain-containing protein 6", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308942" }, "gene_names": [ { "name": "Rassf6", "type": "recommended", "evidence": [ { "id": "A0A9J7HDQ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDQ1" } ] }, { "name": "Rassf6", "type": "synonym", "evidence": [ { "id": "XP_035308942", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308942" } ] } ], "protein_names": [ { "name": "Ras association domain-containing protein 6", "type": "synonym", "evidence": [ { "id": "A0A9J7HDQ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDQ1/entry#names_and_taxonomy" } ] }, { "name": "ras association domain-containing protein 6", "type": "synonym", "evidence": [ { "id": "XP_035308942", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308942" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 23% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035308942", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308942" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HDQ1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDQ1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Rassf6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDQ1", "locus": {} } ], "crossref": [ { "id": "A0A9J7HDQ1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HDQ1", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd17223", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17223", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd21895", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21895", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100759358", "url": "https://www.ncbi.nlm.nih.gov/gene/100759358", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000159", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000159", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011524", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011524", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029071", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029071", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033614", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033614", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR049787", "url": "https://www.ebi.ac.uk/interpro/entry/IPR049787", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100759358", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759358", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HDQ1", "url": "https://www.orthodb.org/?gene=A0A9J7HDQ1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22738", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22738", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22738:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22738:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00788", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00788", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16517", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16517", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035308942", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308942", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HDQ1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDQ1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HDQ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDQ1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKKSQTERLINVSKTKRRVLAAIVYLQHGWLAKIMQPDFADKGAQNRDAGHLRLRAARPQESPLPSVTIAGELGGGGGKPHSLHSLLRGCGGWGESRPAESGIHSQGGASSDHLGKGGRITMMDHQYPSWIFVNERTFITREQLNSLLEAYNVFYENQKNLHILYGQTEDGQLIVEGMLDIFWGVKRPIQLKIQDEKQISSFDLLKSTETFSSKGGMTRWGEFDDLYRISELDRSQVLLSEGRHSSEDYLSYHSTLKPYADEEPSSPLLYRTMSEAALVRKRMKAPVTYRKDRQDHRASINGHFYNHETSIFTPTFGSETKVRTNSNMRTEEVIKQLLQKFKIENSPQDFALYIIFGTGEQRKLKKTDIPLLQRLLQGPSNSNARIFLMDKDTEEISSDVAQYINFQFSFLESILQRLDEEEKRETERIMAKFNTERAFILKCLQSKQAAKTETTV", "length": 456, "header": "tr|A0A9J7HDQ1-1|A0A9J7HDQ1_CRIGR Isoform 1 of Ras association domain-containing protein 6 OS=Cricetulus griseus OX=10029 GN=Rassf6 PE=4 SV=1 CANONICAL=A0A9J7HDQ1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HDQ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDQ1/entry#A0A9J7HDQ1-1", "sequence": { "sequence": "MKKSQTERLINVSKTKRRVLAAIVYLQHGWLAKIMQPDFADKGAQNRDAGHLRLRAARPQESPLPSVTIAGELGGGGGKPHSLHSLLRGCGGWGESRPAESGIHSQGGASSDHLGKGGRITMMDHQYPSWIFVNERTFITREQLNSLLEAYNVFYENQKNLHILYGQTEDGQLIVEGMLDIFWGVKRPIQLKIQDEKQISSFDLLKSTETFSSKGGMTRWGEFDDLYRISELDRSQVLLSEGRHSSEDYLSYHSTLKPYADEEPSSPLLYRTMSEAALVRKRMKAPVTYRKDRQDHRASINGHFYNHETSIFTPTFGSETKVRTNSNMRTEEVIKQLLQKFKIENSPQDFALYIIFGTGEQRKLKKTDIPLLQRLLQGPSNSNARIFLMDKDTEEISSDVAQYINFQFSFLESILQRLDEEEKRETERIMAKFNTERAFILKCLQSKQAAKTETTV", "length": 456, "header": "tr|A0A9J7HDQ1-1|A0A9J7HDQ1_CRIGR Isoform 1 of Ras association domain-containing protein 6 OS=Cricetulus griseus OX=10029 GN=Rassf6 PE=4 SV=1 CANONICAL=A0A9J7HDQ1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HDQ1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDQ1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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"categories": [ "Protein Classification" ] }, { "id": "IPR018980", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018980", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019748", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019748", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019749", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019749", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029071", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029071", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035963", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035963", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036034", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036034", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052074", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052074", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100758229", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758229", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HDR1", "url": "https://www.orthodb.org/?gene=A0A9J7HDR1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46900", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46900", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46900:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46900:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00373", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00373", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00595", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00595", 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"MSAASVTLASALQVRGEALSEEEIWSLLSLAAERLLEDLRNDSSDYVVCPWSLLLSASGSLSFQDHVSHIEAAPFKAPELLQGPNEVEQPEASQPLQLREPMHSLLLAMCEDQPRRRRPLQAVLEACRVHQEEVAVYPAPASLHISRLVGLVLGTISEVERRVVEEGTCERQSRSHFLRSKLHQAGSESPGARASDGLQPQREDSVLLLMMWEHRVAAESVAGWMHHQVLYPSSFLASTFAGVGPCDCEEGLQRDSGPMLLTEAEKSQPATSPRNFLQRKGKFSRPEFILLAGEAPVTLHLPGSIVTKKGKSYLALRDLCVVLLNGQCLEVKCDMESTAGAVFNAVMSFTNLGETTYFGLAYMKGEEFFFLDKDTRLCKVAPEGWREQHPKGSMDTLTLFLRIKFFVSHYGLLRHSLTRHQFYLQLRKDILEERLYCNDETLLQLGVLALQAEFGSYPKEQLERKAYFQIQDYIPARLIERMTAIRVQVEISEMHRLSSAPWGEDAELEFLEVVQQLPEYGVLVHRVFPEKKRPEGKMALGVCAKGIIVYEVKSSRRIATSQFPWRETGMISTHRRKFTITSSITGKKYTFVTDSAKTCKYLLGLCSAQHWFNAQMGSEQPPHLLSDRDKFVQIANLNSAHQTQANPLTWIQKLSCSENELCVPRLPDATGGRLSTSMENVQGGKEIKMEGIRSSPYCGREQPDSISSSQKSTRHLSGAVVQSTGFVINEGEDVDQAKPGIFISSLIPGGPAEKAKMIKPGGKILALNHISLEGFTFNMAVRMIQNSPDNIELIISQSKGRVFHNASGASPNISITLASRSLSLLDATVLTPLSEAAKDWRIPGKPRVFSSHCKAKGRYQKQEKKVQKVSSATFPWASTCRPRSEGASNSEERLTPRLTIPGNALADRPRDGPLLAAGYCPSFPLEAKVGEIYFVDLVKEDGTLGFSVTGGINTSVPHGGIFVKSIIPGGPAAKEGQILQGKGYVLLAVLLSVVSIPR", "length": 998, "header": "tr|A0A9J7HDR1-1|A0A9J7HDR1_CRIGR Isoform 1 of FERM and PDZ domain-containing protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100758229 PE=4 SV=1 CANONICAL=A0A9J7HDR1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HDR1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDR1/entry#A0A9J7HDR1-1", "sequence": { "sequence": "MSAASVTLASALQVRGEALSEEEIWSLLSLAAERLLEDLRNDSSDYVVCPWSLLLSASGSLSFQDHVSHIEAAPFKAPELLQGPNEVEQPEASQPLQLREPMHSLLLAMCEDQPRRRRPLQAVLEACRVHQEEVAVYPAPASLHISRLVGLVLGTISEVERRVVEEGTCERQSRSHFLRSKLHQAGSESPGARASDGLQPQREDSVLLLMMWEHRVAAESVAGWMHHQVLYPSSFLASTFAGVGPCDCEEGLQRDSGPMLLTEAEKSQPATSPRNFLQRKGKFSRPEFILLAGEAPVTLHLPGSIVTKKGKSYLALRDLCVVLLNGQCLEVKCDMESTAGAVFNAVMSFTNLGETTYFGLAYMKGEEFFFLDKDTRLCKVAPEGWREQHPKGSMDTLTLFLRIKFFVSHYGLLRHSLTRHQFYLQLRKDILEERLYCNDETLLQLGVLALQAEFGSYPKEQLERKAYFQIQDYIPARLIERMTAIRVQVEISEMHRLSSAPWGEDAELEFLEVVQQLPEYGVLVHRVFPEKKRPEGKMALGVCAKGIIVYEVKSSRRIATSQFPWRETGMISTHRRKFTITSSITGKKYTFVTDSAKTCKYLLGLCSAQHWFNAQMGSEQPPHLLSDRDKFVQIANLNSAHQTQANPLTWIQKLSCSENELCVPRLPDATGGRLSTSMENVQGGKEIKMEGIRSSPYCGREQPDSISSSQKSTRHLSGAVVQSTGFVINEGEDVDQAKPGIFISSLIPGGPAEKAKMIKPGGKILALNHISLEGFTFNMAVRMIQNSPDNIELIISQSKGRVFHNASGASPNISITLASRSLSLLDATVLTPLSEAAKDWRIPGKPRVFSSHCKAKGRYQKQEKKVQKVSSATFPWASTCRPRSEGASNSEERLTPRLTIPGNALADRPRDGPLLAAGYCPSFPLEAKVGEIYFVDLVKEDGTLGFSVTGGINTSVPHGGIFVKSIIPGGPAAKEGQILQGKGYVLLAVLLSVVSIPR", "length": 998, "header": "tr|A0A9J7HDR1-1|A0A9J7HDR1_CRIGR Isoform 1 of FERM and PDZ domain-containing protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100758229 PE=4 SV=1 CANONICAL=A0A9J7HDR1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HDR1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDR1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HDR1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDR1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100758229", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758229", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 41, "end_pos": 43, "annotation": "n_glycosylation_sequon" }, { "start_pos": 805, "end_pos": 807, "annotation": "n_glycosylation_sequon" }, { "start_pos": 812, "end_pos": 814, "annotation": "n_glycosylation_sequon" }, { "start_pos": 953, "end_pos": 955, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7HDR1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDR1" }, { "id": "PS50057", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50057" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "FERM", "eco_id": "ECO_0000259", "start_pos": 317, "end_pos": 617, "start_aa": "Arg", "end_aa": "Gly", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7HDR1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDR1" }, { "id": "PS51377", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51377" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KIND", "eco_id": "ECO_0000259", "start_pos": 6, "end_pos": 166, "start_aa": "Val", "end_aa": "Glu", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7HDR1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDR1" }, { "id": "PS50106", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50106" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PDZ", "eco_id": "ECO_0000259", "start_pos": 725, "end_pos": 799, "start_aa": "Gly", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 41, "end_pos": 43 }, { "start_pos": 805, "end_pos": 807 }, { "start_pos": 812, "end_pos": 814 }, { "start_pos": 953, "end_pos": 955 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7HDS1-1", "uniprot_ac": "A0A9J7HDS1", "uniprot_id": "A0A9J7HDS1_CRIGR", "mass": { "chemical_mass": 86446.0, "monoisotopic_mass": 86446.0 }, "refseq": { "ac": "XP_035308978", "name": "armadillo-like helical domain-containing protein 4 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308978" }, "gene_names": [ { "name": "LOC100772688", "type": "recommended", "evidence": [ { "id": "A0A9J7HDS1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDS1" } ] }, { "name": "LOC100772688", "type": "synonym", "evidence": [ { "id": "XP_035308978", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308978" } ] } ], "protein_names": [ { "name": "Armadillo-like helical domain-containing protein 4 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7HDS1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDS1/entry#names_and_taxonomy" } ] }, { "name": "armadillo-like helical domain-containing protein 4 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035308978", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308978" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 2% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035308978", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308978" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HDS1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDS1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100772688", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDS1", "locus": {} } ], "crossref": [ { "id": "A0A9J7HDS1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HDS1", "database": "AlphaFoldDB", "categories": [] }, { "id": "100772688", "url": "https://www.ncbi.nlm.nih.gov/gene/100772688", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR031524", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031524", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100772688", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772688", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HDS1", "url": "https://www.orthodb.org/?gene=A0A9J7HDS1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21585", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21585", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21585:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21585:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15767", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15767", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035308978", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308978", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HDS1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDS1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HDS1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDS1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MELIYKIYLHDSVLCFTFPQDSITGTVNSFNLSTMSRSTLLHSSVSLCSILFLTLTTQCLAFQKVEKREIAKSHMETEKSREMSTADQENISFAPKHTPQQMSSEAPMVLSAGSSVMQLNKVTSVNKEHHHPGAELLNPNISDLHSSSEPVVSGSEEGHGPSQLERMSPERRLSKAMSIIAVSSPTSLNPHQEGPHSSSSIQPIREGITDVTHDFLKYVDNQLFITESQEAVSLGNIPLSYRKTKEMLTANPRTEKVQTDASKGMAAIPGVDSTTDTEPAGKRPSEKPGDNSQTTATIHLVATPENILNIDPTADSRLGDLKVTVSVSTAVPFSSVSSDEWDDTKFESVNLTETPDSGDNAETQVSTEPPHEVYESFEGAEGTLTSTKVNTVAPGLPEGETSLGTALIIALKEQRSTVYTHQVPFTPMTPTEEPEVSTMNLFPSAGGFTASTLEDRTTLFSKTMISTSQYETNTHQAVGNVLKDITQEMTMATQEPDPTLPLVTQEHFEVPRGSGEPEGGMPSPSPVSADVDDTELSRRWESLATPAPTTVVPLSLEIASSMEDIMDMITGPNEDFIPVLSSPVTPAEMTVEAPTISPALPPEGRTIPSINHPNTATSYGLEQLESEEVEDEEDEEDEEDEDEEEEGEEEDEADKEADTLYKDFDSDTELPGFTPPGITSQEPDIEPGSMALLEVATYQVPETMEWEQQNQGLVRSWMEKLKDKAGYMSGMLVPVGVGIAGALFILGALYSIKVMNRRRRNGFKRHKGKQREFNSMQDRVMLLADSSEDEF", "length": 791, "header": "tr|A0A9J7HDS1-1|A0A9J7HDS1_CRIGR Isoform 1 of Armadillo-like helical domain-containing protein 4 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100772688 PE=4 SV=1 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"tr|A0A9J7HDS1-1|A0A9J7HDS1_CRIGR Isoform 1 of Armadillo-like helical domain-containing protein 4 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100772688 PE=4 SV=1 CANONICAL=A0A9J7HDS1-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 585, "start_aa": "Thr", "end_pos": 585, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr585", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7HDT9-1", "uniprot_ac": "A0A9J7HDT9", "uniprot_id": "A0A9J7HDT9_CRIGR", "mass": { "chemical_mass": 61409.0, "monoisotopic_mass": 61409.0 }, "refseq": { "ac": "XP_035307744", "name": "collagen alpha-1(XXV) chain isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307744" }, "gene_names": [ { "name": "Col25a1", "type": "recommended", "evidence": [ { "id": "A0A9J7HDT9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDT9" } ] }, { "name": "Col25a1", "type": "synonym", "evidence": [ { "id": "XP_035307744", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307744" } ] } ], "protein_names": [ { "name": "Collagen alpha-1(XXV) chain isoform X3", "type": "synonym", "evidence": [ { "id": "A0A9J7HDT9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDT9/entry#names_and_taxonomy" } ] }, { "name": "collagen alpha-1(XXV) chain isoform X3", "type": "synonym", "evidence": [ { "id": "XP_035307744", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307744" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035307744", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035307744" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HDT9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDT9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Col25a1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDT9", "locus": {} } ], "crossref": [ { "id": "A0A9J7HDT9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HDT9", "database": "AlphaFoldDB", "categories": [] }, { "id": "100758217", "url": "https://www.ncbi.nlm.nih.gov/gene/100758217", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HDT9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HDT9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100758217", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758217", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 249 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], 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"MASDINMPSPVCLIENSKRQLVPNEEALKILSTIDQPMVVVAIVGFYRTGKSYLMNKLAGKQKGFSLGSTVQSHTKGIWMWCVPHPQKPGHTLVLLDTEGLEDVQKGDNQNDCWIFTLAVLLSSTFIYNSTGTINQQAMDQLHYVTELTDLIKSKSSPEQNGVDDSANFIGFFPTFVWALRDFSLELEVDGKPITADEYLEYSLTLMKGSDNKSESFNKPRLCIRTFFPKRKCFVFDRPAQRKYLSKLETISEEDLSSEFVEQVEEFTSYIFSYSNVKTLSGGILVNGPRLQSLVLTYVKAISSGELPCMENAVLTLAQIENSAAVQKAIEHYEEQMNQKVQLPTETFKELLDLQRPIESEAIEVFIKKSFKDVDQKFQKKLGEQLVAKRDAFIKKNMDVSLAHCSDLLKDIFGPLEEEVKQGTFSKPGGYYLFLQKKRELEKKYNQTPGKGLQAEEALKKYFESKDDVAETLLKTDQSLTQAAREMEVERIKAEALEATNRALAEKQNKYELLMAEKDKSYQEHMKQLTEKMQQERVQLMAENEKIISLKLKEQERLLKEGFQYESSKLHQEIENIKKSQSSGKCTIL", "length": 589, "header": "tr|A0A9J7HDW6-1|A0A9J7HDW6_CRIGR Isoform 1 of Guanylate-binding protein 2-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100757382 PE=3 SV=1 CANONICAL=A0A9J7HDW6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", 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"title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7HE10-1", "uniprot_ac": "A0A9J7HE10", "uniprot_id": "A0A9J7HE10_CRIGR", "mass": { "chemical_mass": 29094.0, "monoisotopic_mass": 29094.0 }, "refseq": { "ac": "XP_035308971", "name": "uncharacterized protein LOC113832552", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308971" }, "gene_names": [ { "name": "LOC113832552", "type": "recommended", "evidence": [ { "id": "A0A9J7HE10", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HE10" } ] }, { "name": "LOC113832552", "type": "synonym", "evidence": [ { "id": "XP_035308971", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308971" } ] } ], "protein_names": [ { "name": "Uncharacterized protein LOC113832552", "type": "synonym", "evidence": [ { "id": "A0A9J7HE10", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HE10/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein LOC113832552", "type": "synonym", "evidence": [ { "id": "XP_035308971", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308971" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 30% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035308971", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308971" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HE10", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HE10" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113832552", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HE10", "locus": {} } ], "crossref": [ { "id": "A0A9J7HE10", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HE10", "database": "AlphaFoldDB", "categories": [] }, { "id": "113832552", "url": "https://www.ncbi.nlm.nih.gov/gene/113832552", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006907", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006907", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113832552", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113832552", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HE10", "url": "https://www.orthodb.org/?gene=A0A9J7HE10", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21558", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21558", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04822", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04822", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035308971", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308971", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HE10", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HE10", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HE10-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HE10-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKNLEKLTLQLHHMTCERNELREILANYGNKDLNNRLNFELEMLAMEHNKVMSDVQKLPMEISDALDKCEGLIEETESFTYYHGKILRECIQLKKNVQVSRLKNRLLRKEQIELQESCEEVKRLFKEIHEKIGDPCAEQHQEEDNMDESLKNLLKQEEVVTQQRELAEKLQHQFNISEMRPENLQTQLEQATDQEDSLLQTAPEAGAIGVTAPERPEEPKEATNNLDHGNEYPRIKSSSSEDNLQSPKEA", "length": 250, "header": "tr|A0A9J7HE10-1|A0A9J7HE10_CRIGR Isoform 1 of Uncharacterized protein LOC113832552 OS=Cricetulus griseus OX=10029 GN=LOC113832552 PE=4 SV=1 CANONICAL=A0A9J7HE10-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HE10-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HE10/entry#A0A9J7HE10-1", "sequence": { "sequence": "MKNLEKLTLQLHHMTCERNELREILANYGNKDLNNRLNFELEMLAMEHNKVMSDVQKLPMEISDALDKCEGLIEETESFTYYHGKILRECIQLKKNVQVSRLKNRLLRKEQIELQESCEEVKRLFKEIHEKIGDPCAEQHQEEDNMDESLKNLLKQEEVVTQQRELAEKLQHQFNISEMRPENLQTQLEQATDQEDSLLQTAPEAGAIGVTAPERPEEPKEATNNLDHGNEYPRIKSSSSEDNLQSPKEA", "length": 250, "header": "tr|A0A9J7HE10-1|A0A9J7HE10_CRIGR Isoform 1 of Uncharacterized protein LOC113832552 OS=Cricetulus griseus OX=10029 GN=LOC113832552 PE=4 SV=1 CANONICAL=A0A9J7HE10-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"MDPAERAQAARARVPRIDPYGFERPEDFDYEAYEEFFSTYLVILTKRAIKWSKLLKRSGGVRKSLTVKRYVRKGIPLEHRARVWMAMSGAQAQMDQNPGYYQRLLEGEGSPSLEEAIRTDLNRTFPDNVRFRKTAEPCLQKTLYNVLLAYGLHNQGVGYCQGMNFIAGYLILITKNEEESFWLLDALVGRILPDYYSPAMLGLKTDQEVLAELVRMKLPAVAALMDGHGVLWTLLVSRWFICLFVDILPVETVLRIWDCLFNEGSKIIFRVALTLIKQHQEFILEAKSVPDICDKFKQITKGDFVTECHTFMQKIFSEPGRLSMTTITRLRESCRAALLSQG", "length": 342, "header": "tr|A0A9J7J6B2-1|A0A9J7J6B2_CRIGR Computationally mapped isoform of Growth hormone-regulated TBC protein 1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Grtp1 PE=4 SV=1 CANONICAL=A0A9J7HEC8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HEC8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HEC8" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100760593", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760593", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "GTPase activator activity", "id": "GO:0005096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005096", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HEC8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HEC8" } ], "pmid": "" }, { "name": "small GTPase binding", "id": "GO:0031267", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031267", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HEC8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HEC8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 122, "end_pos": 124, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7HEC8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HEC8" }, { "id": "PS50086", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50086" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Rab-GAP TBC", "eco_id": "ECO_0000259", "start_pos": 74, "end_pos": 283, "start_aa": "Gly", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { 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computational analysis. This record is derived from a genomic sequence (NW_023276808.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035309456", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309456" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HEK4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HEK4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100758062", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HEK4", "locus": {} } ], "crossref": [ { "id": "100758062", "url": "https://www.ncbi.nlm.nih.gov/gene/100758062", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008014", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008014", "database": "InterPro", "categories": [ "Protein 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"publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "uniprot_canonical_ac": "A0A9J7HEL9-1", "uniprot_ac": "A0A9J7HEL9", "uniprot_id": "A0A9J7HEL9_CRIGR", "mass": { "chemical_mass": 29270.0, "monoisotopic_mass": 29270.0 }, "refseq": { "ac": "XP_035308899", "name": "translation initiation factor IF-2-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308899" }, "gene_names": [ { "name": "LOC118239689", "type": "recommended", "evidence": [ { "id": "A0A9J7HEL9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HEL9" } ] }, { "name": "LOC118239689", "type": "synonym", "evidence": [ { "id": "XP_035308899", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308899" } ] } ], "protein_names": [ { "name": "Translation initiation factor IF-2-like", "type": "synonym", "evidence": [ { "id": "A0A9J7HEL9", "database": "UniProtKB", "url": 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This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035308899", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308899" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HEL9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HEL9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC118239689", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HEL9", "locus": {} } ], "crossref": [ { "id": "A0A9J7HEL9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HEL9", "database": "AlphaFoldDB", "categories": [] }, { "id": "118239689", "url": "https://www.ncbi.nlm.nih.gov/gene/118239689", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:118239689", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118239689", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HEL9", "url": "https://www.orthodb.org/?gene=A0A9J7HEL9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "XP_035308899", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308899", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HEL9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HEL9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HEL9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HEL9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKSRGVRSTASPPSPVPARGLTVRQTQHHTCCLLHTTAPTRLSPRSAQPRSDLRALGTARSARPAPGAAGGRTAGAPRGERASPHSSPRLRGLALAARERRLPEWRAAERASRRCGPGGRTARVGPRSRTRGGAAAPSPRPGAEQREAAQAATGPAAARRPREAPKETPGRLSLRLGSWERPGEAPRLLTWGEDSRDPGGPGRTAEMPQTDTAAILETTTPSTPGKTETCRLFGEFSFPGLQPLVSQLPKQPLPEMQTHTGALAHARTHTTSYHTS", "length": 276, "header": "tr|A0A9J7HEL9-1|A0A9J7HEL9_CRIGR Isoform 1 of Translation initiation factor IF-2-like OS=Cricetulus griseus OX=10029 GN=LOC118239689 PE=4 SV=1 CANONICAL=A0A9J7HEL9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HEL9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HEL9/entry#A0A9J7HEL9-1", "sequence": { "sequence": "MKSRGVRSTASPPSPVPARGLTVRQTQHHTCCLLHTTAPTRLSPRSAQPRSDLRALGTARSARPAPGAAGGRTAGAPRGERASPHSSPRLRGLALAARERRLPEWRAAERASRRCGPGGRTARVGPRSRTRGGAAAPSPRPGAEQREAAQAATGPAAARRPREAPKETPGRLSLRLGSWERPGEAPRLLTWGEDSRDPGGPGRTAEMPQTDTAAILETTTPSTPGKTETCRLFGEFSFPGLQPLVSQLPKQPLPEMQTHTGALAHARTHTTSYHTS", "length": 276, "header": "tr|A0A9J7HEL9-1|A0A9J7HEL9_CRIGR Isoform 1 of Translation initiation factor IF-2-like OS=Cricetulus griseus OX=10029 GN=LOC118239689 PE=4 SV=1 CANONICAL=A0A9J7HEL9-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 223, "start_aa": "Thr", "end_pos": 223, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr223", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003615824.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035293122", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035293122" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HEM0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HEM0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Nlrp2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HEM0", "locus": {} } ], "crossref": [ { "id": "A0A9J7HEM0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HEM0", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd08320", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd08320", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100768765", "url": "https://www.ncbi.nlm.nih.gov/gene/100768765", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004020", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004020", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007111", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007111", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011029", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011029", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR041267", "url": "https://www.ebi.ac.uk/interpro/entry/IPR041267", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050637", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050637", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100768765", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768765", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HEM0", "url": "https://www.orthodb.org/?gene=A0A9J7HEM0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45690", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45690", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45690:SF14", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45690:SF14", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02758", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02758", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF05729", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05729", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13516", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13516", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF17776", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF17776", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035293122", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035293122", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HEM0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HEM0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HEM0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HEM0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], 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"length": 1007, "header": "tr|A0A9J7HEM0-1|A0A9J7HEM0_CRIGR Isoform 1 of NACHT, LRR and PYD domains-containing protein 2 OS=Cricetulus griseus OX=10029 GN=Nlrp2 PE=3 SV=1 CANONICAL=A0A9J7HEM0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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{ "uniprot_canonical_ac": "A0A9J7HEW5-1", "uniprot_ac": "A0A9J7HEW5", "uniprot_id": "A0A9J7HEW5_CRIGR", "mass": { "chemical_mass": 54439.0, "monoisotopic_mass": 54439.0 }, "refseq": { "ac": "XP_035309639", "name": "LOW QUALITY PROTEIN: GRB2-associated-binding protein 2-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309639" }, "gene_names": [ { "name": "LOC113838808", "type": "recommended", "evidence": [ { "id": "A0A9J7HEW5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HEW5" } ] }, { "name": "LOC113838808", "type": "synonym", "evidence": [ { "id": "XP_035309639", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309639" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: GRB2-associated-binding protein 2-like", "type": "synonym", "evidence": [ { "id": "XP_035309639", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309639" }, { "id": "A0A9J7HEW5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HEW5/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## internal stop codons :: corrected 1 genomic stop codon ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276913.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035309639", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309639" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HEW5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HEW5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113838808", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HEW5", "locus": {} } ], "crossref": [ { "id": "113838808", "url": "https://www.ncbi.nlm.nih.gov/gene/113838808", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001849", "database": "InterPro", "categories": [ "Protein 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"table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", 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"table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "uniprot_canonical_ac": "A0A9J7HF01-1", "uniprot_ac": "A0A9J7HF01", "uniprot_id": "A0A9J7HF01_CRIGR", "mass": { "chemical_mass": 47353.0, "monoisotopic_mass": 47353.0 }, "refseq": { "ac": "XP_035309545", "name": "zinc finger protein 431-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309545" }, "gene_names": [ { "name": "LOC113838034", "type": "recommended", "evidence": [ { "id": "A0A9J7HF01", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HF01" } ] }, { "name": "LOC113838034", "type": "synonym", "evidence": [ { "id": "XP_035309545", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309545" } ] } ], "protein_names": [ { "name": "Zinc finger protein 431-like", "type": "synonym", "evidence": [ { "id": "A0A9J7HF01", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HF01/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 431-like", "type": "synonym", "evidence": [ { "id": "XP_035309545", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309545" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276808.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035309545", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309545" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HF01", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HF01" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113838034", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HF01", "locus": {} } ], "crossref": [ { "id": "A0A9J7HF01", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HF01", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein 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This record is derived from a genomic sequence (NW_023276822.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035309580", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309580" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HF20", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HF20" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100759587", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HF20", "locus": {} } ], "crossref": [ { "id": "A0A9J7HF20", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HF20", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd23807", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd23807", "database": "CDD", "categories": [ "Protein 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This record is derived from a genomic sequence (NW_023276842.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: incomplete on the carboxy end.", "evidence": [ { "database": "RefSeq", "id": "XP_035309599", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309599" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HF30", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HF30" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113838483", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HF30", "locus": {} } ], "crossref": [ { "id": "A0A9J7HF30", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HF30", "database": "AlphaFoldDB", "categories": [] }, { "id": "113838483", "url": "https://www.ncbi.nlm.nih.gov/gene/113838483", "database": "GeneID", "categories": [ "Genome Annotation" ] 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"table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "uniprot_canonical_ac": "A0A9J7HF47-1", "uniprot_ac": "A0A9J7HF47", "uniprot_id": "A0A9J7HF47_CRIGR", "mass": { "chemical_mass": 40028.0, "monoisotopic_mass": 40028.0 }, "refseq": { "ac": "XP_035309634", "name": "carcinoembryonic antigen-related cell adhesion molecule 3-like isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309634" }, "gene_names": [ { "name": "LOC100755643", "type": "recommended", "evidence": [ { "id": "A0A9J7HF47", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HF47" } ] }, { "name": "LOC100755643", "type": "synonym", "evidence": [ { "id": "XP_035309634", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309634" } ] } ], "protein_names": [ { "name": "Carcinoembryonic antigen-related cell adhesion molecule 3-like isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7HF47", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HF47/entry#names_and_taxonomy" } ] }, { "name": "carcinoembryonic antigen-related cell adhesion molecule 3-like isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035309634", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309634" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 14% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276908.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035309634", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309634" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HF47", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HF47" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100755643", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HF47", "locus": {} } ], "crossref": [ { "id": "A0A9J7HF47", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HF47", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd05740", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05740", "database": "CDD", "categories": [ "Protein 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035305861", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305861" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HF81", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HF81" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC118239404", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HF81", "locus": {} } ], "crossref": [ { "id": "A0A9J7HF81", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HF81", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd06695", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06695", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "118239404", "url": "https://www.ncbi.nlm.nih.gov/gene/118239404", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001478", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001478", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036034", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036034", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052074", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052074", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:118239404", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118239404", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HF81", "url": "https://www.orthodb.org/?gene=A0A9J7HF81", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46900", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46900", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46900:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46900:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00595", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00595", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035305861", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035305861", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HF81", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HF81", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HF81-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HF81-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTIIPFPGDRLLQVDGVSLCGLTHKQAVQCLKGPGQVARLVLERRGPRVAPQCPSADDSMGDAHMAVSLVTARSGRPASCVSVTDGPKFEVKLKKNSSGLGFSFVQMERGNCSHLKSDLVRIKRLFPGQPAEEHGAIAAGDIILAVNGKSIEGLAFQEVLHVLRGAPEEVTLLLCRPPPGTLPEMKQGWQTPELSSDQRFTMATGTESEQSPSLDQDSWRDSASLDTGEGLGGRPESSYKAVREVKGDQNRQEPWTRSLMHPMESHPHLCKLHQEPETPALATSLEKDMRQNCYSVCDIRRLGRFSFSSSLTRLATDIF", "length": 319, "header": "tr|A0A9J7HF81-1|A0A9J7HF81_CRIGR Isoform 1 of PDZ domain-containing protein OS=Cricetulus griseus OX=10029 GN=LOC118239404 PE=4 SV=1 CANONICAL=A0A9J7HF81-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HF81-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HF81/entry#A0A9J7HF81-1", "sequence": { "sequence": "MTIIPFPGDRLLQVDGVSLCGLTHKQAVQCLKGPGQVARLVLERRGPRVAPQCPSADDSMGDAHMAVSLVTARSGRPASCVSVTDGPKFEVKLKKNSSGLGFSFVQMERGNCSHLKSDLVRIKRLFPGQPAEEHGAIAAGDIILAVNGKSIEGLAFQEVLHVLRGAPEEVTLLLCRPPPGTLPEMKQGWQTPELSSDQRFTMATGTESEQSPSLDQDSWRDSASLDTGEGLGGRPESSYKAVREVKGDQNRQEPWTRSLMHPMESHPHLCKLHQEPETPALATSLEKDMRQNCYSVCDIRRLGRFSFSSSLTRLATDIF", "length": 319, "header": "tr|A0A9J7HF81-1|A0A9J7HF81_CRIGR Isoform 1 of PDZ domain-containing protein OS=Cricetulus griseus OX=10029 GN=LOC118239404 PE=4 SV=1 CANONICAL=A0A9J7HF81-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 14% of CDS bases frameshifts :: corrected 1 indel internal stop codons :: corrected 1 genomic stop codon ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023277053.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035309716", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309716" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HF93", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HF93" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113839130", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HF93", "locus": {} } ], "crossref": [ { "id": "cd22490", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22490", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd22496", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22496", "database": "CDD", 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"tr|A0A9J7HF93-1|A0A9J7HF93_CRIGR Isoform 1 of LOW QUALITY PROTEIN: insulin-like growth factor 2 mRNA-binding protein 1 OS=Cricetulus griseus OX=10029 GN=LOC113839130 PE=3 SV=1 CANONICAL=A0A9J7HF93-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 74, "start_aa": "Thr", "end_pos": 74, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr74", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [], "pathway": [ { "id": "cge:113839130", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113839130", "resource": "KEGG Pathway" } 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"protein_names": [ { "name": "Transcription factor AP-2-delta isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7HFB1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFB1/entry#names_and_taxonomy" } ] }, { "name": "transcription factor AP-2-delta isoform X1", "type": "synonym", "evidence": [ { "id": "XP_035309382", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309382" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035309382", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309382" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HFB1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFB1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tfap2d", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFB1", "locus": {} } ], "crossref": [ { "id": "A0A9J7HFB1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HFB1", "database": "AlphaFoldDB", "categories": [] }, { "id": "100754897", "url": "https://www.ncbi.nlm.nih.gov/gene/100754897", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013854", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013854", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100754897", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754897", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HYEFQHG", "url": "https://omabrowser.org/oma/group/HYEFQHG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2LGI3", "url": "https://www.orthodb.org/?gene=A0A8C2LGI3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7HFB1", "url": "https://www.orthodb.org/?gene=A0A9J7HFB1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10812", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10812", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10812:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10812:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03299", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03299", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035309382", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309382", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2LGI3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LGI3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LGI3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LGI3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HFB1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFB1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HFB1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFB1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTNLKFFCSPLSPSSFQIRHDGSNSYRLMQLGCLESVANSTVAYSSSSPLTYSTTGTEFASPYFSTNHQYTPLHHQSFHYEFQHSHPAVTPDAYSLNSLHHSQQYYQQIHHGEPTDFINLHNARALKSSCLDEQRRELGCLDAYRRHDLSLMSHGSQYGMHPDQRLLPGPSLGLAAAGADDLQGSVEAQCGIVLNGQGGVIRRGGTCVVNPTDLFCSVPGRLSLLSSTSKYKVTIAEVKRRLSPPECLNASLLGGILRRAKSKNGGRCLREKLDRLGLNLPAGRRKAANVTLLTSLVEGEALHLARDFGYTCETEFPAKAVGEHLARQHMEQKEQTARKKMILATKQICKEFQDLLSQDRSPLGSSRPTPILDLDIQRHLTHFSLITHGFGTPAICAALSTFQTVLSEMLNYLEKHTTHKNGGAADSGQGHANSEKAPLRKASEAAVKEGKTEKTD", "length": 456, "header": "tr|A0A9J7HFB1-1|A0A9J7HFB1_CRIGR Isoform 1 of Transcription factor AP-2-delta isoform X1 OS=Cricetulus griseus OX=10029 GN=Tfap2d PE=3 SV=1 CANONICAL=A0A9J7HFB1-1" }, "isoforms": [ { "isoform_ac": "A0A8C2LGI3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFB1/entry#A0A8C2LGI3-1", "sequence": { "sequence": "MSTTFPGLVHDAEIRHDGSNSYRLMQLGCLESVANSTVAYSSSSPLTYSTTGTEFASPYFSTNHQYTPLHHQSFHYEFQHSHPAVTPDAYSLNSLHHSQQYYQQIHHGEPTDFINLHNARALKSSCLDEQRRELGCLDAYRRHDLSLMSHGSQYGMHPDQRLLPGPSLGLAAAGADDLQGSVEAQCGIVLNGQGGVIRRGGTCVVNPTDLFCSVPGRLSLLSSTSKYKVTIAEVKRRLSPPECLNASLLGGILRRAKSKNGGRCLREKLDRLGLNLPAGRRKAANVTLLTSLVEGEALHLARDFGYTCETEFPAKAVGEHLARQHMEQKEQTARKKMILATKQICKEFQDLLSQDRSPLGSSRPTPILDLDIQRHLTHFSLITHGFGTPAICAALSTFQTVLSEMLNYLEKHTTHKNGGAADSGQGHANSEKAPLRKASEAAVKEGKTEKTD", "length": 452, "header": "tr|A0A8C2LGI3-1|A0A8C2LGI3_CRIGR Computationally mapped isoform of Transcription factor AP-2-delta isoform X2 OS=Cricetulus griseus OX=10029 GN=Tfap2d PE=3 SV=1 CANONICAL=A0A9J7HFB1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HFB1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFB1/entry#A0A9J7HFB1-1", "sequence": { "sequence": "MTNLKFFCSPLSPSSFQIRHDGSNSYRLMQLGCLESVANSTVAYSSSSPLTYSTTGTEFASPYFSTNHQYTPLHHQSFHYEFQHSHPAVTPDAYSLNSLHHSQQYYQQIHHGEPTDFINLHNARALKSSCLDEQRRELGCLDAYRRHDLSLMSHGSQYGMHPDQRLLPGPSLGLAAAGADDLQGSVEAQCGIVLNGQGGVIRRGGTCVVNPTDLFCSVPGRLSLLSSTSKYKVTIAEVKRRLSPPECLNASLLGGILRRAKSKNGGRCLREKLDRLGLNLPAGRRKAANVTLLTSLVEGEALHLARDFGYTCETEFPAKAVGEHLARQHMEQKEQTARKKMILATKQICKEFQDLLSQDRSPLGSSRPTPILDLDIQRHLTHFSLITHGFGTPAICAALSTFQTVLSEMLNYLEKHTTHKNGGAADSGQGHANSEKAPLRKASEAAVKEGKTEKTD", "length": 456, "header": "tr|A0A9J7HFB1-1|A0A9J7HFB1_CRIGR Isoform 1 of Transcription factor AP-2-delta isoform X1 OS=Cricetulus griseus OX=10029 GN=Tfap2d PE=3 SV=1 CANONICAL=A0A9J7HFB1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HFB1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFB1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HFB1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFB1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100754897", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754897", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A4X1V0Q4-1", "protein_name": "Transcription factor AP-2 delta", "gene_name": "TFAP2D", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MSTTFPGLVHDAEIRHDGSNSYRLMQLGCLESVANSTVAYSSSSPLTYSTTGTEFASPYFSTNHQYTPLHHQSFHYEFQHSHPAVTPDAYSLNSLHHSQQYYQQIHHGEPTDFINLHNARALKSSCLDEQRRELGCLDAYRRHDLSLMSHGSQYGMHPDQRLLPGPSLGLAAAGADDLQGSVEAQCGLVLNGQGGVIRRGGTCVVNPTDLFCSVPGRLSLLSSTSKYKVTIAEVKRRLSPPECLNASLLGGILRRAKSKNGGRCLREKLDRLGLNLPAGRRKAANVTLLTSLVEGEALHLARDFGYTCETEFPAKAVGEHLARQHMEQKEQTARKKMILATKQICKEFQDLLSQDRSPLGSSRPTPILDLDIQRHLTHFSLITHGFGTPAICAALSTFQTVLSEMLNYLEKHTTHKNGGAADSGQGHGTSEKAPLRKTSEAAVKEGKTEKTD", "length": 452 }, "evidence": [ { "id": "A0A9J7HFB1", "url": "https://omabrowser.org/oma/group/A0A9J7HFB1/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8I5ZJN7-1", "protein_name": "Transcription factor AP-2 delta", "gene_name": "Tfap2d", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSTTFPGLVHDAEIRHDGSNSYRLMQLGCLESVANSTVAYSSSSPLTYSTTGTEFASPYFSTNHQYTPLHHQSFHYEFQHSHPAVTPDAYSLNSLHHSQQYYQQIHHGEPTDFINLHNARALKSSCLDEQRRELGCLDAYRRHDLSLMSHGSQYGMHPDQRLLPGPSLGLAAAGADDLQGSVEAQCGIVLNGQGGVIRRGGTCVVNPTDLFCSVPGRLSLLSSTSKYKVTIAEVKRRLSPPECLNASLLGGILRRAKSKNGGRCLREKLDRLGLNLPAGRRKAANVTLLTSLVEGEALHLARDFGYTCETEFPAKAVGEHLARQHMEQKEQTARKKMILATKQICKEFQDLLSQDRSPLGSSRPTPILDLDIQRHLTHFSLITHGFGTPAICAALSTFQTVLSEMLNYLEKHTTHKNGGAADSGQGHANSEKAPLRKASEAAVKEGKTEKTD", "length": 452 }, "evidence": [ { "id": "A0A9J7HFB1", "url": "https://omabrowser.org/oma/group/A0A9J7HFB1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1BNP7-1", "protein_name": "Transcription factor AP-2 delta", "gene_name": "TFAP2D", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSTTFPGLVHDAEIRHDGSNSYRLMQLGCLESVANSTVAYSSSSPLTYSTTGTEFASPYFSTNHQYTPLHHQSFHYEFQHSHPAVTPDAYSLNSLHHSQQYYQQIHHGEPTDFINLHNARALKSSCLDEQRRELGCLDAYRRHDLSLMSHGSQYGMHPDQRLLPGPSLGLAAAGADDLQGSVEAQCGLVLNGQGGVIRRGGTCVVNPTDLFCSVPGRLSLLSSTSKYKVTIAEVKRRLSPPECLNASLLGGILRRAKSKNGGRCLREKLDRLGLNLPAGRRKAANVTLLTSLVEGEALHLARDFGYTCETEFPAKAVGEHLARQHMEQKEQTARKKMILATKQICKEFQDLLSQDRSPLGSSRPTPILDLDIQRHLTHFSLITHGFGTPAICAALSTFQTVLSEMLNYLEKHTTHKNGGAADSGQGHGTSEKAPLRKTSEAAVKEGKTEKTD", "length": 452 }, "evidence": [ { "id": "A0A9J7HFB1", "url": "https://omabrowser.org/oma/group/A0A9J7HFB1/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "E1C135-1", "protein_name": "Transcription factor AP-2 delta", "gene_name": "TFAP2D", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSTTFPGLVHDAEIRHDGSNSYRLMQLGCLESVANSTVAYSSSSPLTYSTTGTEFASPYFSTNHQYTPLHHQSFHYEFQHSHPAVNPDAYSLNSLHHSQQYYQQIHHGEPTDFINLHNARALKSSCLDEQRRELGCLDAYRRHDLSLMSHGSQYGMHPDQRLLPGPSLGLAASGADDLQSSVEAQCGLVLNGQGGVIRRGGTCVVNPTDLFCSVPGRLSLLSSTSKYKVTIAEVKRRLSPPECLNASLLGGILRRAKSKNGGRCLREKLDRLGLNLPAGRRKAANVTLLTSLVEGEALHLARDFGYTCETEFPAKAVGEHIARQHMEQKEQTARKKMILATKQICKEFQDLLSQDRSPLGSSRPTPILDLDIQRHLTHFSLITHGFGTPAICAALSTFQTVLSEMLNYLEKHTSHKNGGAAESGQGHANSEKAPLRKTSEAAVKEGKTEKTD", "length": 452 }, "evidence": [ { "id": "A0A9J7HFB1", "url": "https://omabrowser.org/oma/group/A0A9J7HFB1/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q5RJ20-1", "protein_name": "Transcription factor AP-2-delta", "gene_name": "tfap2d", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MSATFPGLVHDAEIRHDGSNSYRLMQLGCLESVANSSVAYSSSSPLTYPATGTEFASPYFPTNHQYTPLHHQSFHYEFQHSHPAVNPDAYSLNSLHHSQQYYQQLHHGEPADFINLHNARALKSSCLDEQRRELGCLDAYRRHDLSIMSHGSQYGMHPEQRLLPGAGLGLPPPGADDLQGSVDAQCGLVLNGQGGVIRRGGTCVVNPTDLFCSVPGRLSLLSSTSKYKVTIAEVKRRLSPPECLNASLLGGILRRAKSKNGGRCLREKLDRLGLNLPAGRRKAANVTLLTSLVEGEALHLARDFGYTCETEFPTKAVGEHLARQHTEPKEQNARKKMVLATKQICKEFQDLLSQDRSPLGSSRPTPILDLDIQRHLTHFSLITHGFGTPAICAALSTFQTILSEMLNYLEKHSANKSTGTPDTNQINSNSDKTLRKTEAPTKDGKIEKTE", "length": 450 }, "evidence": [ { "id": "A0A9J7HFB1", "url": "https://omabrowser.org/oma/group/A0A9J7HFB1/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "Q7Z6R9-1", "protein_name": "Transcription factor AP-2-delta", "gene_name": "TFAP2D", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MSTTFPGLVHDAEIRHDGSNSYRLMQLGCLESVANSTVAYSSSSPLTYSTTGTEFASPYFSTNHQYTPLHHQSFHYEFQHSHPAVTPDAYSLNSLHHSQQYYQQIHHGEPTDFINLHNARALKSSCLDEQRRELGCLDAYRRHDLSLMSHGSQYGMHPDQRLLPGPSLGLAAAGADDLQGSVEAQCGLVLNGQGGVIRRGGTCVVNPTDLFCSVPGRLSLLSSTSKYKVTIAEVKRRLSPPECLNASLLGGILRRAKSKNGGRCLREKLDRLGLNLPAGRRKAANVTLLTSLVEGEALHLARDFGYTCETEFPAKAVGEHLARQHMEQKEQTARKKMILATKQICKEFQDLLSQDRSPLGSSRPTPILDLDIQRHLTHFSLITHGFGTPAICAALSTFQTVLSEMLNYLEKHTTHKNGGAADSGQGHANSEKAPLRKTSEAAVKEGKTEKTD", "length": 452 }, "evidence": [ { "id": "A0A9J7HFB1", "url": "https://omabrowser.org/oma/group/A0A9J7HFB1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q91ZK0-1", "protein_name": "Transcription factor AP-2-delta", "gene_name": "Tfap2d", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSTTFPGLVHDAEIRHDGSNSYRLMQLGCLESVANSTVAYSSSSPLTYSTTGTEFASPYFSTNHQYTPLHHQSFHYEFQHSHPAVTPDAYSLNSLHHSQQYYQQIHHGEPTDFINLHNARALKSSCLDEQRRELGCLDAYRRHDLSLMSHGSQYGMHPDQRLLPGPSLGLAAAGADDLQGSVEAQCGIVLNGQGGVIRRGGTCVVNPTDLFCSVPGRLSLLSSTSKYKVTIAEVKRRLSPPECLNASLLGGILRRAKSKNGGRCLREKLDRLGLNLPAGRRKAANVTLLTSLVEGEALHLARDFGYTCETEFPAKAVGEHLARQHMEQKEQTARKKMILATKQICKEFQDLLSQDRSPLGSSRPTPILDLDIQRHLTHFSLITHGFGTPAICAALSTFQTVLSEMLNYLEKHTTHKNGGAADSGQGHANSEKAPLRKASEAAVKEGKTEKTD", "length": 452 }, "evidence": [ { "id": "A0A9J7HFB1", "url": "https://omabrowser.org/oma/group/A0A9J7HFB1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HFB1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFB1" } ], "pmid": "" }, { "name": "transcription regulator 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"https://www.ebi.ac.uk/QuickGO/term/GO:0000977", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HFB1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFB1" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HFB1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFB1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 249, "end_pos": 251, "annotation": "n_glycosylation_sequon" }, { "start_pos": 289, "end_pos": 291, "annotation": "n_glycosylation_sequon" }, { "start_pos": 39, "end_pos": 41, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7HFB1", "database": 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:: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035308657", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308657" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HFD2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFD2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC118239653", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFD2", "locus": {} } ], "crossref": [ { "id": "A0A9J7HFD2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HFD2", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd09851", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09851", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "118239653", "url": "https://www.ncbi.nlm.nih.gov/gene/118239653", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008981", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008981", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018154", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018154", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:118239653", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118239653", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HFD2", "url": "https://www.orthodb.org/?gene=A0A9J7HFD2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10424", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10424", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10424:SF72", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10424:SF72", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00429", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00429", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035308657", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308657", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HFD2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFD2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HFD2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFD2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDRTPHSKSFKDKTLSYTLLLIGCLFTPHVATNPHRVYNITWKIANLGTGEIANLSTYIGTLHDGFPPLYVDLCDLVGSDWDPSDQEPFPGYGCHHPGGRIGTRSKDFYVCPGHRPTHDCGGPQEGYCASWGCETTGEAYWKPSSSWDFITLKRREIPGYTGKGPWRCGQRACGPCYDSAGGGGFQGATPGGKCNPLILRFTDAGKRTTWDSPKVWGLRLHRAGKDPVTLFSLYRQITPLSQQSVGPNTVIADQRAPTQFQVPEPPTVPKAITPTPDAVIFSPTPDALNIELTRDPPGTGDRLLQLIQGVYQALNFSDPNKTQECWLCLVSRPPYYEGVAILGNYSNQTSAPTSCGAAMQHKLTISEVSGKGLCIGRIPPSHQELCNQVEPLSQDSRYLVAPYGTYWACSTGLTPCVSTTVLNTTIDFCILIELWPKVTYHQPEYVYSVLGKSTRYKREPISLTVALLLGGITVGGIAAGIGTGTVALQGINHFKLLQQAMNTDIQVLEESVSALEKSLTSLSEVVLQNRRGLDLLFLQEGGLCAALKEECCFYADHTGIVRDSMAKLRERLKQRQQLFESQQGWFEGWFTKSPWITTLVSTLMGPLIILLLILILGPCILNKITQFIRERLSAIQTLVLTQQYHQLKQIDPEYPETSE", "length": 659, "header": "tr|A0A9J7HFD2-1|A0A9J7HFD2_CRIGR Isoform 1 of MLV-related proviral Env polyprotein-like OS=Cricetulus griseus OX=10029 GN=LOC118239653 PE=4 SV=1 CANONICAL=A0A9J7HFD2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HFD2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFD2/entry#A0A9J7HFD2-1", "sequence": { "sequence": "MDRTPHSKSFKDKTLSYTLLLIGCLFTPHVATNPHRVYNITWKIANLGTGEIANLSTYIGTLHDGFPPLYVDLCDLVGSDWDPSDQEPFPGYGCHHPGGRIGTRSKDFYVCPGHRPTHDCGGPQEGYCASWGCETTGEAYWKPSSSWDFITLKRREIPGYTGKGPWRCGQRACGPCYDSAGGGGFQGATPGGKCNPLILRFTDAGKRTTWDSPKVWGLRLHRAGKDPVTLFSLYRQITPLSQQSVGPNTVIADQRAPTQFQVPEPPTVPKAITPTPDAVIFSPTPDALNIELTRDPPGTGDRLLQLIQGVYQALNFSDPNKTQECWLCLVSRPPYYEGVAILGNYSNQTSAPTSCGAAMQHKLTISEVSGKGLCIGRIPPSHQELCNQVEPLSQDSRYLVAPYGTYWACSTGLTPCVSTTVLNTTIDFCILIELWPKVTYHQPEYVYSVLGKSTRYKREPISLTVALLLGGITVGGIAAGIGTGTVALQGINHFKLLQQAMNTDIQVLEESVSALEKSLTSLSEVVLQNRRGLDLLFLQEGGLCAALKEECCFYADHTGIVRDSMAKLRERLKQRQQLFESQQGWFEGWFTKSPWITTLVSTLMGPLIILLLILILGPCILNKITQFIRERLSAIQTLVLTQQYHQLKQIDPEYPETSE", "length": 659, "header": "tr|A0A9J7HFD2-1|A0A9J7HFD2_CRIGR Isoform 1 of MLV-related proviral Env polyprotein-like OS=Cricetulus griseus OX=10029 GN=LOC118239653 PE=4 SV=1 CANONICAL=A0A9J7HFD2-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 267, "start_aa": "Thr", "end_pos": 267, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr267", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 275, "start_aa": "Thr", "end_pos": 275, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr275", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HFD2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFD2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HFD2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFD2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:118239653", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:118239653", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 315, "end_pos": 317, "annotation": "n_glycosylation_sequon" }, { "start_pos": 320, "end_pos": 322, "annotation": "n_glycosylation_sequon" }, { "start_pos": 344, "end_pos": 346, "annotation": "n_glycosylation_sequon" }, { "start_pos": 347, "end_pos": 349, "annotation": "n_glycosylation_sequon" }, { "start_pos": 39, "end_pos": 41, "annotation": "n_glycosylation_sequon" }, { "start_pos": 423, "end_pos": 425, "annotation": "n_glycosylation_sequon" }, { "start_pos": 54, "end_pos": 56, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 267, 275 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 315, "end_pos": 317 }, { "start_pos": 320, "end_pos": 322 }, { "start_pos": 344, "end_pos": 346 }, { "start_pos": 347, "end_pos": 349 }, { "start_pos": 39, "end_pos": 41 }, { "start_pos": 423, "end_pos": 425 }, { "start_pos": 54, "end_pos": 56 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7HFD6-1", "uniprot_ac": "A0A9J7HFD6", "uniprot_id": "A0A9J7HFD6_CRIGR", "mass": { "chemical_mass": 141894.0, "monoisotopic_mass": 141894.0 }, "refseq": { "ac": "XP_035309337", "name": "LOW QUALITY PROTEIN: von Willebrand factor A domain-containing protein 3B isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309337" }, "gene_names": [ { "name": "Vwa3b", "type": "recommended", "evidence": [ { "id": "A0A9J7HFD6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFD6" } ] }, { "name": "Vwa3b", "type": "synonym", "evidence": [ { "id": "XP_035309337", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309337" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: von Willebrand factor A domain-containing protein 3B isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035309337", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309337" }, { "id": "A0A9J7HFD6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFD6/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## internal stop codons :: corrected 1 genomic stop codon ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035309337", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309337" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HFD6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFD6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Vwa3b", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFD6", "locus": {} } ], "crossref": [ { "id": "cd00198", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00198", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100771653", "url": "https://www.ncbi.nlm.nih.gov/gene/100771653", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002035", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002035", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032770", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032770", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036465", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036465", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100771653", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771653", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HFD6", "url": "https://www.orthodb.org/?gene=A0A9J7HFD6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46785", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46785", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46785:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46785:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13768", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13768", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF15057", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15057", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035309337", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309337", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HFD6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFD6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HFD6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFD6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 3% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. 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"A0A9J7HFE6-1", "uniprot_ac": "A0A9J7HFE6", "uniprot_id": "A0A9J7HFE6_CRIGR", "mass": { "chemical_mass": 43522.0, "monoisotopic_mass": 43522.0 }, "refseq": { "ac": "XP_035309804", "name": "LOW QUALITY PROTEIN: tripartite motif-containing protein 6-like isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309804" }, "gene_names": [ { "name": "LOC100762063", "type": "recommended", "evidence": [ { "id": "A0A9J7HFE6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFE6" } ] }, { "name": "LOC100762063", "type": "synonym", "evidence": [ { "id": "XP_035309804", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309804" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: tripartite motif-containing protein 6-like isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035309804", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309804" }, { "id": "A0A9J7HFE6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFE6/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases frameshifts :: corrected 1 indel internal stop codons :: corrected 1 genomic stop codon ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023277412.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035309804", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309804" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HFE6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFE6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100762063", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFE6", "locus": {} } ], "crossref": [ { "id": "100762063", "url": "https://www.ncbi.nlm.nih.gov/gene/100762063", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001870", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001870", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003877", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003877", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003879", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003879", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006574", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006574", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013320", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013320", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043136", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043136", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050143", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050143", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100762063", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762063", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HFE6", "url": "https://www.orthodb.org/?gene=A0A9J7HFE6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24103", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24103", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00622", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00622", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035309804", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309804", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HFE6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFE6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HFE6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFE6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLLEEHHGHLTFLTEEVTKDYQEXFQESLKKLRKEQQEAERLKALIQEERESWKNQVEPERRRIRIEFKQQRSNLDQEEQRELRNLEVEEKGLRHHREGGDDLIHQSQSLKGLISDLEHRCQGSTVELLQHVSYVTKRSQFWTLRNPQALPTKLKSLFRAPHLKKMLLVFXELTNVQRYWVDVSLNPQTSNLNLVLSKKQRQVRFVGAKLSKPSCLEEHYDCSVLGSQHFSGNCYWEVDVERITDVTKKTAWILGVCSNPVEPMFSFSQYLGKKNAYSRYQPQSGYWVIGLQHKHEYRAYEDSTSLLVSMTVPPHHLGVFLDYEAGTVSFYNVTNHGFLIYSISKYYFPTALCPYSNPCSCVVPMTLCRPSP", "length": 372, "header": "tr|A0A9J7HFE6-1|A0A9J7HFE6_CRIGR Isoform 1 of LOW QUALITY PROTEIN: tripartite motif-containing protein 6-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100762063 PE=4 SV=1 CANONICAL=A0A9J7HFE6-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HFE6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFE6/entry#A0A9J7HFE6-1", "sequence": { "sequence": "MLLEEHHGHLTFLTEEVTKDYQEXFQESLKKLRKEQQEAERLKALIQEERESWKNQVEPERRRIRIEFKQQRSNLDQEEQRELRNLEVEEKGLRHHREGGDDLIHQSQSLKGLISDLEHRCQGSTVELLQHVSYVTKRSQFWTLRNPQALPTKLKSLFRAPHLKKMLLVFXELTNVQRYWVDVSLNPQTSNLNLVLSKKQRQVRFVGAKLSKPSCLEEHYDCSVLGSQHFSGNCYWEVDVERITDVTKKTAWILGVCSNPVEPMFSFSQYLGKKNAYSRYQPQSGYWVIGLQHKHEYRAYEDSTSLLVSMTVPPHHLGVFLDYEAGTVSFYNVTNHGFLIYSISKYYFPTALCPYSNPCSCVVPMTLCRPSP", "length": 372, "header": "tr|A0A9J7HFE6-1|A0A9J7HFE6_CRIGR Isoform 1 of LOW QUALITY PROTEIN: tripartite motif-containing protein 6-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100762063 PE=4 SV=1 CANONICAL=A0A9J7HFE6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [], "pathway": [ { "id": "cge:100762063", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762063", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 332, "end_pos": 334, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7HFE6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFE6" }, { "id": "PS50188", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50188" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "B30.2/SPRY", "eco_id": "ECO_0000259", "start_pos": 163, "end_pos": 372, "start_aa": "Leu", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 332, "end_pos": 334 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "uniprot_canonical_ac": "A0A9J7HFF4-1", "uniprot_ac": "A0A9J7HFF4", "uniprot_id": "A0A9J7HFF4_CRIGR", "mass": { "chemical_mass": 78606.0, "monoisotopic_mass": 78606.0 }, "refseq": { "ac": "XP_035309369", "name": "phospholipase DDHD1 isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309369" }, "gene_names": [ { "name": "Ddhd1", "type": "recommended", "evidence": [ { "id": "A0A9J7HFF4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFF4" } ] }, { "name": "Ddhd1", "type": "synonym", "evidence": [ { "id": "XP_035309369", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309369" } ] } ], "protein_names": [ { "name": "Phospholipase DDHD1 isoform X3", "type": "synonym", "evidence": [ { "id": "A0A9J7HFF4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFF4/entry#names_and_taxonomy" } ] }, { "name": "phospholipase DDHD1 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_035309369", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309369" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035309369", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309369" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HFF4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFF4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ddhd1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFF4", "locus": {} } ], "crossref": [ { "id": "A0A9J7HFF4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HFF4", "database": "AlphaFoldDB", "categories": [] }, { "id": "100761687", "url": "https://www.ncbi.nlm.nih.gov/gene/100761687", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004177", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004177", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058055", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058055", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100761687", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761687", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HFF4", "url": "https://www.orthodb.org/?gene=A0A9J7HFF4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23509", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23509", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23509:SF32", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23509:SF32", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02862", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02862", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035309369", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309369", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HFF4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFF4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HFF4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFF4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J761", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J761", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J761-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J761-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEELVTIEPVCVRGGLYEVDVTQGECYPVYWNQSDKIPVMRGQWFIDGTWQPLEEEESNLIEREHLSCFRGQQMQENFDIDVSKSVDGKDVVYHLPPFSLPSLFKWRGYKESTDATGLKRKRSQAVHSFKLSRNHVDWHSMDEVYLYSDATTSKIARTVTQKLGFSKASSSGTRLHRGYVEEATLEDKPSQTSHIVFVVHGIGQKMDQGRIIKNTAMMREAARKIEERHFSNHATHVEFLPVEWRSKLTLDGDTVDSITPDKVRGLRDMLNSSAMDIMYYTSPLYRDELVKGLQQELNRLYSLFCSRNPDFEEKGGKVSIVSHSLGCVITYDIMTGWNPVRLYEQLLQKEEELPDERWMSYEERHLLDELYITKRRLREIEERLHGLKASSITQTPALKFKVENFFCMGSPLAVFLALRGIRPGNTGSQDHILPREICNRLLNIFHPTDPVAYRLEPLILKHYSNISPVQIHWYNTSNPLPYEHMKPNFLNPAKEPTSVSENESIANIPSPVTSPVLQRRHYGESITNIGKASILGAASIGKGLGGMLFSRFGRSSTSQSSEPSKDTVEDEKKPVASPSTTTVATQTLPHSSSGFLDSAYFRLQESFFYLPQLLFPENVMQNKDDSLVELEHRIDFELREGLVESRYWSAVTSHTAYWSSLDVALFLLTFMYKHEHDNDAKPSLDPI", "length": 687, "header": "tr|A0A9J7HFF4-1|A0A9J7HFF4_CRIGR Isoform 1 of Phospholipase DDHD1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Ddhd1 PE=3 SV=1 CANONICAL=A0A9J7HFF4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HFF4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFF4/entry#A0A9J7HFF4-1", "sequence": { "sequence": "MEELVTIEPVCVRGGLYEVDVTQGECYPVYWNQSDKIPVMRGQWFIDGTWQPLEEEESNLIEREHLSCFRGQQMQENFDIDVSKSVDGKDVVYHLPPFSLPSLFKWRGYKESTDATGLKRKRSQAVHSFKLSRNHVDWHSMDEVYLYSDATTSKIARTVTQKLGFSKASSSGTRLHRGYVEEATLEDKPSQTSHIVFVVHGIGQKMDQGRIIKNTAMMREAARKIEERHFSNHATHVEFLPVEWRSKLTLDGDTVDSITPDKVRGLRDMLNSSAMDIMYYTSPLYRDELVKGLQQELNRLYSLFCSRNPDFEEKGGKVSIVSHSLGCVITYDIMTGWNPVRLYEQLLQKEEELPDERWMSYEERHLLDELYITKRRLREIEERLHGLKASSITQTPALKFKVENFFCMGSPLAVFLALRGIRPGNTGSQDHILPREICNRLLNIFHPTDPVAYRLEPLILKHYSNISPVQIHWYNTSNPLPYEHMKPNFLNPAKEPTSVSENESIANIPSPVTSPVLQRRHYGESITNIGKASILGAASIGKGLGGMLFSRFGRSSTSQSSEPSKDTVEDEKKPVASPSTTTVATQTLPHSSSGFLDSAYFRLQESFFYLPQLLFPENVMQNKDDSLVELEHRIDFELREGLVESRYWSAVTSHTAYWSSLDVALFLLTFMYKHEHDNDAKPSLDPI", "length": 687, "header": "tr|A0A9J7HFF4-1|A0A9J7HFF4_CRIGR Isoform 1 of Phospholipase DDHD1 isoform X3 OS=Cricetulus griseus OX=10029 GN=Ddhd1 PE=3 SV=1 CANONICAL=A0A9J7HFF4-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J761-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFF4/entry#A0A9J7J761-1", "sequence": { "sequence": "MEELVTIEPVCVRGGLYEVDVTQGECYPVYWNQSDKIPVMRGQWFIDGTWQPLEEEESNLIEREHLSCFRGQQMQENFDIDVSKSVDGKDAVHSFKLSRNHVDWHSMDEVYLYSDATTSKIARTVTQKLGFSKASSSGTRLHRGYVEEATLEDKPSQTSHIVFVVHGIGQKMDQGRIIKNTAMMREAARKIEERHFSNHATHVEFLPVEWRSKLTLDGDTVDSITPDKVRGLRDMLNSSAMDIMYYTSPLYRDELVKGLQQELNRLYSLFCSRNPDFEEKGGKVSIVSHSLGCVITYDIMTGWNPVRLYEQLLQKEEELPDERWMSYEERHLLDELYITKRRLREIEERLHGLKASSITQTPALKFKVENFFCMGSPLAVFLALRGIRPGNTGSQDHILPREICNRLLNIFHPTDPVAYRLEPLILKHYSNISPVQIHWYNTSNPLPYEHMKPNFLNPAKEPTSVSENESIANIPSPVTSPVLQRRHYGESITNIGKASILGAASIGKGLGGMLFSRFGRSSTSQSSEPSKDTVEDEKKPVASPSTTTVATQTLPHSSSGFLDSAYFRLQESFFYLPQLLFPENVMQNKDDSLVELEHRIDFELREGLVESRYWSAVTSHTAYWSSLDVALFLLTFMYKHEHDNDAKPSLDPI", "length": 653, "header": "tr|A0A9J7J761-1|A0A9J7J761_CRIGR Computationally mapped isoform of Phospholipase DDHD1 isoform X4 OS=Cricetulus griseus OX=10029 GN=Ddhd1 PE=3 SV=1 CANONICAL=A0A9J7HFF4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HFF4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFF4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HFF4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFF4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100761687", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761687", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HFF4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFF4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": 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"authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7HFG3-1", "uniprot_ac": "A0A9J7HFG3", "uniprot_id": "A0A9J7HFG3_CRIGR", "mass": { "chemical_mass": 29757.0, "monoisotopic_mass": 29757.0 }, "refseq": { "ac": "XP_035309836", "name": "LOW QUALITY PROTEIN: doublesex- and mab-3-related transcription factor C1-like isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309836" }, "gene_names": [ { "name": "LOC100769265", "type": "recommended", "evidence": [ { "id": "A0A9J7HFG3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFG3" } ] }, { "name": "LOC100769265", "type": "synonym", "evidence": [ { "id": "XP_035309836", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309836" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: doublesex- and mab-3-related transcription factor C1-like isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035309836", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309836" }, { "id": "A0A9J7HFG3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFG3/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 15% of CDS bases frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023277441.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035309836", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309836" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HFG3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFG3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100769265", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFG3", "locus": {} } ], "crossref": [ { "id": "100769265", "url": "https://www.ncbi.nlm.nih.gov/gene/100769265", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR031577", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031577", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100769265", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769265", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HFG3", "url": "https://www.orthodb.org/?gene=A0A9J7HFG3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PF15791", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15791", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035309836", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309836", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HFG3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFG3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HFG3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFG3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MQDCLSVPENGLWGVKATLTTSTTIASLSKSGIXKHFCLFQSHKCHICTCEGKHGPLYAVRASRKEQGARLKRHLDQGLIKNMAVAPKIYKHGKRLPVEAENCNGKESTVHKSEARYHKAPQEMGKSQGTLMHSQGRERSILPYTPVTSEQKPMISFSRDPRGLSAKRFSSVILQPRATPGPLLLQSQVPRATKQDSVAATSEWQRKLEAAEALLTLKNSCQPPPDFLSLQQPGSMSCWRARTAPSSAYLPPPSATSVSLTGHLKCMSFLT", "length": 271, "header": "tr|A0A9J7HFG3-1|A0A9J7HFG3_CRIGR Isoform 1 of LOW QUALITY PROTEIN: doublesex- and mab-3-related transcription factor C1-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100769265 PE=3 SV=1 CANONICAL=A0A9J7HFG3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HFG3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFG3/entry#A0A9J7HFG3-1", "sequence": { "sequence": "MQDCLSVPENGLWGVKATLTTSTTIASLSKSGIXKHFCLFQSHKCHICTCEGKHGPLYAVRASRKEQGARLKRHLDQGLIKNMAVAPKIYKHGKRLPVEAENCNGKESTVHKSEARYHKAPQEMGKSQGTLMHSQGRERSILPYTPVTSEQKPMISFSRDPRGLSAKRFSSVILQPRATPGPLLLQSQVPRATKQDSVAATSEWQRKLEAAEALLTLKNSCQPPPDFLSLQQPGSMSCWRARTAPSSAYLPPPSATSVSLTGHLKCMSFLT", "length": 271, "header": "tr|A0A9J7HFG3-1|A0A9J7HFG3_CRIGR Isoform 1 of LOW QUALITY PROTEIN: doublesex- and mab-3-related transcription factor C1-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100769265 PE=3 SV=1 CANONICAL=A0A9J7HFG3-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 179, "start_aa": "Thr", "end_pos": 179, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr179", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [], "pathway": [ { "id": "cge:100769265", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769265", "resource": "KEGG Pathway" } ], 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This record is derived from a genomic sequence (NW_023276905.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035309631", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309631" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HFQ5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFQ5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113839062", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFQ5", "locus": {} } ], "crossref": [ { "id": "A0A9J7HFQ5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HFQ5", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd09273", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09273", "database": "CDD", "categories": [ "Protein 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"KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HFQ5", "url": "https://www.orthodb.org/?gene=A0A9J7HFQ5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR41694", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR41694", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR41694:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR41694:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00075", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00075", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00665", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00665", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16721", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16721", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035309631", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309631", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HFQ5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFQ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HFQ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFQ5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLLDKDRVHFGPLVTLNPATLLPLPGEPEAHDCLQVLAEAHGARPDLTDQPLPSPDHIWFTDGSSFLHQGERRAGAAVTTENQVVWAQALPPGTSAQRAELIALTQALKLAEGKRLTVYTDSRNAFATAHIHGEIYRRRGLLTSEGKDIKNKEEILALLRALHLPAALSIIHCPGHQKGDSFEARGNRRADLAAREAALTTDTTNLLALEPTNDHPSPSWDYEQRDIQTLEKLGATKEPNGDWTYEGKTVIPYRVTKYLVTFLHKMTHLSSKKMRELLEREEEFNFLLGKNDILKQVTEQCDACARVNASRLKLPPGNRVRGYRPGTHWEIDFTEIKPGKYGYKYLLVFVDTFSGWVEAFPTKHETAKIVTKKLLEEIFPRYGMPQLIYRPSN", "length": 393, "header": "tr|A0A9J7HFQ5-1|A0A9J7HFQ5_CRIGR Isoform 1 of Uncharacterized protein LOC113839062 OS=Cricetulus griseus OX=10029 GN=LOC113839062 PE=4 SV=1 CANONICAL=A0A9J7HFQ5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HFQ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFQ5/entry#A0A9J7HFQ5-1", "sequence": { "sequence": "MLLDKDRVHFGPLVTLNPATLLPLPGEPEAHDCLQVLAEAHGARPDLTDQPLPSPDHIWFTDGSSFLHQGERRAGAAVTTENQVVWAQALPPGTSAQRAELIALTQALKLAEGKRLTVYTDSRNAFATAHIHGEIYRRRGLLTSEGKDIKNKEEILALLRALHLPAALSIIHCPGHQKGDSFEARGNRRADLAAREAALTTDTTNLLALEPTNDHPSPSWDYEQRDIQTLEKLGATKEPNGDWTYEGKTVIPYRVTKYLVTFLHKMTHLSSKKMRELLEREEEFNFLLGKNDILKQVTEQCDACARVNASRLKLPPGNRVRGYRPGTHWEIDFTEIKPGKYGYKYLLVFVDTFSGWVEAFPTKHETAKIVTKKLLEEIFPRYGMPQLIYRPSN", "length": 393, "header": "tr|A0A9J7HFQ5-1|A0A9J7HFQ5_CRIGR Isoform 1 of Uncharacterized protein LOC113839062 OS=Cricetulus griseus OX=10029 GN=LOC113839062 PE=4 SV=1 CANONICAL=A0A9J7HFQ5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [], "pathway": [ { "id": "cge:113839062", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113839062", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "RNA-directed DNA polymerase activity", "id": "GO:0003964", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003964", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HFQ5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFQ5" } ], "pmid": "" }, { "name": "nucleic acid binding", "id": "GO:0003676", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003676", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HFQ5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFQ5" } ], "pmid": "" }, { "name": "RNA-DNA hybrid ribonuclease activity", "id": "GO:0004523", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004523", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HFQ5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFQ5" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "DNA integration", "id": "GO:0015074", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0015074", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HFQ5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFQ5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 308, "end_pos": 310, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7HFQ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFQ5" }, { "id": "PS50994", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50994" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Integrase catalytic", "eco_id": "ECO_0000259", "start_pos": 321, "end_pos": 393, "start_aa": "Arg", "end_aa": "Asn", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7HFQ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFQ5" }, { "id": "PS50879", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50879" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "RNase H type-1", "eco_id": "ECO_0000259", "start_pos": 53, "end_pos": 199, "start_aa": "Pro", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 308, "end_pos": 310 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "uniprot_canonical_ac": "A0A9J7HFR3-1", "uniprot_ac": "A0A9J7HFR3", "uniprot_id": "A0A9J7HFR3_CRIGR", "mass": { "chemical_mass": 48452.0, "monoisotopic_mass": 48452.0 }, "refseq": { "ac": "XP_035309544", "name": "zinc finger protein 431-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309544" }, "gene_names": [ { "name": "LOC113838052", "type": "recommended", "evidence": [ { "id": "A0A9J7HFR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFR3" } ] }, { "name": "LOC113838052", "type": "synonym", "evidence": [ { "id": "XP_035309544", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309544" } ] } ], "protein_names": [ { "name": "Zinc finger protein 431-like", "type": "synonym", "evidence": [ { "id": "A0A9J7HFR3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFR3/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 431-like", "type": "synonym", "evidence": [ { "id": "XP_035309544", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309544" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276808.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035309544", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309544" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HFR3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFR3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113838052", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFR3", "locus": {} } ], "crossref": [ { "id": "A0A9J7HFR3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HFR3", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "113838052", "url": "https://www.ncbi.nlm.nih.gov/gene/113838052", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050717", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050717", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113838052", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113838052", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HFR3", "url": "https://www.orthodb.org/?gene=A0A9J7HFR3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14196", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14196", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14196:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14196:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13465", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13465", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035309544", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309544", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HFR3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFR3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HFR3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFR3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSELMMLKIAMKYKDVHIDFTWEEWTLLDSSQKNLYKDVMLETYENLNDIGYSWEDNIEEHCASSKRHDRHERRPTGENSSVYTQCDKAFENNSYLQSYERKHTGEKSYECNQCAKAFAYHSYLLIHQRRHRGEKTYECNQCGKAFSYHSTLQMHKRTHTGEKPYECSQCGKAFAQQRYLQMHKRTHTGEKPYECNQCGKAFSRHSHLHMHKRTHTGEKPYECNECGKTFSRHTNLQMHKRTHTGEKPYECNQCGKAFSQDSTLQSHKRTHTGEKPYECNQCGKAFSHQCTLQSHKRSHTGEKPHECNQCGKAFAHDSTLQSHKRTHTGEKRYECNQCGKAFSRHTTLQIHKRTHTGEKPYECNQCGKAFSHQCTLQSHKRSHTGEKPYECNQCGKVFSHHSSLQIHKRTHNG", "length": 413, "header": "tr|A0A9J7HFR3-1|A0A9J7HFR3_CRIGR Isoform 1 of Zinc finger protein 431-like OS=Cricetulus griseus OX=10029 GN=LOC113838052 PE=3 SV=1 CANONICAL=A0A9J7HFR3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HFR3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFR3/entry#A0A9J7HFR3-1", "sequence": { "sequence": "MSELMMLKIAMKYKDVHIDFTWEEWTLLDSSQKNLYKDVMLETYENLNDIGYSWEDNIEEHCASSKRHDRHERRPTGENSSVYTQCDKAFENNSYLQSYERKHTGEKSYECNQCAKAFAYHSYLLIHQRRHRGEKTYECNQCGKAFSYHSTLQMHKRTHTGEKPYECSQCGKAFAQQRYLQMHKRTHTGEKPYECNQCGKAFSRHSHLHMHKRTHTGEKPYECNECGKTFSRHTNLQMHKRTHTGEKPYECNQCGKAFSQDSTLQSHKRTHTGEKPYECNQCGKAFSHQCTLQSHKRSHTGEKPHECNQCGKAFAHDSTLQSHKRTHTGEKRYECNQCGKAFSRHTTLQIHKRTHTGEKPYECNQCGKAFSHQCTLQSHKRSHTGEKPYECNQCGKVFSHHSSLQIHKRTHNG", "length": 413, "header": "tr|A0A9J7HFR3-1|A0A9J7HFR3_CRIGR Isoform 1 of Zinc finger protein 431-like OS=Cricetulus griseus OX=10029 GN=LOC113838052 PE=3 SV=1 CANONICAL=A0A9J7HFR3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [], "pathway": [ { "id": "cge:113838052", "name": "", "url": 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"MQLDVALTFNKKEPQRSFMFDIITNERTFQLVTDTEADMNRWVQSICHICGFSQTKESTDTLRKLSSVNHSLCSSPAEFSSSSQHLLQTRRSSALSHSIQPTVSSHIQPALSTSTPPEYQHSHQCISQRTENARSATFSQSTRQESDTATQNLAQGNRHGISGVSRQVHGIYSLPKPSRQFKDHAFDIPRSHLKGSLTVSEADNEDVYTFKVTSRNLCQEFGDLLVDSAIAPPPQHPKMPWCGNPLQRPPVNDYKYPRRGVATAYWSAKSPKRTIMGRSDSDNSDDNCVPINPGSSTLQALEQTGDNSHSAYIPMNTVPHHFDPLGHPSTPLPIHGVSSREREIQPPPINRNLNSGPKAKPPPLDLRNNTVINELPFKSPVTKSWSSQYCHSISTQNITNTGSRDREENYVAKQNSVSSSPVPSGTNNPALKKNTSNENYITLDFQPVSLSPHDKPSTSSVTSDEKVKYVQRD", "length": 473, "header": "tr|A0A9J7HFT3-1|A0A9J7HFT3_CRIGR Isoform 1 of GRB2-associated-binding protein 2-like OS=Cricetulus griseus OX=10029 GN=LOC113838104 PE=3 SV=1 CANONICAL=A0A9J7HFT3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HFT3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFT3/entry#A0A9J7HFT3-1", "sequence": { "sequence": "MQLDVALTFNKKEPQRSFMFDIITNERTFQLVTDTEADMNRWVQSICHICGFSQTKESTDTLRKLSSVNHSLCSSPAEFSSSSQHLLQTRRSSALSHSIQPTVSSHIQPALSTSTPPEYQHSHQCISQRTENARSATFSQSTRQESDTATQNLAQGNRHGISGVSRQVHGIYSLPKPSRQFKDHAFDIPRSHLKGSLTVSEADNEDVYTFKVTSRNLCQEFGDLLVDSAIAPPPQHPKMPWCGNPLQRPPVNDYKYPRRGVATAYWSAKSPKRTIMGRSDSDNSDDNCVPINPGSSTLQALEQTGDNSHSAYIPMNTVPHHFDPLGHPSTPLPIHGVSSREREIQPPPINRNLNSGPKAKPPPLDLRNNTVINELPFKSPVTKSWSSQYCHSISTQNITNTGSRDREENYVAKQNSVSSSPVPSGTNNPALKKNTSNENYITLDFQPVSLSPHDKPSTSSVTSDEKVKYVQRD", "length": 473, "header": "tr|A0A9J7HFT3-1|A0A9J7HFT3_CRIGR Isoform 1 of GRB2-associated-binding protein 2-like OS=Cricetulus griseus OX=10029 GN=LOC113838104 PE=3 SV=1 CANONICAL=A0A9J7HFT3-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 102, "start_aa": "Thr", "end_pos": 102, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr102", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [], "pathway": [ { "id": "cge:113838104", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113838104", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HFT3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFT3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "transmembrane receptor protein tyrosine kinase adaptor activity", "id": "GO:0005068", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005068", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HFT3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFT3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 368, "end_pos": 370, "annotation": "n_glycosylation_sequon" }, { "start_pos": 397, "end_pos": 399, "annotation": "n_glycosylation_sequon" }, { "start_pos": 434, "end_pos": 436, "annotation": "n_glycosylation_sequon" }, { "start_pos": 69, "end_pos": 71, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7HFT3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFT3" }, { "id": "PS50003", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50003" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PH", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 51, "start_aa": "Met", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 102 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 368, "end_pos": 370 }, { "start_pos": 397, "end_pos": 399 }, { "start_pos": 434, "end_pos": 436 }, { "start_pos": 69, "end_pos": 71 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "uniprot_canonical_ac": "A0A9J7HFV0-1", "uniprot_ac": "A0A9J7HFV0", "uniprot_id": "A0A9J7HFV0_CRIGR", "mass": { "chemical_mass": 74255.0, "monoisotopic_mass": 74255.0 }, "refseq": { "ac": "XP_035309713", "name": "la-related protein 4-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309713" }, "gene_names": [ { "name": "LOC113839080", "type": "recommended", "evidence": [ { "id": "A0A9J7HFV0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFV0" } ] }, { "name": "LOC113839080", "type": "synonym", "evidence": [ { "id": "XP_035309713", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309713" } ] } ], "protein_names": [ { "name": "La-related protein 4-like", "type": "synonym", "evidence": [ { "id": "A0A9J7HFV0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFV0/entry#names_and_taxonomy" } ] }, { "name": "la-related protein 4-like", "type": "synonym", "evidence": [ { "id": "XP_035309713", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309713" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023277032.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035309713", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309713" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HFV0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFV0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113839080", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFV0", "locus": {} } ], "crossref": [ { "id": "A0A9J7HFV0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HFV0", "database": "AlphaFoldDB", "categories": [] }, { "id": "113839080", "url": "https://www.ncbi.nlm.nih.gov/gene/113839080", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006630", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006630", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012677", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012677", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036388", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036388", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036390", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036390", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045180", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045180", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058699", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058699", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113839080", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113839080", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HFV0", "url": "https://www.orthodb.org/?gene=A0A9J7HFV0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22792", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22792", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22792:SF48", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22792:SF48", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05383", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05383", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF26088", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF26088", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035309713", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309713", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HFV0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFV0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HFV0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFV0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MYSLAWESTRNTSEMEEKDDGMISGPEVLHYQINDESGESSSTISTGFLKECLKKQLEFCFSRENLSKDLYLTSQMDGNQFIPISTVANLEEIKKLTTDQNLILEVLRSSPLVQVDEKGEKVRPSHKRCIVILREIPETTPVEEVKALFKNGKCPKVISCEFAQNSTWYVTFQSDTDAQQAFQYLREEVKTFQGKPIMARIKATAIFLAKNDYPLMDSSMYTQPIQMPTQYPSPVFMQPGYYTHQQYPGYSTVPQSWFPSPAAPYYVTLPAPFQNGSFVNGFSLLGSYETNDTAINICSSFQNNPWQPHFRSSRGSEHSTEGSVSLGDGQLSRSSSSNFHSEQHNPTVTGNQKQTYLSKNAPILEMDQNRDFGRGRRTLFRGGRQREADKIERPQPSTTEAKVSAPKFDLVATNVPPLSGSSSRMRDELMLENRMSDVTKDVKKEKDTEEVSVSFPVHSEDEQKDFASAQQLSLNPSPSCKAELPAVSTTQQEKDQREHSSLREDVINQMTVPVSSPAIAKPSRPHTASTCSSWVNTHTAVSLQEPRKLTYAEVCLKPPKEPASVPVQPLREMPTNVAIPTRNKENGVPKKPVEKTHEKPETRSRKYYSGFRGNTIPRGAAVKIREQRHQFSHRTTPQGVSQSKGKERCVPPDHQSKSKM", "length": 660, "header": "tr|A0A9J7HFV0-1|A0A9J7HFV0_CRIGR Isoform 1 of La-related protein 4-like OS=Cricetulus griseus OX=10029 GN=LOC113839080 PE=4 SV=1 CANONICAL=A0A9J7HFV0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HFV0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFV0/entry#A0A9J7HFV0-1", "sequence": { "sequence": "MYSLAWESTRNTSEMEEKDDGMISGPEVLHYQINDESGESSSTISTGFLKECLKKQLEFCFSRENLSKDLYLTSQMDGNQFIPISTVANLEEIKKLTTDQNLILEVLRSSPLVQVDEKGEKVRPSHKRCIVILREIPETTPVEEVKALFKNGKCPKVISCEFAQNSTWYVTFQSDTDAQQAFQYLREEVKTFQGKPIMARIKATAIFLAKNDYPLMDSSMYTQPIQMPTQYPSPVFMQPGYYTHQQYPGYSTVPQSWFPSPAAPYYVTLPAPFQNGSFVNGFSLLGSYETNDTAINICSSFQNNPWQPHFRSSRGSEHSTEGSVSLGDGQLSRSSSSNFHSEQHNPTVTGNQKQTYLSKNAPILEMDQNRDFGRGRRTLFRGGRQREADKIERPQPSTTEAKVSAPKFDLVATNVPPLSGSSSRMRDELMLENRMSDVTKDVKKEKDTEEVSVSFPVHSEDEQKDFASAQQLSLNPSPSCKAELPAVSTTQQEKDQREHSSLREDVINQMTVPVSSPAIAKPSRPHTASTCSSWVNTHTAVSLQEPRKLTYAEVCLKPPKEPASVPVQPLREMPTNVAIPTRNKENGVPKKPVEKTHEKPETRSRKYYSGFRGNTIPRGAAVKIREQRHQFSHRTTPQGVSQSKGKERCVPPDHQSKSKM", "length": 660, "header": "tr|A0A9J7HFV0-1|A0A9J7HFV0_CRIGR Isoform 1 of La-related protein 4-like OS=Cricetulus griseus OX=10029 GN=LOC113839080 PE=4 SV=1 CANONICAL=A0A9J7HFV0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [], "pathway": [ { "id": "cge:113839080", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113839080", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HFV0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFV0" } ], "pmid": "" }, { "name": "cytoplasmic stress granule", "id": "GO:0010494", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010494", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HFV0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFV0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "positive regulation of translation", "id": "GO:0045727", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045727", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HFV0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFV0" 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differentiation-associated protein isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035308973", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308973" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 4% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035308973", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308973" } ] }, { "annotation": "Required for melanocyte differentiation.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HFX3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFX3#function" }, { "database": "UniProtKB", "id": "ARBA00059627", "url": "https://www.uniprot.org/uniprotkb/ARBA00059627#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HFX3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFX3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Lrmda", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFX3", "locus": {} } ], "crossref": [ { "id": "A0A9J7HFX3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HFX3", "database": "AlphaFoldDB", "categories": [] }, { "id": "100764434", "url": "https://www.ncbi.nlm.nih.gov/gene/100764434", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001611", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001611", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032675", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032675", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043313", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043313", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100764434", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764434", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HFX3", "url": "https://www.orthodb.org/?gene=A0A9J7HFX3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46282", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46282", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46282:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46282:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14580", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14580", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035308973", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035308973", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HFX3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFX3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HFX3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFX3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDDGDTQSQAFSMLQSLEGLSAFRSLEELILDNNLFGDDLVLPRLPHLHTLTLNKNQITDLEYLLDHLAKVTPALEYLSLLGNVACPNELVSLEKDEEDYKRYRCFVLHKLPNLKFLDAQKVTRQEREEALVRGAFMKVVKPKASSGVEAASPESHLRYTPLPSASRELTSHRGVLGKGRYFYYGRNSEGNRFIRDDQL", "length": 199, "header": "tr|A0A9J7HFX3-1|A0A9J7HFX3_CRIGR Isoform 1 of Leucine-rich melanocyte differentiation-associated protein OS=Cricetulus griseus OX=10029 GN=Lrmda PE=4 SV=1 CANONICAL=A0A9J7HFX3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HFX3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFX3/entry#A0A9J7HFX3-1", "sequence": { "sequence": "MDDGDTQSQAFSMLQSLEGLSAFRSLEELILDNNLFGDDLVLPRLPHLHTLTLNKNQITDLEYLLDHLAKVTPALEYLSLLGNVACPNELVSLEKDEEDYKRYRCFVLHKLPNLKFLDAQKVTRQEREEALVRGAFMKVVKPKASSGVEAASPESHLRYTPLPSASRELTSHRGVLGKGRYFYYGRNSEGNRFIRDDQL", "length": 199, "header": "tr|A0A9J7HFX3-1|A0A9J7HFX3_CRIGR Isoform 1 of Leucine-rich melanocyte differentiation-associated protein OS=Cricetulus griseus OX=10029 GN=Lrmda PE=4 SV=1 CANONICAL=A0A9J7HFX3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: incomplete on the amino end.", "evidence": [ { "database": "RefSeq", "id": "XP_035309682", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309682" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HFZ1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFZ1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113838990", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HFZ1", "locus": {} } ], "crossref": [ { "id": "A0A9J7HFZ1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HFZ1", "database": "AlphaFoldDB", "categories": [] }, { "id": "113838990", "url": "https://www.ncbi.nlm.nih.gov/gene/113838990", "database": "GeneID", "categories": [ "Genome Annotation" ] 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Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 32% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023277175.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035309745", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309745" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HG29", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HG29" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113838836", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HG29", "locus": {} } ], "crossref": [ { "id": "A0A9J7HG29", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HG29", "database": "AlphaFoldDB", "categories": [] }, { "id": "113838836", "url": "https://www.ncbi.nlm.nih.gov/gene/113838836", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": 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"protein_names": [ { "name": "LOW QUALITY PROTEIN: GRB2-associated-binding protein 2-like", "type": "synonym", "evidence": [ { "id": "XP_035309835", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309835" }, { "id": "A0A9J7HG78", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HG78/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 12% of CDS bases frameshifts :: corrected 2 indels ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023277438.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: incomplete on the carboxy end.", "evidence": [ { "database": "RefSeq", "id": "XP_035309835", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309835" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HG78", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HG78" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113837961", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HG78", "locus": {} } ], "crossref": [ { "id": "113837961", "url": "https://www.ncbi.nlm.nih.gov/gene/113837961", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001849", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046355", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046355", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113837961", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113837961", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HG78", "url": "https://www.orthodb.org/?gene=A0A9J7HG78", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45960", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45960", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45960:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45960:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00169", "url": 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"MLRKLLKKHGKSSSEESLLFELCTSSQLTQQPMPLSTPACCSLQSSGNNVVCTGWLGKLTPEKRLRQYAWKKRWFILRSGKMSGDPDVLEYYKNEHSKKPLRIINLNFCMQLDVALTFNKKEPQRSFLFDIITNERTFQLVTDTEADMNRWVQSICQICGFSQTKESTDALRNLSSVNHSLCSSPAEFSSSSQHLLRTRRSSALSHSSQPTVSSHIHPALSTSTPQEYQHSHQCISQRTENARSANFSQITRHKSDTARQKLAQDNRHCICGVSGQVHGFYSLPKPSRQFKEHAFGLHRSHPMENLTVSEADNEDVYTFKVPSNTLCGEFGDLLVDSAIPTPPRHPRTPQWGRPQQRPPVNDYKYPAQGAETICLATKSPKRTIMGQSDSGSSDDNGVPMNPDSSTLLEMEQTGDNSHSAYIPMNTVPHHFVTQGYPSTALPIHNVSGQEREIQPPPVNHNLKPGREAKLPPFDLRNNDVINELPFKSPVTKSWSSQDCHSTSTKNITNTDFRDSEEYYVLMQNPMSSSPVPSGTNYPALXKSSGNENHIALDFYPVSLSPHCRPSPSSVTSDEKVKYVQIDKXETQALQKTIQKWTKIQQSSRPSKDA", "length": 609, "header": "tr|A0A9J7HG78-1|A0A9J7HG78_CRIGR Isoform 1 of LOW QUALITY PROTEIN: GRB2-associated-binding protein 2-like OS=Cricetulus griseus OX=10029 GN=LOC113837961 PE=3 SV=1 CANONICAL=A0A9J7HG78-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HG78-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HG78/entry#A0A9J7HG78-1", "sequence": { "sequence": "MLRKLLKKHGKSSSEESLLFELCTSSQLTQQPMPLSTPACCSLQSSGNNVVCTGWLGKLTPEKRLRQYAWKKRWFILRSGKMSGDPDVLEYYKNEHSKKPLRIINLNFCMQLDVALTFNKKEPQRSFLFDIITNERTFQLVTDTEADMNRWVQSICQICGFSQTKESTDALRNLSSVNHSLCSSPAEFSSSSQHLLRTRRSSALSHSSQPTVSSHIHPALSTSTPQEYQHSHQCISQRTENARSANFSQITRHKSDTARQKLAQDNRHCICGVSGQVHGFYSLPKPSRQFKEHAFGLHRSHPMENLTVSEADNEDVYTFKVPSNTLCGEFGDLLVDSAIPTPPRHPRTPQWGRPQQRPPVNDYKYPAQGAETICLATKSPKRTIMGQSDSGSSDDNGVPMNPDSSTLLEMEQTGDNSHSAYIPMNTVPHHFVTQGYPSTALPIHNVSGQEREIQPPPVNHNLKPGREAKLPPFDLRNNDVINELPFKSPVTKSWSSQDCHSTSTKNITNTDFRDSEEYYVLMQNPMSSSPVPSGTNYPALXKSSGNENHIALDFYPVSLSPHCRPSPSSVTSDEKVKYVQIDKXETQALQKTIQKWTKIQQSSRPSKDA", "length": 609, "header": "tr|A0A9J7HG78-1|A0A9J7HG78_CRIGR Isoform 1 of LOW QUALITY PROTEIN: GRB2-associated-binding protein 2-like OS=Cricetulus griseus OX=10029 GN=LOC113837961 PE=3 SV=1 CANONICAL=A0A9J7HG78-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [], "pathway": [ { "id": "cge:113837961", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113837961", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HG78", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HG78" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "transmembrane receptor protein tyrosine kinase adaptor activity", "id": "GO:0005068", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005068", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HG78", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HG78" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 173, "end_pos": 175, "annotation": "n_glycosylation_sequon" }, { "start_pos": 178, "end_pos": 180, "annotation": "n_glycosylation_sequon" }, { 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"sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 173, "end_pos": 175 }, { "start_pos": 178, "end_pos": 180 }, { "start_pos": 246, "end_pos": 248 }, { "start_pos": 305, "end_pos": 307 }, { "start_pos": 445, "end_pos": 447 }, { "start_pos": 506, "end_pos": 508 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", 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0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "uniprot_canonical_ac": "A0A9J7HGB1-1", "uniprot_ac": "A0A9J7HGB1", "uniprot_id": "A0A9J7HGB1_CRIGR", "mass": { "chemical_mass": 96857.0, "monoisotopic_mass": 96857.0 }, "refseq": { "ac": "XP_035309225", "name": "paladin isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309225" }, "gene_names": [ { "name": "Pald1", "type": "recommended", "evidence": [ { "id": "A0A9J7HGB1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HGB1" } ] }, { "name": "Pald1", "type": "synonym", "evidence": [ { "id": "XP_035309225", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309225" } ] } ], "protein_names": [ { "name": "Paladin", "type": "recommended", "evidence": [ { "id": "A0A9J7HGB1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HGB1/entry#names_and_taxonomy" } ] }, { "name": "paladin isoform X2", "type": "synonym", "evidence": [ { "id": "XP_035309225", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309225" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035309225", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309225" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HGB1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HGB1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Pald1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HGB1", "locus": {} } ], "crossref": [ { "id": "A0A9J7HGB1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HGB1", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd17659", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17659", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd17660", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd17660", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100762022", "url": "https://www.ncbi.nlm.nih.gov/gene/100762022", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003595", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003595", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029021", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029021", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050561", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050561", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100762022", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762022", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HGB1", "url": "https://www.orthodb.org/?gene=A0A9J7HGB1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23339", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23339", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14566", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14566", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035309225", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309225", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HGB1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HGB1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HGB1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HGB1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGTTASTAQQTVSAGTSLEGLQGSSTMDGRHSLSVQPFHTTSLHNSKAKSIIPNKVAPVVITYNCKEEFQIHDELLKAHYRMGRLSDATPEHYLVQGRYFLVRDVTKKMDMLGTLGSCGAPNFRQVPGGLPVFGMGQPSLLGFRKVLQKLQKDGHKECIIFCVREEPVLFLRAEEDFVSYTPRDRESLHENLRSPGLGVKAESLELAIRKEIHDFAQLRENTYHVYHNTEDLRGEPHTVAIRGEDDVHVTEEVYKRPLFLQPTYRYHRLPLPEQGAPLEAQFDAFVSVLRETPGLLRLRDNHGLPPALLFSCQSGVGRTNVGMVLGTLVLFHYRRTSSQPEAASLLTKPLPMEQFQVIQGFIRMVPQGKKMVEEVDRAVTACAELHDLKEEVLKNQRKLEGIRPESPVQERDSQHAVQQRALWSLELYFYLVLFNYYLHEQYPLAFALSFSRWLCTHPELYRLPVMLSPVGPMTPGDLIAKGSLEADDLVSPDELSTVREMDVANFRRVPRMPIYGTAQPSAKALGSILAYLSDAKRKLRQVVWINLREEIVLECDGHIHSLWPPGPTLAPEQLEALEAQLKTHLSAPAPDTKKNPTTPRFQKCLTTQEVFSQHQGSCLGLTYHRIPVPDFCAPREEDFDRLFEALRAALTKDPGTGFVFSCLSGQGRTTTAMVVAVLACWHIGGCPEVGEEELVSVPDAKFTKGEFQVVMKVVQLLPDGHHVKKEVDAALDTVSETMTPMHYHLREIIICTYRQAKATKEAQEARRLQLRSLQYLERYIYLVLFNAYLRLEKAGSWQTPFSTWMREVATKAGIYEILNQLGFPELESMEDQPLSGLRHRWQEQSQDPEPCDAGDFL", "length": 857, "header": "tr|A0A9J7HGB1-1|A0A9J7HGB1_CRIGR Isoform 1 of Paladin OS=Cricetulus griseus OX=10029 GN=Pald1 PE=3 SV=1 CANONICAL=A0A9J7HGB1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HGB1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HGB1/entry#A0A9J7HGB1-1", "sequence": { "sequence": "MGTTASTAQQTVSAGTSLEGLQGSSTMDGRHSLSVQPFHTTSLHNSKAKSIIPNKVAPVVITYNCKEEFQIHDELLKAHYRMGRLSDATPEHYLVQGRYFLVRDVTKKMDMLGTLGSCGAPNFRQVPGGLPVFGMGQPSLLGFRKVLQKLQKDGHKECIIFCVREEPVLFLRAEEDFVSYTPRDRESLHENLRSPGLGVKAESLELAIRKEIHDFAQLRENTYHVYHNTEDLRGEPHTVAIRGEDDVHVTEEVYKRPLFLQPTYRYHRLPLPEQGAPLEAQFDAFVSVLRETPGLLRLRDNHGLPPALLFSCQSGVGRTNVGMVLGTLVLFHYRRTSSQPEAASLLTKPLPMEQFQVIQGFIRMVPQGKKMVEEVDRAVTACAELHDLKEEVLKNQRKLEGIRPESPVQERDSQHAVQQRALWSLELYFYLVLFNYYLHEQYPLAFALSFSRWLCTHPELYRLPVMLSPVGPMTPGDLIAKGSLEADDLVSPDELSTVREMDVANFRRVPRMPIYGTAQPSAKALGSILAYLSDAKRKLRQVVWINLREEIVLECDGHIHSLWPPGPTLAPEQLEALEAQLKTHLSAPAPDTKKNPTTPRFQKCLTTQEVFSQHQGSCLGLTYHRIPVPDFCAPREEDFDRLFEALRAALTKDPGTGFVFSCLSGQGRTTTAMVVAVLACWHIGGCPEVGEEELVSVPDAKFTKGEFQVVMKVVQLLPDGHHVKKEVDAALDTVSETMTPMHYHLREIIICTYRQAKATKEAQEARRLQLRSLQYLERYIYLVLFNAYLRLEKAGSWQTPFSTWMREVATKAGIYEILNQLGFPELESMEDQPLSGLRHRWQEQSQDPEPCDAGDFL", "length": 857, "header": "tr|A0A9J7HGB1-1|A0A9J7HGB1_CRIGR Isoform 1 of Paladin OS=Cricetulus griseus OX=10029 GN=Pald1 PE=3 SV=1 CANONICAL=A0A9J7HGB1-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 568, "start_aa": "Thr", "end_pos": 568, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr568", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HGB1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HGB1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HGB1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HGB1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100762022", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762022", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HGB1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HGB1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7HGB1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HGB1" }, { "id": "SM00404", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00404" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Protein-tyrosine phosphatase catalytic", "eco_id": "ECO_0000259", "start_pos": 262, "end_pos": 384, "start_aa": "Pro", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 568 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7HGI5-1", "uniprot_ac": "A0A9J7HGI5", "uniprot_id": "A0A9J7HGI5_CRIGR", "mass": { "chemical_mass": 121966.0, "monoisotopic_mass": 121966.0 }, "refseq": { "ac": "XP_035309340", "name": "importin-4 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309340" }, "gene_names": [ { "name": "Ipo4", "type": "recommended", "evidence": [ { "id": "A0A9J7HGI5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HGI5" } ] }, { "name": "Ipo4", "type": "synonym", "evidence": [ { "id": "XP_035309340", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309340" } ] } ], "protein_names": [ { "name": "Importin-4 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7HGI5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HGI5/entry#names_and_taxonomy" } ] }, { "name": "importin-4 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_035309340", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309340" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035309340", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309340" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HGI5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HGI5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ipo4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HGI5", "locus": {} } ], "crossref": [ { "id": "A0A9J7HGI5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HGI5", "database": "AlphaFoldDB", "categories": [] }, { "id": "100760098", "url": "https://www.ncbi.nlm.nih.gov/gene/100760098", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001494", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001494", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034085", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034085", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040122", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040122", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057672", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057672", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR058584", "url": "https://www.ebi.ac.uk/interpro/entry/IPR058584", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100760098", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760098", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HGI5", "url": "https://www.orthodb.org/?gene=A0A9J7HGI5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10527", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10527", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03810", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03810", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13513", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13513", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25574", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25574", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25780", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25780", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035309340", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309340", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2LC31", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LC31", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LC31-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LC31-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HGI5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HGI5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HGI5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HGI5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEPAELEQILKELLLPDTERIRRATEQLQTALRDPAALPTLCDLLASATDPQIRQFAAVLTRRRLNSRWRRLAPEQRESLKNLVLTALQRETQHCVSVSLAQLAATIFRKEGLEAWPQFMQLLQHSTHSASSSEKEVGLLLLSVVVSSQPESFLAHRRELLQLLIDTLGEVGAPGLLFYSLRTVTALAPFLRTDDVPLARMLVPKLIMAVRTLIPIDEVKACESLEALDELLESELPIITPHIAEVLTFCLEVAKNVALGEAIRVRVLCCLTFLVKVKSKALLKNRLLPPLLHALFPVMAAEPPMGQLDPEDQDSDDDDLEIGLMGETPKHFAVQVVDMLALHLPPEKLCPHVMPMLEEALRSELPYQRKAGFLVLAVLSDGAGDHIRQRLLSPLLQIVCKGLGDPSQVVRNAALFALGQFSDNLQPHISSYSEEVMPLLLAYLKSVPTGNTHHLAKACYALENFVENLGPKVQPYIPELMECMLQPLRNPSKPRTKELAVSAIGAIATAAQDSLLPYFPTIMELIRGFLLTAHEDLQLVQIQSLETLGVLARAMGESMRPLAEECCQLGLGLCSHIDDPDLRRCTYSLFAALSGLMGDGLAPYLPQITTLMLLSLRSTEGIVPQYDGISSFLLFDEESEGEEEEDLVDDDMEEEEDSEISGYSVENAFFDEKEDTCTALGEISMNASVAFLPYMDNVFDEVLKLLECPHLSVRKAAHEALGQFCCSLHKACQSNPSEPNKTALQSALARVVPSYMQAVKGEKERPVVMAVLEALTGVLRTCGAVTLYPSGRLSELCSMLKAVLQKKTACQNTEEEDEDEDDDQAEYDAMLLEHAGEAIPALAAAAGGQAFAPFFASFLPLLLCKMKQSCTVAEKSFAVGTLAESIQGLGPASVQFVSRLFPVLLNTAREADPEVRSNAIFGLGLLAEHGGCPAQDHFPKLLGLLLPLLAREHHDRVRDNICGALARLLMASPARKADPQVLATLLHALPLKEDMEEWITIGCLFNFLHQNNPEQLSFRAASLPGPNHPLYAPGLQAVTAGVDESFPQLADVAPELLRICSLILPDNRIPADTKAALLLLLTFLAKQHADNFHSALGSLSADKAQELQALLGLT", "length": 1114, "header": "tr|A0A9J7HGI5-1|A0A9J7HGI5_CRIGR Isoform 1 of Importin-4 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ipo4 PE=4 SV=1 CANONICAL=A0A9J7HGI5-1" }, "isoforms": [ { "isoform_ac": "A0A8C2LC31-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HGI5/entry#A0A8C2LC31-1", "sequence": { "sequence": "MEPAELEQILKELLLPDTERIRRATEQLQTALRDPAALPTLCDLLASATDPQIRQFAAVLTRRRLNSRWRRLAPEQRESLKNLVLTALQRETQHCVSVSLAQLAATIFRKEGLEAWPQFMQLLQHSTHSASSSEKEVGLLLLSVVVSSQPESFLAHRRELLQLLIDTLGEVGAPGLLFYSLRTVTALAPFLRTDDVPLARMLVPKLIMAVRTLIPIDEVKACESLEALDELLESELPIITPHIAEVLTFCLEVAKNVALGEAIRVRVLCCLTFLVKVKSKALLKNRLLPPLLHALFPVMAAEPPMGQLDPEDQDSDDDDLEIGLMGETPKHFAVQVVDMLALHLPPEKLCPHVMPMLEEALRSELPYQRKAGFLVLAVLSDGAGDHIRQRLLSPLLQIVCKGLGDPSQVVRNAALFALGQFSDNLQPHISSYSEEVMPLLLAYLKSVPTGNTHHLAKACYALENFVENLGPKVQPYIPELMECMLQPLRNPSKPRTKELAVSAIGAIATAAQDSLLPYFPTIMELIRGFLLTAHEDLQLVQIQSLETLGVLARAMGESMRPLAEECCQLGLGLCSHIDDPDLRRCTYSLFAALSGLMGDGLAPYLPQITTLMLLSLRSTEGIVPQYDGISSFLLFDEESEGEEEEDLVDDDMEEEEDSEISGYSVENAFFDEKEDTCTALGEISMNASVAFLPYMDNVFDEVLKLLECPHLSVRKAAHEALGQFCCSLHKACQSNPSEPNKTALQSALARVVPSYMQAVKGEKERPVVMAVLEALTGVLRTCGAVTLYPSGRLSELCSMLKAVLQKKTACQNTEEEDEDEDDDQAEYDAMLLEHAGEAIPALAAAAGGQAFAPFFASFLPLLLCKMKQSCTVAEKSFAVGTLAESIQGLGPASVQFVSRLFPVLLNTAREADPEVRSNAIFGLGLLAEHGGCPAQDHFPKLLGLLLPLLAREHHDRVRDNICGALARLLMASPARKADPQVLATLLHALPLKEDMEEWITIGCLFNFLHQNNPEQLADVAPELLRICSLILPDNRIPADTKAALLLLLTFLAKQHADNFHSALGSLSADKAQELQALLGLT", "length": 1081, "header": "tr|A0A8C2LC31-1|A0A8C2LC31_CRIGR Computationally mapped isoform of Importin-4 isoform X2 OS=Cricetulus griseus OX=10029 GN=Ipo4 PE=4 SV=1 CANONICAL=A0A9J7HGI5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7HGI5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HGI5/entry#A0A9J7HGI5-1", "sequence": { "sequence": "MEPAELEQILKELLLPDTERIRRATEQLQTALRDPAALPTLCDLLASATDPQIRQFAAVLTRRRLNSRWRRLAPEQRESLKNLVLTALQRETQHCVSVSLAQLAATIFRKEGLEAWPQFMQLLQHSTHSASSSEKEVGLLLLSVVVSSQPESFLAHRRELLQLLIDTLGEVGAPGLLFYSLRTVTALAPFLRTDDVPLARMLVPKLIMAVRTLIPIDEVKACESLEALDELLESELPIITPHIAEVLTFCLEVAKNVALGEAIRVRVLCCLTFLVKVKSKALLKNRLLPPLLHALFPVMAAEPPMGQLDPEDQDSDDDDLEIGLMGETPKHFAVQVVDMLALHLPPEKLCPHVMPMLEEALRSELPYQRKAGFLVLAVLSDGAGDHIRQRLLSPLLQIVCKGLGDPSQVVRNAALFALGQFSDNLQPHISSYSEEVMPLLLAYLKSVPTGNTHHLAKACYALENFVENLGPKVQPYIPELMECMLQPLRNPSKPRTKELAVSAIGAIATAAQDSLLPYFPTIMELIRGFLLTAHEDLQLVQIQSLETLGVLARAMGESMRPLAEECCQLGLGLCSHIDDPDLRRCTYSLFAALSGLMGDGLAPYLPQITTLMLLSLRSTEGIVPQYDGISSFLLFDEESEGEEEEDLVDDDMEEEEDSEISGYSVENAFFDEKEDTCTALGEISMNASVAFLPYMDNVFDEVLKLLECPHLSVRKAAHEALGQFCCSLHKACQSNPSEPNKTALQSALARVVPSYMQAVKGEKERPVVMAVLEALTGVLRTCGAVTLYPSGRLSELCSMLKAVLQKKTACQNTEEEDEDEDDDQAEYDAMLLEHAGEAIPALAAAAGGQAFAPFFASFLPLLLCKMKQSCTVAEKSFAVGTLAESIQGLGPASVQFVSRLFPVLLNTAREADPEVRSNAIFGLGLLAEHGGCPAQDHFPKLLGLLLPLLAREHHDRVRDNICGALARLLMASPARKADPQVLATLLHALPLKEDMEEWITIGCLFNFLHQNNPEQLSFRAASLPGPNHPLYAPGLQAVTAGVDESFPQLADVAPELLRICSLILPDNRIPADTKAALLLLLTFLAKQHADNFHSALGSLSADKAQELQALLGLT", "length": 1114, "header": "tr|A0A9J7HGI5-1|A0A9J7HGI5_CRIGR Isoform 1 of Importin-4 isoform X1 OS=Cricetulus griseus OX=10029 GN=Ipo4 PE=4 SV=1 CANONICAL=A0A9J7HGI5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HGI5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HGI5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HGI5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HGI5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100760098", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760098", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HGI5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HGI5" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HGI5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HGI5" } ], "pmid": "" }, { "name": "chromatin", "id": "GO:0000785", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000785", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HGI5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HGI5" } ], "pmid": "" }, { "name": "protein-containing complex", "id": "GO:0032991", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032991", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HGI5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HGI5" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "small GTPase binding", "id": "GO:0031267", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031267", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HGI5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HGI5" } ], "pmid": "" }, { "name": "nuclear localization sequence binding", "id": "GO:0008139", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008139", "evidence": [ { 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"authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7HGP0-1", "uniprot_ac": "A0A9J7HGP0", "uniprot_id": "A0A9J7HGP0_CRIGR", "mass": { "chemical_mass": 39231.0, "monoisotopic_mass": 39231.0 }, "refseq": { "ac": "XP_035309438", "name": "LOW QUALITY PROTEIN: zinc finger protein 239-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309438" }, "gene_names": [ { "name": "LOC113837877", "type": "recommended", "evidence": [ { "id": "A0A9J7HGP0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HGP0" } ] }, { "name": "LOC113837877", "type": "synonym", "evidence": [ { "id": "XP_035309438", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309438" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: zinc finger protein 239-like", "type": "synonym", "evidence": [ { "id": "XP_035309438", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309438" }, { "id": "A0A9J7HGP0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HGP0/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 7% of CDS bases frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276808.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035309438", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309438" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HGP0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HGP0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113837877", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HGP0", "locus": {} } ], "crossref": [ { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "113837877", "url": "https://www.ncbi.nlm.nih.gov/gene/113837877", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050329", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050329", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113837877", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113837877", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HGP0", "url": "https://www.orthodb.org/?gene=A0A9J7HGP0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR19818", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19818", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19818:SF158", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19818:SF158", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13465", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13465", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035309438", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309438", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HGP0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HGP0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HGP0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HGP0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKYKDVHIYFTCEEWTLLDTSQKNLYKDVMLETYKNLNDIGIKEAKLERSLLYIHNVLKLLHITIIFEGKKEHIRERNPMNVSNVVKPLLVTVNFKCIEGHILGRNPMNVIXCGKAFSQQSTLQMHKRIHSGEKPYDCNQCGKAFSQHSHLQTHKRTHTGEKPYECNQCGKAFSHQSTLQMHKRTHTGQKPCECNQCGKAFASHSKLQIHTRTHTGEKPYECNQCGRAFAQRSHLQMHKRTHTGEKPYECNQCGKAFSQYTNLQSHKRTHTGEKPYECNQCGKAFSHHSALQSHKRRHTGEKPYECNHCGKAFTDLNQAALSLMDWLFQVIGGEPQDIES", "length": 340, "header": "tr|A0A9J7HGP0-1|A0A9J7HGP0_CRIGR Isoform 1 of LOW QUALITY PROTEIN: zinc finger protein 239-like OS=Cricetulus griseus OX=10029 GN=LOC113837877 PE=4 SV=1 CANONICAL=A0A9J7HGP0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HGP0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HGP0/entry#A0A9J7HGP0-1", "sequence": { "sequence": "MKYKDVHIYFTCEEWTLLDTSQKNLYKDVMLETYKNLNDIGIKEAKLERSLLYIHNVLKLLHITIIFEGKKEHIRERNPMNVSNVVKPLLVTVNFKCIEGHILGRNPMNVIXCGKAFSQQSTLQMHKRIHSGEKPYDCNQCGKAFSQHSHLQTHKRTHTGEKPYECNQCGKAFSHQSTLQMHKRTHTGQKPCECNQCGKAFASHSKLQIHTRTHTGEKPYECNQCGRAFAQRSHLQMHKRTHTGEKPYECNQCGKAFSQYTNLQSHKRTHTGEKPYECNQCGKAFSHHSALQSHKRRHTGEKPYECNHCGKAFTDLNQAALSLMDWLFQVIGGEPQDIES", "length": 340, "header": "tr|A0A9J7HGP0-1|A0A9J7HGP0_CRIGR Isoform 1 of LOW QUALITY PROTEIN: zinc finger protein 239-like OS=Cricetulus griseus OX=10029 GN=LOC113837877 PE=4 SV=1 CANONICAL=A0A9J7HGP0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [], "pathway": [ { "id": "cge:113837877", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113837877", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": 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This record is derived from a genomic sequence (NW_023276842.1) annotated using gene prediction method: Gnomon. 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"A0A9J7HGZ1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HGZ1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 141, "end_pos": 143, "annotation": "n_glycosylation_sequon" }, { "start_pos": 146, "end_pos": 148, "annotation": "n_glycosylation_sequon" }, { "start_pos": 446, "end_pos": 448, "annotation": "n_glycosylation_sequon" }, { "start_pos": 475, "end_pos": 477, "annotation": "n_glycosylation_sequon" }, { "start_pos": 642, "end_pos": 644, "annotation": "n_glycosylation_sequon" }, { "start_pos": 650, "end_pos": 652, "annotation": "n_glycosylation_sequon" }, { "start_pos": 675, "end_pos": 677, "annotation": "n_glycosylation_sequon" }, { "start_pos": 690, "end_pos": 692, "annotation": "n_glycosylation_sequon" }, { "start_pos": 730, "end_pos": 732, "annotation": "n_glycosylation_sequon" }, { "start_pos": 731, "end_pos": 733, "annotation": "n_glycosylation_sequon" }, { "start_pos": 738, "end_pos": 740, "annotation": "n_glycosylation_sequon" }, { 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"total", "count": 0 } ], "sort_fields": [] } ] }, { "uniprot_canonical_ac": "A0A9J7HH00-1", "uniprot_ac": "A0A9J7HH00", "uniprot_id": "A0A9J7HH00_CRIGR", "mass": { "chemical_mass": 57502.0, "monoisotopic_mass": 57502.0 }, "refseq": { "ac": "XP_035309619", "name": "LOW QUALITY PROTEIN: igE-binding protein-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309619" }, "gene_names": [ { "name": "LOC118239789", "type": "recommended", "evidence": [ { "id": "A0A9J7HH00", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HH00" } ] }, { "name": "LOC118239789", "type": "synonym", "evidence": [ { "id": "XP_035309619", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309619" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: igE-binding protein-like", "type": "synonym", "evidence": [ { "id": "XP_035309619", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309619" }, { "id": "A0A9J7HH00", 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This record is derived from a genomic sequence (NW_023276868.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035309619", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309619" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HH00", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HH00" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC118239789", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HH00", "locus": {} } ], "crossref": [ { "id": "118239789", "url": "https://www.ncbi.nlm.nih.gov/gene/118239789", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001878", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001878", "database": "InterPro", "categories": [ "Protein 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PROTEIN: GRB2-associated-binding protein 2-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309821" }, "gene_names": [ { "name": "LOC113838697", "type": "recommended", "evidence": [ { "id": "A0A9J7HHA9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HHA9" } ] }, { "name": "LOC113838697", "type": "synonym", "evidence": [ { "id": "XP_035309821", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309821" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: GRB2-associated-binding protein 2-like", "type": "synonym", "evidence": [ { "id": "XP_035309821", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309821" }, { "id": "A0A9J7HHA9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HHA9/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 2% of CDS bases frameshifts :: corrected 1 indel internal stop codons :: corrected 1 genomic stop codon ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023277426.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: incomplete on the carboxy end.", "evidence": [ { "database": "RefSeq", "id": "XP_035309821", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309821" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HHA9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HHA9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113838697", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HHA9", "locus": {} } ], "crossref": [ { "id": "113838697", "url": "https://www.ncbi.nlm.nih.gov/gene/113838697", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001849", "database": "InterPro", "categories": [ 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{ "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "uniprot_canonical_ac": "A0A9J7HHB7-1", "uniprot_ac": "A0A9J7HHB7", "uniprot_id": "A0A9J7HHB7_CRIGR", "mass": { "chemical_mass": 30079.0, "monoisotopic_mass": 30079.0 }, "refseq": { "ac": "XP_035309838", "name": "doublesex- and mab-3-related transcription factor C1-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309838" }, "gene_names": [ { "name": "LOC113837732", "type": "recommended", "evidence": [ { "id": "A0A9J7HHB7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HHB7" } ] }, { "name": "LOC113837732", "type": "synonym", "evidence": [ { "id": "XP_035309838", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309838" } ] } ], "protein_names": [ { "name": "Doublesex- and mab-3-related transcription factor C1-like", "type": "synonym", "evidence": [ { "id": "A0A9J7HHB7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HHB7/entry#names_and_taxonomy" } ] }, { "name": "doublesex- and mab-3-related transcription factor C1-like", "type": "synonym", "evidence": [ { "id": "XP_035309838", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309838" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 50% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023277441.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_035309838", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309838" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HHB7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HHB7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113837732", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HHB7", "locus": {} } ], "crossref": [ { "id": "A0A9J7HHB7", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HHB7", "database": "AlphaFoldDB", "categories": [] }, { "id": "113837732", "url": "https://www.ncbi.nlm.nih.gov/gene/113837732", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR031577", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031577", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113837732", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113837732", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7HHB7", "url": "https://www.orthodb.org/?gene=A0A9J7HHB7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PF15791", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15791", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_035309838", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_035309838", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7HHB7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HHB7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7HHB7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HHB7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDVSWCPSNLECHTGNKTGAPVGIEPGLRALANHPGRGHSCGTRTQAREHSEALPALGSEKRAHGVLLKRRQIRLPRTTRDVTHKPLKQGKKSCAKARGRTGKENTVCQPDVRTFTSSPEGSSQGPPLFCWPPPLSPPACMTMNPEQPLVVSSPSEQEEDDRGKEEDKEVILAKTSYTSRIEESTGTRPATQWAFNTWALFLYITTDGCLDMTPLPCPSVEHHPPEPQVPAEKLGPIASDQASVSATLECQETLEAAEALMTLKNSSWTWRQTHS", "length": 275, "header": "tr|A0A9J7HHB7-1|A0A9J7HHB7_CRIGR Isoform 1 of Doublesex- and mab-3-related transcription factor C1-like OS=Cricetulus griseus OX=10029 GN=LOC113837732 PE=3 SV=1 CANONICAL=A0A9J7HHB7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7HHB7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HHB7/entry#A0A9J7HHB7-1", "sequence": { "sequence": "MDVSWCPSNLECHTGNKTGAPVGIEPGLRALANHPGRGHSCGTRTQAREHSEALPALGSEKRAHGVLLKRRQIRLPRTTRDVTHKPLKQGKKSCAKARGRTGKENTVCQPDVRTFTSSPEGSSQGPPLFCWPPPLSPPACMTMNPEQPLVVSSPSEQEEDDRGKEEDKEVILAKTSYTSRIEESTGTRPATQWAFNTWALFLYITTDGCLDMTPLPCPSVEHHPPEPQVPAEKLGPIASDQASVSATLECQETLEAAEALMTLKNSSWTWRQTHS", "length": 275, "header": "tr|A0A9J7HHB7-1|A0A9J7HHB7_CRIGR Isoform 1 of Doublesex- and mab-3-related transcription factor C1-like OS=Cricetulus griseus OX=10029 GN=LOC113837732 PE=3 SV=1 CANONICAL=A0A9J7HHB7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [], "pathway": [ { "id": "cge:113837732", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113837732", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HHB7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HHB7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 16, "end_pos": 18, "annotation": "n_glycosylation_sequon" }, { "start_pos": 265, "end_pos": 267, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7HHB7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HHB7" }, { "id": "PF15791", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15791" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Doublesex- and mab-3-related transcription factor C1/C2 C-terminal", "eco_id": "ECO_0000259", "start_pos": 236, "end_pos": 269, "start_aa": "Pro", "end_aa": "Thr", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 16, "end_pos": 18 }, { "start_pos": 265, "end_pos": 267 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 0 } ], "sort_fields": [] } ] }, { "uniprot_canonical_ac": "A0A9J7HXA4-1", "uniprot_ac": "A0A9J7HXA4", "uniprot_id": "A0A9J7HXA4_CRIGR", "mass": { "chemical_mass": 48227.0, "monoisotopic_mass": 48227.0 }, "refseq": { "ac": "NP_001309953", "name": "AP-3 complex subunit mu-1 isoform 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001309953" }, "gene_names": [ { "name": "Ap3m1", "type": "recommended", "evidence": [ { "id": "A0A9J7HXA4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HXA4" } ] }, { "name": "Ap3m1", "type": "synonym", "evidence": [ { "id": "NP_001309953", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001309953" } ] } ], "protein_names": [ { "name": "AP-3 complex subunit mu-1", "type": "recommended", "evidence": [ { "id": "A0A9J7HXA4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HXA4/entry#names_and_taxonomy" } ] }, { "name": "AP-3 complex subunit mu-1 isoform 1", "type": "synonym", "evidence": [ { "id": "NP_001309953", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001309953" } ] }, { "name": "AP-3 complex subunit mu-1", "type": "synonym", "evidence": [ { "id": "NP_001309953", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001309953" } ] }, { "name": "adaptor protein complex 3 Mu3A", "type": "synonym", "evidence": [ { "id": "NP_001309953", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001309953" } ] }, { "name": "adaptor related protein complex 3 mu 1 subunit", "type": "synonym", "evidence": [ { "id": "NP_001309953", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001309953" } ] } ], "function": [ { "annotation": "##Evidence-Data-START## Transcript exon combination :: JP040800.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support SAMN04275174, SAMN04275175 [ECO:0000350] ##Evidence-Data-END## VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AFTD01040519.1. On Apr 16, 2016 this sequence version replaced XP_007650802.1. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments.", "evidence": [ { "database": "RefSeq", "id": "NP_001309953", "url": "https://www.ncbi.nlm.nih.gov/protein/NP_001309953" } ] }, { "annotation": "Part of the AP-3 complex, an adaptor-related complex which is not clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to lysosomes.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HXA4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HXA4#function" }, { "database": "UniProtKB", "id": "PIRNR005992", "url": "https://www.uniprot.org/uniprotkb/PIRNR005992#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7HXA4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HXA4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ap3m1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7HXA4", "locus": {} } ], "crossref": [ { "id": "A0A9J7HXA4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7HXA4", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd09260", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09260", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd14837", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd14837", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100689277", "url": "https://www.ncbi.nlm.nih.gov/gene/100689277", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001392", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001392", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011012", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011012", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018240", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018240", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022775", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022775", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028565", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028565", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036168", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036168", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050431", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050431", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7HXA4", "url": "https://www.orthodb.org/?gene=A0A9J7HXA4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10529", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10529", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00928", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00928", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01217", "url": 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"MEKLCGHRDILSLENQCLPMLPDLQPLEKLHGHTSVHPDILSLENRCLPMLPDLRHLEKLCGHMSSHSDILSLENQCLPMLPDLRQLEKLCGHMSSHSDILSLENRCLATLSAVKSSVSTSPLLQCHRASHMMQADLCGPNISNCLFPEPPTKKVPCVSENLDLPTCSRVPESISATTGVQEVALAQWCFSEEQEMQGATERAQMPLYSLSLGDEEELDAPVLKLTSGDSESHAETTDRLLQEKKMALLTLLCSALASHVNVKSASDPTRESILEVCRELASLEPEFILKASLYARQQLNIREVANTVLAIAAFLPACRPHVRRYYSAIVRLPSDWIQVAEFYQSLAEGNEKKLVPLPACLRAAMTDKFAQFDEYQLAKYNPRKHRSKKRSRQPPRPQKTERPFSERGKCFPKSLWPLKNEQIMFEAAYNAVPEKSLPRFTLKKLVEKLHIHEPAQHVQALLGYRYPSTLELFSRSHLPGPWDSSRAGQRMKLQRPETWERELSLRGNKACVWEELIDNGKLPFMAMLRNLCNLLRTGISARHHELILQKLQHEKSVVNSRQFPFRFLNAHDSIDKLEAQLRSKALPFPSNTTLMRRIMIRNSKTIKKPANSRHLCTLTRRQLRAAMTIPVIFEKLKREKLRLQKTRQWNCDVKLLERYRQALETAVNLSVKHNLAPLPGRTLLVYLTDANADRLCPKSHSQGPPLNYVLLLIAMMMARAEQVTVLLCGRGTVKIPVLETDEGILKTAIKLQAQVQELEEMDDWPINTFGKYLLSLAVQRTPVDRVILFGEMMNTEMLNVAKQIIWQHVNSKCLFVGVLLRKAQYIPANLNPNDVTLSGCTDGILKFIAEHGASRLLDHVGQLDKVFKIPPLPGKTQALSLRPLEEDIPGPPGPISQHGWRNVRLFISSTFRDMHGERDLLMRSVLPALQARVFPHRISLHAIDLRWGVTEEETRRNRQLEVCLGEVENSQLFVGILGSRYGYIPPSYDLPDHPHFHWAQQYPSGRSVTEMEVMQFLNRSQRLQPSAQALIYFRDPGFLSSVPDAWKHDFISESEETAHRVSELKNYLHKQKEVTCRRYSCEWGGVAAGRPFAGGLEEFGQLVLQDVWSMIQKLYLQPGAQSEQPESILDDDLIQASFQQLKNPPSPARPRLLQDTVQQLMLPHGRLSLVTGQAGQGKTAFLASLVSALQAPDQHNVPPLVFFHFSAARPDQCLALNLLRRLCTYLHRKLQEPSALPSTYRGLVWELQQRLLLKSAQSLKPGQTLVLVIDGADKMVGQNGQLTSDWVPKFLPRRVHLVLSVSSDSGLGETLQQSQAASVVALGPLVPSSRAQLVREELALYGKRLEESPFNNQMRLLLVKQGSGLPLYLHLVTDYLRLFTLYEQVSERLRALPATLPLLLQQILSTLEQEHGHDVLPRALAALEVTKSGLTVEQLHAVLSTWLILPKEIKSWEEAVAAEHSRNPYPSGPFAYLVQSLRSLLREGPVERPGARLCLSDGPLRTAVNRRYGKKLGLEKTAHVLIAAHLWKICDPDASGIFQSCPPEALKDLPYHLLQSGNHDLLAKFLTNLHVVAAYLEMGLVSDLLEAHVLYASSTSEVNPKPLEADVAAFRTFLRQQALLLAQYPLLLLQQAASQPVESPVCCQAPLLTQRWHLQFTLRWINKPQTLKDQQSLSLAISSPTAVALSPNGQKAAVGTANGTIYLLDLRTWQEEKALVSGCDGISSFAFLSDSALFLTTFDGLLELWDLQHGCWVFQAKAHQHQITGCCLSPDRRLLATVCLGGDLKLWDTVSGQLAFQHTCPKSLNCIAFHPEGQVVATGNWAGSLTFFQADGLKVIKELGAPGASVRTLAFSAPGKSVAVGRIDGAVELWAWQEATRLATFSAHCGCVDAVLFLHAGGRFLTAGEDGKAQLWSGFLGRPRGCLGSFPLSPALSVALNPDGGQVAVGYREDGIKIYNISSGSQETQRQVLNVAVSALVWLSPSVLVSGAEDGSLRGWMIKGRSLYSLWLLSRHQKPVLGLATSQELLASASEDFTVRLWSRQLLTQPHEAEDFPCCAELRGHEGPVCCCNFSPDGSILATAGRDRNLLCWDVKTAQAPLLIHSLTSCHRDWITGCAWTKDNLLVSCSNDGSVGLWDPESGQQLGQFLGHQSAVSSVVAVEEHIVSVSRDGTLKVWDQQGVELTSIPAHTGPISQCAAVLESRPAGQPGSELLAVTVGLDGATKLWHPLLVCQIRTLQGHSGPVTAAAASEASGHLLTSDNSSVQLWQIPKEADDANKPRSAVVITAVAWAPDGSLAVSANEAGELILWQEAKAVATAQAPGRVSDVIWYSAHSFFVLSANENVSEWQVELLEGSTSRNPSLHMKRVLPEDLGVLTGLDLAPDGQSLIIMKENVELLQMKPGCTPSVICRRFGSHSSILCTSKEHGIFYLQQGVSAFLSFLEQKESGEFDENLDFILDIKNPNGSPVAITQAKPESESAFLCATSDGMLWSLAECTQEGEWIVDNIWQKKAKPPKTQSPETDPSVHSDSDSCMESWSGPRHLKAQQGKKIHLGSVTALHVLPGLLVTASKDRDVKLWERPSMQLLGLFRCDGPVSCVEPWLGPDSTLKLAVGDTQGNLYFLSWE", "length": 2622, "header": "tr|A0A9J7J187-1|A0A9J7J187_CRIGR Isoform 1 of Telomerase protein component 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Tep1 PE=4 SV=1 CANONICAL=A0A9J7J187-1" }, "isoforms": [ { "isoform_ac": "A0A9J7J187-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J187/entry#A0A9J7J187-1", "sequence": { "sequence": "MEKLCGHRDILSLENQCLPMLPDLQPLEKLHGHTSVHPDILSLENRCLPMLPDLRHLEKLCGHMSSHSDILSLENQCLPMLPDLRQLEKLCGHMSSHSDILSLENRCLATLSAVKSSVSTSPLLQCHRASHMMQADLCGPNISNCLFPEPPTKKVPCVSENLDLPTCSRVPESISATTGVQEVALAQWCFSEEQEMQGATERAQMPLYSLSLGDEEELDAPVLKLTSGDSESHAETTDRLLQEKKMALLTLLCSALASHVNVKSASDPTRESILEVCRELASLEPEFILKASLYARQQLNIREVANTVLAIAAFLPACRPHVRRYYSAIVRLPSDWIQVAEFYQSLAEGNEKKLVPLPACLRAAMTDKFAQFDEYQLAKYNPRKHRSKKRSRQPPRPQKTERPFSERGKCFPKSLWPLKNEQIMFEAAYNAVPEKSLPRFTLKKLVEKLHIHEPAQHVQALLGYRYPSTLELFSRSHLPGPWDSSRAGQRMKLQRPETWERELSLRGNKACVWEELIDNGKLPFMAMLRNLCNLLRTGISARHHELILQKLQHEKSVVNSRQFPFRFLNAHDSIDKLEAQLRSKALPFPSNTTLMRRIMIRNSKTIKKPANSRHLCTLTRRQLRAAMTIPVIFEKLKREKLRLQKTRQWNCDVKLLERYRQALETAVNLSVKHNLAPLPGRTLLVYLTDANADRLCPKSHSQGPPLNYVLLLIAMMMARAEQVTVLLCGRGTVKIPVLETDEGILKTAIKLQAQVQELEEMDDWPINTFGKYLLSLAVQRTPVDRVILFGEMMNTEMLNVAKQIIWQHVNSKCLFVGVLLRKAQYIPANLNPNDVTLSGCTDGILKFIAEHGASRLLDHVGQLDKVFKIPPLPGKTQALSLRPLEEDIPGPPGPISQHGWRNVRLFISSTFRDMHGERDLLMRSVLPALQARVFPHRISLHAIDLRWGVTEEETRRNRQLEVCLGEVENSQLFVGILGSRYGYIPPSYDLPDHPHFHWAQQYPSGRSVTEMEVMQFLNRSQRLQPSAQALIYFRDPGFLSSVPDAWKHDFISESEETAHRVSELKNYLHKQKEVTCRRYSCEWGGVAAGRPFAGGLEEFGQLVLQDVWSMIQKLYLQPGAQSEQPESILDDDLIQASFQQLKNPPSPARPRLLQDTVQQLMLPHGRLSLVTGQAGQGKTAFLASLVSALQAPDQHNVPPLVFFHFSAARPDQCLALNLLRRLCTYLHRKLQEPSALPSTYRGLVWELQQRLLLKSAQSLKPGQTLVLVIDGADKMVGQNGQLTSDWVPKFLPRRVHLVLSVSSDSGLGETLQQSQAASVVALGPLVPSSRAQLVREELALYGKRLEESPFNNQMRLLLVKQGSGLPLYLHLVTDYLRLFTLYEQVSERLRALPATLPLLLQQILSTLEQEHGHDVLPRALAALEVTKSGLTVEQLHAVLSTWLILPKEIKSWEEAVAAEHSRNPYPSGPFAYLVQSLRSLLREGPVERPGARLCLSDGPLRTAVNRRYGKKLGLEKTAHVLIAAHLWKICDPDASGIFQSCPPEALKDLPYHLLQSGNHDLLAKFLTNLHVVAAYLEMGLVSDLLEAHVLYASSTSEVNPKPLEADVAAFRTFLRQQALLLAQYPLLLLQQAASQPVESPVCCQAPLLTQRWHLQFTLRWINKPQTLKDQQSLSLAISSPTAVALSPNGQKAAVGTANGTIYLLDLRTWQEEKALVSGCDGISSFAFLSDSALFLTTFDGLLELWDLQHGCWVFQAKAHQHQITGCCLSPDRRLLATVCLGGDLKLWDTVSGQLAFQHTCPKSLNCIAFHPEGQVVATGNWAGSLTFFQADGLKVIKELGAPGASVRTLAFSAPGKSVAVGRIDGAVELWAWQEATRLATFSAHCGCVDAVLFLHAGGRFLTAGEDGKAQLWSGFLGRPRGCLGSFPLSPALSVALNPDGGQVAVGYREDGIKIYNISSGSQETQRQVLNVAVSALVWLSPSVLVSGAEDGSLRGWMIKGRSLYSLWLLSRHQKPVLGLATSQELLASASEDFTVRLWSRQLLTQPHEAEDFPCCAELRGHEGPVCCCNFSPDGSILATAGRDRNLLCWDVKTAQAPLLIHSLTSCHRDWITGCAWTKDNLLVSCSNDGSVGLWDPESGQQLGQFLGHQSAVSSVVAVEEHIVSVSRDGTLKVWDQQGVELTSIPAHTGPISQCAAVLESRPAGQPGSELLAVTVGLDGATKLWHPLLVCQIRTLQGHSGPVTAAAASEASGHLLTSDNSSVQLWQIPKEADDANKPRSAVVITAVAWAPDGSLAVSANEAGELILWQEAKAVATAQAPGRVSDVIWYSAHSFFVLSANENVSEWQVELLEGSTSRNPSLHMKRVLPEDLGVLTGLDLAPDGQSLIIMKENVELLQMKPGCTPSVICRRFGSHSSILCTSKEHGIFYLQQGVSAFLSFLEQKESGEFDENLDFILDIKNPNGSPVAITQAKPESESAFLCATSDGMLWSLAECTQEGEWIVDNIWQKKAKPPKTQSPETDPSVHSDSDSCMESWSGPRHLKAQQGKKIHLGSVTALHVLPGLLVTASKDRDVKLWERPSMQLLGLFRCDGPVSCVEPWLGPDSTLKLAVGDTQGNLYFLSWE", "length": 2622, "header": "tr|A0A9J7J187-1|A0A9J7J187_CRIGR Isoform 1 of Telomerase protein component 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Tep1 PE=4 SV=1 CANONICAL=A0A9J7J187-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J592-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J187/entry#A0A9J7J592-1", "sequence": { "sequence": "MEKLCGHRDILSLENQCLPMLPDLQPLEKLHGHTSVHPDILSLENRCLPMLPDLRHLEKLCGHMSSHSDILSLENQCLPMLPDLRQLEKLCGHMSSHSDILSLENRCLATLSAVKSSVSTSPLLQCHRASHMMQADLCGPNISNCLFPEPPTKKVPCVSENLDLPTCSRVPESISATTGVQEVALAQWCFSEEQEMQGATERAQMPLYSLSLGDEEELDAPVLKLTSGDSESHAETTDRLLQEKKMALLTLLCSALASHVNVKSASDPTRESILEVCRELASLEPEFILKASLYARQQLNIREVANTVLAIAAFLPACRPHVRRYYSAIVRLPSDWIQVAEFYQSLAEGNEKKLVPLPACLRAAMTDKFAQFDEYQLAKYNPRKHRSKKRSRQPPRPQKTERPFSERGKCFPKSLWPLKNEQIMFEAAYNAVPEKSLPRFTLKKLVEKLHIHEPAQHVQALLGYRYPSTLELFSRSHLPGPWDSSRAGQRMKLQRPETWERELSLRGNKACVWEELIDNGKLPFMAMLRNLCNLLRTGISARHHELILQKLQHEKSVVNSRQFPFRFLNAHDSIDKLEAQLRSKALPFPSNTTLMRRIMIRNSKTIKKPANSRHLCTLTRRQLRAAMTIPVIFEKLKREKLRLQKTRQWNCDVKLLERYRQALETAVNLSVKHNLAPLPGRTLLVYLTDANADRLCPKSHSQGPPLNYVLLLIAMMMARAEQVTVLLCGRGTVKIPVLETDEGILKTAIKLQAQVQELEEMDDWPINTFGKYLLSLAVQRTPVDRVILFGEMMNTEMLNVAKQIIWQHVNSKCLFVGVLLRKAQYIPANLNPNDVTLSGCTDGILKFIAEHGASRLLDHVGQLDKVFKIPPLPGKTQALSLRPLEEDIPGPPGPISQHGWRNVRLFISSTFRDMHGERDLLMRSVLPALQARVFPHRISLHAIDLRWGVTEEETRRNRQLEVCLGEVENSQLFVGILGSRYGYIPPSYDLPDHPHFHWAQQYPSGRSVTEMEVMQFLNRSQRLQPSAQALIYFRDPGFLSSVPDAWKHDFISESEETAHRVSELKNYLHKQKEVTCRRYSCEWGGVAAGRPFAGGLEEFGQLVLQDVWSMIQKLYLQPGAQSEQPESILDDDLIQASFQQLKNPPSPARPRLLQDTVQQLMLPHGRLSLVTGQAGQGKTAFLASLVSALQAPDQHNVPPLVFFHFSAARPDQCLALNLLRRLCTYLHRKLQEPSALPSTYRGLVWELQQRLLLKSAQSLKPGQTLVLVIDGADKMVGQNGQLTSDWVPKFLPRRVHLVLSVSSDSGLGETLQQSQAASVVALGPLVPSSRAQLVREELALYGKRLEESPFNNQMRLLLVKQGSGLPLYLHLVTDYLRLFTLYEQVSERLRALPATLPLLLQQILSTLEQEHGHDVLPRALAALEVTKSGLTVEQLHAVLSTWLILPKEIKSWEEAVAAEHSRNPYPSGPFAYLVQSLRSLLREGPVERPGARLCLSDGPLRTAVNRRYGKKLGLEKTAHVLIAAHLWKICDPDASGIFQSCPPEALKDLPYHLLQSGNHDLLAKFLTNLHVVAAYLEMGLVSDLLEAHVLYASSTSEVNPKPLEADVAAFRTFLRQQALLLAQYPLLLLQQAASQPVESPVCCQAPLLTQRWHLQFTLRWINKPQTLKDQQSLSLAISSPTAVALSPNGQKAAVGTANGTIYLLDLRTWQEEKALVSGCDGISSFAFLSDSALFLTTFDGLLELWDLQHGCWVFQAKAHQHQITGCCLSPDRRLLATVCLGGDLKLWDTVSGQLAFQHTCPKSLNCIAFHPEGQVVATGNWAGSLTFFQADGLKVIKELGAPGASVRTLAFSAPGKSVAVGRIDGAVELWAWQEATRLATFSAHCGCVDAVLFLHAGGRFLTAGEDGKAQLWSGFLGRPRGCLGSFPLSPALSVALNPDGGQVAVGYREDGIKIYNISSGSQETQRQVLNVAVSALVWLSPSVLVSGAEDGSLRGWMIKGRSLYSLWLLSRHQKPVLGLATSQELLASASEDFTVRLWSRQLLTQPHEAEDFPCCAELRGHEGPVCCCNFSPDGSILATAGRDRNLLCWDVKTAQAPLLIHSLTSCHRDWITGCAWTKDNLLVSCSNDGSVGLWDPESGQQLGQFLGHQSAVSSVVAVEEHIVSVSRDGTLKVWDQQGVELTSIPAHTGPISQCAAVLESRPAGQPGSELLAVTVGLDGATKLWHPLLVCQIRTLQGHSGPVTAAAASEASGHLLTSDNSSVQLWQIPKEADDANKPRSAVVITAVAWAPDGSLAVSANEAGELILWQEAKAVATAQAPGRVSDVIWYSAHSFFVLSANENVSEWQVELLEGSTSRNPSLHMKRVLPEDLGVLTGLDLAPDGQSLIIMKENVELLQMKPGCTPSVICRRFGSHSSILCTSKEHGIFYLQQGVSAFLSFLRPHSSGGGHHDTKTCCQVWGSSTTGDGRDTSIKRVELFYIFSWGPAWVDSYMRPFHAWTVL", "length": 2500, "header": "tr|A0A9J7J592-1|A0A9J7J592_CRIGR Computationally mapped isoform of Telomerase protein component 1 isoform X2 OS=Cricetulus griseus OX=10029 GN=Tep1 PE=4 SV=1 CANONICAL=A0A9J7J187-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J187", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J187" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J187", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J187" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100753953", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753953", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "telomerase activity", "id": "GO:0003720", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003720", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J187", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J187" } ], "pmid": "" }, { "name": "telomerase RNA binding", "id": "GO:0070034", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070034", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J187", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J187" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "telomerase holoenzyme complex", "id": "GO:0005697", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005697", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J187", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J187" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "telomere maintenance via recombination", "id": "GO:0000722", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000722", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J187", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J187" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1018, "end_pos": 1020, "annotation": "n_glycosylation_sequon" }, { "start_pos": 141, "end_pos": 143, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1698, "end_pos": 1700, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1956, "end_pos": 1958, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2069, "end_pos": 2071, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2259, "end_pos": 2261, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2341, "end_pos": 2343, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2461, "end_pos": 2463, "annotation": "n_glycosylation_sequon" }, { "start_pos": 591, "end_pos": 593, "annotation": "n_glycosylation_sequon" }, { "start_pos": 668, "end_pos": 670, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7J187", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J187" }, { "id": "PS50837", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50837" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "NACHT", "eco_id": "ECO_0000259", "start_pos": 1166, "end_pos": 1573, "start_aa": "Arg", "end_aa": "Ala", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7J187", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J187" }, { "id": "PS50988", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50988" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "TROVE", "eco_id": "ECO_0000259", "start_pos": 223, "end_pos": 680, "start_aa": "Leu", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1018, "end_pos": 1020 }, { "start_pos": 141, "end_pos": 143 }, { "start_pos": 1698, "end_pos": 1700 }, { "start_pos": 1956, "end_pos": 1958 }, { "start_pos": 2069, "end_pos": 2071 }, { "start_pos": 2259, "end_pos": 2261 }, { "start_pos": 2341, "end_pos": 2343 }, { "start_pos": 2461, "end_pos": 2463 }, { "start_pos": 591, "end_pos": 593 }, { "start_pos": 668, "end_pos": 670 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": 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{ "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7J1P3-1", "uniprot_ac": "A0A9J7J1P3", "uniprot_id": "A0A9J7J1P3_CRIGR", "mass": { "chemical_mass": 47309.0, "monoisotopic_mass": 47309.0 }, "refseq": { "ac": "XP_003509072", "name": "SEC14-like protein 4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003509072" }, "gene_names": [ { "name": "LOC100759451", "type": "recommended", "evidence": [ { "id": "A0A9J7J1P3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J1P3" } ] }, { "name": "LOC100759451", "type": "synonym", "evidence": [ { 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predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614628.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003509072", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003509072" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J1P3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J1P3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100759451", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J1P3", "locus": {} } ], "crossref": [ { "id": "A0A9J7J1P3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7J1P3", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00170", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00170", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100759451", "url": "https://www.ncbi.nlm.nih.gov/gene/100759451", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001251", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001251", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009038", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009038", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011074", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011074", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036273", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036273", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036865", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036865", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051064", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051064", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100759451", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759451", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YDHEGCP", "url": "https://omabrowser.org/oma/group/YDHEGCP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7J1P3", "url": "https://www.orthodb.org/?gene=A0A9J7J1P3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23324", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23324", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23324:SF42", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23324:SF42", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00650", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00650", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03765", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03765", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003509072", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003509072", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7J1P3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J1P3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J1P3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J1P3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSGQVGELSPQQQETLARFRENLQDVLPILPKADDYFLLRWLRARNFDLKKSEDMLRKHVEFRNQQDLDHILMWQPPEVIQLYDSGGLSGYDYEGCPVWFDIIGTMDPRGLLMSASKQDMIRKRIKVCELLQRECELQSQKLGRKIERMMMVFDMEGLSLRHLWKPAVEVYQQFFAILEANYPETVKNLIIIRAPRLFPVAFNLVKSFMGEATQKKIVILGDNWKQELLTFMSPDQLPVEFGGTMTDPDGNPKCLTKINYGGDVPKHYYLCKQERPQYEHTVVVGRGSSHQVENEILFPGCVLRWQFASDGGDIGFGIFLKTRMGERQKAGEMAEVLPSQRYNAHMVPEDGSLTCSKAGVYVLRFDNTYSLLHTKKVGYTAEVLLPDKACEEKLQGLRATNPPQNSEDSDRL", "length": 412, "header": "tr|A0A9J7J1P3-1|A0A9J7J1P3_CRIGR Isoform 1 of SEC14-like protein 4 OS=Cricetulus griseus OX=10029 GN=LOC100759451 PE=4 SV=1 CANONICAL=A0A9J7J1P3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7J1P3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J1P3/entry#A0A9J7J1P3-1", "sequence": { "sequence": "MSGQVGELSPQQQETLARFRENLQDVLPILPKADDYFLLRWLRARNFDLKKSEDMLRKHVEFRNQQDLDHILMWQPPEVIQLYDSGGLSGYDYEGCPVWFDIIGTMDPRGLLMSASKQDMIRKRIKVCELLQRECELQSQKLGRKIERMMMVFDMEGLSLRHLWKPAVEVYQQFFAILEANYPETVKNLIIIRAPRLFPVAFNLVKSFMGEATQKKIVILGDNWKQELLTFMSPDQLPVEFGGTMTDPDGNPKCLTKINYGGDVPKHYYLCKQERPQYEHTVVVGRGSSHQVENEILFPGCVLRWQFASDGGDIGFGIFLKTRMGERQKAGEMAEVLPSQRYNAHMVPEDGSLTCSKAGVYVLRFDNTYSLLHTKKVGYTAEVLLPDKACEEKLQGLRATNPPQNSEDSDRL", "length": 412, "header": "tr|A0A9J7J1P3-1|A0A9J7J1P3_CRIGR Isoform 1 of SEC14-like protein 4 OS=Cricetulus griseus OX=10029 GN=LOC100759451 PE=4 SV=1 CANONICAL=A0A9J7J1P3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J1P3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J1P3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J1P3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J1P3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100759451", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759451", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q8R0F9-1", "protein_name": "SEC14-like protein 4", "gene_name": "Sec14l4", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRGQVGDLSPQQQEALARFRETLQDLLPTLPKADDYFLLRWLRARNFDLKKSEDMLRKHVEFRNQQNLDQILTWQAPEVIQLYDSGGLSGYDYEGCPVWFDIIGTMDPKGLFMSASKQDMIRKRIKVCEMLLHECELQSQKLGRKIERMVMVFDMEGLSLRHLWKPAVEVYQQFFAILEANYPETVKNLIIIRAPKLFPVAFNLVKSFMGEETQKKIVILGGNWKQELVKFVSPDQLPVEFGGTMTDPDGNPKCLTKINYGGEVPKRYYLSNQERPQYEHSVVVGRGSSHQVENEILFPGCVLRWQFASDGGDIGFGVFLKTRMGERQKAGEMVEVLPSQRYNAHMVPEDGSLNCLKAGVYVLRFDNTYSLLHTKKVGYTAEVLLPDKACEEKLQGLGSVSPP", "length": 403 }, "evidence": [ { "id": "A0A9J7J1P3", "url": "https://omabrowser.org/oma/group/A0A9J7J1P3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J1P3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J1P3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7J1P3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J1P3" }, { "id": "PS50191", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50191" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CRAL-TRIO", "eco_id": "ECO_0000259", "start_pos": 76, "end_pos": 249, "start_aa": "Pro", "end_aa": "Asp", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7J1P3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J1P3" }, { "id": "PS50866", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50866" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "GOLD", "eco_id": "ECO_0000259", "start_pos": 275, "end_pos": 383, "start_aa": "Arg", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7J1Y0-1", "uniprot_ac": "A0A9J7J1Y0", "uniprot_id": "A0A9J7J1Y0_CRIGR", "mass": { "chemical_mass": 32095.0, "monoisotopic_mass": 32095.0 }, "refseq": { "ac": "XP_027243485", "name": "oogenesin-2-like", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243485" }, "gene_names": [ { "name": "LOC100773839", "type": "recommended", "evidence": [ { "id": "A0A9J7J1Y0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J1Y0" } ] }, { "name": "LOC100773839", "type": "synonym", "evidence": [ { "id": "XP_027243485", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243485" } ] } ], "protein_names": [ { "name": "Oogenesin-2-like", "type": "synonym", "evidence": [ { "id": "A0A9J7J1Y0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J1Y0/entry#names_and_taxonomy" } ] }, { "name": "oogenesin-2-like", "type": "synonym", "evidence": [ { "id": "XP_027243485", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027243485" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 10% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027243485.1. 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This record is derived from a genomic sequence (NW_003614031.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007642801", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007642801" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J285", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J285" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Spaca7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J285", "locus": {} } ], "crossref": [ { "id": "A0A9J7J285", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7J285", "database": "AlphaFoldDB", "categories": [] }, { "id": "103160355", "url": "https://www.ncbi.nlm.nih.gov/gene/103160355", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029301", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029301", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:103160355", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103160355", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7J285", "url": "https://www.orthodb.org/?gene=A0A9J7J285", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PF15307", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15307", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007642801", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007642801", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7J285", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J285", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J285-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J285-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDNMSIHTTHVHTADLHNASIVITGQTQDEKNIFNKVLALRSCPVTDDTLKSTTDDIPEVFDEILAQEILEPNTTAVSEAPTTKKATITSVSTKEKISGVDENYQEDSSENYHELLENLELTSMNKEKNDGNDRSTAENIHEHSSQTKVEPHFSYEEKKNTNNDKKRKVSVLDRILQNIGRSEGNLELTGKWPLICRSLWAEVK", "length": 204, "header": "tr|A0A9J7J285-1|A0A9J7J285_CRIGR Isoform 1 of Sperm acrosome-associated protein 7 OS=Cricetulus griseus OX=10029 GN=Spaca7 PE=4 SV=1 CANONICAL=A0A9J7J285-1" }, "isoforms": [ { "isoform_ac": "A0A9J7J285-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J285/entry#A0A9J7J285-1", "sequence": { "sequence": "MDNMSIHTTHVHTADLHNASIVITGQTQDEKNIFNKVLALRSCPVTDDTLKSTTDDIPEVFDEILAQEILEPNTTAVSEAPTTKKATITSVSTKEKISGVDENYQEDSSENYHELLENLELTSMNKEKNDGNDRSTAENIHEHSSQTKVEPHFSYEEKKNTNNDKKRKVSVLDRILQNIGRSEGNLELTGKWPLICRSLWAEVK", "length": 204, "header": "tr|A0A9J7J285-1|A0A9J7J285_CRIGR Isoform 1 of Sperm acrosome-associated protein 7 OS=Cricetulus griseus OX=10029 GN=Spaca7 PE=4 SV=1 CANONICAL=A0A9J7J285-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027244862", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244862" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J2M6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J2M6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Bnip5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J2M6", "locus": {} } ], "crossref": [ { "id": "A0A9J7J2M6", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7J2M6", "database": "AlphaFoldDB", "categories": [] }, { "id": "100762947", "url": "https://www.ncbi.nlm.nih.gov/gene/100762947", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR031362", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031362", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100762947", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762947", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7J2M6", "url": "https://www.orthodb.org/?gene=A0A9J7J2M6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22435", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22435", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22435:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22435:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15661", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15661", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027244862", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244862", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7J2M6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J2M6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J2M6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J2M6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPCSRNPSPGMSPDSGDLSGLSPVAPPRGLRKPPADKRAQSLDRQVPKKNSESLNSKYPSGPTHKKVLRRTSSDVARGSGNPSHFAEVQEAVVTALPLGEGSEFLSCEHGPPEDTKKEKPPKQTQQSWASMLLNIFLPRTGLEESREKASRKSKGKGQTSKSPEAGEEPGLRKKSQEKRTSHKHGHRKPAAEEATGPQSSEAEGQEDILPSLAASQSQGADLGLICRGRPDPEIPQALPVEEGHADSSESSAGVAGAPSEEDPQKPDQDEVIWKIVELLKKAGDHLEEEQVPQPEVVPPNPLPPPRKKSQERKASLKRALSLKKPASEEPKRGGAATAVGPETRPKRPGYLPLCISGQRASTSSNRDSEEPRSQEVPSVDGGCPNSSELHTPAECQGPVERPPRDKAWESREFRRKILALLQSSEEQNGEQQVQVQEAEEAGESPAPACKVKSQRKKSNLRRAFSLRKHGSKDSKRPEASGTLAAASPEARPPKRHGFLPMCVGGHRASISSGPEDLEFQKLEATRGEPSGSPEGSFQARSHDPDEQPLPEGAWESKESIIHKLVEGLQEVDSDLGRQIRKYPSFKKFFNGFSDASLRKLVASLDRQKARLSEEDRSPVNRPPPCAFGSLKFSANHSCAICTLMQSRGQYKGHSYAHFLSSKAQQNITSLAGQSPD", "length": 676, "header": "tr|A0A9J7J2M6-1|A0A9J7J2M6_CRIGR Isoform 1 of Protein BNIP5 OS=Cricetulus griseus OX=10029 GN=Bnip5 PE=4 SV=1 CANONICAL=A0A9J7J2M6-1" }, "isoforms": [ { "isoform_ac": "A0A9J7J2M6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J2M6/entry#A0A9J7J2M6-1", "sequence": { "sequence": "MPCSRNPSPGMSPDSGDLSGLSPVAPPRGLRKPPADKRAQSLDRQVPKKNSESLNSKYPSGPTHKKVLRRTSSDVARGSGNPSHFAEVQEAVVTALPLGEGSEFLSCEHGPPEDTKKEKPPKQTQQSWASMLLNIFLPRTGLEESREKASRKSKGKGQTSKSPEAGEEPGLRKKSQEKRTSHKHGHRKPAAEEATGPQSSEAEGQEDILPSLAASQSQGADLGLICRGRPDPEIPQALPVEEGHADSSESSAGVAGAPSEEDPQKPDQDEVIWKIVELLKKAGDHLEEEQVPQPEVVPPNPLPPPRKKSQERKASLKRALSLKKPASEEPKRGGAATAVGPETRPKRPGYLPLCISGQRASTSSNRDSEEPRSQEVPSVDGGCPNSSELHTPAECQGPVERPPRDKAWESREFRRKILALLQSSEEQNGEQQVQVQEAEEAGESPAPACKVKSQRKKSNLRRAFSLRKHGSKDSKRPEASGTLAAASPEARPPKRHGFLPMCVGGHRASISSGPEDLEFQKLEATRGEPSGSPEGSFQARSHDPDEQPLPEGAWESKESIIHKLVEGLQEVDSDLGRQIRKYPSFKKFFNGFSDASLRKLVASLDRQKARLSEEDRSPVNRPPPCAFGSLKFSANHSCAICTLMQSRGQYKGHSYAHFLSSKAQQNITSLAGQSPD", "length": 676, "header": "tr|A0A9J7J2M6-1|A0A9J7J2M6_CRIGR Isoform 1 of Protein BNIP5 OS=Cricetulus griseus OX=10029 GN=Bnip5 PE=4 SV=1 CANONICAL=A0A9J7J2M6-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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1 of SCY1-like protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC103160199 PE=3 SV=1 CANONICAL=A0A9J7J7E3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7J4N5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7E3/entry#A0A9J7J4N5-1", "sequence": { "sequence": "MESMLNKLKSTVTKVTADVTSAVMGNPVTREFDVGRHIASGGNGLAWKIFNGTKKSTKQEVAVFVFDKKLIDKYQKFEKDQIIDSLKRGVQQLTRLRHPRLLTVQHPLEESRDCLAFCTEPVFASLANVLGNWENLPSSISPDIKDYKLYDVETKYGLLQVSEGLSFLHSSVKMVHGNVTPENIILNKSGAWKIMGFDFCVSSSNPSEQEPKFLCKEWDPNLPSLCLPNPEYLAPEYILSVSCETASDMYSLGTVIYAVFNKGKPIFEVNKQDIYKSFSRQLDQLSRLRSSSLTSIPEEVREHVKLLLNVTPTVRPDADQMTKIPFFDDVGAVTLQYFDTLFQRDNLQKSQFFKGLPKVLPKLPKRVIVQRILPCLTSEFVNPDMVPFVLPNVLLIAEECTKEEYVKLILPELGPVFKQQEPIQILLIFLQKMDLLLTKTPPDEIKNSVLPMVYRALEAPSIQIQELCLNIIPTFANLIDYPSMKNALIPRIKNACLQTSSLAVRVNSLVCLGKILEYLDKWFVLDDILPFLQQIPSKEPAVLMGILGIYKCTFTHKKLGITKEQLAGKVLPHLIPLSIENNLNLNQFSSFIAVIKEMLSRLESEHRTKLEQLHMMQEQQRSLDIGNQMSAPEETNVAHAGSQIDKVFNNIGADLLTGGESENKEDGLQNKQKRASLTLEEKQKLAKEQEQAQKLKSQQPLKPQPHTPIVPIKQTKDLTDTLMDNMTSLSSLSVSTPKLSASSTFTSVPSTGLSMMFSTPIDNTKRNLTNGLNANMGFQTSGFNMPVNPNQNFFSGTSTAGVTTMTLGAAPTLSNYSSLSVPSAGVKQAQQRPTDMSALNNLFGPQKPKVSMNQLSQQKPNQWLSQFVPPPGSPGLGNAAMGTQVNVIGQTAFGMQGNPFFNPQNFAQPPTTMTSSGSASNDLKDLFG", "length": 928, "header": "tr|A0A9J7J4N5-1|A0A9J7J7E3_CRIGR Computationally mapped isoform of SCY1-like protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC103160199 PE=3 SV=1 CANONICAL=A0A9J7J7E3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7J7E3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7E3/entry#A0A9J7J7E3-1", "sequence": { "sequence": "MESMLNKLKSTVTKVTADVTSAVMGNPVTREFDVGRHIASGGNGLAWKIFNGTKKSTKQEVAVFVFDKKLIDKYQKFEKDQIIDSLKRGVQQLTRLRHPRLLTVQHPLEESRDCLAFCTEPVFASLANVLGNWENLPSSISPDIKDYKLYDVETKYGLLQVSEGLSFLHSSVKMVHGNVTPENIILNKSGAWKIMGFDFCVSSSNPSEQEPKFLCKEWDPNLPSLCLPNPEYLAPEYILSVSCETASDMYSLGTVIYAVFNKGKPIFEVNKQDIYKSFSRQLDQLSRLRSSSLTSIPEEVREHVKLLLNVTPTVRPDADQMTKIPFFDDVGAVTLQYFDTLFQRDNLQKSQFFKGLPKVLPKLPKRVIVQRILPCLTSEFVNPDMVPFVLPNVLLIAEECTKEEYVKLILPELGPVFKQQEPIQILLIFLQKMDLLLTKTPPDEIKNSVLPMVYRALEAPSIQIQELCLNIIPTFANLIDYPSMKNALIPRIKNACLQTSSLAVRVNSLVCLGKILEYLDKWFVLDDILPFLQQIPSKEPAVLMGILGIYKCTFTHKKLGITKEQLAGKVLPHLIPLSIENNLNLNQFSSFIAVIKEMLSRLESEHRTKLEQLHMMQEQQRSLDIGNQMSAPEETNVAHAGSQQIDKVFNNIGADLLTGGESENKEDGLQNKQKRASLTLEEKQKLAKEQEQAQKLKSQQPLKPQPHTPIVPIKQTKDLTDTLMDNMTSLSSLSVSTPKLSASSTFTSVPSTGLSMMFSTPIDNTKRNLTNGLNANMGFQTSGFNMPVNPNQNFFSGTSTAGVTTMTLGAAPTLSNYSSLSVPSAGVKQAQQRPTDMSALNNLFGPQKPKVSMNQLSQQKPNQWLSQFVPPPGSPGLGNAAMGTQVNVIGQTAFGMQGNPFFNPQNFAQPPTTMTSSGSASNDLKDLFG", "length": 929, "header": "tr|A0A9J7J7E3-1|A0A9J7J7E3_CRIGR Isoform 1 of SCY1-like protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC103160199 PE=3 SV=1 CANONICAL=A0A9J7J7E3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KE02-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7E3/entry#A0A9J7KE02-1", "sequence": { "sequence": "MESMLNKLKSTVTKVTADVTSAVMGNPVTREFDVGRHIASGGNGLAWKIFNGTKKSTKQEVAVFVFDKKLIDKYQKFEKDQIIDSLKRGVQQLTRLRHPRLLTVQHPLEESRDCLAFCTEPVFASLANVLGNWENLPSSISPDIKDYKLYDVETKYGLLQVSEGLSFLHSSVKMVHGNVTPENIILNKSGAWKIMGFDFCVSSSNPSEQEPKFLCKEWDPNLPSLCLPNPEYLAPEYILSVSCETASDMYSLGTVIYAVFNKGKPIFEVNKQDIYKSFSRQLDQLSRLRSSSLTSIPEEVREHVKLLLNVTPTVRPDADQMTKIPFFDDVGAVTLQYFDTLFQRDNLQKSQFFKGLPKVLPKLPKRVIVQRILPCLTSEFVNPDMVPFVLPNVLLIAEECTKEEYVKLILPELGPVFKQQEPIQILLIFLQKMDLLLTKTPPDEIKNSVLPMVYRALEAPSIQIQELCLNIIPTFANLIDYPSMKNALIPRIKNACLQTSSLAVRVNSLVCLGKILEYLDKWFVLDDILPFLQQIPSKEPAVLMGILGIYKCTFTHKKLGITKEQLAGKVLPHLIPLSIENNLNLNQFSSFIAVIKEMLSRLESEHRTKLEQLHMMQEQQRSLDIGNQMSAPEETNVAHAGSQQIDKVFNNIGADLLTGGESENKEDGLQNKQKRASLTLEEKQKLAKEQEQAQKLKSQQPLKPQPHTPIVPIKQTKDLTDTLMDNMTSLSSLSVSTPKLSASSTFTSVPSTGLSMMFSTPIDNTKRNLTNGLNANMGFQTSGFNMPVNPNQNFFSGTSTAGVTTMTLGAAPTLSNYSSLSVPSAGVKQAQQRPTDMSALNNLFGPQKPKVSMNQLSQQKPNQWLSQFVPPPGSPGLGNAAMGTQESHVLTCTANRRSTRIRLSRPLPSYASLNSNF", "length": 917, "header": "tr|A0A9J7KE02-1|A0A9J7J7E3_CRIGR Computationally mapped isoform of SCY1-like protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC103160199 PE=3 SV=1 CANONICAL=A0A9J7J7E3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KE02", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KE02" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KE02", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KE02" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:103160199", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103160199", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "protein kinase activity", "id": "GO:0004672", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004672", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J7E3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7E3" } ], "pmid": "" }, { "name": "ATP binding", "id": "GO:0005524", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005524", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J7E3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7E3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 178, "end_pos": 180, "annotation": "n_glycosylation_sequon" }, { "start_pos": 187, "end_pos": 189, "annotation": "n_glycosylation_sequon" }, { "start_pos": 309, "end_pos": 311, "annotation": "n_glycosylation_sequon" }, { "start_pos": 51, "end_pos": 53, "annotation": "n_glycosylation_sequon" }, { "start_pos": 726, "end_pos": 728, "annotation": "n_glycosylation_sequon" }, { "start_pos": 768, "end_pos": 770, "annotation": "n_glycosylation_sequon" }, { "start_pos": 816, "end_pos": 818, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7J7E3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7E3" }, { "id": "PS50011", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50011" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Protein kinase", "eco_id": "ECO_0000259", "start_pos": 32, "end_pos": 327, "start_aa": "Phe", "end_aa": "Phe", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 178, "end_pos": 180 }, { "start_pos": 187, "end_pos": 189 }, { "start_pos": 309, "end_pos": 311 }, { "start_pos": 51, "end_pos": 53 }, { "start_pos": 726, "end_pos": 728 }, { "start_pos": 768, "end_pos": 770 }, { "start_pos": 816, "end_pos": 818 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7J4S1-1", "uniprot_ac": "A0A9J7J4S1", "uniprot_id": "A0A9J7J4S1_CRIGR", "mass": { "chemical_mass": 101690.0, "monoisotopic_mass": 101690.0 }, "refseq": { "ac": "XP_027248602", "name": "LOW QUALITY PROTEIN: potassium voltage-gated channel subfamily KQT member 5 isoform X3", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248602" }, "gene_names": [ { "name": "Kcnq5", "type": "recommended", "evidence": [ { "id": "A0A9J7J4S1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J4S1" } ] }, { "name": "Kcnq5", "type": "synonym", "evidence": [ { "id": "XP_027248602", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248602" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: potassium voltage-gated channel subfamily KQT member 5 isoform X3", "type": "synonym", "evidence": [ { "id": "XP_027248602", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248602" }, { "id": "A0A9J7J4S1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J4S1/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027248602", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248602" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J4S1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J4S1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Kcnq5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J4S1", "locus": {} } ], "crossref": [ { "id": "100773342", "url": "https://www.ncbi.nlm.nih.gov/gene/100773342", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003937", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003937", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR005821", "url": "https://www.ebi.ac.uk/interpro/entry/IPR005821", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013821", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013821", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100773342", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773342", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7J4S1", "url": "https://www.orthodb.org/?gene=A0A9J7J4S1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47735", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47735", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47735:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47735:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00520", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00520", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03520", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03520", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027248602", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248602", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "29463", "url": "https://www.rhea-db.org/rhea/29463", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7J4S1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J4S1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J4S1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J4S1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPRHHAGGEEGGAAGLWVRSGAAAAAAAAAAGGGAXGQGMKDVESGRGRVLLNSAAARGDGLLLLGTRAAALGGGGGGLRESRRGKQGARMSLLGKPLSYTSSQSCRRNVKYRRVQNYLYNVLERPRGWAFVYHAFVFLLVFGCLILSVFSTIPEHTKLASSCLLILEFVMIVVFGLEFIIRIWSAGCCCRYRGWQGRLRFARKPFCVIDTIVLIASIAVVSAKTQGNIFATSALRSLRFLQILRMVRMDRRGGTWKLLGSVVYAHSKELITAWYIGFLVLIFSSFLVYLVEKDANKEFSTYADALWWGTITLTTIGYGDKTPLTWLGRLLSAGFALLGISFFALPAGILGSGFALKVQEQHRQKHFEKRRNPAANLIQCVWRSYAADEKSVSIATWKPHLKALHTCSPTNQKLSFKERVRMASPRGQSIKSRQASVGDRRSPSTDITAEGSPTKVQKSWSFNDRTRFRPSLRLKSSQPKPVIDADTALGTDDVYDEKGCQCDVSVEDLTPPLKTVIRAIRIMKFHVAKRKFKETLRPYDVKDVIEQYSAGHLDMLCRIKSLQTRVDQILGKGQITSDKKSREKITAEHETTDDVSMLGRVVKVEKQVQSIESKLDCLLDIYQQVLRKGSASALTLASFQIPPFECEQTSDYQSPVDSKDLSSSAQNSGCLTRSASANISRGLQFILTPNEFSAQTFYALSPTMHSQATQVPMSQNDGSSMAATNNIANQISAAPKPAAPTTLQIPPPLPAIKHLSRPETLHPNPTGLQESISDVTTCLVASKENVQFAQSNLTKDRSLRKSFDMGGETLLSVRPMVPKDLGKSLSVQNLIRSTEELNLQFSGSESSGSRGSQDFYPKWRESKLFITDEELGAEEAETDTFDVTPQPAGEAAFTSDSLRTGRSRSSQNICKTGDSTEALSLPHVKLN", "length": 927, "header": "tr|A0A9J7J4S1-1|A0A9J7J4S1_CRIGR Isoform 1 of LOW QUALITY PROTEIN: potassium voltage-gated channel subfamily KQT member 5 isoform X3 OS=Cricetulus griseus OX=10029 GN=Kcnq5 PE=4 SV=1 CANONICAL=A0A9J7J4S1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7J4S1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J4S1/entry#A0A9J7J4S1-1", "sequence": { "sequence": 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"##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027245080", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027245080" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J596", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J596" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC103158560", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J596", "locus": {} } ], "crossref": [ { "id": "103158560", "url": "https://www.ncbi.nlm.nih.gov/gene/103158560", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002213", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002213", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050271", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050271", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:103158560", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103158560", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7J596", "url": "https://www.orthodb.org/?gene=A0A9J7J596", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR48043", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48043", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR48043:SF137", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR48043:SF137", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00201", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00201", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027245080", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027245080", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7J596", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J596", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J596-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J596-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASEKWVMAVFVVQLCCDGYGLCDKVLVWPCDMSHWLNLKTILEELVDRGHEVTVLKYSIIMMDQNKHSALHFENIRLSNGEEASKIHINELVNLVVNVIPNLPVWRGATKFQEFFFHLTXQDICRSVLYNQTFMNELQDTKCDVMVINPVVPCGELMAELFQVPFVNTLSFSNGYTLEKYCGKLPVPLCYVPVNMGELTDNMTFTEKVINMILSLFFEFGLQQYDFAFWDNFYSETLGRSTIFCETIGKAEIWLIRTYWDFEYPRPHLPNFQFVGGLHCKSAKPLPKSVKKILGIS", "length": 297, "header": "tr|A0A9J7J596-1|A0A9J7J596_CRIGR Isoform 1 of LOW QUALITY PROTEIN: UDP-glucuronosyltransferase 2A3-like OS=Cricetulus griseus OX=10029 GN=LOC103158560 PE=3 SV=1 CANONICAL=A0A9J7J596-1" }, "isoforms": [ { "isoform_ac": "A0A9J7J596-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J596/entry#A0A9J7J596-1", "sequence": { "sequence": "MASEKWVMAVFVVQLCCDGYGLCDKVLVWPCDMSHWLNLKTILEELVDRGHEVTVLKYSIIMMDQNKHSALHFENIRLSNGEEASKIHINELVNLVVNVIPNLPVWRGATKFQEFFFHLTXQDICRSVLYNQTFMNELQDTKCDVMVINPVVPCGELMAELFQVPFVNTLSFSNGYTLEKYCGKLPVPLCYVPVNMGELTDNMTFTEKVINMILSLFFEFGLQQYDFAFWDNFYSETLGRSTIFCETIGKAEIWLIRTYWDFEYPRPHLPNFQFVGGLHCKSAKPLPKSVKKILGIS", "length": 297, "header": "tr|A0A9J7J596-1|A0A9J7J596_CRIGR Isoform 1 of LOW QUALITY PROTEIN: UDP-glucuronosyltransferase 2A3-like OS=Cricetulus griseus OX=10029 GN=LOC103158560 PE=3 SV=1 CANONICAL=A0A9J7J596-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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indel internal stop codons :: corrected 3 genomic stop codon ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. 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##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_016834731", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016834731" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J657", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J657" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Mss51", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J657", "locus": {} } ], "crossref": [ { "id": "100764691", "url": "https://www.ncbi.nlm.nih.gov/gene/100764691", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002893", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002893", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046824", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046824", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR052839", "url": "https://www.ebi.ac.uk/interpro/entry/IPR052839", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100764691", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764691", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7J657", "url": "https://www.orthodb.org/?gene=A0A9J7J657", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46920", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46920", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46920:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46920:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01753", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01753", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF20179", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF20179", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_016834731", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016834731", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7J657", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J657", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J657-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J657-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAPRLQRRKPKKSSPVTPMVVIPPTDVSLEPPSLSKPGPSIDALGFISLDNNVPGLSQLILQKLNMKSYEEYKLVVDGGTPVSSFGFQSLQEMFQRMEDTFRFCAYCKALPYGLSDQKVLRHCKRCRNVYYCDTECQRSDWPAHRKVCQVLRLVAVDRVMEWLLVTGDFVLPSGPWPWPAEEIHDWDTWFSIRGLQLESTMNAVLSSHAMTMLWANLGRPRPEPDVLHSSLKRLMTDVLSRPLTLGLGLRTLAIDAGKTGGCTLHVVGASHVETFLIRSGDYDELGYMFPEHLGLHVIMVGVDVSTNLLQNSSPLPLEPGTIQLSGHKALYHDFWEEQIETGNLAHPDLVAAFHPGFHASPVLMEAWLPTLLLLRDYEIPTMITVYSQQELEASLQILVNLDMHIIACGANPFTSLKPEQVYSNPNKQPVYSSAYYIMFLGSSSCQLDKKQLEKKAG", "length": 457, "header": "tr|A0A9J7J657-1|A0A9J7J657_CRIGR Isoform 1 of MYND-type domain-containing protein OS=Cricetulus griseus OX=10029 GN=Mss51 PE=4 SV=1 CANONICAL=A0A9J7J657-1" }, "isoforms": [ { "isoform_ac": "A0A9J7J657-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J657/entry#A0A9J7J657-1", "sequence": { "sequence": "MAPRLQRRKPKKSSPVTPMVVIPPTDVSLEPPSLSKPGPSIDALGFISLDNNVPGLSQLILQKLNMKSYEEYKLVVDGGTPVSSFGFQSLQEMFQRMEDTFRFCAYCKALPYGLSDQKVLRHCKRCRNVYYCDTECQRSDWPAHRKVCQVLRLVAVDRVMEWLLVTGDFVLPSGPWPWPAEEIHDWDTWFSIRGLQLESTMNAVLSSHAMTMLWANLGRPRPEPDVLHSSLKRLMTDVLSRPLTLGLGLRTLAIDAGKTGGCTLHVVGASHVETFLIRSGDYDELGYMFPEHLGLHVIMVGVDVSTNLLQNSSPLPLEPGTIQLSGHKALYHDFWEEQIETGNLAHPDLVAAFHPGFHASPVLMEAWLPTLLLLRDYEIPTMITVYSQQELEASLQILVNLDMHIIACGANPFTSLKPEQVYSNPNKQPVYSSAYYIMFLGSSSCQLDKKQLEKKAG", "length": 457, "header": "tr|A0A9J7J657-1|A0A9J7J657_CRIGR Isoform 1 of MYND-type domain-containing protein OS=Cricetulus griseus OX=10029 GN=Mss51 PE=4 SV=1 CANONICAL=A0A9J7J657-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 17, "start_aa": "Thr", "end_pos": 17, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr17", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7J657", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J657" }, { "id": "PS50865", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50865" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "MYND-type", "eco_id": "ECO_0000259", "start_pos": 104, "end_pos": 148, "start_aa": "Cys", "end_aa": "Cys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 17 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 311, "end_pos": 313 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": 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"count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7J659-1", "uniprot_ac": "A0A9J7J659", "uniprot_id": "A0A9J7J659_CRIGR", "mass": { "chemical_mass": 30983.0, "monoisotopic_mass": 30983.0 }, "refseq": { "ac": "XP_027246485", "name": "LOW QUALITY PROTEIN: potassium channel regulatory protein isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027246485" }, "gene_names": [ { "name": "Kcnrg", "type": "recommended", "evidence": [ { "id": "A0A9J7J659", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J659" } ] }, { "name": "Kcnrg", "type": "synonym", "evidence": [ { "id": "XP_027246485", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027246485" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: potassium channel regulatory protein isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027246485", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027246485" }, { "id": "A0A9J7J659", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J659/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 5% of CDS bases frameshifts :: corrected 4 indels ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027246485.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027246485", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027246485" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J659", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J659" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Kcnrg", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J659", "locus": {} } ], "crossref": [ { "id": "100753429", "url": "https://www.ncbi.nlm.nih.gov/gene/100753429", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003131", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003131", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100753429", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753429", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7J659", "url": "https://www.orthodb.org/?gene=A0A9J7J659", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14499", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14499", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14499:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14499:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02214", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02214", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027246485", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027246485", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7J659", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J659", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J659-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J659-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVKLKARGLASNEKLGRKSSQDLGGKIFTTRLSTLKQFPTSLLAGLLDGRDQEFKTVDGQIFVDRDGALFSFILDFLRNELVLXSDFSEYFRLQREALFYXLDSLVDLLSQHLLQSRPAVMEVHFLNQNNPAFFRVFSFCSKTIELLTRRITVFVEQPAALPRSSNPFPPQMTLLPLPPQRPSHHDLVFYCGSDGIIENHTGVRYISIKPDNKKMTNGTNVFVLLIDTLLKEGFHLVSTRTSASGDKSECYVFEGIPGGNKTPKPETTTIPASSQK", "length": 276, "header": "tr|A0A9J7J659-1|A0A9J7J659_CRIGR Isoform 1 of LOW QUALITY PROTEIN: potassium channel regulatory protein isoform X2 OS=Cricetulus griseus OX=10029 GN=Kcnrg PE=4 SV=1 CANONICAL=A0A9J7J659-1" }, "isoforms": [ { "isoform_ac": "A0A9J7J659-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J659/entry#A0A9J7J659-1", "sequence": { "sequence": "MVKLKARGLASNEKLGRKSSQDLGGKIFTTRLSTLKQFPTSLLAGLLDGRDQEFKTVDGQIFVDRDGALFSFILDFLRNELVLXSDFSEYFRLQREALFYXLDSLVDLLSQHLLQSRPAVMEVHFLNQNNPAFFRVFSFCSKTIELLTRRITVFVEQPAALPRSSNPFPPQMTLLPLPPQRPSHHDLVFYCGSDGIIENHTGVRYISIKPDNKKMTNGTNVFVLLIDTLLKEGFHLVSTRTSASGDKSECYVFEGIPGGNKTPKPETTTIPASSQK", "length": 276, "header": "tr|A0A9J7J659-1|A0A9J7J659_CRIGR Isoform 1 of LOW QUALITY PROTEIN: potassium channel regulatory protein isoform X2 OS=Cricetulus griseus OX=10029 GN=Kcnrg PE=4 SV=1 CANONICAL=A0A9J7J659-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J659", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J659" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J659", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J659" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100753429", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753429", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "endoplasmic reticulum", "id": "GO:0005783", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005783", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J659", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J659" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "protein homooligomerization", "id": "GO:0051260", "url": 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"MPAYSQFSPSTLVGQQFGAIGVAGSSLTSFGTEASSSSILSQNSSSPPCFLYAFFPLKRPGILDRRKCSWKPWMVALTTTSVLLALSIIIGLLVYFLVYEQKSHYYQGSFRIPSITYSPDLSIEQSRHQTSLKQKLINEIDMIFQRSSLKYHYVKSHVVNFRPSNDGLKADILIKFQFPHNNVGTLKKQADSILYKKLQSTQSSLKRDISLPHLREINAAQAENILNSDCGLGMEYPPTARIADGKPAEKASWPWQSSLQVDGIHLCGASLIGSQWLLTSAHCFDTYKNPKLWTVSFGTTLSHPLMTRKIASIIIHENYASHKHDDDIAVVKLSSPILFSENLRRVCLPDATFQVLPKSKVFVTGWGALKANGPFPNSLQEVEIEIISNDVCNQVNVYGGAVSSAMICAGFLTGKLDACEGDSGGPLVISHDRNIWYLLGIVSWGIDCGKENKPGIYTRVTHYRNWIKSKTNI", "length": 473, "header": "tr|A0A9J7J664-1|A0A9J7J664_CRIGR Isoform 1 of Transmembrane protease serine 11G OS=Cricetulus griseus OX=10029 GN=LOC100763999 PE=4 SV=1 CANONICAL=A0A9J7J664-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7J6A0-1", "uniprot_ac": "A0A9J7J6A0", "uniprot_id": "A0A9J7J6A0_CRIGR", "mass": { "chemical_mass": 64178.0, "monoisotopic_mass": 64178.0 }, "refseq": { "ac": "XP_003503371", "name": "phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503371" }, "gene_names": [ { "name": "LOC100753123", "type": "recommended", "evidence": [ { "id": "A0A9J7J6A0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6A0" } ] }, { "name": "LOC100753123", "type": "synonym", "evidence": [ { "id": "XP_003503371", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503371" } ] } ], "protein_names": [ { "name": "Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2", "type": "synonym", "evidence": [ { "id": "A0A9J7J6A0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6A0/entry#names_and_taxonomy" } ] }, { "name": "phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2", "type": "synonym", "evidence": [ { "id": "XP_003503371", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503371" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 6% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613958.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003503371", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003503371" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J6A0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6A0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100753123", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6A0", "locus": {} } ], "crossref": [ { "id": "A0A9J7J6A0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7J6A0", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd14510", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd14510", "database": "CDD", "categories": [ "Protein 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"database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J6A0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6A0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLSGVVTAAGNKRIKEALGKPDVSTVSSGLKTVCSTVSTSILIASSDITSDIQEESINKSKLRQVSKFYDGDECIDIRKTYHNTIKEVVLFLVSSVAFRVFGIMLIFLDIVFVSIDLHLVKNQLYIPLEYRSVSFAIALFFLVDVLLRVYVEGRQQYFSDLLNTLDAVVIGVTVFIAFTYIFYDKKFLGDNPRLAVLFRPLWLLILVRILQLAHQKRHLEKLTRRLVSGNKRRYKKDGFDLDLTYVTERIIAMSFPSSGRQSFYRNPIKEVVRFLDTKHPNHYQVYNLCSENSYDPKYFHYRVRRIMIDDHNVPTLEEMLLFSKEVNDWMAQHPENVVAIHCKGGKGRTGTMVCACLIASEIVLNAKESLYFFGERRTDKASSSKFQGVETPSQNRYVKYFEKLKISYQWTLPARKMLMIKRFILYSIHGVGKGDGSDLEVQVVMWQETVFSCFSSKNCMIFHDVETDRVIINVFNCPALYDDVKVKFLSPNLPSYYDDCPFFFWFHTAFIRNNRLYLPRHELDNTHKSKTWKIYSPKFAVEVYFAEPMPRVL", "length": 553, "header": "tr|A0A9J7J6A0-1|A0A9J7J6A0_CRIGR Isoform 1 of Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 OS=Cricetulus griseus OX=10029 GN=LOC100753123 PE=4 SV=1 CANONICAL=A0A9J7J6A0-1" }, 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"keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027244026", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244026" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J6F0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6F0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "CUNH2orf73", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6F0", "locus": {} } ], "crossref": [ { "id": "A0A9J7J6F0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7J6F0", "database": "AlphaFoldDB", "categories": [] }, { "id": "113832401", "url": "https://www.ncbi.nlm.nih.gov/gene/113832401", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR031365", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031365", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113832401", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113832401", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7J6F0", "url": "https://www.orthodb.org/?gene=A0A9J7J6F0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR35087", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35087", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR35087:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR35087:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15667", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15667", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027244026", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244026", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7J6F0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6F0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J6F0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6F0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEGEEKQQQHKIEDAGIACITEKKEEIKHEKIPGKITQHLKPSVDRRRVNYAKFMHTNMRLYNEPVPYIDSKEPAKQKQWWLQSEEAEPVSQPPYDTKSTQRSDFQKPACPLVLPVKHKMQKPSCGIVPLTCLSSSGEQENNFEEYISFIHQYDSRKTPNEPIRGKRHGTFVQRAIKPPTMSIIPKEPEVLPNAPGSCSSEQPQRTEKENVSRDSVPSPGTEFPRTAGDLETEGSPGPQAQNLECG", "length": 246, "header": "tr|A0A9J7J6F0-1|A0A9J7J6F0_CRIGR Isoform 1 of Uncharacterized protein C2orf73 homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=CUNH2orf73 PE=4 SV=1 CANONICAL=A0A9J7J6F0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7J6F0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6F0/entry#A0A9J7J6F0-1", "sequence": { "sequence": "MEGEEKQQQHKIEDAGIACITEKKEEIKHEKIPGKITQHLKPSVDRRRVNYAKFMHTNMRLYNEPVPYIDSKEPAKQKQWWLQSEEAEPVSQPPYDTKSTQRSDFQKPACPLVLPVKHKMQKPSCGIVPLTCLSSSGEQENNFEEYISFIHQYDSRKTPNEPIRGKRHGTFVQRAIKPPTMSIIPKEPEVLPNAPGSCSSEQPQRTEKENVSRDSVPSPGTEFPRTAGDLETEGSPGPQAQNLECG", "length": 246, "header": "tr|A0A9J7J6F0-1|A0A9J7J6F0_CRIGR Isoform 1 of Uncharacterized protein C2orf73 homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=CUNH2orf73 PE=4 SV=1 CANONICAL=A0A9J7J6F0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J6F0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6F0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J6F0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6F0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:113832401", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113832401", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 210, "end_pos": 212, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 210, "end_pos": 212 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7J6G6-1", "uniprot_ac": "A0A9J7J6G6", "uniprot_id": "A0A9J7J6G6_CRIGR", "mass": { "chemical_mass": 93091.0, "monoisotopic_mass": 93091.0 }, "refseq": { "ac": "XP_003514297", "name": "breast cancer anti-estrogen resistance protein 3 homolog isoform X4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003514297" }, "gene_names": [ { "name": "LOC100758812", "type": "recommended", "evidence": [ { "id": "A0A9J7J6G6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6G6" } ] }, { "name": "LOC100758812", "type": "synonym", "evidence": [ { "id": "XP_003514297", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003514297" } ] } ], "protein_names": [ { "name": "Breast cancer anti-estrogen resistance protein 3 homolog isoform X5", "type": "synonym", "evidence": [ { "id": "A0A9J7J6G6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6G6/entry#names_and_taxonomy" } ] }, { "name": "breast cancer anti-estrogen resistance protein 3 homolog isoform X4", "type": "synonym", "evidence": [ { "id": "XP_003514297", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003514297" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## assembly gap :: added 1975 transcript bases to patch genome assembly gap ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003616458.1) and transcript sequence (IACG01087676.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_003514297.2. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003514297", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003514297" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J6G6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6G6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100758812", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6G6", "locus": {} } ], "crossref": [ { "id": "A0A9J7J6G6", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7J6G6", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd10337", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd10337", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100758812", "url": "https://www.ncbi.nlm.nih.gov/gene/100758812", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000980", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000980", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001895", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001895", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023578", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023578", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036860", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036860", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036964", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036964", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044102", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044102", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051853", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051853", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100758812", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758812", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7J6G6", "url": "https://www.orthodb.org/?gene=A0A9J7J6G6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14247", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14247", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14247:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14247:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00017", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00017", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00617", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00617", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003514297", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003514297", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7J6G6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6G6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J6G6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6G6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JBI7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBI7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JBI7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBI7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAGKFASLPRNMVVNHQFPLASSMDLLSSRSPLAEHRADTYQDVSIHGTLPRKKKGPPPIRSCDNVSHMGTLPHSKSPRQSSPLTQDIIQENPLQDWKGETFTFRDPYLLDPTLEYVKFSKERHIMDRTPERLKKELEEELLLSSEDLRSHAWYHGRIPRQVSENLVQRDGDFLVRDSLSSPGNFVLTCQWKNLAQHFKINRTVLRLSEAYSRVQYQFEMESFDSIPGLVRCYVGNRRPISQQSGAIIFQPINRTVPLWCLEERYGTSPGFGREGSFTDGRPDMAKRFSLTTGSIQAREHSLPRGNLLRNKEKSGSQPACLDHVPDRRALVLKAHQSESHLPIGCKLPPQSPGMDTSPCPSSPVFRTGSEPTLSPALVRRFSSDTRAGEALRGSDSQLCPKPPPKPCKVPFLKVPPSPSAWLNSEANYCELNPAFAVSYDREAKLLSYAHSSREELLTAKHNGASGARNSGVNYLILDGDDPARPWDPLAAQRIDEGQEDKTTFVPPIMETVSSFRPNDFESKLLPPENKPLETAMLKHAKELFTNNDARVIAQHMLSVDCKVARILEVSEDMKRRMGVSSGLELITLPHGRQLRLDIIERHNTMAIGIAVDILGCTGTLENRAGTLNKIIQVAVELKDAMGDLYSFSAIMKALEMPQITRLEKTWTALRHHYTQTAVLYEKQLKPFSKALHEGRESKYVPPSSVSVPLLMPLVTLMERQAVTFEGTDMWEKNDESCEIMLNHLATARFMAEASESYRMNAERILADFQPDEEMSEILKTEFQMRLLWGSKGAEVNQTERYEKFNQILTALSRKLEPPSVKQAEL", "length": 826, "header": "tr|A0A9J7J6G6-1|A0A9J7J6G6_CRIGR Isoform 1 of Breast cancer anti-estrogen resistance protein 3 homolog isoform X5 OS=Cricetulus griseus OX=10029 GN=LOC100758812 PE=4 SV=1 CANONICAL=A0A9J7J6G6-1" }, "isoforms": [ { "isoform_ac": "A0A9J7J6G6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6G6/entry#A0A9J7J6G6-1", "sequence": { "sequence": "MAAGKFASLPRNMVVNHQFPLASSMDLLSSRSPLAEHRADTYQDVSIHGTLPRKKKGPPPIRSCDNVSHMGTLPHSKSPRQSSPLTQDIIQENPLQDWKGETFTFRDPYLLDPTLEYVKFSKERHIMDRTPERLKKELEEELLLSSEDLRSHAWYHGRIPRQVSENLVQRDGDFLVRDSLSSPGNFVLTCQWKNLAQHFKINRTVLRLSEAYSRVQYQFEMESFDSIPGLVRCYVGNRRPISQQSGAIIFQPINRTVPLWCLEERYGTSPGFGREGSFTDGRPDMAKRFSLTTGSIQAREHSLPRGNLLRNKEKSGSQPACLDHVPDRRALVLKAHQSESHLPIGCKLPPQSPGMDTSPCPSSPVFRTGSEPTLSPALVRRFSSDTRAGEALRGSDSQLCPKPPPKPCKVPFLKVPPSPSAWLNSEANYCELNPAFAVSYDREAKLLSYAHSSREELLTAKHNGASGARNSGVNYLILDGDDPARPWDPLAAQRIDEGQEDKTTFVPPIMETVSSFRPNDFESKLLPPENKPLETAMLKHAKELFTNNDARVIAQHMLSVDCKVARILEVSEDMKRRMGVSSGLELITLPHGRQLRLDIIERHNTMAIGIAVDILGCTGTLENRAGTLNKIIQVAVELKDAMGDLYSFSAIMKALEMPQITRLEKTWTALRHHYTQTAVLYEKQLKPFSKALHEGRESKYVPPSSVSVPLLMPLVTLMERQAVTFEGTDMWEKNDESCEIMLNHLATARFMAEASESYRMNAERILADFQPDEEMSEILKTEFQMRLLWGSKGAEVNQTERYEKFNQILTALSRKLEPPSVKQAEL", "length": 826, "header": "tr|A0A9J7J6G6-1|A0A9J7J6G6_CRIGR Isoform 1 of Breast cancer anti-estrogen resistance protein 3 homolog isoform X5 OS=Cricetulus griseus OX=10029 GN=LOC100758812 PE=4 SV=1 CANONICAL=A0A9J7J6G6-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JBI7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6G6/entry#A0A9J7JBI7-1", "sequence": { "sequence": "MPKECNAFHALSAALCCFYHRKSFLGVKFSKERHIMDRTPERLKKELEEELLLSSEDLRSHAWYHGRIPRQVSENLVQRDGDFLVRDSLSSPGNFVLTCQWKNLAQHFKINRTVLRLSEAYSRVQYQFEMESFDSIPGLVRCYVGNRRPISQQSGAIIFQPINRTVPLWCLEERYGTSPGFGREGSFTDGRPDMAKRFSLTTGSIQAREHSLPRGNLLRNKEKSGSQPACLDHVPDRRALVLKAHQSESHLPIGCKLPPQSPGMDTSPCPSSPVFRTGSEPTLSPALVRRFSSDTRAGEALRGSDSQLCPKPPPKPCKVPFLKVPPSPSAWLNSEANYCELNPAFAVSYDREAKLLSYAHSSREELLTAKHNGASGARNSGVNYLILDGDDPARPWDPLAAQRIDEGQEDKTTFVPPIMETVSSFRPNDFESKLLPPENKPLETAMLKHAKELFTNNDARVIAQHMLSVDCKVARILEVSEDMKRRMGVSSGLELITLPHGRQLRLDIIERHNTMAIGIAVDILGCTGTLENRAGTLNKIIQVAVELKDAMGDLYSFSAIMKALEMPQITRLEKTWTALRHHYTQTAVLYEKQLKPFSKALHEGRESKYVPPSSVSVPLLMPLVTLMERQAVTFEGTDMWEKNDESCEIMLNHLATARFMAEASESYRMNAERILADFQPDEEMSEILKTEFQMRLLWGSKGAEVNQTERYEKFNQILTALSRKLEPPSVKQAEL", "length": 735, "header": "tr|A0A9J7JBI7-1|A0A9J7JBI7_CRIGR 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], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027251724.1. 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"https://www.ebi.ac.uk/interpro/entry/IPR031478", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039062", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039062", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100766516", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766516", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "DKMKLTV", "url": "https://omabrowser.org/oma/group/DKMKLTV/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7J6M2", "url": "https://www.orthodb.org/?gene=A0A9J7J6M2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14421", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14421", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14421:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14421:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15743", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15743", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027251724", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027251724", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7J6M2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6M2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J6M2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6M2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KDU0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDU0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7KDU0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDU0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSLNPSRPSSSELVELHVFYVPEGSWNYKLNTISIEVINKCISAGFIRVSPQLTLQALRERLGEFLGVDAVAEKFLFLKCIGNNLAVVKEKQESELKLKSFAPPYALQPELYLLPVIDHLGNVYSASSTVTLDEQHSNNDATTEINGTIHRPDSITLSKDEPGDPSVLENTWKEEASAEESQTAQNHGGSSELPGSLEESSNCFGNVKSPSLWKEEEDGGNTGVNKPQAKPVGDKEHITLPDLIDFPSFPSQRVSSRLTDSSLLKIEREKIIEQMKQVKEERKYLESIREDLIKKVEKLFEQNKSKRYHAGDNWKKKYFDTKKVTASLEEVLTKLREDLELYYKKLLMQLEAREIKMRPRNLANISDSKNYLIIQITEVQHAIDQLKRKLDTDKMKLILEVKMRKQAVSDLQTLKAELTQKKMTSFRSPLFSGGVPT", "length": 437, "header": "tr|A0A9J7J6M2-1|A0A9J7J6M2_CRIGR Isoform 1 of Spermatogenesis-associated protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Spata1 PE=4 SV=1 CANONICAL=A0A9J7J6M2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7J6M2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6M2/entry#A0A9J7J6M2-1", "sequence": { "sequence": "MSLNPSRPSSSELVELHVFYVPEGSWNYKLNTISIEVINKCISAGFIRVSPQLTLQALRERLGEFLGVDAVAEKFLFLKCIGNNLAVVKEKQESELKLKSFAPPYALQPELYLLPVIDHLGNVYSASSTVTLDEQHSNNDATTEINGTIHRPDSITLSKDEPGDPSVLENTWKEEASAEESQTAQNHGGSSELPGSLEESSNCFGNVKSPSLWKEEEDGGNTGVNKPQAKPVGDKEHITLPDLIDFPSFPSQRVSSRLTDSSLLKIEREKIIEQMKQVKEERKYLESIREDLIKKVEKLFEQNKSKRYHAGDNWKKKYFDTKKVTASLEEVLTKLREDLELYYKKLLMQLEAREIKMRPRNLANISDSKNYLIIQITEVQHAIDQLKRKLDTDKMKLILEVKMRKQAVSDLQTLKAELTQKKMTSFRSPLFSGGVPT", "length": 437, "header": "tr|A0A9J7J6M2-1|A0A9J7J6M2_CRIGR Isoform 1 of Spermatogenesis-associated protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Spata1 PE=4 SV=1 CANONICAL=A0A9J7J6M2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7KDU0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6M2/entry#A0A9J7KDU0-1", "sequence": { "sequence": "MSLNPSRPSSSELVELHVFYVPEGSWNYKLNTISIEVINKCISAGFIRVSPQLTLQALRERLGEFLGVDAVAEKFLFLKCIGNNLAVVKEKQESELKLKSFAPPYALQPELYLLPVIDHLGNVYSASSTVTLDEQHSNNDATTEINGTIHRPDSITLSKDEPGDPSVLENTWKEEASAEESQTAQNHGGSSELPGSLEESSNCFGNVKSPSLWKEEEDGGNTGVNKPQAKPRVSSRLTDSSLLKIEREKIIEQMKQVKEERKYLESIREDLIKKVEKLFEQNKSKRYHAGDNWKKKYFDTKKVTASLEEVLTKLREDLELYYKKLLMQLEAREIKMRPRNLANISDSKNYLIIQITEVQHAIDQLKRKLDTDKMKLILEVKMRKQAVSDLQTLKAELTQKKMTSFRSPLFSGGVPT", "length": 416, "header": "tr|A0A9J7KDU0-1|A0A9J7J6M2_CRIGR Computationally mapped isoform of Spermatogenesis-associated protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Spata1 PE=4 SV=1 CANONICAL=A0A9J7J6M2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KDU0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDU0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7KDU0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7KDU0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100766516", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766516", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "Q5VX52-1", "protein_name": "Spermatogenesis-associated protein 1", "gene_name": "SPATA1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKKDKKRNKIPIDNYPIQTLVNMSLNPSRPSSSELVELHVFYVPEGSWNYKLNTISTEVVNKFISAGFLRVSPQLTLRALRERLGEFLGEDAIAEKFLFLKCIGNNLAVVKEKQESELKLKSFAPPYALQPELYLLPVMDHLGNVYSPSTVILDERQTNNGVNEADGTIHRPISVTLFKEELGRDPSLLENTLKELPNKNQEEAGGKATAEKSQIAKNQIGNSELPGSLEDSNNDCFGTKKSQCLWENEDDTAISRRQDNQTAEKEYITLPDHPSLPCQPVLSSGITDISLLQTEREKIIKQMKQVKEERRYLERNREELVKTVEKLFEQSKLKRYHAYNGWKKKYLETKKVTASMEEVLTKLREDLELYYKKLLMQLEAREIKMRPKNLANITDSKNYLIIQITEVQHAIDQLKRKLDTDKMKLIVEVKMRKQAVSDLRTLKTELAQKKKIIHLYNLN", "length": 459 }, "evidence": [ { "id": "A0A9J7J6M2", "url": "https://omabrowser.org/oma/group/A0A9J7J6M2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q6AY22-1", "protein_name": "Spermatogenesis-associated protein 1", "gene_name": "Spata1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSLNPSRPSSSELVELHVFYVPEGSWNYKLNTISIEVINNFISAGFIRVSPQLTLQALRERLGEFLGVDAVAEKFLFLKCIGNNLAVVKEKQESELKLKSFAPPYALQPELYLLPVIDHLGNVYSASTVNLDEQQSVDDTMEIDGTIHRPDSLSLSKDEPGDPSLLENTWRDFPNHEEAEESQPTQQHFGNPRLPGSLEESDDCLGNVKSPFLWKNNDEDEGEEDDKATINRRQAKLVCDKEHSALPDLIDFPSFPSQRVSSRLVDTSLLKIEREKIIEQMKQVKEERKYLENIREELIKKVEKLFEQSKSKRYHACDSWKKKYFDTKKVTASLEEVLTKLREDLELYYKKLLMQLEAREIKMRPRNLANISDSKNYLIIQITEVQHAIDQLKRKLDTDKMKLILEVKMRKQAASDLQTLRADLTQKKMGTPFRSPIFSGSVPT", "length": 444 }, "evidence": [ { "id": "A0A9J7J6M2", "url": "https://omabrowser.org/oma/group/A0A9J7J6M2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9D5R4-1", "protein_name": "Spermatogenesis-associated protein 1", "gene_name": "Spata1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSLNPSRPSSSELVELHVFYVPEGSWNYKLNTISIEVINNFISAGFIRVSPQLTLQALRERLGEFLGVDAVAEKFLFLKCIGNNLAVVKEKQESELKLKSFAPPYALQPELYLLPVIDHLGNVYSASTVTLDEQESINDTTEINGTIYRPDSVSLSKDEPGNPSLLENTWRDFTNQEEAEESQPTQNHFGNSKLLGSLEESNDYFGNLKSPFLWKNDDEEEDEEKDNAALSRRQATLVCDKECTALPDLIDFPSFPSQRVSSRLTDTSLLKIEREKIIEQMKQVKEERKYLENIREELIKKVDKLFEQNKSKRYHASDSWKKKYLDTKKVTASLEEVLTKLREDLELYYKKLLMQLEAREIKMRPRNLANISDSKNYLIIQITEVQHAIDQLKRKLDTDKMKLILEVKMRKQAVSDLQTLKADLTQKKMGAPFRPPMFSGSVPT", "length": 444 }, "evidence": [ { "id": "A0A9J7J6M2", "url": "https://omabrowser.org/oma/group/A0A9J7J6M2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 146, "end_pos": 148, "annotation": "n_glycosylation_sequon" }, { "start_pos": 303, "end_pos": 305, "annotation": "n_glycosylation_sequon" }, { "start_pos": 364, "end_pos": 366, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7J6M2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6M2" }, { "id": "PF15743", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15743" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Spermatogenesis-associated protein 1 C-terminal", "eco_id": "ECO_0000259", "start_pos": 273, "end_pos": 422, "start_aa": "Glu", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 146, "end_pos": 148 }, { "start_pos": 303, "end_pos": 305 }, { "start_pos": 364, "end_pos": 366 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7J6N1-1", "uniprot_ac": "A0A9J7J6N1", "uniprot_id": "A0A9J7J6N1_CRIGR", "mass": { "chemical_mass": 189018.0, "monoisotopic_mass": 189018.0 }, "refseq": { "ac": "XP_007651791", "name": "maestro heat-like repeat-containing protein family member 2A isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007651791" }, "gene_names": [ { "name": "Mroh2a", "type": "recommended", "evidence": [ { "id": "A0A9J7J6N1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6N1" } ] }, { "name": "Mroh2a", "type": "synonym", "evidence": [ { "id": "XP_007651791", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007651791" } ] } ], "protein_names": [ { "name": "Maestro heat-like repeat-containing protein family member 2A isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7J6N1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6N1/entry#names_and_taxonomy" } ] }, { "name": "maestro heat-like repeat-containing protein family member 2A isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007651791", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007651791" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003615848.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 27, 2016 this sequence version replaced XP_007651791.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007651791", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007651791" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J6N1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6N1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Mroh2a", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6N1", "locus": {} } ], "crossref": [ { "id": "100756011", "url": "https://www.ncbi.nlm.nih.gov/gene/100756011", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045206", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045206", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR048465", "url": "https://www.ebi.ac.uk/interpro/entry/IPR048465", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055406", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055406", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055408", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055408", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR056282", "url": "https://www.ebi.ac.uk/interpro/entry/IPR056282", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100756011", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756011", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "HHNPEVK", "url": "https://omabrowser.org/oma/group/HHNPEVK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7J6N1", "url": "https://www.orthodb.org/?gene=A0A9J7J6N1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23120", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23120", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23120:SF14", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23120:SF14", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF21047", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF21047", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23210", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23210", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23221", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23221", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23227", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23227", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007651791", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007651791", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7J6N1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6N1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J6N1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6N1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEKAATKLNEDMEETEHHGPLEPEDDGTFFQVTNLLNIMDSESTKTDTTGPGLDMRKTLASVIITEKATTDPCVVMNALIRCLQMPETSTQRKMIIYNILQEIIQQEGELEEHCVQRLVAIASKEMRDTTEMEGFETAEVASETLVALSRNHFSLVMYELQHHLKPLNLTDEFVIVTLAKLANGNVFEFMPYMGITLATIFTMLRLANEAKMRQVICSAMETFCETVQFYLRHLEDSLYPVMTEDQFAVKLFPMYRYFVTVWLRHQDLEVKLGVIKSLRPMLSLLLPNDDLREQVYDYIPLLLAEFQGGLEALFITQVLRQILEASVTTSTPIPPMLLHPIFTELHVQVCTKAPAQQQFSSQNLMEIVHCFIALARSYPKELMKFFFSQVEMSKEAIRVGTLALIRAVVSADDPKMNIKTIYLAIRVVKNTLSDTRSKVRMAILRIIGQLVLSGFQEKIKGWGLKYVSVQLTLSTYKLTNRRECFYQRDLEEKMVHKVTMDTVKIITSSISGMTNEFWVRLLCYIMETDYTEALTPICISLTNLAENQIHGKDTEAGMAGKSKHVDLPAPQKLLARLLVLMSSPYKGEGRGIAMLNLLRTLSQSIAPSMADMWEQEIPLLVQYLEEHTEFTWNQKVWEDKLIQFLRNSLKKTRGTSWSLRLSKELNNQIETFDSPSLEKGFLYRALGFTLGMGLEADRVEVLLLELLYKTDYSNDFDREGVILCFGLCARGQVKTVLNVLHDFEERIQESEQSWQIGAWRKDHPWRRETVKCALMVMYSCVSSYCHPQMLLTHVDNPITAKIVHHYSSSCQDISLKMAFMKSVVEVTNAIKSIKDLEEFQFTHKSALTSLIVAIIKAEPPDHLASPVRSMAMDALSKLSTLKPFYSSEESIELMDISIHTVISLQPPGEDNDSIKTLYANALNSLKQLMEGLLQRQLDPKGLQETVHLLEKWILSEKEWEREKAMSLHLHLMQIYVQSIGVCIPLKLGQFGILVGLIAPCTCDVHRRTRLASTNVLSSLLDLHVSQTCSLWGASKEQELERCKEDLQETDMDKISSASSRIAKVVCPEFNCDEVVSLIQKLCENIGAMDLQHDRAAVTWIGIFLQMRVKELEDKVAEILGAILVHLPVVDHPEVRRHLIEGILLLAHYHQETVLTSLLRQPLPMESHLTEVWLAVAENVPFARTMLHGLLGRLQSRFTARINATSKADIWRLAAVDPLMTLCTIRLLMEKMDQDDKFPDLFPDLLYTFLLQLGSSHGPEAASPVLKTWRLVHTGPLPQEMTLQRITIKSMQLLVKRINREPLEQALEEQSVWSLLENGGTFLEGLSLMARLCLQNAESYTQRLAELVLTGMGSEVLSCCISSTAICVEFMSDPVLHQEKLLRPVVLMLEKGAGQDKDEILQVLSLRALGNMALGAPRKVKQYRKLLLEKCLGSLQGQVSCSVMAEGMEALTKILAELREGDIGSSFEPISQQCRAFFDNESELIRLKAFILFGKLAKVVGISKKHFFKGEVKRGWVSLMLHCQDPCPSVAQACLATMFQCVHFWGWKSLESSFGHSNDSINDQMTVFQTNMCSVLAQKKPIVLCGFLVETTIFMKSNLSSIRISACALAGIIMKQLSAHFLKKMDLVGLRNSLQDLQLDSDAGVRRAALETLKVLDSCNQHWLLASPRGLP", "length": 1671, "header": "tr|A0A9J7J6N1-1|A0A9J7J6N1_CRIGR Isoform 1 of Maestro heat-like repeat-containing protein family member 2A isoform X2 OS=Cricetulus griseus OX=10029 GN=Mroh2a PE=4 SV=1 CANONICAL=A0A9J7J6N1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7J6N1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6N1/entry#A0A9J7J6N1-1", "sequence": { "sequence": "MEKAATKLNEDMEETEHHGPLEPEDDGTFFQVTNLLNIMDSESTKTDTTGPGLDMRKTLASVIITEKATTDPCVVMNALIRCLQMPETSTQRKMIIYNILQEIIQQEGELEEHCVQRLVAIASKEMRDTTEMEGFETAEVASETLVALSRNHFSLVMYELQHHLKPLNLTDEFVIVTLAKLANGNVFEFMPYMGITLATIFTMLRLANEAKMRQVICSAMETFCETVQFYLRHLEDSLYPVMTEDQFAVKLFPMYRYFVTVWLRHQDLEVKLGVIKSLRPMLSLLLPNDDLREQVYDYIPLLLAEFQGGLEALFITQVLRQILEASVTTSTPIPPMLLHPIFTELHVQVCTKAPAQQQFSSQNLMEIVHCFIALARSYPKELMKFFFSQVEMSKEAIRVGTLALIRAVVSADDPKMNIKTIYLAIRVVKNTLSDTRSKVRMAILRIIGQLVLSGFQEKIKGWGLKYVSVQLTLSTYKLTNRRECFYQRDLEEKMVHKVTMDTVKIITSSISGMTNEFWVRLLCYIMETDYTEALTPICISLTNLAENQIHGKDTEAGMAGKSKHVDLPAPQKLLARLLVLMSSPYKGEGRGIAMLNLLRTLSQSIAPSMADMWEQEIPLLVQYLEEHTEFTWNQKVWEDKLIQFLRNSLKKTRGTSWSLRLSKELNNQIETFDSPSLEKGFLYRALGFTLGMGLEADRVEVLLLELLYKTDYSNDFDREGVILCFGLCARGQVKTVLNVLHDFEERIQESEQSWQIGAWRKDHPWRRETVKCALMVMYSCVSSYCHPQMLLTHVDNPITAKIVHHYSSSCQDISLKMAFMKSVVEVTNAIKSIKDLEEFQFTHKSALTSLIVAIIKAEPPDHLASPVRSMAMDALSKLSTLKPFYSSEESIELMDISIHTVISLQPPGEDNDSIKTLYANALNSLKQLMEGLLQRQLDPKGLQETVHLLEKWILSEKEWEREKAMSLHLHLMQIYVQSIGVCIPLKLGQFGILVGLIAPCTCDVHRRTRLASTNVLSSLLDLHVSQTCSLWGASKEQELERCKEDLQETDMDKISSASSRIAKVVCPEFNCDEVVSLIQKLCENIGAMDLQHDRAAVTWIGIFLQMRVKELEDKVAEILGAILVHLPVVDHPEVRRHLIEGILLLAHYHQETVLTSLLRQPLPMESHLTEVWLAVAENVPFARTMLHGLLGRLQSRFTARINATSKADIWRLAAVDPLMTLCTIRLLMEKMDQDDKFPDLFPDLLYTFLLQLGSSHGPEAASPVLKTWRLVHTGPLPQEMTLQRITIKSMQLLVKRINREPLEQALEEQSVWSLLENGGTFLEGLSLMARLCLQNAESYTQRLAELVLTGMGSEVLSCCISSTAICVEFMSDPVLHQEKLLRPVVLMLEKGAGQDKDEILQVLSLRALGNMALGAPRKVKQYRKLLLEKCLGSLQGQVSCSVMAEGMEALTKILAELREGDIGSSFEPISQQCRAFFDNESELIRLKAFILFGKLAKVVGISKKHFFKGEVKRGWVSLMLHCQDPCPSVAQACLATMFQCVHFWGWKSLESSFGHSNDSINDQMTVFQTNMCSVLAQKKPIVLCGFLVETTIFMKSNLSSIRISACALAGIIMKQLSAHFLKKMDLVGLRNSLQDLQLDSDAGVRRAALETLKVLDSCNQHWLLASPRGLP", "length": 1671, "header": "tr|A0A9J7J6N1-1|A0A9J7J6N1_CRIGR Isoform 1 of Maestro heat-like repeat-containing protein family member 2A isoform X2 OS=Cricetulus griseus OX=10029 GN=Mroh2a PE=4 SV=1 CANONICAL=A0A9J7J6N1-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 260, "start_aa": "Thr", "end_pos": 260, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr260", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J6N1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6N1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J6N1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6N1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100756011", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100756011", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0ABK0L6C5-1", "protein_name": "Maestro heat-like repeat family member 2A", "gene_name": "Mroh2a", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDEAAELNEDVLEEAEHLAHLEPEDDGTFFQVTNLLNIMDSESAKTDTTGPCPDMRKTLASVIITEKATTDPCVVMNALIRCLQVPEISTQRKMNIYNIMQEIIQQEGEMEERCIQRLVAIASKQMRAITETEGFETAEVASETLVALSRNHFSLVMYELQHHLKPLNLTDEFVIVTLAKLANGNVFEFMPYMGITLATIFTMLRLANEAKMRQVICSAMETFCETVQFYLRHLEDSLYPVMTEDQFAVKLFPMYRYFVTVWLRHQDLEVKLGVIKSLRPMLSLLLPNDDLREQVYDYIPLLLAEFQGGLEALFITQVLRQILEASVTTNTPIPPMLLHPIFTELHVQVCSKAPAQQQFSSQNLMEIVHCFIALARSYPKELMKFFFSQVEMSKEALRVGTLALIRAVVSADDPKMNIKTIYLAIRVVKNTLSDTRSKVRMAILRIIGQLVLSGFQEKIKGWGLKYVSVQLTLSTYKLTNRRECFYQRDLEEKMVHKVTMDTVKIITSSISGMTNEFWVRLLCYIMETDYTEALTPICISLTNLAENQIHGKDTEAGIAGKSKHVDLPAPQKLLARLLVLMSSPYKGEGRGIAMLNLLRTLSQSIAPSMADMWEQEIPMLVQYLEEHTEFTWNQKAWEDMLIQFLRNSLKKTRGTSWSLRLSKELNNQIETFDSPSLEKGFLYRALGFTLGMGLEADRVEVLLLELLYKTDYSNDFDREGVILCFGLCARGQVKTVLNVLHDFEERIQESEQSWQIGAWRKDHPWRRETVKSALMVMYSCVSSYCHPQMLLTHVDSPITAKIIHHYSSSCQDISLKMAFMKSVVQVTNAIKSIQDPEDFQFAHKSALTGLIVAIIKAETPDHLVSPVRSMAMDALSQLSMLKPFYSPEESTELMDISIHTVISLQPPGEDNESVKILYANAMSSLKQLMEGLLQRQLDPKGLQDTVHLLEKWILSEKEWEREKAMALHLHLMQIYVQSIGVCIPLKLGQFGILVGLIAPCTCDVHRRTRLTSINVLASLLDLHVSQTCSLWGASKEQELQKCKEDLQDTDMDKISSASSRIAKVVCPEFNCDEVVSLIQKLCENIGAMDLQHDRAAVTWIGIFLQMRVKELEDKVAEILGAILVHLPVVDHQEVRRHLIEGILLLAHYHQETVLTSLLRQPLPMESHLTEVWLAVAENVPFARTMLHGLLGRLQSRFTAKINATSKADIWRLAAVDPLMTLCTIQLLMEKMDQDDKFPDLFPDLLYTFLLQLGSSHGPEAASPVLKTWRLVHTGPLPQEMTLQRITIKSMQLLVKRINREPLEQALEEQSVWSLLENGGTFLEGVSQMARLCMQNMENYMQRLAELVLTGMGSEVLSCCISSTAICVEFMSDPVLHQEKLLRPVVLMLEKGAGQDKDETLQVLSLRALGNMALGAPRKVKQYRKLLLEKCLGSLQGQVSSSATAEGMEALTKVLAELREGDIGSSFEAISKQCRAFFDNESELLRLKAFVLFGRLAKVVGISKKHFFKGEVKRGWVSLLLHCQDPCPSVAQACVATMFQCVHFWGWKSLDSSFGHSNDSINDQMTVFQTNMCSVLAQKKPAVLCSFLLETTVFMKNNLSRIRTAACSLAGIIMKQLSAHYLKKMDLVGLRNSLQDLQLDSDAGVRRAALETLKVLDSCNQHWLLASPRGLPELSIARKKPQQNWPNLHHLSLQPLIDLLAV", "length": 1701 }, "evidence": [ { "id": "A0A9J7J6N1", "url": "https://omabrowser.org/oma/group/A0A9J7J6N1/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "A6NES4-1", "protein_name": "Maestro heat-like repeat-containing protein family member 2A", "gene_name": "MROH2A", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MTEAITEAAVASSEEVSEERDDLGPLELHDSGTFQQVVNLLDIIDSESAKTDTTGAGLDMRKTLASVIIMEKATTEPSVVINTLIRCLQVPEISTQRKVNIYNILQDIIQQEGELEEQCVQRLVAIASKEMREIPEMEGYMKAEVASDTLVALSRNHFSLVMYELQHHLKPLNLTDEFVIITLAKLANGNVFEFMPYMGITLATIFTMLRLANEAKIRQAICSAMETFCETVQFYLKHLEESVYPVMTEEEFALKVFPMYRYFVTVWLRHYNPEVKLGVIKSLKPMLGLLLPNDDLREQVYDYIPLLLAEYQGSLEVLFVTQVLRQILELSVTTNTPVPQMQLHTIFTELHVQVCNKAPAQHQYSSQNLMEMVHCFVALARSYPKELMKFFFSQMETNKEAVRVGTLNLIRAIVSADEPRMSIRAIYLAIRVVKNTISDTRSKVRMAILHIIGQLALCGYQERIKGWGLKYLSVQLTLSTYKLTNRREKFYQRDLEERMVHKVTMDTVKIITSSVSGMTTEFWVRLLCYIMETDYVEALTPICISLTNLAEHQLHGQDVDVSVAGKSRQVDLPAPQKLLARLLVLMSSPYKGEGRGIAMLNLLRTLSQSIAPSMADMWELEIALLVRYLEEHTEFTWDQKAWEDKLIQFLRNSLKKTRGSSWSLRLSKELNNQIASFDSPSLEKGFLYRALGFTLATGLEASKVEVLLLELLYKTDYSNDFDSEGVIMCFGLCARGQVKTVLNVLHDFEERIQESEQSWQISAWRKDHPWRRETVKSALMVMYSCVASYCHPQLLLNLVDSPITAKIIHHYVSSCQDICLKMAFMKSVVQVTKAINNIKDLEDFHFAQKTTLTSIIVAVIKAEPTDNLVSPVRALAMEALSHLSKLKPFYSTEENSELMDISIHSVISLQLPGEDNESIKTLYANALSSLEQLMESLLQRQLDPKGLQEMVQLLEKWILSEKEWEREKAVSLHLYLMWIYVHSTAVCIHLKLGQFGTMVGLIAPCTCDAHQRTRMASMNVLSSLLDLHASQTCSLWGPSKQKELEKCKGDLQSTDVEKIFCASSRIAKVVCMEFSCDEVVSLIQKLCENTGAMNLQHDKASVTWIAFFLQMRAKELEDKVAEILSAILVHLPVVDHPEVRRLLIDGILLLAHHHQETILTSLLRQPLPMESHLAEVWLAVSENVPFARTMLHSLMGRLQSRLSPRISATSKADIWRLAAVDPLMTLCTIHLLIQKLDENDKLPDFLPDLIYTLLLQLGSSHRPEAAPPVLKMWKLVHTTPLPEEMNLQRVTIKSMQLLFKRVKSQHLAHTLDEQAVWDLLQDGGTFLEGVSLLARLCMQHVEGHRQRLAELVLRGMDSEVLSCRISSTAVCFMSGPVLYQEKLLKPAALLLEKGADQEEDEALRVLSLRALGNMALGAPKKVKQYRKVLLEKCLGPLREPVSNSVTAEGMEALTKILAELREGDVGSSFDAMSEQCRIFFDNESELLRLKAFILFGKLARVVGMSKKHFFKGEVKKAWIPLMLHSQDPCSNAAQACMATMFQCVHFWGWKSLEHPSGPSDTATDDKMTVFQTTMCSILTRKKPAVLYRFLLETMAYVKNNLSRIRIAACNLAGIIMKQMSTHYLKKLDFPALRNSLQELQLDPDPGVRRAALETLTVLDSCSQHGFLASPQGMS", "length": 1674 }, "evidence": [ { "id": "A0A9J7J6N1", "url": "https://omabrowser.org/oma/group/A0A9J7J6N1/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "D3Z750-1", "protein_name": "Maestro heat-like repeat-containing protein family member 2A", "gene_name": "Mroh2a", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKEATELNEDMLEEAEHLALLEPEDDGTFFQVTNLLNIMDSESAKTDTTGPGLDMRKTLASVIITEKATTDPCVVMNALIRCLQMPEISTQRKMNIYNIMQEIIQQEGEMEEHCIQRLVAIASKQMRDITEAEDFETAEVASETLVALSRNHFSLVMYELQHHLKPLNLTDEFVIVTLAKLANGNVFEFMPYMGITLATIFTMLRLANEAKMRQVICSAMETFCETVQFYLRHLEDSLYPVMTEDQFAVKLFPMYRYFVTVWLRHQDLEVKLGVIKSLRPMLSLLLPNDDLREQVYDYIPLLLAEFQGTGHWPLFPSLLQVLRQILEASVTTNTPIPPMLLHPIFTELHVQVCSKAPAQQQFSSQNLMEIVHCFIALARSYPKELMKFFFSQVEMSKEAVRVGTLALIRAVVSADDPKINIKTIYLAIRVVKNTLSDTRSKVRMAILRIIGQLVLSGFQEKIKGWGLKYVSVQLTLSTYKLTNRRECFYQRDLEEKMVHKVTMDTVKIITSSISGMTNEFWVRLLCYIMETDYTEALTPICISLTNLAENQIHGKDTEAGIAGKSKHVDLPAPQKLLARLLVLMSSPYKGEGRGIAMLNLLRTLSQSIAPSMADMWEQEIPLLVQYLEEHTEFTWNQKTWEDMLIQFLRNSLKKTRGTSWSLRLSKELNNQIETFDSPSLEKGFLYRALGFTLGMGLEADRVEVLLLELLYKTDYSNDFDREGVILCFGLCARGQVKTVLNVLQDFEERIQESEQSWQIGAWRKDHPWRRETVKSALMVMYSCVSSYCHPQMLLTHVDSPITSKIIHHYSSSCQDISLKMAFMKSVVQVTNAIKSIQDPEDFQFAHKSALTGLIVVIIKAEPPDHLVSPVRSMAMDALSQLSTMKPFYSPEESTELMDISIHTVISLQPPGEDNESVKTLYANTMSSLKQLMEGLLQRQLDPKGLQDTVHLLEKWILSEKEWEREKAMALHLHLMQIYVQSIGVCIPLKLGQFGVLVGLIAPCTCDAHRRTRLASINVLSSLLDLHVSQTCSLWGTSKEQELQKCKEDLQDTDMNKISSASSRVAKVVCPEFNCDEVVSLIQKLCENIGAMDLQHDRAAVTWIGIFLQMRVKELEDKVAEILGAILVHLPVVDHPEVRRHLIEGILLLAHYHQETVLTSLLRQPLPMESHLTEVWLAVAENVPFARTMLHGLLGRLQSRFTAKINATSKADIWRLAAVDPLMTLCTIQLLMEKMDQDDKFPDLFPDLLYTFLLQLGSSHGPEAASPVLKTWRLVHTGPLPQEMTLQRCSRSRITIKSMQLLVKRINREPLEQALEEQSVWSLLENGGTFLEGVSLMARLCMQNMENYMQRLAELVLTGMGSEILSCCISSTAICVEFMSDPVLHQEKLLRPVVLMLEKGAGQDKDETLQVLSLRALGNMALGAPRKVKQYRKLLLEKCLGSLQGQVSSSAMAEGMEALTKVLAELREGDIGSSFEAISKQCRAFFDNESELLRLKAFVLFGKLTKVVGISKKHFFKGEVKRGWVSLLLHCQDPCPSVAQACVATMFQCVHFWGWKSLESSFGHSNDSINEQMTVFQTNMCSVLAQKKPAVLCGFLLETTVFMKNNLSRIRIAACNLAGIIMKQLSAHYLKKMDLVGLRNSLQDLQLDSDAGVRRAALETLKVLDSCNQHWLLASPRGLP", "length": 1679 }, "evidence": [ { "id": "A0A9J7J6N1", "url": "https://omabrowser.org/oma/group/A0A9J7J6N1/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J6N1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6N1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1202, "end_pos": 1204, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1479, "end_pos": 1481, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1557, "end_pos": 1559, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1597, "end_pos": 1599, "annotation": "n_glycosylation_sequon" }, { "start_pos": 168, "end_pos": 170, "annotation": "n_glycosylation_sequon" }, { "start_pos": 911, "end_pos": 913, 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027244475", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244475" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J6Q6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6Q6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113832470", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6Q6", "locus": {} } ], "crossref": [ { "id": "113832470", "url": "https://www.ncbi.nlm.nih.gov/gene/113832470", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000276", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000276", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000725", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000725", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113832470", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113832470", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7J6Q6", "url": "https://www.orthodb.org/?gene=A0A9J7J6Q6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR26453", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR26453", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13853", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13853", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027244475", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244475", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7J6Q6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6Q6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J6Q6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6Q6-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MALSPCLHSGVPSSDLRNTGVWLCSETKIRAWASSLAQFIPQGGFLLVIDRGKTGPHRVAMIDLKLCVDQGGLCLTSARPAPSPLALNFFVYPSEPSWSFXPQANHSSAERFLLLGFTDWPSLQPVLFALVLFCYLLTLTGNAALVLLAIRDPRLHTPMYYFLCHLALVDVGFTTSVVPPLLASLCGPVLQLPRGGCIAQLCASLALGSAECVLLAVMALDRAAAVCRPLHYASLASPRLCRALASASWLGGLANSAAQTALLAARPLCAARRLDHFICELPALLQLACRGGRSATERQMFAARVVILLVPSAVILVSYTAVGRAVWGMRSRAGRRKAASTCGSHLTAVCLFYGSATYTYLQPTYSYNQGRGKFVSLFYTVVTPALNPLIYTLRNKEVKGAALRFLRSLGRRQVGQ", "length": 416, "header": "tr|A0A9J7J6Q6-1|A0A9J7J6Q6_CRIGR Isoform 1 of LOW QUALITY PROTEIN: putative olfactory receptor 2I1 OS=Cricetulus griseus OX=10029 GN=LOC113832470 PE=3 SV=1 CANONICAL=A0A9J7J6Q6-1" }, "isoforms": [ { "isoform_ac": "A0A9J7J6Q6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6Q6/entry#A0A9J7J6Q6-1", "sequence": { "sequence": "MALSPCLHSGVPSSDLRNTGVWLCSETKIRAWASSLAQFIPQGGFLLVIDRGKTGPHRVAMIDLKLCVDQGGLCLTSARPAPSPLALNFFVYPSEPSWSFXPQANHSSAERFLLLGFTDWPSLQPVLFALVLFCYLLTLTGNAALVLLAIRDPRLHTPMYYFLCHLALVDVGFTTSVVPPLLASLCGPVLQLPRGGCIAQLCASLALGSAECVLLAVMALDRAAAVCRPLHYASLASPRLCRALASASWLGGLANSAAQTALLAARPLCAARRLDHFICELPALLQLACRGGRSATERQMFAARVVILLVPSAVILVSYTAVGRAVWGMRSRAGRRKAASTCGSHLTAVCLFYGSATYTYLQPTYSYNQGRGKFVSLFYTVVTPALNPLIYTLRNKEVKGAALRFLRSLGRRQVGQ", "length": 416, "header": "tr|A0A9J7J6Q6-1|A0A9J7J6Q6_CRIGR Isoform 1 of LOW QUALITY PROTEIN: putative olfactory receptor 2I1 OS=Cricetulus griseus OX=10029 GN=LOC113832470 PE=3 SV=1 CANONICAL=A0A9J7J6Q6-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 383, "start_aa": "Thr", "end_pos": 383, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr383", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"UniProtKB", "id": "A0A9J7J6Q6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6Q6" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J6Q6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6Q6" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 105, "end_pos": 107, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7J6Q6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6Q6" }, { "id": "PS50262", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50262" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": 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This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027244458", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244458" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J6V0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6V0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Mucl3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6V0", "locus": {} } ], "crossref": [ { "id": "A0A9J7J6V0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7J6V0", "database": "AlphaFoldDB", "categories": [] }, { "id": "100755283", "url": "https://www.ncbi.nlm.nih.gov/gene/100755283", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026623", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026623", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100755283", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100755283", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7J6V0", "url": "https://www.orthodb.org/?gene=A0A9J7J6V0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22094", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22094", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22094:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22094:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_027244458", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244458", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7J6V0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6V0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J6V0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6V0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTSNLTPYKIQGPQPMVSQQPPSSDMAQLTSGLCSSFGFICCLFFLPASWEAGAATFQEPQKTAEPPTSDHPLILTPGLTHRSPSAHADRDPGQQPPGLPKSTTTQKPKKPCSTRRFAKPVHKPIDNSKATDNQNTTVHHEMTPPMEKNASSQRKDRNGRSANDPTKASERSHSTSAPRRRTTCKSTTSKTRVTRNSGTPVRHTDTSTRRRTTSHKSTTPSHDSALSRKTTPSSGNSSEAPRTSYRTPRTPATTGAEDHRTPFATDKPAQMTTEHTKETTSASDKTIGTQVTLADHEGENISTNERTTRSQATATQSEGEPPSASERTTRSQATATQSEREPPSTSERTTRSQATATQSEREPPSASERTTRSQATATQSEGAPPSVSERTTRSQATATQSEREPPSTSERTTRSQATATQSEREPPSASERTTRSQATATQSEGAPPSVSERTTRSQATATQSEREPPSASERTTRSQATATQSEREPPSASERTTRSQATATQSEREPPSASERTTRSQATATQSEREPPSASERTTRSQATATQSEREPPSASERTTRSQATATQSEGAPSSASERTTRSQATATQSEGEPPSVSERTTGAQVTPIEHDTTPADVKTTQVSAKSTEHTEEATPITQEATQVSESPTLFWRKTTPATKTVTAIGNPGKTVAVFTTTRPPVRATEDKSTALSPHFHKTETTHGELLSPVTTRTDLGFITSGAHHPQQNSHSSPGSLHAAGASRESNSFPAWAIVTVTLLAVIVLLICIGLIVLVACTSRTRRVLAQNSEDSDPEDRGGRNSYPVYLMEQQNLKPNQIPSPP", "length": 822, "header": "tr|A0A9J7J6V0-1|A0A9J7J6V0_CRIGR Isoform 1 of Mucin-like protein 3 OS=Cricetulus griseus OX=10029 GN=Mucl3 PE=4 SV=1 CANONICAL=A0A9J7J6V0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7J6V0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6V0/entry#A0A9J7J6V0-1", "sequence": { "sequence": "MTSNLTPYKIQGPQPMVSQQPPSSDMAQLTSGLCSSFGFICCLFFLPASWEAGAATFQEPQKTAEPPTSDHPLILTPGLTHRSPSAHADRDPGQQPPGLPKSTTTQKPKKPCSTRRFAKPVHKPIDNSKATDNQNTTVHHEMTPPMEKNASSQRKDRNGRSANDPTKASERSHSTSAPRRRTTCKSTTSKTRVTRNSGTPVRHTDTSTRRRTTSHKSTTPSHDSALSRKTTPSSGNSSEAPRTSYRTPRTPATTGAEDHRTPFATDKPAQMTTEHTKETTSASDKTIGTQVTLADHEGENISTNERTTRSQATATQSEGEPPSASERTTRSQATATQSEREPPSTSERTTRSQATATQSEREPPSASERTTRSQATATQSEGAPPSVSERTTRSQATATQSEREPPSTSERTTRSQATATQSEREPPSASERTTRSQATATQSEGAPPSVSERTTRSQATATQSEREPPSASERTTRSQATATQSEREPPSASERTTRSQATATQSEREPPSASERTTRSQATATQSEREPPSASERTTRSQATATQSEREPPSASERTTRSQATATQSEGAPSSASERTTRSQATATQSEGEPPSVSERTTGAQVTPIEHDTTPADVKTTQVSAKSTEHTEEATPITQEATQVSESPTLFWRKTTPATKTVTAIGNPGKTVAVFTTTRPPVRATEDKSTALSPHFHKTETTHGELLSPVTTRTDLGFITSGAHHPQQNSHSSPGSLHAAGASRESNSFPAWAIVTVTLLAVIVLLICIGLIVLVACTSRTRRVLAQNSEDSDPEDRGGRNSYPVYLMEQQNLKPNQIPSPP", "length": 822, "header": "tr|A0A9J7J6V0-1|A0A9J7J6V0_CRIGR Isoform 1 of Mucin-like protein 3 OS=Cricetulus griseus OX=10029 GN=Mucl3 PE=4 SV=1 CANONICAL=A0A9J7J6V0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7J6Y2-1", "uniprot_ac": "A0A9J7J6Y2", "uniprot_id": "A0A9J7J6Y2_CRIGR", "mass": { "chemical_mass": 87144.0, "monoisotopic_mass": 87144.0 }, "refseq": { "ac": "XP_027244609", "name": "heat shock 70 kDa protein 1A isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244609" }, "gene_names": [ { "name": "LOC100760218", "type": "recommended", "evidence": [ { "id": "A0A9J7J6Y2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6Y2" } ] }, { "name": "LOC100760218", "type": "synonym", "evidence": [ { "id": "XP_027244609", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244609" } ] } ], "protein_names": [ { "name": "Heat shock 70 kDa protein 1A isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7J6Y2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6Y2/entry#names_and_taxonomy" } ] }, { "name": "heat shock 70 kDa protein 1A isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027244609", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244609" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027244609.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027244609", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244609" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J6Y2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6Y2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100760218", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6Y2", "locus": {} } ], "crossref": [ { "id": "A0A9J7J6Y2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7J6Y2", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd10233", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd10233", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100760218", "url": "https://www.ncbi.nlm.nih.gov/gene/100760218", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR013126", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013126", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018181", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018181", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043129", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043129", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100760218", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760218", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7J6Y2", "url": "https://www.orthodb.org/?gene=A0A9J7J6Y2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR19375", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19375", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00012", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00012", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027244609", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244609", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7J6Y2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6Y2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J6Y2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6Y2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MATVTPSRPAPYPSRPHRRNPASPANPRSVWRVLDRGGPLRTDYSKEAGKLHQTRNCWKIPVPAAASGSRIGPGASGRGPRAPHKGAGRRAGHQTHPELPTGISRSPRSPSRQRRAARAAEPRVPDPQPGAAAFPRASPRRSAALQEPSAEPRRRRASSGGAMAKSTAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNPQNTVFDAKRLIGRKFGDAVVQADMKHWPFQVVNDGDKPKVQVSYKGETRAFYPEEISSMVLTKMKEVAEAYLGHPVTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIAYGLDRSGKGERNVLIFDLGGGTFDVSILTIDDGIFEVKATAGDTHLGGEDFDNRLVSHFVEEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQASLEIDSLFEGIDFYTSITRARFEELCSDLFRGTLEPVEKALRDAKLDKAQIHDLVLVGGSTRIPKVQKLLQDFFNGRDLNKSINPDEAVAYGAAVQAAILMGDKSENVQDLLLLDVAPLSLGLETAGGVMTALIKRNSTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTRDNNLLGRFELSGIPPAPRGVPQIEVTFDIDANGILNVTATDKSTGKANKITITNDKGRLSKEEIERMVQEAERYKAEDEVQRERVAAKNALESYAFNMKSAVEDEGLKGKISEADRKKVLDGCQEVISWLDANTLADKEEFVHKRQELERVCGPIVSGLYQGAGAPGAGGFGAQAPKGGSGSGPTIEEVD", "length": 803, "header": "tr|A0A9J7J6Y2-1|A0A9J7J6Y2_CRIGR Isoform 1 of Heat shock 70 kDa protein 1A isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100760218 PE=3 SV=1 CANONICAL=A0A9J7J6Y2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7J6Y2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J6Y2/entry#A0A9J7J6Y2-1", "sequence": { "sequence": "MATVTPSRPAPYPSRPHRRNPASPANPRSVWRVLDRGGPLRTDYSKEAGKLHQTRNCWKIPVPAAASGSRIGPGASGRGPRAPHKGAGRRAGHQTHPELPTGISRSPRSPSRQRRAARAAEPRVPDPQPGAAAFPRASPRRSAALQEPSAEPRRRRASSGGAMAKSTAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVALNPQNTVFDAKRLIGRKFGDAVVQADMKHWPFQVVNDGDKPKVQVSYKGETRAFYPEEISSMVLTKMKEVAEAYLGHPVTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIAYGLDRSGKGERNVLIFDLGGGTFDVSILTIDDGIFEVKATAGDTHLGGEDFDNRLVSHFVEEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQASLEIDSLFEGIDFYTSITRARFEELCSDLFRGTLEPVEKALRDAKLDKAQIHDLVLVGGSTRIPKVQKLLQDFFNGRDLNKSINPDEAVAYGAAVQAAILMGDKSENVQDLLLLDVAPLSLGLETAGGVMTALIKRNSTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTRDNNLLGRFELSGIPPAPRGVPQIEVTFDIDANGILNVTATDKSTGKANKITITNDKGRLSKEEIERMVQEAERYKAEDEVQRERVAAKNALESYAFNMKSAVEDEGLKGKISEADRKKVLDGCQEVISWLDANTLADKEEFVHKRQELERVCGPIVSGLYQGAGAPGAGGFGAQAPKGGSGSGPTIEEVD", "length": 803, "header": "tr|A0A9J7J6Y2-1|A0A9J7J6Y2_CRIGR Isoform 1 of Heat shock 70 kDa protein 1A isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100760218 PE=3 SV=1 CANONICAL=A0A9J7J6Y2-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 798, "start_aa": "Thr", "end_pos": 798, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr798", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613648.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_007610058.1. 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"https://www.ebi.ac.uk/QuickGO/term/GO:0019904", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J773", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J773" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of transport", "id": "GO:0051049", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051049", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J773", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J773" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 345, "end_pos": 347, "annotation": "n_glycosylation_sequon" }, { "start_pos": 88, "end_pos": 90, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7J773", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J773" }, { "id": "PS50870", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50870" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "AH", "eco_id": "ECO_0000259", "start_pos": 120, "end_pos": 323, "start_aa": "Ala", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 345, "end_pos": 347 }, { "start_pos": 88, "end_pos": 90 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", 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}, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7J7A3-1", "uniprot_ac": "A0A9J7J7A3", "uniprot_id": "A0A9J7J7A3_CRIGR", "mass": { "chemical_mass": 27922.0, "monoisotopic_mass": 27922.0 }, "refseq": { "ac": "XP_027242833", "name": "WD repeat-containing protein 1-like", "summary": "", "url": 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NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276807.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027242833", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027242833" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J7A3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7A3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113832273", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7A3", "locus": {} } ], "crossref": [ { "id": "A0A9J7J7A3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7J7A3", "database": "AlphaFoldDB", "categories": [] }, { "id": "113832273", "url": "https://www.ncbi.nlm.nih.gov/gene/113832273", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001680", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001680", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015943", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015943", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036322", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036322", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113832273", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113832273", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7J7A3", "url": "https://www.orthodb.org/?gene=A0A9J7J7A3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR19856", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19856", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19856:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19856:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00400", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00400", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027242833", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027242833", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7J7A3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7A3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J7A3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7A3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIGAIFLWEGGSSVGEITAHNKVINCVDIKQSRPYRPATGSDDNCSILRGGPPFKFKLIGVVLLKDQKKCFSIDNPGYEPEVVAVHPGGDTVAVGSSDGKVRVYSILGSTLKNEGKLLEAKGPVTDLAYSHDGAFLAVCDASKVVTVFSVADDYSENNVFYGHHAKIVCLAWSPDNEHFASGGMDMMVYVWTLSDPETKVKIQGLEPSSYGRVALLWVRSQHTTKSSTVWTSSRAGPTDQPLGVMITAAFFEGALLSNSS", "length": 260, "header": "tr|A0A9J7J7A3-1|A0A9J7J7A3_CRIGR Isoform 1 of WD repeat-containing protein 1-like OS=Cricetulus griseus OX=10029 GN=LOC113832273 PE=3 SV=1 CANONICAL=A0A9J7J7A3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7J7A3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7A3/entry#A0A9J7J7A3-1", "sequence": { "sequence": "MIGAIFLWEGGSSVGEITAHNKVINCVDIKQSRPYRPATGSDDNCSILRGGPPFKFKLIGVVLLKDQKKCFSIDNPGYEPEVVAVHPGGDTVAVGSSDGKVRVYSILGSTLKNEGKLLEAKGPVTDLAYSHDGAFLAVCDASKVVTVFSVADDYSENNVFYGHHAKIVCLAWSPDNEHFASGGMDMMVYVWTLSDPETKVKIQGLEPSSYGRVALLWVRSQHTTKSSTVWTSSRAGPTDQPLGVMITAAFFEGALLSNSS", "length": 260, "header": "tr|A0A9J7J7A3-1|A0A9J7J7A3_CRIGR Isoform 1 of WD repeat-containing protein 1-like OS=Cricetulus griseus OX=10029 GN=LOC113832273 PE=3 SV=1 CANONICAL=A0A9J7J7A3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J7A3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7A3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007644037", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007644037" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J7I7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7I7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ccdc117", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7I7", "locus": {} } ], "crossref": [ { "id": "A0A9J7J7I7", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7J7I7", "database": "AlphaFoldDB", "categories": [] }, { "id": "100751075", "url": "https://www.ncbi.nlm.nih.gov/gene/100751075", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR031630", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031630", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100751075", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751075", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7J7I7", "url": "https://www.orthodb.org/?gene=A0A9J7J7I7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR36128", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36128", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR36128:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36128:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15810", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15810", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007644037", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007644037", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7J7I7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7I7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J7I7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7I7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPHDSGPIYTTNPDVSLGGPEWRVLEGVTWGSKRAWRRVLVGCGGGRHYGTWEYTSNWGGGRSLVSKAMAALGRPFSGLPLRGSADFLQPSPGFAGRAFPPGATGPDLAPRPGSRVAPSSPSGRTARGRVPIHCRKKHKRLAEDDECPIRKKRLTEAELCVVANEWVLDTHQGIEGHGVNTCPSGLSVPSMLDAICEEMDQTTAEPQCELARRRLQEIEDRIIDEDEEVESDRNVSHLPSLVLSDTMKTGLKREFDEVFTKKMIESMSRPSMELVLWKPLPEILSEKPKPSSNPKNYLGESQMKRTAAGTAFPQRTEVLLEPRHTDTPLYHSLETAASTEEEMEL", "length": 345, "header": "tr|A0A9J7J7I7-1|A0A9J7J7I7_CRIGR Isoform 1 of Coiled-coil domain-containing protein 117 isoform X2 OS=Cricetulus griseus OX=10029 GN=Ccdc117 PE=4 SV=1 CANONICAL=A0A9J7J7I7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7J7I7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7I7/entry#A0A9J7J7I7-1", "sequence": { "sequence": "MPHDSGPIYTTNPDVSLGGPEWRVLEGVTWGSKRAWRRVLVGCGGGRHYGTWEYTSNWGGGRSLVSKAMAALGRPFSGLPLRGSADFLQPSPGFAGRAFPPGATGPDLAPRPGSRVAPSSPSGRTARGRVPIHCRKKHKRLAEDDECPIRKKRLTEAELCVVANEWVLDTHQGIEGHGVNTCPSGLSVPSMLDAICEEMDQTTAEPQCELARRRLQEIEDRIIDEDEEVESDRNVSHLPSLVLSDTMKTGLKREFDEVFTKKMIESMSRPSMELVLWKPLPEILSEKPKPSSNPKNYLGESQMKRTAAGTAFPQRTEVLLEPRHTDTPLYHSLETAASTEEEMEL", "length": 345, "header": "tr|A0A9J7J7I7-1|A0A9J7J7I7_CRIGR Isoform 1 of Coiled-coil domain-containing protein 117 isoform X2 OS=Cricetulus griseus OX=10029 GN=Ccdc117 PE=4 SV=1 CANONICAL=A0A9J7J7I7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J7I7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7I7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100751075", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751075", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 234, "end_pos": 236, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": 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"count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7J7K5-1", "uniprot_ac": "A0A9J7J7K5", "uniprot_id": "A0A9J7J7K5_CRIGR", "mass": { "chemical_mass": 57906.0, "monoisotopic_mass": 57906.0 }, "refseq": { "ac": "XP_027248666", "name": "tigger transposable element-derived protein 4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248666" }, "gene_names": [ { "name": "Tigd4", "type": "recommended", "evidence": [ { "id": "A0A9J7J7K5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7K5" } ] }, { "name": "Tigd4", "type": "synonym", "evidence": [ { "id": "XP_027248666", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248666" } ] } ], "protein_names": [ { "name": "Tigger transposable element-derived protein 4", "type": "synonym", "evidence": [ { "id": "A0A9J7J7K5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7K5/entry#names_and_taxonomy" } ] }, { "name": "tigger transposable element-derived protein 4", "type": "synonym", "evidence": [ { "id": "XP_027248666", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248666" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027248666", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248666" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J7K5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7K5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tigd4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7K5", "locus": {} } ], "crossref": [ { "id": "A0A9J7J7K5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7J7K5", "database": "AlphaFoldDB", "categories": [] }, { "id": "100761472", "url": "https://www.ncbi.nlm.nih.gov/gene/100761472", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR004875", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004875", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006600", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006600", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007889", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007889", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009057", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009057", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050863", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050863", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100761472", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761472", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7J7K5", "url": "https://www.orthodb.org/?gene=A0A9J7J7K5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR19303", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19303", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR19303:SF18", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19303:SF18", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03184", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03184", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03221", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03221", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF04218", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04218", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027248666", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027248666", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7J7K5", "url": 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027253901", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253901" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J7V4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7V4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100771436", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J7V4", "locus": {} } ], "crossref": [ { "id": "cd11304", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11304", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100771436", "url": "https://www.ncbi.nlm.nih.gov/gene/100771436", "database": "GeneID", "categories": [ 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This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027254787.1. 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027244490", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244490" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J8D1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8D1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113832477", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8D1", "locus": {} } ], "crossref": [ { "id": "A0A9J7J8D1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7J8D1", "database": "AlphaFoldDB", "categories": [] }, { "id": "113832477", "url": "https://www.ncbi.nlm.nih.gov/gene/113832477", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:113832477", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113832477", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7J8D1", "url": "https://www.orthodb.org/?gene=A0A9J7J8D1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "XP_027244490", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027244490", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7J8D1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8D1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J8D1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8D1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MWGQGARGWARPRPSDFPERGAPGASPPGVSSPAAPLPVPPPPPQPRGRQPGLEPGPPGEGRKEGAARKVAVSLLCLSQPGGREGGAARTRETRACSPAGSGGPRPAARRAGAMKVRGGGRQGCGGGARRANGPLARAARVSPGSQAQAHCGEHSLRGTRRRDLGLRLFLHKPPLFPEAPGSPGEGRAGEGARRLPKWLLPLLGGVRLGEGRRGRAAQPPPPPPRLALLPGADRCKLRSVGRIPGPARGRGGASAGPRGAPRLAAWPWLASGASVSLAALRCSPGPAGTPAEVLLGGAHGQERPAPPAAAATEELGWRQRPGPGSRSLQAREDSGTGAAGTEPQARGGRSAARAAGGDMAGGRPRAAALCGTLLPGDGRPGHGAGDVTLPADQWERLPRSGRPAPQPWLLHARERAGTRGGGGAAASPVARMSGEAPPLRLYIKRWRGARRRHFALEWSSL", "length": 461, "header": "tr|A0A9J7J8D1-1|A0A9J7J8D1_CRIGR Isoform 1 of Translation initiation factor IF-2-like OS=Cricetulus griseus OX=10029 GN=LOC113832477 PE=4 SV=1 CANONICAL=A0A9J7J8D1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7J8D1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8D1/entry#A0A9J7J8D1-1", "sequence": { "sequence": "MWGQGARGWARPRPSDFPERGAPGASPPGVSSPAAPLPVPPPPPQPRGRQPGLEPGPPGEGRKEGAARKVAVSLLCLSQPGGREGGAARTRETRACSPAGSGGPRPAARRAGAMKVRGGGRQGCGGGARRANGPLARAARVSPGSQAQAHCGEHSLRGTRRRDLGLRLFLHKPPLFPEAPGSPGEGRAGEGARRLPKWLLPLLGGVRLGEGRRGRAAQPPPPPPRLALLPGADRCKLRSVGRIPGPARGRGGASAGPRGAPRLAAWPWLASGASVSLAALRCSPGPAGTPAEVLLGGAHGQERPAPPAAAATEELGWRQRPGPGSRSLQAREDSGTGAAGTEPQARGGRSAARAAGGDMAGGRPRAAALCGTLLPGDGRPGHGAGDVTLPADQWERLPRSGRPAPQPWLLHARERAGTRGGGGAAASPVARMSGEAPPLRLYIKRWRGARRRHFALEWSSL", "length": 461, "header": "tr|A0A9J7J8D1-1|A0A9J7J8D1_CRIGR Isoform 1 of Translation initiation factor IF-2-like OS=Cricetulus griseus OX=10029 GN=LOC113832477 PE=4 SV=1 CANONICAL=A0A9J7J8D1-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 289, "start_aa": "Thr", "end_pos": 289, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr289", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J8D1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8D1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 27% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027249976", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027249976" } ] }, { "annotation": "In the hair cortex, hair keratin intermediate filaments are embedded in an interfilamentous matrix, consisting of hair keratin-associated proteins (KRTAP), which are essential for the formation of a rigid and resistant hair shaft through their extensive disulfide bond cross-linking with abundant cysteine residues of hair keratins. The matrix proteins include the high-sulfur and high-glycine-tyrosine keratins.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J8H5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8H5#function" }, { "database": "UniProtKB", "id": "ARBA00003327", "url": "https://www.uniprot.org/uniprotkb/ARBA00003327#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J8H5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8H5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113833337", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8H5", "locus": {} } ], "crossref": [ { "id": "A0A9J7J8H5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7J8H5", "database": "AlphaFoldDB", "categories": [] }, { "id": "113833337", "url": 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"MAASTMSVCSDACTNSSWQVDDCPESCCEPSCCAPSCCQPSCCQPSCCAPAPCLSFVCTPVSCVSSPCCQSVCCTPSCCQQSSCQPSCCTSSPCCVTLCCKPVCCTPICSGSSSCCQQSSCQPSCCTSSPCCVTLCCKPVCCTPICSGSSSCCQQSSCQPSCCQPSCCVPVCCKPVCCKPCSSVSLLCRPVCRPACCVPTSSCCGSSCQPSCCKPCSSMSLLCRPACSSQACCGLSSGEGRKYNCLEIRVPLFLAQALSFRLAYMRSSVALPPATTSSPLNSQQQLDFWPEERPQQAWLEQAGRQSRDMLEQGLQQLGWQEEAQQEEVGTQQAGLHTGRQSRDMLEQGLQQTGLQQTGTQQDGWQHEEDPEQMGVQQTGLQQRVTQQGEEVQHEGWQLDCWQHEEDPEQMALLQRVPALPACVQTRLLCAHLLLLCLLLPAQLLQALLQHVPALPPCLLLPNLLNPLLSPETQLLSPSHKHTHTPTHHSCWFNPTMANTCCTRTCVIAASTTSVCSSNLSCGSRICSPSNCTGASWQVDNCQESYCEPPCCVPSCCAPTPCLLCTPVGCLSRPCCTSCCSPSCCQQSSCQPSCCTSSPCCVTLCCKPVCCTPICSGSPCCQQSSCQPSCCTSSPCCLTLCCKPVCCTPICSGSSSCCQQSSCQPSCCQPSCCVPVCCKPVCCKPCSSVSLLCRPVCRPACCVPTSSCCASSCQPSCSSMSSMSLLCRPACSSQACCGLSSGQKSSC", "length": 746, "header": "tr|A0A9J7J8H5-1|A0A9J7J8H5_CRIGR Isoform 1 of Uncharacterized protein LOC113833337 OS=Cricetulus griseus OX=10029 GN=LOC113833337 PE=4 SV=1 CANONICAL=A0A9J7J8H5-1" }, "isoforms": [ { "isoform_ac": "A0A9J7J8H5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8H5/entry#A0A9J7J8H5-1", "sequence": { "sequence": "MAASTMSVCSDACTNSSWQVDDCPESCCEPSCCAPSCCQPSCCQPSCCAPAPCLSFVCTPVSCVSSPCCQSVCCTPSCCQQSSCQPSCCTSSPCCVTLCCKPVCCTPICSGSSSCCQQSSCQPSCCTSSPCCVTLCCKPVCCTPICSGSSSCCQQSSCQPSCCQPSCCVPVCCKPVCCKPCSSVSLLCRPVCRPACCVPTSSCCGSSCQPSCCKPCSSMSLLCRPACSSQACCGLSSGEGRKYNCLEIRVPLFLAQALSFRLAYMRSSVALPPATTSSPLNSQQQLDFWPEERPQQAWLEQAGRQSRDMLEQGLQQLGWQEEAQQEEVGTQQAGLHTGRQSRDMLEQGLQQTGLQQTGTQQDGWQHEEDPEQMGVQQTGLQQRVTQQGEEVQHEGWQLDCWQHEEDPEQMALLQRVPALPACVQTRLLCAHLLLLCLLLPAQLLQALLQHVPALPPCLLLPNLLNPLLSPETQLLSPSHKHTHTPTHHSCWFNPTMANTCCTRTCVIAASTTSVCSSNLSCGSRICSPSNCTGASWQVDNCQESYCEPPCCVPSCCAPTPCLLCTPVGCLSRPCCTSCCSPSCCQQSSCQPSCCTSSPCCVTLCCKPVCCTPICSGSPCCQQSSCQPSCCTSSPCCLTLCCKPVCCTPICSGSSSCCQQSSCQPSCCQPSCCVPVCCKPVCCKPCSSVSLLCRPVCRPACCVPTSSCCASSCQPSCSSMSSMSLLCRPACSSQACCGLSSGQKSSC", "length": 746, "header": "tr|A0A9J7J8H5-1|A0A9J7J8H5_CRIGR Isoform 1 of Uncharacterized protein LOC113833337 OS=Cricetulus griseus OX=10029 GN=LOC113833337 PE=4 SV=1 CANONICAL=A0A9J7J8H5-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 559, "start_aa": "Thr", "end_pos": 559, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr559", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"IPR000840", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000840", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002079", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002079", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR003036", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003036", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008919", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008919", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR010999", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010999", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036946", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036946", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040643", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040643", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050462", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050462", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113832822", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113832822", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7J8H8", "url": "https://www.orthodb.org/?gene=A0A9J7J8H8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR33166", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR33166", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF01140", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01140", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01141", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01141", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02093", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02093", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF18697", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18697", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027247100", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027247100", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7J8H8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8H8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J8H8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8H8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPAEGMAKMSECKFLESIQAVQESIFLLLRGIYELPSAKPHNHKPGDIIWVQRHHKEALGPHWKEPNKVILTIPTAMKVVYSCVHLYLAAPRGTDEFGLLTTALGDVLVAFEALAVICVLLSLETMGQTVTTPLSLTLSHWRDVQEYAHNQSVDVRKRKWITLCSSEWPTFDVGWPRDVKDTKAKEKKTPKVLPPGEDLLVDLLTEEPPPYPPLPPPPEAEADSAALAEAAPDPSPMAYRLRGRREQPVPDSTTLPLRTGLNGQPQYWPFSASDLYNWKNNNPSFSADPVRLTSLIESVLTTHQPTWDDCQQLLQVLLTSEEKQRVLLEARKNVPGANGQPTQLPNEIDAACPLERPEWDFTTEAAHLQALQLVQREVWKPLAQAYKDQRDHPTIPHSYQIGDTVWVRRHQAKNLEPRWKGPYIVLLTTPTALKVDGIAAWIHASHVKPARPTDSATASEWTAHRTQNPLKIRLSRTPSC", "length": 480, "header": "tr|A0A9J7J8H8-1|A0A9J7J8H8_CRIGR Isoform 1 of Uncharacterized protein LOC113832822 OS=Cricetulus griseus OX=10029 GN=LOC113832822 PE=4 SV=1 CANONICAL=A0A9J7J8H8-1" }, "isoforms": [ { "isoform_ac": "A0A9J7J8H8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8H8/entry#A0A9J7J8H8-1", "sequence": { "sequence": "MPAEGMAKMSECKFLESIQAVQESIFLLLRGIYELPSAKPHNHKPGDIIWVQRHHKEALGPHWKEPNKVILTIPTAMKVVYSCVHLYLAAPRGTDEFGLLTTALGDVLVAFEALAVICVLLSLETMGQTVTTPLSLTLSHWRDVQEYAHNQSVDVRKRKWITLCSSEWPTFDVGWPRDVKDTKAKEKKTPKVLPPGEDLLVDLLTEEPPPYPPLPPPPEAEADSAALAEAAPDPSPMAYRLRGRREQPVPDSTTLPLRTGLNGQPQYWPFSASDLYNWKNNNPSFSADPVRLTSLIESVLTTHQPTWDDCQQLLQVLLTSEEKQRVLLEARKNVPGANGQPTQLPNEIDAACPLERPEWDFTTEAAHLQALQLVQREVWKPLAQAYKDQRDHPTIPHSYQIGDTVWVRRHQAKNLEPRWKGPYIVLLTTPTALKVDGIAAWIHASHVKPARPTDSATASEWTAHRTQNPLKIRLSRTPSC", "length": 480, "header": "tr|A0A9J7J8H8-1|A0A9J7J8H8_CRIGR Isoform 1 of Uncharacterized protein LOC113832822 OS=Cricetulus griseus OX=10029 GN=LOC113832822 PE=4 SV=1 CANONICAL=A0A9J7J8H8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J8H8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8H8" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J8H8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8H8" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:113832822", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113832822", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "hydrolase activity", "id": "GO:0016787", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016787", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J8H8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8H8" } ], "pmid": "" }, { "name": "endonuclease activity", "id": "GO:0004519", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004519", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J8H8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8H8" } ], "pmid": "" }, { "name": "nucleotidyltransferase activity", "id": "GO:0016779", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016779", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J8H8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8H8" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "virion assembly", "id": "GO:0019068", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0019068", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J8H8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8H8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 150, "end_pos": 152, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7J8H8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8H8" }, { "id": "PF02093", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02093" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Core shell protein Gag P30", "eco_id": "ECO_0000259", "start_pos": 273, "end_pos": 367, "start_aa": "Ser", "end_aa": "His", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7J8H8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8H8" }, { "id": "PF01141", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01141" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Gag polyprotein inner coat protein p12", "eco_id": "ECO_0000259", "start_pos": 184, "end_pos": 254, "start_aa": "Ala", "end_aa": "Thr", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7J8H8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8H8" }, { "id": "PF01140", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01140" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Gamma-retroviral matrix protein", "eco_id": "ECO_0000259", "start_pos": 127, "end_pos": 180, "start_aa": "Gly", "end_aa": "Lys", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7J8H8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8H8" }, { "id": "PF18697", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18697" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Murine leukemia virus integrase C-terminal", "eco_id": "ECO_0000259", "start_pos": 41, "end_pos": 86, "start_aa": "His", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 150, "end_pos": 152 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7J8J9-1", "uniprot_ac": "A0A9J7J8J9", "uniprot_id": "A0A9J7J8J9_CRIGR", "mass": { "chemical_mass": 47873.0, "monoisotopic_mass": 47873.0 }, "refseq": { "ac": "XP_007639589", "name": "LOW QUALITY PROTEIN: IQ domain-containing protein C", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007639589" }, "gene_names": [ { "name": "Iqcc", "type": "recommended", "evidence": [ { "id": "A0A9J7J8J9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8J9" } ] }, { "name": "Iqcc", "type": "synonym", "evidence": [ { "id": "XP_007639589", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007639589" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: IQ domain-containing protein C", "type": "synonym", "evidence": [ { "id": "XP_007639589", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007639589" }, { "id": "A0A9J7J8J9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8J9/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 2 indels ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613801.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 27, 2016 this sequence version replaced XP_007639589.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007639589", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007639589" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J8J9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8J9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Iqcc", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8J9", "locus": {} } ], "crossref": [ { "id": "100760183", "url": "https://www.ncbi.nlm.nih.gov/gene/100760183", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR042506", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042506", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100760183", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760183", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7J8J9", "url": "https://www.orthodb.org/?gene=A0A9J7J8J9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR16049", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16049", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR16049:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR16049:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_007639589", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007639589", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7J8J9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8J9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J8J9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8J9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKDPDLVLRKVSALQAGIRGFLVRRQFQSLRAEYEAVVQEIEGDLSTLQWTRGWIPKPIFLPEAKFHRSWKAEKVPNPEQKLCSHLPLKDSGKDGLVEDMLKEAGGSPAKAGSLCRDDCPWPQPEQGRKARESSLPVGSNAVTDLGLSQSQQELQDQRNHLAMELLWLQQAINSRKEYLILKQTLRSPEASQTRDQPNMCLDHRGQACEKMWLQSSCLPKDQXLRDRILGRPCHADDSCQEGSPQLQKSPDSLACTGKYVAGAKGWELYYRKAATQLAPALESQVGGDRVIKGPDHRGQAVNETSLQQLKHVEGQTPEDPRSRSPCSSKAMTQLPTLCENPNTEDKYSRKPTYKETDCHRARPHDLIISEGHIWDGTSAGLEQGSLALRRTKPPKSQYPSARSSRHGXSNELSQEGWENQRTLLWR", "length": 426, "header": "tr|A0A9J7J8J9-1|A0A9J7J8J9_CRIGR Isoform 1 of LOW QUALITY PROTEIN: IQ domain-containing protein C OS=Cricetulus griseus OX=10029 GN=Iqcc PE=4 SV=1 CANONICAL=A0A9J7J8J9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7J8J9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8J9/entry#A0A9J7J8J9-1", "sequence": { "sequence": "MKDPDLVLRKVSALQAGIRGFLVRRQFQSLRAEYEAVVQEIEGDLSTLQWTRGWIPKPIFLPEAKFHRSWKAEKVPNPEQKLCSHLPLKDSGKDGLVEDMLKEAGGSPAKAGSLCRDDCPWPQPEQGRKARESSLPVGSNAVTDLGLSQSQQELQDQRNHLAMELLWLQQAINSRKEYLILKQTLRSPEASQTRDQPNMCLDHRGQACEKMWLQSSCLPKDQXLRDRILGRPCHADDSCQEGSPQLQKSPDSLACTGKYVAGAKGWELYYRKAATQLAPALESQVGGDRVIKGPDHRGQAVNETSLQQLKHVEGQTPEDPRSRSPCSSKAMTQLPTLCENPNTEDKYSRKPTYKETDCHRARPHDLIISEGHIWDGTSAGLEQGSLALRRTKPPKSQYPSARSSRHGXSNELSQEGWENQRTLLWR", "length": 426, "header": "tr|A0A9J7J8J9-1|A0A9J7J8J9_CRIGR Isoform 1 of LOW QUALITY PROTEIN: IQ domain-containing protein C OS=Cricetulus griseus OX=10029 GN=Iqcc PE=4 SV=1 CANONICAL=A0A9J7J8J9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027247277.1. 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This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027247299", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027247299" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J8N1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8N1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Klrg2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8N1", "locus": {} } ], "crossref": [ { "id": "cd03593", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd03593", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "113832845", "url": "https://www.ncbi.nlm.nih.gov/gene/113832845", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001304", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001304", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016186", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016186", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016187", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016187", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR033992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR033992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043318", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043318", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113832845", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113832845", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7J8N1", "url": "https://www.orthodb.org/?gene=A0A9J7J8N1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR47606", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47606", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR47606:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR47606:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00059", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00059", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027247299", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027247299", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7J8N1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8N1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J8N1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8N1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MERTQEASGGGQAEAWSPEEPLKRPDTEYVEAPPPPPPPPPEAPDGHPRAERTGREAADAEPREPREEKPQPPAPCGTPRLPPLGLGYGAFRHLGSSSREPPSPSPSRDGEAEQPPWAASGEPAPGAWAPVELQVDVRVKPVGAAGASRSPSPAPSTRFLTVPVPESPAFARRSAPRPRXLPRAPSPGSTWGRGSPLAATPTTTPSELIGAAEGSAVPPDSPTCRCRCQGSGLTKEDARLLQSAGMDSKKLPRAVTLIGLPLYMKSLRWALVIMAVFLAVCTVAIVALASRGGARCQPCPRGWLWSQEHCYYLSEEAQDWESSQAFCSAHHATLPLLNHTQDFLRKYQITKDSWVGAQRGPEGWHWTDGVPLPPQLFPEDSEDHPDFSCGSLEEGRLVARDCSSPKPWVCARRVK", "length": 415, "header": "tr|A0A9J7J8N1-1|A0A9J7J8N1_CRIGR Isoform 1 of LOW QUALITY PROTEIN: killer cell lectin-like receptor subfamily G member 2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Klrg2 PE=4 SV=1 CANONICAL=A0A9J7J8N1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7J8N1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8N1/entry#A0A9J7J8N1-1", "sequence": { "sequence": "MERTQEASGGGQAEAWSPEEPLKRPDTEYVEAPPPPPPPPPEAPDGHPRAERTGREAADAEPREPREEKPQPPAPCGTPRLPPLGLGYGAFRHLGSSSREPPSPSPSRDGEAEQPPWAASGEPAPGAWAPVELQVDVRVKPVGAAGASRSPSPAPSTRFLTVPVPESPAFARRSAPRPRXLPRAPSPGSTWGRGSPLAATPTTTPSELIGAAEGSAVPPDSPTCRCRCQGSGLTKEDARLLQSAGMDSKKLPRAVTLIGLPLYMKSLRWALVIMAVFLAVCTVAIVALASRGGARCQPCPRGWLWSQEHCYYLSEEAQDWESSQAFCSAHHATLPLLNHTQDFLRKYQITKDSWVGAQRGPEGWHWTDGVPLPPQLFPEDSEDHPDFSCGSLEEGRLVARDCSSPKPWVCARRVK", "length": 415, "header": "tr|A0A9J7J8N1-1|A0A9J7J8N1_CRIGR Isoform 1 of LOW QUALITY PROTEIN: killer cell lectin-like receptor subfamily G member 2 isoform X3 OS=Cricetulus griseus OX=10029 GN=Klrg2 PE=4 SV=1 CANONICAL=A0A9J7J8N1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027255562", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027255562" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J8T9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8T9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ldlrad2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8T9", "locus": {} } ], "crossref": [ { "id": "A0A9J7J8T9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7J8T9", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00112", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00112", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100768426", "url": "https://www.ncbi.nlm.nih.gov/gene/100768426", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002172", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002172", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035914", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035914", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036055", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036055", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042333", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042333", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100768426", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768426", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7J8T9", "url": "https://www.orthodb.org/?gene=A0A9J7J8T9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24652", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24652", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24652:SF67", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24652:SF67", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_027255562", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027255562", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7J8T9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8T9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J8T9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8T9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MIFLWHLPQRLLLLGTTALTVSALGTADLTDLCGQTWQGDALQLRSHSASRKFYFVTPDTDCMLWLRAAAPEDRIRFQFRFFLVYSLSSATRTTAATLTTAATLNPNASSRDQCAPGSYLQFYDGPQGAPRVLGHPTCGLTIPAPITSSGPWLGLRLVTRGRHPRVDFLGEVTSFRLGSCGTYFRCRNSRCVPQSLLCDDWDMDNCGDGSDQDSQPPASCRSPSVVPKQTPRMEGDSSRPLTLLSALGSAAERTSPASLAPITREVLEGSWIWWGALASSILLISTGLLWWCCCCPGWLVWHPGAHRLCLRCCTASNTCHLCPGRVAPGDLWLTWPAFQNQGGHP", "length": 345, "header": "tr|A0A9J7J8T9-1|A0A9J7J8T9_CRIGR Isoform 1 of Low-density lipoprotein receptor class A domain-containing protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Ldlrad2 PE=4 SV=1 CANONICAL=A0A9J7J8T9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7J8T9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8T9/entry#A0A9J7J8T9-1", "sequence": { "sequence": "MIFLWHLPQRLLLLGTTALTVSALGTADLTDLCGQTWQGDALQLRSHSASRKFYFVTPDTDCMLWLRAAAPEDRIRFQFRFFLVYSLSSATRTTAATLTTAATLNPNASSRDQCAPGSYLQFYDGPQGAPRVLGHPTCGLTIPAPITSSGPWLGLRLVTRGRHPRVDFLGEVTSFRLGSCGTYFRCRNSRCVPQSLLCDDWDMDNCGDGSDQDSQPPASCRSPSVVPKQTPRMEGDSSRPLTLLSALGSAAERTSPASLAPITREVLEGSWIWWGALASSILLISTGLLWWCCCCPGWLVWHPGAHRLCLRCCTASNTCHLCPGRVAPGDLWLTWPAFQNQGGHP", "length": 345, "header": "tr|A0A9J7J8T9-1|A0A9J7J8T9_CRIGR Isoform 1 of Low-density lipoprotein receptor class A domain-containing protein 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Ldlrad2 PE=4 SV=1 CANONICAL=A0A9J7J8T9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J8T9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J8T9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100768426", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100768426", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 107, "end_pos": 109, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": 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Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027250867.1. 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This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027251414", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027251414" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7J9G9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9G9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100772772", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9G9", "locus": {} } ], "crossref": [ { "id": "100772772", "url": "https://www.ncbi.nlm.nih.gov/gene/100772772", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006634", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006634", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050846", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050846", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100772772", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100772772", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "MPVYYSH", "url": "https://omabrowser.org/oma/group/MPVYYSH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7J9G9", "url": "https://www.orthodb.org/?gene=A0A9J7J9G9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13439", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13439", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13439:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13439:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF03798", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03798", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027251414", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027251414", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7J9G9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9G9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7J9G9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9G9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEANTKLVIGIVCSSFVIFQILFHFVSYWFSAKVSPGYNSLSIEKKIEWNSRVVSTCHSLLVGTYGLYLFLFDEPTIADPLWGDPACVKLNIATASGYLVSDLLIILLNWKVIGDKFFVIHHCAALTAYFLMLRDGVLAYIANFRLLAELSSPFVNQRWFFETLKYPKFSKANVINGILMTVVFFVVRIIAIPPLYFFIYSVYGTEAFIRLGFTIQFTWITTCLILDVMNVMWMIKITKGCIKVISLIRQEKAKNSLQNGKLD", "length": 263, "header": "tr|A0A9J7J9G9-1|A0A9J7J9G9_CRIGR Isoform 1 of TLC domain-containing protein 4 OS=Cricetulus griseus OX=10029 GN=LOC100772772 PE=4 SV=1 CANONICAL=A0A9J7J9G9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7J9G9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7J9G9/entry#A0A9J7J9G9-1", "sequence": { "sequence": "MEANTKLVIGIVCSSFVIFQILFHFVSYWFSAKVSPGYNSLSIEKKIEWNSRVVSTCHSLLVGTYGLYLFLFDEPTIADPLWGDPACVKLNIATASGYLVSDLLIILLNWKVIGDKFFVIHHCAALTAYFLMLRDGVLAYIANFRLLAELSSPFVNQRWFFETLKYPKFSKANVINGILMTVVFFVVRIIAIPPLYFFIYSVYGTEAFIRLGFTIQFTWITTCLILDVMNVMWMIKITKGCIKVISLIRQEKAKNSLQNGKLD", "length": 263, "header": "tr|A0A9J7J9G9-1|A0A9J7J9G9_CRIGR Isoform 1 of TLC domain-containing protein 4 OS=Cricetulus griseus OX=10029 GN=LOC100772772 PE=4 SV=1 CANONICAL=A0A9J7J9G9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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:: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027251809.1. 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027249331", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027249331" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JA08", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JA08" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Chia", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JA08", "locus": {} } ], "crossref": [ { "id": "cd02872", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02872", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100750633", "url": "https://www.ncbi.nlm.nih.gov/gene/100750633", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001223", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001223", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011583", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011583", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017853", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017853", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029070", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029070", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050314", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050314", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100750633", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100750633", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JA08", "url": "https://www.orthodb.org/?gene=A0A9J7JA08", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11177", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11177", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11177:SF188", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11177:SF188", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00704", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00704", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027249331", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027249331", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JA08", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JA08", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JA08-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JA08-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVKLILATGLALLLNSQLGSSYQLMRYLAQNRLRLGSFSPADTDPCLCTHLIYAYASMWNNKITRKSMNDFIDYQALNTLKSGNTQLKTLLAIGGWDFGPAPFSNMFSTLHNRQTFINSAIKFLHQYRFDGLNLDWQFPRSHGSPAKDKHLFTILEQEMREAFEQEAFQNNSPRLMITATVAGVILTIQSGYEIPQLSHSLDYIQVMTYNLHGSQDGYTGKNSPLYKSLNDTGTNTFLNVDYIMTYWNENGAAPEKLIFGFPAYGQTFTLSDPSNTGICAPTISAGALGPYTEESGIWAYYEICTFLNDGATEAWDGAQEVPYTYQGNKWVGYDNVKSFHIKAEWLKQNSLGGAMLWTLDMDDFSGAFCNQGQFSLTSTLKNALEVHSKSCMASVSDLQQVXYCGSRNLKRGSEAVGSVSPIPAG", "length": 425, "header": "tr|A0A9J7JA08-1|A0A9J7JA08_CRIGR Isoform 1 of LOW QUALITY PROTEIN: acidic mammalian chitinase isoform X2 OS=Cricetulus griseus OX=10029 GN=Chia PE=4 SV=1 CANONICAL=A0A9J7JA08-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JA08-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JA08/entry#A0A9J7JA08-1", "sequence": { "sequence": "MVKLILATGLALLLNSQLGSSYQLMRYLAQNRLRLGSFSPADTDPCLCTHLIYAYASMWNNKITRKSMNDFIDYQALNTLKSGNTQLKTLLAIGGWDFGPAPFSNMFSTLHNRQTFINSAIKFLHQYRFDGLNLDWQFPRSHGSPAKDKHLFTILEQEMREAFEQEAFQNNSPRLMITATVAGVILTIQSGYEIPQLSHSLDYIQVMTYNLHGSQDGYTGKNSPLYKSLNDTGTNTFLNVDYIMTYWNENGAAPEKLIFGFPAYGQTFTLSDPSNTGICAPTISAGALGPYTEESGIWAYYEICTFLNDGATEAWDGAQEVPYTYQGNKWVGYDNVKSFHIKAEWLKQNSLGGAMLWTLDMDDFSGAFCNQGQFSLTSTLKNALEVHSKSCMASVSDLQQVXYCGSRNLKRGSEAVGSVSPIPAG", "length": 425, "header": "tr|A0A9J7JA08-1|A0A9J7JA08_CRIGR Isoform 1 of LOW QUALITY PROTEIN: acidic mammalian chitinase isoform X2 OS=Cricetulus griseus OX=10029 GN=Chia PE=4 SV=1 CANONICAL=A0A9J7JA08-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JA08", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JA08" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JA08", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JA08" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100750633", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100750633", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JA08", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JA08" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "carbohydrate metabolic process", "id": "GO:0005975", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005975", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JA08", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JA08" } ], "pmid": "" }, { "name": "chitin catabolic process", "id": "GO:0006032", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006032", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JA08", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JA08" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "chitinase activity", "id": "GO:0004568", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004568", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JA08", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JA08" } ], "pmid": "" }, { "name": "chitin binding", "id": "GO:0008061", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008061", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JA08", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JA08" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 170, "end_pos": 172, "annotation": "n_glycosylation_sequon" }, { "start_pos": 230, "end_pos": 232, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JA08", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JA08" }, { "id": "PS51910", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51910" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "GH18", "eco_id": "ECO_0000259", "start_pos": 22, "end_pos": 387, "start_aa": "Tyr", "end_aa": "His", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 170, "end_pos": 172 }, { "start_pos": 230, "end_pos": 232 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7JA68-1", "uniprot_ac": "A0A9J7JA68", "uniprot_id": "A0A9J7JA68_CRIGR", "mass": { "chemical_mass": 108197.0, "monoisotopic_mass": 108197.0 }, "refseq": { "ac": "XP_007652958", "name": "armadillo repeat-containing protein 2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652958" }, "gene_names": [ { "name": "Armc2", "type": "recommended", "evidence": [ { "id": "A0A9J7JA68", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JA68" } ] }, { "name": "Armc2", "type": "synonym", "evidence": [ { "id": "XP_007652958", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652958" } ] } ], "protein_names": [ { "name": "Armadillo repeat-containing protein 2 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7JA68", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JA68/entry#names_and_taxonomy" } ] }, { "name": "armadillo repeat-containing protein 2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007652958", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652958" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613639.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_007652958.2. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007652958", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652958" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JA68", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JA68" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Armc2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JA68", "locus": {} } ], "crossref": [ { "id": "A0A9J7JA68", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JA68", "database": "AlphaFoldDB", "categories": [] }, { "id": "100751417", "url": "https://www.ncbi.nlm.nih.gov/gene/100751417", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000225", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000225", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038905", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038905", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100751417", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100751417", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JA68", "url": "https://www.orthodb.org/?gene=A0A9J7JA68", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JG43", "url": "https://www.orthodb.org/?gene=A0A9J7JG43", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21356", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21356", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21356:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21356:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_007652958", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652958", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JA68", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JA68", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JA68-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JA68-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JG43", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JG43", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JG43-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JG43-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGEWSRPPLPSAPCLSVAAALLMREDKLISAGVCASRARHRCFESSPESPCQDLLQRIPHRSAAPGIYKLTTPTAAEGCVSEDHFNLKGKMLSSNDQKLEKLDHFHRPSVSKQKTSAEIISEARNALRAVRTQRPFTPREDQRKLFGPASSRAPENRPPSSFSLHASSFELSDSRPISGTRLSPLELKPRAPASPTIEEDACLSFPKPPLDPAKIRRISGSRAKFYRAASQGILLSDRSLAAAHSKTMEESKETVTMGNSTAKINGTYLTVSNAIGHLKSHPLQLTYEQGFRETKEQEVFKEPPPSPHLRSRGNEAAQRRHRGASLTPGHDSERMDRDQGKWRTRASSCPSSSDLSRLETRTASRTGLQEQETETEVDGVFWKTRIVPILHELEKEEDIDAMCAACTQLHHVLEEGHMLGKKFRGRSVLLKTLYKLVDAGSDSLSLKLAKLILALKVSRKNLLNVCKLVFKVSRSEKNDVLMQTDNILASLLEVLRGEDLQGNTEAFLYCMGALKFISGSPGFLTEMVSKGAVEILTELIKQVNEDTKKRSTCLPDSGNLLVQTTATLRNLADSPLTRSKLLNIGAFPQLCTVMEQYMDDKDVCTNVARIFSKLTSYRDCCAALASYSRCYALFLSLLNKYQKEQDLVIRIVFILGNLTAKNNQARELFSRERGSIETLLTLFQNYQLDQHSPRLGFPGARPPAEAEDVLVKLTRVLANIAIHPRIGPVLAANPRVVGLLLTTLESNSLGDCEELVINTTAAINNLSFYQVKNSILQHKKLYVAELLLKLLVSNNMDGILEAVRVFGNLSQDHDVCNFLMQKNVHKFMIALLEAKHQDICFSACGVLLNLTVDKDKHAILKEGGGIKKLVDCLREFGPGDWQLACLVCKTLWNFSENITNSSCFGDEDTNTLLVLLSSFLDEELALGGSFDQDLKSYHRLHWETEFKPVAQQLLKRIQSHHTPLESLPIPSLV", "length": 973, "header": "tr|A0A9J7JA68-1|A0A9J7JA68_CRIGR Isoform 1 of Armadillo repeat-containing protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Armc2 PE=4 SV=1 CANONICAL=A0A9J7JA68-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JA68-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JA68/entry#A0A9J7JA68-1", "sequence": { "sequence": 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"tr|A0A9J7JAC4-1|A0A9J7JAC4_CRIGR Isoform 1 of Basic leucine zipper and W2 domain-containing protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Bzw1 PE=3 SV=1 CANONICAL=A0A9J7JAC4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JAC4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JAC4/entry#A0A9J7JAC4-1", "sequence": { "sequence": "MNNQKQQKPTLSGQRFKTRKRDEKERFDPTQFQDCIVQGLTETGADLEAVAKFLDASGAKLDYRRYAETLFDILVAGGMLAPGGTLADDVMRTRVCVFAAQEDLETMQAFAQVFNKLIRRYKYLEKGFEDEVKKLLLFLKGFSESERNKLAMLTGVLLANGTLNASILNSLYNENLVKEGVSAAFAVKLFKSWINEKDINAVAASLRKVSMDNRLMELFPANKQSVEHFTKYFTEAGLKELSEYVRNQQTIGARKELQKELQEQMSRGDPFKDIILYVKEEMKKNNIPEPVVIGIVWSSVMSTVEWNKKEELVAEQAIKHLKQYSPLLAAFTTQGQSELTLLLKIQEYCYDNIHFMKAFQKIVVLFYKAEVLSEEPILKWYKDAHVAKGKSVFLEQMKKFVEWLKNAEEESESEGEEGD", "length": 419, "header": "tr|A0A9J7JAC4-1|A0A9J7JAC4_CRIGR Isoform 1 of Basic leucine zipper and W2 domain-containing protein 1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Bzw1 PE=3 SV=1 CANONICAL=A0A9J7JAC4-1" }, "locus": {} }, { 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This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027247589", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027247589" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JAD0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JAD0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113832899", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JAD0", "locus": {} } ], "crossref": [ { "id": "A0A9J7JAD0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JAD0", "database": "AlphaFoldDB", "categories": [] }, { "id": "113832899", "url": "https://www.ncbi.nlm.nih.gov/gene/113832899", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": 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ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 100% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027258750", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027258750" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JAK4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JAK4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113834361", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JAK4", "locus": {} } ], "crossref": [ { "id": "A0A9J7JAK4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JAK4", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd09851", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd09851", "database": "CDD", "categories": [ "Protein 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"url": "https://www.uniprot.org/uniprotkb/A0A9J7JB52/entry#names_and_taxonomy" } ] }, { "name": "high mobility group nucleosome-binding domain-containing protein 5-like", "type": "synonym", "evidence": [ { "id": "XP_027253947", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253947" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 100% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027253947", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253947" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JB52", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JB52" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113833724", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JB52", "locus": {} } ], "crossref": [ { "id": "A0A9J7JB52", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JB52", "database": "AlphaFoldDB", "categories": [] }, { "id": "113833724", "url": "https://www.ncbi.nlm.nih.gov/gene/113833724", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:113833724", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113833724", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_027253947", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253947", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JB52", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JB52", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JB52-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JB52-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVGGLEFGRAICGPHSQLITTSRVGRACPLSKRWRWTGRGEDGGRTGRGRWRLDRKRKTEAGREEEDGGWTGRGRRRPDGKRKTEAGREEEDRSWTGRGRRRLDGKRKIEAGREEEDGGWTGRGRRRLDGKRKTEAGREEEDGGRTGRGRRRPDGKRKTEAGREEEDGGWTEEEDGGWTGRGRRRPDGKRKTEAGREEEDGGRTGRGRRRPDGKRKTEAGREEEDGGRTGRGRRRPDGKRKTEAGREEEDRSWTGRGPQAG", "length": 261, "header": "tr|A0A9J7JB52-1|A0A9J7JB52_CRIGR Isoform 1 of High mobility group nucleosome-binding domain-containing protein 5-like OS=Cricetulus griseus OX=10029 GN=LOC113833724 PE=4 SV=1 CANONICAL=A0A9J7JB52-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JB52-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JB52/entry#A0A9J7JB52-1", "sequence": { "sequence": "MVGGLEFGRAICGPHSQLITTSRVGRACPLSKRWRWTGRGEDGGRTGRGRWRLDRKRKTEAGREEEDGGWTGRGRRRPDGKRKTEAGREEEDRSWTGRGRRRLDGKRKIEAGREEEDGGWTGRGRRRLDGKRKTEAGREEEDGGRTGRGRRRPDGKRKTEAGREEEDGGWTEEEDGGWTGRGRRRPDGKRKTEAGREEEDGGRTGRGRRRPDGKRKTEAGREEEDGGRTGRGRRRPDGKRKTEAGREEEDRSWTGRGPQAG", "length": 261, "header": "tr|A0A9J7JB52-1|A0A9J7JB52_CRIGR Isoform 1 of High mobility group nucleosome-binding domain-containing protein 5-like OS=Cricetulus griseus OX=10029 GN=LOC113833724 PE=4 SV=1 CANONICAL=A0A9J7JB52-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027254039.1. 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Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027260386", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260386" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JBH2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBH2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "CUNH16orf54", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBH2", "locus": {} } ], "crossref": [ { "id": "A0A9J7JBH2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JBH2", "database": "AlphaFoldDB", "categories": [] }, { "id": "100752250", "url": "https://www.ncbi.nlm.nih.gov/gene/100752250", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR031499", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031499", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100752250", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752250", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JBH2", "url": "https://www.orthodb.org/?gene=A0A9J7JBH2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR36134", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36134", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR36134:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR36134:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15755", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15755", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027260386", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260386", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JBH2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBH2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JBH2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBH2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPSTPGQPSGHTEGVPEPTAEAAMWAAFPCGPCIPIMLGLASLTAFFIITTAVLAERLFRRPHPDSSKHAPTLVWRPGGELWIEPTSSARERSEDWYGSSIPLLMDRAPDPPTPGGTLEGRATAPPAPSIPHSSPSSLVPQTPPEVPAQSTFWRPQAQEERLHATGLVSWVEPDMSQEAGMQVGSPKSWRMRQGSLEPDWGLQPRVTLEQISAFWKREGRTSVGF", "length": 225, "header": "tr|A0A9J7JBH2-1|A0A9J7JBH2_CRIGR Isoform 1 of Transmembrane protein C16orf54 homolog OS=Cricetulus griseus OX=10029 GN=CUNH16orf54 PE=4 SV=1 CANONICAL=A0A9J7JBH2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JBH2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBH2/entry#A0A9J7JBH2-1", "sequence": { "sequence": "MPSTPGQPSGHTEGVPEPTAEAAMWAAFPCGPCIPIMLGLASLTAFFIITTAVLAERLFRRPHPDSSKHAPTLVWRPGGELWIEPTSSARERSEDWYGSSIPLLMDRAPDPPTPGGTLEGRATAPPAPSIPHSSPSSLVPQTPPEVPAQSTFWRPQAQEERLHATGLVSWVEPDMSQEAGMQVGSPKSWRMRQGSLEPDWGLQPRVTLEQISAFWKREGRTSVGF", "length": 225, "header": "tr|A0A9J7JBH2-1|A0A9J7JBH2_CRIGR Isoform 1 of Transmembrane protein C16orf54 homolog OS=Cricetulus griseus OX=10029 GN=CUNH16orf54 PE=4 SV=1 CANONICAL=A0A9J7JBH2-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 113, "start_aa": "Thr", "end_pos": 113, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr113", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 86, "start_aa": "Thr", "end_pos": 86, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr86", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { 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}, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7JBH3-1", "uniprot_ac": "A0A9J7JBH3", "uniprot_id": "A0A9J7JBH3_CRIGR", "mass": { "chemical_mass": 106187.0, "monoisotopic_mass": 106187.0 }, "refseq": { "ac": "XP_027254488", "name": "LOW QUALITY PROTEIN: zinc finger protein 431 isoform X5", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027254488" }, "gene_names": [ { "name": "LOC100765287", "type": "recommended", "evidence": [ { "id": "A0A9J7JBH3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBH3" } ] }, { "name": "LOC100765287", "type": "synonym", "evidence": [ { "id": "XP_027254488", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027254488" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: zinc finger protein 431 isoform X5", "type": "synonym", "evidence": [ { "id": "XP_027254488", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027254488" }, { "id": "A0A9J7JBH3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBH3/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048602.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027254488.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027254488", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027254488" } ] }, { "annotation": "May be involved in transcriptional regulation.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JBH3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBH3#function" }, { "database": "UniProtKB", "id": "ARBA00003767", "url": "https://www.uniprot.org/uniprotkb/ARBA00003767#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JBH3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBH3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100765287", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBH3", "locus": {} } ], "crossref": [ { "id": "A0A9J7JBH3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JBH3", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100765287", "url": "https://www.ncbi.nlm.nih.gov/gene/100765287", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050752", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050752", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100765287", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100765287", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JBH3", "url": "https://www.orthodb.org/?gene=A0A9J7JBH3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24384", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24384", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24384:SF247", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24384:SF247", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13465", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13465", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13912", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13912", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027254488", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027254488", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JBH3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBH3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JBH3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBH3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNTMTYDDLHIDFTWEEWTLLDTSQKNLYKDVMLETYMNLNDIGYSWEDHTIEEHCPRSKRHGRHERSHTGEKPYECNQCGKAFTRYSSLQIHERSHTGEKPYECNQCGKAFAQKSALKVHKRTHSGEKPYECNYCGKAFAQHSTLKMHERSHTGEKPYECNQCGKAFASYSLLRTHIRIHTGEKPYECNQCGKAFAQHSYLQVHKRIHSGEKPYECNHCGKAFVSQRHLQIHERSHTGEKPYECNQCDKAFAQHSALQVHKRTHSGEKPYECNYCGKAFAQHSTLKMHKRSHTGEKPYECNQCGKAFAKHNTLRMHKRSHTGEKPYECNYCGKVFAHNNTLQMHIRTHTGEKPYECNQCGKAFAQHSALQVHKRIHSGEKPYECNHCGKAFARHCSLQVHKRTHSGEKPYECNHCGKAFAQYCSLQVHKRIHSGEKPYECNHCGKAFSQHCSLQVHKRTHSGVKPYECNQCGKVFAQHNYLQRHKRTHSGEKPYECNLCGKAFAQHIHLQTHKRTHTGEKPYECNQCGKAFTDHSALHVHKRTHTGEKPYECNQCSKAFARHSHLQIHKRIHTGEKPYECNQCGKAFSQHSHLQTHKRIHTGEKSYECNQCGKRFTNHSALRVHKITHIERNNLNIINVVKPLLSIYIFKYIKEHTMGRNPMNVISVVKSLLSRVILKCIEGHILEKNPMNVISVVKPSHVTVIFKDIKEYILERNLMNVIIVVKPLLSTVIFKRIKGHILERNLMNVISVVKPLLITMLFVCIKEHILERNLMNVVNVVKPLLSTVILKCIKEHMLERNHMNVISVVKPILITLLFMSIKKHILDRNHLNVINAVKPLLSIFIFKYIKDHIIGRNPMNVFLKHIERHILGINHFQVITVVKLFHVSGDFEIITKNHSAVKCSQFGLILHFIQE", "length": 915, "header": "tr|A0A9J7JBH3-1|A0A9J7JBH3_CRIGR Isoform 1 of LOW QUALITY PROTEIN: zinc finger protein 431 isoform X5 OS=Cricetulus griseus OX=10029 GN=LOC100765287 PE=3 SV=1 CANONICAL=A0A9J7JBH3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JBH3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBH3/entry#A0A9J7JBH3-1", "sequence": { "sequence": 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QUALITY PROTEIN: zinc finger protein 431 isoform X5 OS=Cricetulus griseus OX=10029 GN=LOC100765287 PE=3 SV=1 CANONICAL=A0A9J7JBH3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"categories": [ "Protein Classification" ] }, { "id": "PTHR13800:SF9", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13800:SF9", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF18139", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18139", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23317", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23317", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF25508", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF25508", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027251791", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027251791", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JBR0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBR0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JBR0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBR0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKTCCFPEHGRRRESICKCGYAQSQHIEGTQINQNEKWNYKKHTKEFPTDAFGDIQFETLGKKGKYIRLSCDTDSETLYELLTQHWHLKTPNLVISVTGGAKNFALKPRMRKIFSRLIYIAQSKGSGQGDVESWSVAGQFQFWFPFRLVYRLLPRRLARSLCAWILTGGTHYGLMKYIGEVVRDNTISRNSEENIVAIGIAAWGMVSNRDTLIRNCNDEGYFSAQYIMDDFKRDPLYILDNNHTHLLLVDNGCHGHPTVEAKLRNQLEKYISERTSQDSNYGGKIPIVCFAQGGGRETLKAINTSIKSKIPCVVVEGSGQIADVIASLVEVEDVLTSSMVKEKLVRFLPRTVSRLPEEEIESWIKWLKEILECSHLLTVIKMEEAGDEIVSNAISYALYKAFSTNEQDKDNWNGQLKLLLEWNQLDLASDEIFTNDRRWESADLQEVMFTALIKDRPKFVRLFLENGLNLQKFLTNDVLTELFSTHFSTLVYRNLQIAKNSYNDALLTFVWKLVANFRRSFWKEDRSSREDLDVELHDASLTTRHPLQALFIWAILQNKKELSKVIWEQTKGCTLAALGASKLLKTLAKVKNDINAAGESEELANEYETRAVELFTECYSNDEDLAEQLLVYSCEAWGGSNCLELAVEATDQHFIAQPGVQNFLSKQWYGEISRDTKNWKIILCLFVIPLVGCGLVSFRKKPIDKHKKLLWYYVAFFTSPFVVFSWNVVFYIAFLLLFAYVLLMDFHSVPHTPELILYALVFVLFCDEVRQWYMNGVNYFTDLWNVMDTLGLFYFIAGIVFRLHSSNRSSLYSGRVIFCLDYIIFTLRLIHIFTVSRNLGPKIIMLQRMLIDVFFFLFLFAVWMVAFGVARQGILRQNEQRWRWIFRSVIYEPYLAMFGQVPSDVDGTTYDFSHCTFSGNESKPLCVEMDENHLPRFPEWITIPLVCIYMLSTNILLVNLLVAMFGYTVGTVQENNDQVWKFQRYFLVQEYCNRLNIPFPFVVFAYFYMVVKKCFKCCCKEKNMESSACCFRNEDNETLAWEGVMKENYLVKINTKANDSSEEMRHRFRQLDTKLNDLKVLLKEIANKIK", 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"length": 1090, "header": "tr|A0A9J7JBR0-1|A0A9J7JBR0_CRIGR Isoform 1 of Transient receptor potential cation channel subfamily M member 8 isoform X3 OS=Cricetulus griseus OX=10029 GN=Trpm8 PE=4 SV=1 CANONICAL=A0A9J7JBR0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JBR0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBR0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JBR0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBR0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100754189", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754189", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JBR0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBR0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "ligand-gated calcium channel activity", "id": "GO:0099604", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0099604", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JBR0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBR0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1036, "end_pos": 1038, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1058, "end_pos": 1060, "annotation": "n_glycosylation_sequon" }, { "start_pos": 242, "end_pos": 244, "annotation": "n_glycosylation_sequon" }, { "start_pos": 303, "end_pos": 305, "annotation": "n_glycosylation_sequon" }, { "start_pos": 807, "end_pos": 809, "annotation": "n_glycosylation_sequon" }, { "start_pos": 920, "end_pos": 922, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JBR0", "database": "UniProtKB", "url": 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"monoisotopic_mass": 57055.0 }, "refseq": { "ac": "XP_027251832", "name": "keratin, type II cuticular Hb2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027251832" }, "gene_names": [ { "name": "Krt82", "type": "recommended", "evidence": [ { "id": "A0A9J7JBS1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBS1" } ] }, { "name": "Krt82", "type": "synonym", "evidence": [ { "id": "XP_027251832", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027251832" } ] } ], "protein_names": [ { "name": "Keratin, type II cuticular Hb2", "type": "synonym", "evidence": [ { "id": "A0A9J7JBS1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBS1/entry#names_and_taxonomy" } ] }, { "name": "keratin, type II cuticular Hb2", "type": "synonym", "evidence": [ { "id": "XP_027251832", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027251832" } ] } ], "function": [ { "annotation": 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This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. 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"MEQPAGGTGSLRPVTGDDSSSELGTCHELLHRLQELEAENSALAQANENQRETYERCLDEVANHVVQALLNQKDLREECVKLKKRVFDLERQNQMLSALLQQKLQLTANSLPQIPLTPLQTPSEPPASPSLNAAEGPATSLPLGHCAGQREVCWEQQLRPGGPGPPATPPPVLDALSPFLRKKAQILEVLRALEETDPLLLCSSATPWRPPGQGPSSPEPINGELCGPPQPEPSPWAPYLLLGPGSLGALLHWERLLGGSGEEGGIRQPWVPTRAPPPAQGPSSGPHCAPGSSSSSSSDEAGDPNEAPSPDTLLGALAHKQVNLGQLLEDTETYLQAFLAGAAGPLNGDHPGAGKPSSPDPGAPQLSKSKGLPKSAWSGGTPEANRLGFGATSEGQGPLPFLSMFMGAGDAPLASRPGHPHSSSQVKSKLQIGLPSPGEAQEPLLPSPARGLKFLKLPPASEKVPSPGGPQLSPQLPRNSRIPCRNSGSDGSPSPLLARRGLGGGELSPDGAQGLPSSPSPCSTIPDSVQLRPSQSSVSTTLSTGPAASPCFENILDLSRGAFRRSSPEPPPSPLQVPTYSQLTLEVPQAPEVLRSPGASSPGLSESCPYGSPQDKSLEKAGSESPHPSRRTPGGSSKKPGQGSGRRPGDPSHTPLRDRLAALGKLKTGPEGPLGLEKNGGPARPGTEKARGLGRSGESTGDMPPTTRPLEQTEAKGILRGAVALGTSSLKQQELGLTDPGTRVYSSHSMGARVDLEPISPRSCLTKVELAKSRLAGALCPQMPRTPAKVPTPVPSLSKPKSPHNSPTKLPSKSPTKVVPRLVAPLGTKEPSRSDKGKGTAWADCSSTVGQPTSPVPGPTDASQGSEGPAPHSAIEEKVMKGIEENVLRLQGQERTPGSEAKHRNTSSIASWFGLKKSKLPALNRRTEATKSKEGASGGSPLRKEVKTDTRKLEAESLNISKLMAKAEDLRRALEEEKAYLSSRARPRPSGPATVPGSGLGQVQGQLAGMYQGADTFMQQLLNRVDGKELPPKSWREPKPEYGDFQPVSTDPKSPWPACGPRNGLVGPLQGCGKPSGKPSSEPGRREEIPSDVSLAEPVSTAHFTACGSLTRTLDSGIGTFPPPDHGNSGTPSKNLPKTKSLRLEPPPGAPLARPPALTKVPRRAHTLEREVPGIEELLVSGRHPSMPAFPGLLTAPSGHRSHQTCPDDPCEDPGPPPPVQLAKNWTFPNTRAASSSSDPFLCPSRQLEGLPRTPMALPVDRKQSLEPSRTSTPQGPAFGGSRTPSTSDMGEEGRVASGGAAGLETSESLSDSLYDSLSSCGSQG", "length": 1325, "header": "tr|A0A9J7JC47-1|A0A9J7JC47_CRIGR Isoform 1 of Nck-associated protein 5-like OS=Cricetulus griseus OX=10029 GN=Nckap5l PE=4 SV=1 CANONICAL=A0A9J7JC47-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JC47-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JC47/entry#A0A9J7JC47-1", "sequence": { "sequence": "MEQPAGGTGSLRPVTGDDSSSELGTCHELLHRLQELEAENSALAQANENQRETYERCLDEVANHVVQALLNQKDLREECVKLKKRVFDLERQNQMLSALLQQKLQLTANSLPQIPLTPLQTPSEPPASPSLNAAEGPATSLPLGHCAGQREVCWEQQLRPGGPGPPATPPPVLDALSPFLRKKAQILEVLRALEETDPLLLCSSATPWRPPGQGPSSPEPINGELCGPPQPEPSPWAPYLLLGPGSLGALLHWERLLGGSGEEGGIRQPWVPTRAPPPAQGPSSGPHCAPGSSSSSSSDEAGDPNEAPSPDTLLGALAHKQVNLGQLLEDTETYLQAFLAGAAGPLNGDHPGAGKPSSPDPGAPQLSKSKGLPKSAWSGGTPEANRLGFGATSEGQGPLPFLSMFMGAGDAPLASRPGHPHSSSQVKSKLQIGLPSPGEAQEPLLPSPARGLKFLKLPPASEKVPSPGGPQLSPQLPRNSRIPCRNSGSDGSPSPLLARRGLGGGELSPDGAQGLPSSPSPCSTIPDSVQLRPSQSSVSTTLSTGPAASPCFENILDLSRGAFRRSSPEPPPSPLQVPTYSQLTLEVPQAPEVLRSPGASSPGLSESCPYGSPQDKSLEKAGSESPHPSRRTPGGSSKKPGQGSGRRPGDPSHTPLRDRLAALGKLKTGPEGPLGLEKNGGPARPGTEKARGLGRSGESTGDMPPTTRPLEQTEAKGILRGAVALGTSSLKQQELGLTDPGTRVYSSHSMGARVDLEPISPRSCLTKVELAKSRLAGALCPQMPRTPAKVPTPVPSLSKPKSPHNSPTKLPSKSPTKVVPRLVAPLGTKEPSRSDKGKGTAWADCSSTVGQPTSPVPGPTDASQGSEGPAPHSAIEEKVMKGIEENVLRLQGQERTPGSEAKHRNTSSIASWFGLKKSKLPALNRRTEATKSKEGASGGSPLRKEVKTDTRKLEAESLNISKLMAKAEDLRRALEEEKAYLSSRARPRPSGPATVPGSGLGQVQGQLAGMYQGADTFMQQLLNRVDGKELPPKSWREPKPEYGDFQPVSTDPKSPWPACGPRNGLVGPLQGCGKPSGKPSSEPGRREEIPSDVSLAEPVSTAHFTACGSLTRTLDSGIGTFPPPDHGNSGTPSKNLPKTKSLRLEPPPGAPLARPPALTKVPRRAHTLEREVPGIEELLVSGRHPSMPAFPGLLTAPSGHRSHQTCPDDPCEDPGPPPPVQLAKNWTFPNTRAASSSSDPFLCPSRQLEGLPRTPMALPVDRKQSLEPSRTSTPQGPAFGGSRTPSTSDMGEEGRVASGGAAGLETSESLSDSLYDSLSSCGSQG", "length": 1325, "header": "tr|A0A9J7JC47-1|A0A9J7JC47_CRIGR Isoform 1 of Nck-associated protein 5-like OS=Cricetulus griseus OX=10029 GN=Nckap5l PE=4 SV=1 CANONICAL=A0A9J7JC47-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1131, "start_aa": "Thr", "end_pos": 1131, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1131", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 168, "start_aa": "Thr", "end_pos": 168, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr168", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 860, "start_aa": "Thr", "end_pos": 860, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr860", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JC47", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JC47" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JC47", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JC47" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100757554", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757554", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "microtubule plus-end", "id": "GO:0035371", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035371", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JC47", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JC47" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "microtubule depolymerization", "id": "GO:0007019", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007019", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JC47", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JC47" } ], "pmid": "" }, { "name": "microtubule bundle formation", "id": "GO:0001578", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001578", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JC47", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JC47" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1225, "end_pos": 1227, "annotation": "n_glycosylation_sequon" }, { "start_pos": 905, "end_pos": 907, "annotation": "n_glycosylation_sequon" }, { "start_pos": 959, "end_pos": 961, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JC47", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JC47" }, { "id": "PF15246", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15246" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Nck-associated protein 5 C-terminal", "eco_id": "ECO_0000259", "start_pos": 872, "end_pos": 1173, "start_aa": "His", "end_aa": "Pro", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 168, 860, 1131 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1225, "end_pos": 1227 }, { "start_pos": 905, "end_pos": 907 }, { "start_pos": 959, "end_pos": 961 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 3 }, { "field": "total_sites", "count": 3 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 3 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 3 }, { "field": "exact_o_linked_sites", "count": 3 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { 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"count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7JCE3-1", "uniprot_ac": "A0A9J7JCE3", "uniprot_id": "A0A9J7JCE3_CRIGR", "mass": { "chemical_mass": 77426.0, "monoisotopic_mass": 77426.0 }, "refseq": { "ac": "XP_027255885", "name": "zinc finger protein 728 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027255885" }, "gene_names": [ { "name": "LOC100753071", "type": "recommended", "evidence": [ { "id": "A0A9J7JCE3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCE3" } ] }, { "name": "LOC100753071", "type": "synonym", "evidence": [ { "id": "XP_027255885", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027255885" } ] } ], "protein_names": [ { "name": "Zinc finger protein 728 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7JCE3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCE3/entry#names_and_taxonomy" } ] }, { "name": "zinc finger protein 728 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027255885", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027255885" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027255885", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027255885" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JCE3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCE3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100753071", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCE3", "locus": {} } ], "crossref": [ { "id": "A0A9J7JCE3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JCE3", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100753071", "url": "https://www.ncbi.nlm.nih.gov/gene/100753071", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100753071", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753071", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JCE3", "url": "https://www.orthodb.org/?gene=A0A9J7JCE3", "database": 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"A0A9J7JCE3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCE3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVLWTPNFRVQTSNFASSPKLGARPAQRWAWISDMEDILSFWDVVIYFSAEEWECLGPAQWKLYRDVMLENYNNLVFLGLASCKPYLVTFLEQRHGPSHVKRQAAGAMQAGKKCYTCKECGKVFDLKSKFSKHQRIHLRVKPYKCEECEKAFRVPSLLREHKRIHTGEKPYKCEVCAKAFHGPSLLNKHKRIHSREKPFNCQVSGKAFHFSTVLSEYKKIYTVQKPYKCEACDKAFRFPSLLSEHKRIHTGEKPYKCEVCDKAFHAPSLLSVHKRIHTGEKPYKCEVCGKAFRVPSVLSKHKVIHTGEKPYKCELCGKAFRGPSLLSVHKKIHTGVKPYKCEVCDKAFHYPSILSKHKRIHTGEKPYKCEVCGNTFRFPSLLSVHKRIHTGEKPYRCEVCDKDFHCPSLLSKHKRIHTGDKPYKCEVCGKAFRAPSVLSVHRRIHTGETPYMCEVCGKAFRCPSLLSKHKRIHTGEKLYKCEVCGKAFHCPSLLSKHKRIHTGEKHHKCKECGLAFYCPSSLSEHKRIHTGEKPYNCEVCGEAFRTSRILSTHLITHSGEKPFKCEECGKAFSTKSYLCQHKLTHNVENPFKCKECGKVLNNMKNFKDHQRIHSGEKPYRCKECGKDFRSSTARSKHRIIHTGEKRYKCEKCGKSYYQSSGLKQHQRIHL", "length": 670, "header": "tr|A0A9J7JCE3-1|A0A9J7JCE3_CRIGR Isoform 1 of Zinc finger protein 728 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100753071 PE=3 SV=1 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PE=3 SV=1 CANONICAL=A0A9J7JCE3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"eco_id": "ECO_0000259", "start_pos": 39, "end_pos": 110, "start_aa": "Leu", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7JCK4-1", "uniprot_ac": "A0A9J7JCK4", "uniprot_id": "A0A9J7JCK4_CRIGR", "mass": { "chemical_mass": 46818.0, "monoisotopic_mass": 46818.0 }, "refseq": { "ac": "XP_027262171", "name": "interferon-induced protein with tetratricopeptide repeats 3-like isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262171" }, "gene_names": [ { "name": "LOC100773381", "type": "recommended", "evidence": [ { "id": "A0A9J7JCK4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCK4" } ] }, { "name": "LOC100773381", "type": "synonym", "evidence": [ { "id": "XP_027262171", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262171" } ] } ], "protein_names": [ { "name": "Interferon-induced protein with tetratricopeptide repeats 3-like isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7JCK4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCK4/entry#names_and_taxonomy" } ] }, { "name": "interferon-induced protein with tetratricopeptide repeats 3-like isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027262171", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262171" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027262171", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027262171" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JCK4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCK4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100773381", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCK4", "locus": {} } ], "crossref": [ { "id": "A0A9J7JCK4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JCK4", "database": "AlphaFoldDB", "categories": [] }, { "id": "100773381", "url": "https://www.ncbi.nlm.nih.gov/gene/100773381", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011990", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011990", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019734", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019734", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100773381", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773381", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JCK4", "url": "https://www.orthodb.org/?gene=A0A9J7JCK4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JJ26", "url": "https://www.orthodb.org/?gene=A0A9J7JJ26", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10271", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10271", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR10271:SF3", "url": 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"MSEVTRNSLEKILPQLKCHFTWNLFWEGSLSSHVEDRVRNQIDLLNSEHKATMYNLLAYIKYLDGEKEAALECLRQAEVSVEPKQDDQAEIRHLVTWGNYAWIYYHMGRLSEAQAYVDKVRHVCEKYANPYSVECPELDCEEGWTRLKCGRNERAKMCFLKALEEKPSDPECSSGLAIATSRLEEQPEKQFAVDALKQAMELNAENQYVKVLLALKLQKMGEEAEGERLIDDALRKAPDQADVLQKASQFYQKKGNLDRANTLLVRALRSTENKTPLYTLVMCRYRERLKQLQKTGNAGSSDSLEKMEELRQLTMEYMRQALQRKQSRLNSYSDLIDYPEVKRCCQLVFGKESPSAEEQQLYQSYCNLQEYHQRSEGLAALKELLKSCSLTETASIEKEGMKEQA", "length": 405, "header": "tr|A0A9J7JCK4-1|A0A9J7JCK4_CRIGR Isoform 1 of Interferon-induced protein with tetratricopeptide repeats 3-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100773381 PE=3 SV=1 CANONICAL=A0A9J7JCK4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JCK4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCK4/entry#A0A9J7JCK4-1", "sequence": { "sequence": 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"MSEVTRNSLEKILPQLKCHFTWNLFWEGSLSSHVEDRVRNQIDILNSEHKATMFNLLAYIKYLDGEKEAALECLRQAEVSVEPKQDDQAEIRHLVTWGNYAWIYYHMGRLSEAQAYVDKVRHVCEKYANPYSVECPELDCEEGWTRLKCGRNERAKMCFLKALEEKPSDPECSSGLAIATSRLEEQPEKQFAVDALKQAMELNAENQYVKVLLALKLQKMGEEAEGERLIDDALRKAPDQADVLQKASQFYQKKGNLDRANTLLVRALRSTENKTPLYSLVMCRYRERLKQLQKTGNAGSSDSLEKMEELRQLTMEYMRQALQRKQSRLNSYSDLIDYPEVKRCCQLVFGKESPSAEEQQLYQSYCNLQEYHQRSEGLAALKELLKSCSLTETASIEKEGMKEQA", "length": 405, "header": "tr|A0A9J7JJ26-1|A0A9J7JCK4_CRIGR Computationally mapped isoform of Interferon-induced protein with tetratricopeptide repeats 3-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100773381 PE=3 SV=1 CANONICAL=A0A9J7JCK4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027251223", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027251223" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JCT4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCT4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113831909", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCT4", "locus": {} } ], "crossref": [ { "id": "A0A9J7JCT4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JCT4", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd02872", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02872", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "113831909", "url": "https://www.ncbi.nlm.nih.gov/gene/113831909", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001223", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001223", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011583", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011583", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017853", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017853", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029070", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029070", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050314", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050314", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113831909", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113831909", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JCT4", "url": "https://www.orthodb.org/?gene=A0A9J7JCT4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11177", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11177", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11177:SF140", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11177:SF140", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00704", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00704", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027251223", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027251223", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JCT4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCT4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JCT4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCT4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDKLLLVAGLAIVLSAQLGSAYQLMCYYTRWAKDRPDVGSFKPGDIDPNLCTHIIYAFAGMQNNEITTISPEDLKEYEALNNLKTRKMELKTLLAIGGSDFGSMTFSAMVSTAQNRQTFIKSVIKFLRHYNFDGLNLDWQYPASRGSPPKDKHLFSLLVKEIRDAFEKESLEQHKTRLLITATVAGIIKIIEDGYKIPDLSQSLDYIQVMTYDLHSYQDGYTGENSPLYKYPEDHGIYAYLNVDYIMTYWKNHGADPKKLIVGFPAYGQTFTLSDPSNNGLRAPTIGAGPPGKYTNKAGLWAYYEICYFLNHGATEEWNAAQEVPYAFKDREWVGYDNPASFQMEAQWLKDNNFGGAMVWPLDMDDFTGSFCNQGKFPLTTALAKALNVQSQSYKATCREEL", "length": 402, "header": "tr|A0A9J7JCT4-1|A0A9J7JCT4_CRIGR Isoform 1 of Chitinase-like protein 4 OS=Cricetulus griseus OX=10029 GN=LOC113831909 PE=4 SV=1 CANONICAL=A0A9J7JCT4-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JCT4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCT4/entry#A0A9J7JCT4-1", "sequence": { "sequence": "MDKLLLVAGLAIVLSAQLGSAYQLMCYYTRWAKDRPDVGSFKPGDIDPNLCTHIIYAFAGMQNNEITTISPEDLKEYEALNNLKTRKMELKTLLAIGGSDFGSMTFSAMVSTAQNRQTFIKSVIKFLRHYNFDGLNLDWQYPASRGSPPKDKHLFSLLVKEIRDAFEKESLEQHKTRLLITATVAGIIKIIEDGYKIPDLSQSLDYIQVMTYDLHSYQDGYTGENSPLYKYPEDHGIYAYLNVDYIMTYWKNHGADPKKLIVGFPAYGQTFTLSDPSNNGLRAPTIGAGPPGKYTNKAGLWAYYEICYFLNHGATEEWNAAQEVPYAFKDREWVGYDNPASFQMEAQWLKDNNFGGAMVWPLDMDDFTGSFCNQGKFPLTTALAKALNVQSQSYKATCREEL", "length": 402, "header": "tr|A0A9J7JCT4-1|A0A9J7JCT4_CRIGR Isoform 1 of Chitinase-like protein 4 OS=Cricetulus griseus OX=10029 GN=LOC113831909 PE=4 SV=1 CANONICAL=A0A9J7JCT4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JCT4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCT4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JCT4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCT4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:113831909", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113831909", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JCT4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCT4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "carbohydrate metabolic process", "id": "GO:0005975", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005975", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JCT4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCT4" } ], "pmid": "" }, { "name": "chitin catabolic process", "id": "GO:0006032", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006032", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JCT4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCT4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "chitin binding", "id": "GO:0008061", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008061", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JCT4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCT4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JCT4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCT4" }, { "id": "PS51910", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51910" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "GH18", "eco_id": "ECO_0000259", "start_pos": 22, "end_pos": 390, "start_aa": "Tyr", "end_aa": "Gln", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7JCU6-1", "uniprot_ac": "A0A9J7JCU6", "uniprot_id": "A0A9J7JCU6_CRIGR", "mass": { "chemical_mass": 70990.0, "monoisotopic_mass": 70990.0 }, "refseq": { "ac": "XP_027253278", "name": "ephexin-1 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253278" }, "gene_names": [ { "name": "Ngef", "type": "recommended", "evidence": [ { "id": "A0A9J7JCU6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCU6" } ] }, { "name": "Ngef", "type": "synonym", "evidence": [ { "id": "XP_027253278", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253278" } ] } ], "protein_names": [ { "name": "Ephexin-1 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7JCU6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCU6/entry#names_and_taxonomy" } ] }, { "name": "ephexin-1 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027253278", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253278" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027253278", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253278" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JCU6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCU6" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ngef", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCU6", "locus": {} } ], "crossref": [ { "id": "A0A9J7JCU6", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JCU6", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00160", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00160", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd01221", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01221", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd11939", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11939", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100773544", "url": "https://www.ncbi.nlm.nih.gov/gene/100773544", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000219", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000219", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001849", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035635", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035635", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035899", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035899", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036028", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036028", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047270", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047270", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047271", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047271", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055251", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055251", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100773544", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773544", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JCU6", "url": "https://www.orthodb.org/?gene=A0A9J7JCU6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12845", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12845", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12845:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12845:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00018", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00018", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00621", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00621", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22697", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22697", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027253278", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253278", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JCU6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCU6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JCU6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JCU6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K5R0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K5R0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K5R0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K5R0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027253775", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253775" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JD17", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD17" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113833670", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD17", "locus": {} } ], "crossref": [ { "id": "A0A9J7JD17", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JD17", "database": "AlphaFoldDB", "categories": [] }, { "id": "113833670", "url": "https://www.ncbi.nlm.nih.gov/gene/113833670", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:113833670", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113833670", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "XP_027253775", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253775", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JD17", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD17", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JD17-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD17-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MARAAAKLLPNNKERRHGRRSSSRDGSPNCEWSWGPGPTGEHAELGRAGATHPSLAGPALAPAAAGARPGAGKRRRRGPGRGGPRVTWAPRRSVPSLSGSGPRRPAPGGPSPAAAPARGPRGRAAGAPEPPRRGGPHSRAAGSRHALPPRGRPRSQARRGKGLQRTAGGRKHGLRHPSRSVTAAATTTRAVLLLPTCRKDTEHARAETTSGLVMLPSEFLQDKLLDHSKSFLKSCGRNHTHTLRFTLCPFLPRSVSSQPGLNLFNQKAPEAVI", "length": 273, "header": "tr|A0A9J7JD17-1|A0A9J7JD17_CRIGR Isoform 1 of Translation initiation factor IF-2-like OS=Cricetulus griseus OX=10029 GN=LOC113833670 PE=4 SV=1 CANONICAL=A0A9J7JD17-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JD17-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD17/entry#A0A9J7JD17-1", "sequence": { "sequence": "MARAAAKLLPNNKERRHGRRSSSRDGSPNCEWSWGPGPTGEHAELGRAGATHPSLAGPALAPAAAGARPGAGKRRRRGPGRGGPRVTWAPRRSVPSLSGSGPRRPAPGGPSPAAAPARGPRGRAAGAPEPPRRGGPHSRAAGSRHALPPRGRPRSQARRGKGLQRTAGGRKHGLRHPSRSVTAAATTTRAVLLLPTCRKDTEHARAETTSGLVMLPSEFLQDKLLDHSKSFLKSCGRNHTHTLRFTLCPFLPRSVSSQPGLNLFNQKAPEAVI", "length": 273, "header": "tr|A0A9J7JD17-1|A0A9J7JD17_CRIGR Isoform 1 of Translation initiation factor IF-2-like OS=Cricetulus griseus OX=10029 GN=LOC113833670 PE=4 SV=1 CANONICAL=A0A9J7JD17-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 39, "start_aa": "Thr", "end_pos": 39, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr39", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 238, "end_pos": 240 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7JD22-1", "uniprot_ac": "A0A9J7JD22", "uniprot_id": "A0A9J7JD22_CRIGR", "mass": { "chemical_mass": 24861.0, "monoisotopic_mass": 24861.0 }, "refseq": { "ac": "XP_027253797", "name": "PLAC8-like protein 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253797" }, "gene_names": [ { "name": "Plac8l1", "type": "recommended", "evidence": [ { "id": "A0A9J7JD22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD22" } ] }, { "name": "Plac8l1", "type": "synonym", "evidence": [ { "id": "XP_027253797", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253797" } ] } ], "protein_names": [ { "name": "PLAC8-like protein 1", "type": "synonym", "evidence": [ { "id": "XP_027253797", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253797" }, { "id": "A0A9J7JD22", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD22/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027253797", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253797" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JD22", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD22" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Plac8l1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD22", "locus": {} } ], "crossref": [ { "id": "A0A9J7JD22", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JD22", "database": "AlphaFoldDB", "categories": [] }, { "id": "100762432", "url": "https://www.ncbi.nlm.nih.gov/gene/100762432", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006461", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006461", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100762432", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762432", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JD22", "url": "https://www.orthodb.org/?gene=A0A9J7JD22", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15907", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15907", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04749", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04749", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027253797", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253797", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JD22", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD22", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JD22-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD22-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTSGSRISRQHSFKGMLHFGLNPNSEPVSLLFKGKDNQTRRHLVMIWPGHYFSRCPEDVSLFGTHMPLFSLMSSGDEHLLSNLRSQVPARAVVKQPIRGASGRTTVTAIVQTGGDWSTGLFSVCRDRKICFCGLFCPICLECDIARHYGECLCWPLLPGSTFALRIGTRERHKIQGTLCEDWMVVHCCWPFSVCQVARELKIRTSQLYEICAVQAPKDTLV", "length": 221, "header": "tr|A0A9J7JD22-1|A0A9J7JD22_CRIGR Isoform 1 of PLAC8-like protein 1 OS=Cricetulus griseus OX=10029 GN=Plac8l1 PE=3 SV=1 CANONICAL=A0A9J7JD22-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JD22-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD22/entry#A0A9J7JD22-1", "sequence": { "sequence": "MTSGSRISRQHSFKGMLHFGLNPNSEPVSLLFKGKDNQTRRHLVMIWPGHYFSRCPEDVSLFGTHMPLFSLMSSGDEHLLSNLRSQVPARAVVKQPIRGASGRTTVTAIVQTGGDWSTGLFSVCRDRKICFCGLFCPICLECDIARHYGECLCWPLLPGSTFALRIGTRERHKIQGTLCEDWMVVHCCWPFSVCQVARELKIRTSQLYEICAVQAPKDTLV", "length": 221, "header": "tr|A0A9J7JD22-1|A0A9J7JD22_CRIGR Isoform 1 of PLAC8-like protein 1 OS=Cricetulus griseus OX=10029 GN=Plac8l1 PE=3 SV=1 CANONICAL=A0A9J7JD22-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Hb1-like isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7JD25", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD25/entry#names_and_taxonomy" } ] }, { "name": "keratin, type II cuticular Hb1-like isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027253663", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253663" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 7% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027253663", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253663" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JD25", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD25" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113833627", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD25", "locus": {} } ], "crossref": [ { "id": "A0A9J7JD25", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JD25", "database": "AlphaFoldDB", "categories": [] }, { "id": "113833627", "url": "https://www.ncbi.nlm.nih.gov/gene/113833627", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR018039", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018039", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039008", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113833627", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113833627", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JD25", "url": "https://www.orthodb.org/?gene=A0A9J7JD25", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45616", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45616", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45616:SF52", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45616:SF52", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00038", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00038", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027253663", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253663", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JD25", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD25", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JD25-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD25-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MPGEEGLAETPSVCWCEEMKATVQKGVQSPRHSKEALNRLNQAIQQLKTEPCELEKAKDVETLQDMASSSTKGKLAWLEAALQRAKQDMARQLREYQELMIVKLGLDFEIATYRRLLEGEEQRLGLGLGAGREAPGSDVIGGPGLTSVSAPLRAPGLCSRGLDMSAPGGVCALCSSAACVGGFGCLGSREC", "length": 191, "header": "tr|A0A9J7JD25-1|A0A9J7JD25_CRIGR Isoform 1 of Keratin, type II cuticular Hb1-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC113833627 PE=3 SV=1 CANONICAL=A0A9J7JD25-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JD25-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD25/entry#A0A9J7JD25-1", "sequence": { "sequence": "MPGEEGLAETPSVCWCEEMKATVQKGVQSPRHSKEALNRLNQAIQQLKTEPCELEKAKDVETLQDMASSSTKGKLAWLEAALQRAKQDMARQLREYQELMIVKLGLDFEIATYRRLLEGEEQRLGLGLGAGREAPGSDVIGGPGLTSVSAPLRAPGLCSRGLDMSAPGGVCALCSSAACVGGFGCLGSREC", "length": 191, "header": "tr|A0A9J7JD25-1|A0A9J7JD25_CRIGR Isoform 1 of Keratin, type II cuticular Hb1-like isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC113833627 PE=3 SV=1 CANONICAL=A0A9J7JD25-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JD25", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD25" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JD25", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD25" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:113833627", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113833627", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JD25", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD25" } ], "pmid": "" }, { "name": "keratin filament", "id": "GO:0045095", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045095", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JD25", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD25" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "keratinization", "id": "GO:0031424", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031424", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JD25", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD25" } ], "pmid": "" }, { "name": "intermediate filament organization", "id": "GO:0045109", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045109", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JD25", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD25" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "structural constituent of skin epidermis", "id": "GO:0030280", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0030280", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JD25", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD25" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JD25", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD25" }, { "id": "PS51842", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51842" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "IF rod", "eco_id": "ECO_0000259", "start_pos": 1, "end_pos": 124, "start_aa": "Met", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { 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"uniprot_canonical_ac": "A0A9J7JD74-1", "uniprot_ac": "A0A9J7JD74", "uniprot_id": "A0A9J7JD74_CRIGR", "mass": { "chemical_mass": 92566.0, "monoisotopic_mass": 92566.0 }, "refseq": { "ac": "XP_027253882", "name": "protocadherin beta-11-like isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253882" }, "gene_names": [ { "name": "LOC113833705", "type": "recommended", "evidence": [ { "id": "A0A9J7JD74", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD74" } ] }, { "name": "LOC113833705", "type": "synonym", "evidence": [ { "id": "XP_027253882", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253882" } ] } ], "protein_names": [ { "name": "Protocadherin beta-11-like isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7JD74", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD74/entry#names_and_taxonomy" } ] }, { "name": "protocadherin beta-11-like isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027253882", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253882" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027253882", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253882" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JD74", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD74" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC113833705", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD74", "locus": {} } ], "crossref": [ { "id": "A0A9J7JD74", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JD74", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd11304", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11304", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "113833705", "url": "https://www.ncbi.nlm.nih.gov/gene/113833705", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002126", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002126", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013164", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013164", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015919", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015919", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR020894", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020894", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032455", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032455", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050174", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050174", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:113833705", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113833705", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JD74", "url": "https://www.orthodb.org/?gene=A0A9J7JD74", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24028", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24028", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24028:SF334", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24028:SF334", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24028:SF81", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24028:SF81", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00028", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00028", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF08266", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF08266", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16492", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16492", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027253882", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253882", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JD42", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD42", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JD42-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD42-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JD74", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD74", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JD74-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD74-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEVETKKPFVLRILRILWTNQGAHFTELRGGAEGILSEACRKGAMENQGGSCLQTRQVLLLFVFLGMAQAQAKPVRLDVVEEMLSGTLVGNLVKDLGLEVGELSSRGAQVVSKDNKLPLQLHINTGDLLLSEPLDREELCGSNEPCVLHFQVLMKNPLQILQVELQVRDINDNSPVFLEKEMVLEIPENSPVGAVFLLESATDLDVGTNAVKNYVISQSSHFHITIRVNPDGRKYPELVLDKALDYEEERELSLILTALDGGIPPKSGTALVRVEVIDINDNSPEFEHMFYEVKIPENSILGSLVITASAWDLDSGINGEVSYTFSHASEDIQKTFAINKNSGEIRLIEYLDFETTESYSIIVKATDRGGLFGKSTVRIQVIDVNDNSPEIAVSSFISPVPENSPDTLVMIFSIQDKDSGENSRMVCSIPEDLPFVLKSSIENYYHLETEGALDRESRAEYNITITVTDMGTPRLTTQHTITVQVSDVNDNAPSFTQTSYTLFVQENNSPALHIGTISATDSDSGSNAHITYSLLSTHDPQLALSSLISINADNGQLFALRALDYETLQTFEFRVDATDHGSPALSSQALVRVLVLDANDNAPFVLYPLQNASAPCTELLPSAAEPGYLVTKVVAVDRDSGQNAWLSFQLLKATEPGLFTVWAHNGEVRTSRLLSERDAPKHRLLVAVKDNGDPPRSASVTLHVLVVDGFSQPYLPLPEVGHDHAQDKDVLTLYLVIALASVSSLFLLFVLLFVGVRLCRRARAASLGGCSVPEGHFPGHLVDVSGAGTLSQSYQYEVCMMGGTGTNEFKFLKPISPNLPPQFPGKVMEESPTLYNSLGLFRDHN", "length": 845, "header": "tr|A0A9J7JD74-1|A0A9J7JD74_CRIGR Isoform 1 of Protocadherin beta-11-like isoform 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"MEVETKKPFVLRILRILWTNQGAHFTELRGGAEGILSEACRKGAMENQGGSCLQTRQVLLLFVFLGMAQAQAKPVRLDVVEEMLSGTLVGNLVKDLGLEVGELSSRGAQVVSKDNKLPLQLHINTGDLLLSEPLDREELCGSNEPCVLHFQVVLENPLQFYRAELHVRDINDHSPMFLDKEITIKMPESATIGSTFLIENVQDLDIGSNSLQEYSISPNSHFYVKIHDGGNGKIYPELVLDRALDHEEESELRLTLTALDGGSPPRSGTTSILIKVLDINDNAPEFAQSLYEVQVPEDMPIGSSIIAISAKDLDLGNYGIISYSFLQASEGIRKTFDINPTSGEVNLRSLLDFEVIQSYSVNIQATDGGGLSAKCTLLVKVLDINDNAPEVTISSITNTIPENASETLVALFSVRDQDSGDNGRILCSIQDDLPFILKPTFKNFFTLLSEKALDRESKAEYNITITVTDLGTPRLTTQHTITVQVSDVNDNAPAFTETSYTLFVQENNSPALHIGTISATDSDSGSNAHITYSLLPTHDPQLALSSLISINADNGQLFALRALDYEALQTFEFRVGATDQGLPALSSQALVRVLVLDANDNAPFVLHPLQNASAPCTELLPRAAEPGYLITKVVAVDRDSGQNAWLSFQLLKATEPGLFTVWAHNGEVRTSRLLSERDAPKHRLLLLVKDNGDPPRSASVTLQVLVVDGFSQPYLPLPEVAHEPAHEDDVLTFYLVIALASVSSLFLLSVLLFVGVRLCRRARATSLGGCTVPEGPFPGHLVDVSGAGTLSQSHQYEVCLMGGTGTNEFKFLKPVIPSLQLHEASSNMQEKENFRNSLGFNI", "length": 842, "header": "tr|A0A9J7JD42-1|A0A9J7JD74_CRIGR Computationally mapped isoform of Protocadherin beta-11-like isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC113833705 PE=4 SV=1 CANONICAL=A0A9J7JD74-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JD74-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD74/entry#A0A9J7JD74-1", "sequence": { "sequence": "MEVETKKPFVLRILRILWTNQGAHFTELRGGAEGILSEACRKGAMENQGGSCLQTRQVLLLFVFLGMAQAQAKPVRLDVVEEMLSGTLVGNLVKDLGLEVGELSSRGAQVVSKDNKLPLQLHINTGDLLLSEPLDREELCGSNEPCVLHFQVLMKNPLQILQVELQVRDINDNSPVFLEKEMVLEIPENSPVGAVFLLESATDLDVGTNAVKNYVISQSSHFHITIRVNPDGRKYPELVLDKALDYEEERELSLILTALDGGIPPKSGTALVRVEVIDINDNSPEFEHMFYEVKIPENSILGSLVITASAWDLDSGINGEVSYTFSHASEDIQKTFAINKNSGEIRLIEYLDFETTESYSIIVKATDRGGLFGKSTVRIQVIDVNDNSPEIAVSSFISPVPENSPDTLVMIFSIQDKDSGENSRMVCSIPEDLPFVLKSSIENYYHLETEGALDRESRAEYNITITVTDMGTPRLTTQHTITVQVSDVNDNAPSFTQTSYTLFVQENNSPALHIGTISATDSDSGSNAHITYSLLSTHDPQLALSSLISINADNGQLFALRALDYETLQTFEFRVDATDHGSPALSSQALVRVLVLDANDNAPFVLYPLQNASAPCTELLPSAAEPGYLVTKVVAVDRDSGQNAWLSFQLLKATEPGLFTVWAHNGEVRTSRLLSERDAPKHRLLVAVKDNGDPPRSASVTLHVLVVDGFSQPYLPLPEVGHDHAQDKDVLTLYLVIALASVSSLFLLFVLLFVGVRLCRRARAASLGGCSVPEGHFPGHLVDVSGAGTLSQSYQYEVCMMGGTGTNEFKFLKPISPNLPPQFPGKVMEESPTLYNSLGLFRDHN", "length": 845, "header": "tr|A0A9J7JD74-1|A0A9J7JD74_CRIGR Isoform 1 of Protocadherin beta-11-like isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC113833705 PE=4 SV=1 CANONICAL=A0A9J7JD74-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JD42", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD42" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JD42", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD42" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:113833705", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113833705", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JD74", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD74" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JD74", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD74" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "homophilic cell adhesion via plasma membrane adhesion molecules", "id": "GO:0007156", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007156", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JD74", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD74" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 462, "end_pos": 464, "annotation": "n_glycosylation_sequon" }, { "start_pos": 507, "end_pos": 509, "annotation": "n_glycosylation_sequon" }, { "start_pos": 611, "end_pos": 613, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JD74", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD74" }, { "id": "PS50268", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50268" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Cadherin", "eco_id": "ECO_0000259", "start_pos": 119, "end_pos": 177, "start_aa": "Leu", "end_aa": "Phe", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 462, "end_pos": 464 }, { "start_pos": 507, "end_pos": 509 }, { "start_pos": 611, "end_pos": 613 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7JD43-1", "uniprot_ac": "A0A9J7JD43", "uniprot_id": "A0A9J7JD43_CRIGR", "mass": { "chemical_mass": 70575.0, "monoisotopic_mass": 70575.0 }, "refseq": { "ac": "XP_003513476", "name": "guanylate-binding protein 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003513476" }, "gene_names": [ { "name": "LOC100762574", "type": "recommended", "evidence": [ { "id": "A0A9J7JD43", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD43" } ] }, { "name": "LOC100762574", "type": "synonym", "evidence": [ { "id": "XP_003513476", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003513476" } ] } ], "protein_names": [ { "name": "Guanylate-binding protein 1", "type": "synonym", "evidence": [ { "id": "A0A9J7JD43", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD43/entry#names_and_taxonomy" } ] }, { "name": "guanylate-binding protein 1", "type": "synonym", "evidence": [ { "id": "XP_003513476", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003513476" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003615923.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Apr 30, 2014 this sequence version replaced XP_003513476.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003513476", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003513476" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JD43", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD43" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100762574", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD43", "locus": {} } ], "crossref": [ { "id": "A0A9J7JD43", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JD43", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd01851", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01851", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd16269", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16269", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100762574", "url": "https://www.ncbi.nlm.nih.gov/gene/100762574", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR003191", "url": "https://www.ebi.ac.uk/interpro/entry/IPR003191", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR015894", "url": "https://www.ebi.ac.uk/interpro/entry/IPR015894", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR030386", "url": "https://www.ebi.ac.uk/interpro/entry/IPR030386", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036543", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036543", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037684", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037684", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100762574", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762574", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FESGRNK", "url": "https://omabrowser.org/oma/group/FESGRNK/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JD43", "url": "https://www.orthodb.org/?gene=A0A9J7JD43", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR10751", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10751", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02263", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02263", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02841", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02841", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003513476", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003513476", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JD43", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD43", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JD43-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD43-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKFRKPHVVAGGNKKGKTHAPGLSSKSREQVYTMAAEVHMPGPMCLIKNVKGQLIANQEALGILSDITQPVVVVAIVGLYRTGKSYLMNKLAGKQTGFSLGSTVQSHTKGIWMWCVPHPQKPGHTLVLLDTEGLGDVEKGDNQNDCWIFALAILLSSTFVYNSMGAINQQAMDQLHYVTELTDRIRSRSSPKQGEVKDSDEFVSFFPDFVWTLRDFSLELKVNGESISADEYLENSLKLIQGTSEKEKEFDLPRLCIRKFFPKKKCFVFERPVHGKKLGQLESLQDQDLDSDFMGQVAEFCSYVFSCSKVKTLSGGIKVNGARLKSLVVTYVNTICSGSLPCIENAVLALSQTENASAVQKAVANYDQQMTQKLQLPTESLQEMMNVHRASEKEAIKIFMKNSFKDINQVFLTELATKLERKQGEFYKKNLQASFDRCSALLQDIFGPLEEEVKKGVYYKQGGYCLLNQKIQILKKKYYEEPRKGLQAEEALQKFLQSKEDMIDSVLQTDKTLTEKEKEIEVKRVKAETASKIREEMQKKNDQLMKEKEKSYEERMKKLTEKMEKEQAQMRAEQQRIMEHKLQEQAQLLNKTFQLERTILENEIRHLNEKEASRRCVIS", "length": 619, "header": "tr|A0A9J7JD43-1|A0A9J7JD43_CRIGR Isoform 1 of Guanylate-binding protein 1 OS=Cricetulus griseus OX=10029 GN=LOC100762574 PE=3 SV=1 CANONICAL=A0A9J7JD43-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JD43-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD43/entry#A0A9J7JD43-1", "sequence": { "sequence": "MKFRKPHVVAGGNKKGKTHAPGLSSKSREQVYTMAAEVHMPGPMCLIKNVKGQLIANQEALGILSDITQPVVVVAIVGLYRTGKSYLMNKLAGKQTGFSLGSTVQSHTKGIWMWCVPHPQKPGHTLVLLDTEGLGDVEKGDNQNDCWIFALAILLSSTFVYNSMGAINQQAMDQLHYVTELTDRIRSRSSPKQGEVKDSDEFVSFFPDFVWTLRDFSLELKVNGESISADEYLENSLKLIQGTSEKEKEFDLPRLCIRKFFPKKKCFVFERPVHGKKLGQLESLQDQDLDSDFMGQVAEFCSYVFSCSKVKTLSGGIKVNGARLKSLVVTYVNTICSGSLPCIENAVLALSQTENASAVQKAVANYDQQMTQKLQLPTESLQEMMNVHRASEKEAIKIFMKNSFKDINQVFLTELATKLERKQGEFYKKNLQASFDRCSALLQDIFGPLEEEVKKGVYYKQGGYCLLNQKIQILKKKYYEEPRKGLQAEEALQKFLQSKEDMIDSVLQTDKTLTEKEKEIEVKRVKAETASKIREEMQKKNDQLMKEKEKSYEERMKKLTEKMEKEQAQMRAEQQRIMEHKLQEQAQLLNKTFQLERTILENEIRHLNEKEASRRCVIS", "length": 619, "header": "tr|A0A9J7JD43-1|A0A9J7JD43_CRIGR Isoform 1 of Guanylate-binding protein 1 OS=Cricetulus griseus OX=10029 GN=LOC100762574 PE=3 SV=1 CANONICAL=A0A9J7JD43-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JD43", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JD43" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027253906.1. 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MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027263737", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027263737" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JDH4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDH4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100766746", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDH4", "locus": {} } ], "crossref": [ { "id": "A0A9J7JDH4", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JDH4", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd06365", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06365", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd15283", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15283", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100766746", "url": "https://www.ncbi.nlm.nih.gov/gene/100766746", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000068", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000068", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR000337", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000337", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001828", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001828", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004073", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004073", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011500", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011500", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017978", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017978", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028082", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028082", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038550", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038550", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100766746", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100766746", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JDH4", "url": "https://www.orthodb.org/?gene=A0A9J7JDH4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24061", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24061", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24061:SF409", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24061:SF409", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00003", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00003", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01094", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01094", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07562", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07562", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027263737", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027263737", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JDH4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDH4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JDH4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDH4-1", "database": "UniProtKB", 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"MLFLTFVFLVLRLSFLFWSLTGTRCFLRRNDIDSMGQDKDNDCLFSIYTKYGHMKNEYFPRNLDKKLTNKDIHLILSLYFALENINKDPHILPNISLLVKIECNLLDDWRMNSLFSRIDEFLPNYYCINQRRYLIVLTGPTWLSSAMLGPLLYITNRPELYYGPFHPILGSREQFPHLYQMAPKDTALALAMVSLVVYFRWNWVGAIISDDDLGLQFLFELRRETQRNSVCLAFVHIIVEDKILFQKNVNTFYNEIITSSAKVVIIYGDKDSHLQLNLRLYRLVNVQRIWVTTSQWDMITHDDRLLFNSFYGTFTFLLHFSELSGFTAFILAPDPSKYISTWILSELWWIYFNCSPNSFNSMKIKNYSKGKLYNWLFMQKMEMSVSSTGYVLYNTVHAVAHALHEMLLQEVHTWPKYPGEILEFDSWQMVQFLKNIQFMNPVGNQVNMNQKENQDMKYDIHYTMDFLSHIGFKVEVGIFSKHLLHTQQFYVSEEIIKWNIDLRQIQPSICSVPCNPGFRKSPHQGKAVCCFDCTPCPENEISNMTGMDQCVKCPDDYYANPGGNHCLKKVVTFLGYEDLLGMSLACFAVCFSILTAGVLGVFLKYKDTPTVKANNRDLSYVLLISLIFCFLCCLLFIGKPNIITCLMQQTIFAVVFTVAASTVLAKTITVVLAFKVTTPGRRIRRLLLSGAPNFIIPICTMIQLILCGIWLGISPPFVEADVYVEKGHILIICNKGSITAFYCVLGYLGSIALGSFTLAFLARNLPDTFNEAKYLTFSMLVFCSVWITFLPVYHSTKGKAMVGVEVFCILASSAGLLLCIFAPKCFIILLRPERNSFQNFRNMHYKIENTH", "length": 851, "header": "tr|A0A9J7JDH4-1|A0A9J7JDH4_CRIGR Isoform 1 of Vomeronasal type-2 receptor 116-like OS=Cricetulus griseus OX=10029 GN=LOC100766746 PE=4 SV=1 CANONICAL=A0A9J7JDH4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JDH4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDH4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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"https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JDH4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDH4" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 353, "end_pos": 355, "annotation": "n_glycosylation_sequon" }, { "start_pos": 366, "end_pos": 368, "annotation": "n_glycosylation_sequon" }, { "start_pos": 543, "end_pos": 545, "annotation": "n_glycosylation_sequon" }, { "start_pos": 94, "end_pos": 96, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JDH4", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDH4" }, { "id": "PS50259", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50259" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "G-protein coupled receptors family 3 profile", "eco_id": "ECO_0000259", "start_pos": 580, "end_pos": 844, "start_aa": "Leu", "end_aa": "His", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 353, "end_pos": 355 }, { "start_pos": 366, "end_pos": 368 }, { "start_pos": 543, "end_pos": 545 }, { "start_pos": 94, "end_pos": 96 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7JDI3-1", "uniprot_ac": "A0A9J7JDI3", "uniprot_id": "A0A9J7JDI3_CRIGR", "mass": { "chemical_mass": 59614.0, "monoisotopic_mass": 59614.0 }, "refseq": { "ac": "XP_027254525", "name": "solute carrier family 7 member 13-like isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027254525" }, "gene_names": [ { "name": "LOC100750364", "type": "recommended", "evidence": [ { "id": "A0A9J7JDI3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDI3" } ] }, { "name": "LOC100750364", "type": "synonym", "evidence": [ { "id": "XP_027254525", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027254525" } ] } ], "protein_names": [ { "name": "Solute carrier family 7 member 13-like isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7JDI3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDI3/entry#names_and_taxonomy" } ] }, { "name": "solute carrier family 7 member 13-like isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027254525", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027254525" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 11% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027254525.1. 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"MFSEMNRRTLAFRGGGLVTGGGGGGGGRRPTNNNAGGRPLLGLRGRIRDSPRAARAAAANGRGADEEMAIGGPGAPRLGGLRRAAAAAAAAPLPAAAAEDAKELLLPQDAGGPASLGGGAGGPLLAERNRRTLAFRGGGAGGLGNNGSSRGRRGTSAWPLRHFNGRGPAAVDLELDALEGKELMQDGASLSDSTEEEEEGASPGDGSGAEGGSCSSSRRSGGDGGDEAEGSGVGAGDGETVQHFPLARPKSLMQKLQSSFQTSWLKDFPWLRYSKDTGLMFCGWCQKTPEDGGSVDLPQLGRDELSRGTRNYKKTLLLRHHVSTEHKLHEANAQGSEIPSEEGYCDFNNRPNENSYCYQLLRQLDEQRKKDILCDVSIVVSGKIFKAHKNILVAGSRFFKTLYCVSNKESPNQNNTTHLDIAAVQGFSDILDFLYSGNLVLSSQNVLEVMTVASYLQMSEVVQTCQSFIDEALYIGMKSEAPESVIVDYNNRKRVIRDGLTSRDQKIARFWATQNLTNLASNIKIENDGCNVNEGQIESYQMNDSDWVQHPSSELLENESQGKTKVFIWNNVSSQETGKTRRKNQTTKRFVYNIPPNNETSLEDCSVMQPPVAYPEENTALLIKEEPDLDGTLLSGPDGDRTVNTNLLAEACSGQDAGDAGASHDFKYGMISGTSSDFKYGLLPSTSNDFKYGLLPGASNDFKYGLLPDSWPKQETWENGDSSLIMNKLKCPHCSYVAKYRRTLKRHLLIHTGVRSFSCDICGKLFTRREHVKRHSLVHKKDKKYKCMVCKKIFMLAASVGIRHGSRRYGVCMDCADKSQPAGQEGVDQGQDAEFPRDEECEENEGGEPEDELAENGEDQNGAPRWDESGDVCMSLDD", "length": 878, "header": "tr|A0A9J7JDP4-1|A0A9J7JDP4_CRIGR Isoform 1 of Zinc finger and BTB domain-containing protein 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"MFSEMNRRTLAFRGGGLVTGGGGGGGGRRPTNNNAGGRPLLGLRGRIRDSPRAARAAAANGRGADEEMAIGGPGAPRLGGLRRAAAAAAAAPLPAAAAEDAKELLLPQDAGGPASLGGGAGGPLLAERNRRTLAFRGGGAGGLGNNGSSRGRRGTSAWPLRHFNGRGPAAVDLELDALEGKELMQDGASLSDSTEEEEEGASPGDGSGAEGGSCSSSRRSGGDGGDEAEGSGVGAGDGETVQHFPLARPKSLMQKLQSSFQTSWLKDFPWLRYSKDTGLMFCGWCQKTPEDGGSVDLPQLGRDELSRGTRNYKKTLLLRHHVSTEHKLHEANAQGSEIPSEEGYCDFNNRPNENSYCYQLLRQLDEQRKKDILCDVSIVVSGKIFKAHKNILVAGSRFFKTLYCVSNKESPNQNNTTHLDIAAVQGFSDILDFLYSGNLVLSSQNVLEVMTVASYLQMSEVVQTCQSFIDEALYIGMKSEAPESVIVDYNNRKRVIRDGLTSRDQKIARFWATQNLTNLASNIKIENDGCNVNEGQIESYQMNDSDWVQHPSSELLENESQGKTKVFIWNNVSSQETGKTRRKNQTTKRFVYNIPPNNETSLEDCSVMQPPVAYPEENTALLIKEEPDLDGTLLSGPDGDRTVNTNLLAEACSGQDAGDAGASHDFKYGMISGTSSDFKYGLLPSTSNDFKYGLLPGASNDFKYGLLPDSWPKQETWENGDSSLIMNKLKCPHCSYVAKYRRTLKRHLLIHTGVRSFSCDICGKLFTRREHVKRHSLVHKKDKKYKCMVCKKIFMLAASVGIRHGSRRYGVCMDCADKSQPAGQEGVDQGQDAEFPRDEECEENEGGEPEDELAENGEDQNGAPRWDESGDVCMSLDD", "length": 878, "header": "tr|A0A9J7JDP4-1|A0A9J7JDP4_CRIGR Isoform 1 of Zinc finger and BTB domain-containing protein 10 isoform X2 OS=Cricetulus griseus OX=10029 GN=Zbtb10 PE=4 SV=1 CANONICAL=A0A9J7JDP4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JDP4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDP4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JDP4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDP4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100752837", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752837", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JDP4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDP4" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JDP4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDP4" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JDP4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDP4" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JDP4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDP4" } ], "pmid": "" }, { "name": "DNA-binding transcription factor activity, RNA polymerase II-specific", "id": "GO:0000981", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000981", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JDP4", "url": 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"database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDT7" } ] }, { "name": "LOC100771680", "type": "synonym", "evidence": [ { "id": "XP_027254768", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027254768" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: olfactory receptor 2A12", "type": "synonym", "evidence": [ { "id": "XP_027254768", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027254768" }, { "id": "A0A9J7JDT7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JDT7/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 1 indel internal stop codons :: corrected 1 genomic stop codon ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027258748", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027258748" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JE89", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JE89" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tmem244", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JE89", "locus": {} } ], "crossref": [ { "id": "A0A9J7JE89", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JE89", "database": "AlphaFoldDB", "categories": [] }, { "id": "103163001", "url": "https://www.ncbi.nlm.nih.gov/gene/103163001", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019185", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019185", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:103163001", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:103163001", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JE89", "url": "https://www.orthodb.org/?gene=A0A9J7JE89", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PF09801", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09801", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027258748", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027258748", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JE89", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JE89", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JE89-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JE89-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MENRELTRVDHIEPLVVDVMVAIDAVKDLIDPKGTQCMYFLLAGIANSLLIAFALSGATRCFLVPEVLSSRVHNPLLCLPLIKIPQEYLKLPETVVVQNLLMCGILFYTVYYLSLSMCCLTLKVWELDVLAPFDFKTHPSWLNTNYKILLVSTEVTYFVCGLLFAQIVEEWVWDYAISVTILHVIITSAVTLEIPLTSHWWAALGTGMACVDPLMSKNNVK", "length": 221, "header": "tr|A0A9J7JE89-1|A0A9J7JE89_CRIGR Isoform 1 of Transmembrane protein 244 OS=Cricetulus griseus OX=10029 GN=Tmem244 PE=4 SV=1 CANONICAL=A0A9J7JE89-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JE89-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JE89/entry#A0A9J7JE89-1", "sequence": { "sequence": "MENRELTRVDHIEPLVVDVMVAIDAVKDLIDPKGTQCMYFLLAGIANSLLIAFALSGATRCFLVPEVLSSRVHNPLLCLPLIKIPQEYLKLPETVVVQNLLMCGILFYTVYYLSLSMCCLTLKVWELDVLAPFDFKTHPSWLNTNYKILLVSTEVTYFVCGLLFAQIVEEWVWDYAISVTILHVIITSAVTLEIPLTSHWWAALGTGMACVDPLMSKNNVK", "length": 221, "header": "tr|A0A9J7JE89-1|A0A9J7JE89_CRIGR Isoform 1 of Transmembrane protein 244 OS=Cricetulus griseus OX=10029 GN=Tmem244 PE=4 SV=1 CANONICAL=A0A9J7JE89-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023276806.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027250404", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250404" } ] }, { "annotation": "Endoplasmic reticulum translocase required to remove mitochondrial transmembrane proteins mistargeted to the endoplasmic reticulum. Acts as a dislocase that mediates the ATP-dependent extraction of mislocalized mitochondrial transmembrane proteins from the endoplasmic reticulum membrane. Specifically binds mitochondrial tail-anchored transmembrane proteins: has an atypically large substrate-binding pocket that recognizes and binds moderately hydrophobic transmembranes with short hydrophilic lumenal domains.", "evidence": [ { "database": "UniProtKB", "id": "A0A061IQD4", "url": "https://www.uniprot.org/uniprotkb/A0A061IQD4#function" }, { "database": "UniProtKB", "id": "ARBA00059755", "url": "https://www.uniprot.org/uniprotkb/ARBA00059755#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A061IQD4", "url": "https://www.uniprot.org/uniprotkb/A0A061IQD4" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Atp13a1", "url": "https://www.uniprot.org/uniprotkb/A0A061IQD4", "locus": {} } ], "crossref": [ { "id": "cd04408", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd04408", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd07543", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07543", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd20816", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd20816", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100758734", "url": "https://www.ncbi.nlm.nih.gov/gene/100758734", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "100762605", "url": "https://www.ncbi.nlm.nih.gov/gene/100762605", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000198", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000198", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001757", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001757", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002219", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002219", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006544", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006544", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008250", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008250", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008936", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008936", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018303", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018303", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023214", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023214", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023298", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023298", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR023299", "url": "https://www.ebi.ac.uk/interpro/entry/IPR023299", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027267", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027267", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR031160", "url": "https://www.ebi.ac.uk/interpro/entry/IPR031160", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036412", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036412", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR044492", "url": "https://www.ebi.ac.uk/interpro/entry/IPR044492", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR046349", "url": "https://www.ebi.ac.uk/interpro/entry/IPR046349", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047820", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047820", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051025", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051025", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR054713", "url": "https://www.ebi.ac.uk/interpro/entry/IPR054713", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057255", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057255", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR059000", "url": "https://www.ebi.ac.uk/interpro/entry/IPR059000", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100758734", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758734", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "cge:100762605", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762605", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "PVKYYRH", "url": "https://omabrowser.org/oma/group/PVKYYRH/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A061IQD4", "url": "https://www.orthodb.org/?gene=A0A061IQD4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3H461", "url": "https://www.orthodb.org/?gene=G3H461", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR15228", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15228", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR15228:SF16", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR15228:SF16", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45630", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45630", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45630:SF7", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45630:SF7", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00122", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00122", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF00620", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00620", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13246", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13246", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22699", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22699", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23143", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23143", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027250404", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027250404", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "66168", "url": "https://www.rhea-db.org/rhea/66168", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A061IQD4", "url": "https://www.uniprot.org/uniprotkb/A0A061IQD4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A061IQD4-1", "url": "https://www.uniprot.org/uniprotkb/A0A061IQD4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3H461", "url": "https://www.uniprot.org/uniprotkb/G3H461", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3H461-1", "url": "https://www.uniprot.org/uniprotkb/G3H461-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAVGNAVPCGTRPGAAGGNGPPQPGRRPRPLLAAGPALIASGDELVAAVWPYRRLALVRRLTVLPFAGLLYPAWLGAAASGCWGWGSSWTQVPEAALLALATICLAHALTVLSGHWSVHAHCALTCTPEYDPSRATFVKVVPTPNNGSTELVALHRDKGEDGLEVLSFEFQKIKYSYDALEKKQFLPVAFPVGNAFSYYQSNRGFQEDSEIRAAEKKFGSNKAEMVVPDFSELFKERATAPFFVFQVFCVGLWCLDEYWYYSVFTLSMLVAFEASLVQQQMRNMSEIRKMGNKPHMIQVYRSRKWRPVASDEIVPGDIVSIGRSPQENLVPCDVLLLRGRCIVDEAMLTGESVPQMKEPIEDLSPDRVLDLQADARLHVIFGGTKVVQHMPPQKATSGLKSVDNGCVAYVLRTGFNTSQGKLLRTILFGVKRVTANNLETFIFILFLLVFAIAAAAYVWVEGTKDPSRNRYKLFLECTLILTSVVPPELPIELSLAVNTSLIALAKLYMYCTEPFRIPFAGKVEVCCFDKTGTLTSDSLVVRGVAGLRDGKEVTPVSSIPIETHRALASCHSLMQLDDGTLVGDPLEKAMLTAVDWTLTKDEKVFPRSIKTQGLKIHQRFHFASALKRMSVLASYEKLGSTDLCYIAAVKGAPETLHSMFSQCPPDYHHIHTEISREGARVLALGYKELGHLTHQQAREVKREALECSLKFVGFIVVSCPLKADSKAVIREIQNASHRVVMITGDNPLTACHVAQELHFIDKAHTLILHPPSEKGRPCEWRSIDSSIVLPLTLGSPKALALEHALCLTGDGLAHLQAVDPQQLLRLIPHVQVFARVAPKQKEFVITSLKELGYVTLMCGDGTNDVGALKHADVGVALLANAPERIVERRRRPRDNQVLSNSGPRVSSRSTKQRSALLSPEEPPASHRDRLNQVLRDLEDESTPIVKLGDASIAAPFTSKLSSIQCICHVIKQGRCTLVTTLQMFKILALNALILAYSQSVLYLEGVKFSDFQATLQGLLLAGCFLFISRSKPLKTLSRERPLPNIFNLYTILTVMLQFSVHFLSLVYLYQEAQARSPEKQEQFVDLYKEFEPSLVNSTVYIMAMAMQMATFAINYKGPPFMESLPENKPLVWSLVVSLLAIIGLLLGSSPDFNSQFGLVDIPVEFKLVIGQVLALDFCLALLADRVLQFFLGTPKLKVPS", "length": 1201, "header": "tr|A0A061IQD4-1|A0A061IQD4_CRIGR Isoform 1 of Endoplasmic reticulum transmembrane helix translocase OS=Cricetulus griseus OX=10029 GN=Atp13a1 PE=3 SV=1 CANONICAL=A0A061IQD4-1" }, "isoforms": [ { "isoform_ac": "A0A061IQD4-1", "url": "https://www.uniprot.org/uniprotkb/A0A061IQD4/entry#A0A061IQD4-1", "sequence": { "sequence": "MAAVGNAVPCGTRPGAAGGNGPPQPGRRPRPLLAAGPALIASGDELVAAVWPYRRLALVRRLTVLPFAGLLYPAWLGAAASGCWGWGSSWTQVPEAALLALATICLAHALTVLSGHWSVHAHCALTCTPEYDPSRATFVKVVPTPNNGSTELVALHRDKGEDGLEVLSFEFQKIKYSYDALEKKQFLPVAFPVGNAFSYYQSNRGFQEDSEIRAAEKKFGSNKAEMVVPDFSELFKERATAPFFVFQVFCVGLWCLDEYWYYSVFTLSMLVAFEASLVQQQMRNMSEIRKMGNKPHMIQVYRSRKWRPVASDEIVPGDIVSIGRSPQENLVPCDVLLLRGRCIVDEAMLTGESVPQMKEPIEDLSPDRVLDLQADARLHVIFGGTKVVQHMPPQKATSGLKSVDNGCVAYVLRTGFNTSQGKLLRTILFGVKRVTANNLETFIFILFLLVFAIAAAAYVWVEGTKDPSRNRYKLFLECTLILTSVVPPELPIELSLAVNTSLIALAKLYMYCTEPFRIPFAGKVEVCCFDKTGTLTSDSLVVRGVAGLRDGKEVTPVSSIPIETHRALASCHSLMQLDDGTLVGDPLEKAMLTAVDWTLTKDEKVFPRSIKTQGLKIHQRFHFASALKRMSVLASYEKLGSTDLCYIAAVKGAPETLHSMFSQCPPDYHHIHTEISREGARVLALGYKELGHLTHQQAREVKREALECSLKFVGFIVVSCPLKADSKAVIREIQNASHRVVMITGDNPLTACHVAQELHFIDKAHTLILHPPSEKGRPCEWRSIDSSIVLPLTLGSPKALALEHALCLTGDGLAHLQAVDPQQLLRLIPHVQVFARVAPKQKEFVITSLKELGYVTLMCGDGTNDVGALKHADVGVALLANAPERIVERRRRPRDNQVLSNSGPRVSSRSTKQRSALLSPEEPPASHRDRLNQVLRDLEDESTPIVKLGDASIAAPFTSKLSSIQCICHVIKQGRCTLVTTLQMFKILALNALILAYSQSVLYLEGVKFSDFQATLQGLLLAGCFLFISRSKPLKTLSRERPLPNIFNLYTILTVMLQFSVHFLSLVYLYQEAQARSPEKQEQFVDLYKEFEPSLVNSTVYIMAMAMQMATFAINYKGPPFMESLPENKPLVWSLVVSLLAIIGLLLGSSPDFNSQFGLVDIPVEFKLVIGQVLALDFCLALLADRVLQFFLGTPKLKVPS", "length": 1201, "header": "tr|A0A061IQD4-1|A0A061IQD4_CRIGR Isoform 1 of Endoplasmic reticulum transmembrane helix translocase OS=Cricetulus griseus OX=10029 GN=Atp13a1 PE=3 SV=1 CANONICAL=A0A061IQD4-1" }, "locus": {} }, { "isoform_ac": "G3H461-1", "url": "https://www.uniprot.org/uniprotkb/A0A061IQD4/entry#G3H461-1", "sequence": { "sequence": "MDTTETEVTPTPEGRKRYSDIFQSLDNLEISLGNVAFDPLAGDLVLREDLEPDKTATATVVTEESSEASCWSDASSEGPVPLTEEELDLRLIRTKGGVDAALEYAKAWSRYAKELLAWTDKRANYELEFAKSVMKIAEAGKVSILQQSQMPLQYIYTLFLEHDLSLGTLAMETLAQQKRDYYQPLAAKRVEIEKWRKEFKEQWLKEQKRMNEAVQVLRRARLQYIQRKEDLRARSQGSPEDPPPQAAPGSSKQQERRRRSREEAQAKAQEAEALYQTCVREANMRHQDLETTKQRIVSHVRKLVFQGDEVLRRVTLGLFELRGAQAERGPRAFSALAECCAPFEPGQRYREFVQTLQPGAPPPPSPAFCFQEFTPVLHSSPQDTKKKFSGPPQARLEEGSSEPGPWEDTSLGSQGMTGPTPGSDVDSVGGGNESQSLDSPTSSPGAGTRRLVKASSTGTESSDDFEERDPDLGDGMENGLGSPFRKWTLSTAAQTHRLRRLRGPAKCRECEAFMVSGTECEECFLTCHKRCLETLLILCGHQRLPARMPLFGVDFLQLPRDFPEEVPFVVTRCTAEIEHRALGLQGIYRVSGSRVRVERLCQAFENGRALVELSGNSPHDITSVLKRFLQELTDPVVPFHFYDAFISLAKTLHADPGDDPGTPSPSPEIIRSLKTLLVQLPDSNYSTLRHLVAHLFRVAARFEENKMSANNLGIVFGPTLLRPPDGLRAPSASPMACLLDSGHQAQLVEFLIVNYEQIFGMDELPLASEPLTQDIGLAPALLESSPQHPALLLAQDTQPLTIASDSIPDPRHHSALEKYPKVTPPEIATLQRDEREEKEVENTRDGAGEGSSHNPEDLLLGTQSRGHFSRQPVKYSRGGVRPVTHQLSSLALVAYKLCEETPVTVSTVHGGSLRGRSLGPASASSEGSPLRRNPLPKHFEITQETARLLSKLDSETVSRATSCADTEPEESEEHL", "length": 975, "header": "tr|G3H461-1|A0A061IQD4_CRIGR Computationally mapped isoform of Endoplasmic reticulum transmembrane helix translocase OS=Cricetulus griseus OX=10029 GN=Atp13a1 PE=3 SV=1 CANONICAL=A0A061IQD4-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3H461", "url": "https://www.uniprot.org/uniprotkb/G3H461" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3H461", "url": "https://www.uniprot.org/uniprotkb/G3H461" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100758734", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758734", "resource": "KEGG Pathway" }, { "id": "cge:100762605", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762605", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q2U6L6-1", "protein_name": "GEM interacting protein", "gene_name": "GMIP", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MNGLGSRDDARVADGFPAGFLPPEHNSHLGIPAASWAPSHCPTPEHRAGEVLRVTQHLKSIDGKFQCLRELFQKGEDFSGPVKAKLSDLLHSIFSFLNTYPAVTGDAIHLAIATLIANINGLDHQERAPENKKRYSEIFRSLDAIEISIGNAAVDMFIGDADGTGDAELSTEREIIVPSEDLSKSKSSLERQMQGDLTVEEADEMLIKCEGGIDAALEYAKMWCKYVKELLSWIEKRLNYETEFAKGIMKIAESGRNAIIHQSNMPLRMLYVMVLENDIKIGNAASETVGLLQQKEFYQPLSAKKNEIEKWRKEFKDQWTKEQKRMNESLSLLRKARLQYIQRCEEMEKAKQLSAKAEDEYQNSAIISPSSAIKHLEKRRRSCEEAQAKVQEAEALYRMCIGDANFRRQELEKVRARIVSHIRKLIYQGDEVLTWVTLRMFKQRQTQSEQIPVGYQHLSEVCKPYRVGEKYLEFIQALQKKDIPMEHFEFEPLSSGGQRSPPSNKKKTPLHYTGCSKDGSTPEDTPRRQFSPNGEQSVNKSLCSDTESLSGSCESRSLDSPSSSPGNSTRKLLKASSTGTMSSSDDFEERDSLQTSENENGTSQQQFRNALLSSAAQTHRLRKLRGPTKCRECDTFMVNGFECEECYLTCHKKCLENLLITCGHKKLPNRVPLFGIDFTQVPRDFPEEVPFIVVKCTSEIEARALGVQGIYRISGSKARVEKLCQAFENGRSLVELSEHSPHDITGVLKHFLKELSGPILLYQLYDNLIALAKELQKAGEEKVDCTSFPSDPIQSMKDLLSKLPGSNYNTLRHLIAHLYRVAEKYEENKMSPNNLGIVFGPTLIRPGSGSDVSMSCLVDSGYQAQIVEFLIQNYERVFGMEDLPSSLSLGCENPLQEASTEKDEEHQSPNTAQNVTLENPSSKHSSSVDDVSDISSSGEAMDGFMLESAHSSEGGEVNASVGSELEDAEEKADSDSEPVFGTQPRGHFSRQPVKYVRAQPKTRPNIPKPSSLPLRATTSPSMATDSGAEGSPIDSTCMGKEILEERTRSRNSSPDMSALRHKGKQHKHFQITEETARIISKFKADEVSAAPELSSGEKAVKFGPEIIPEKIL", "length": 1112 }, "evidence": [ { "id": "A0A061IQD4", "url": "https://omabrowser.org/oma/group/A0A061IQD4/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0A8W4FPG2-1", "protein_name": "GEM interacting protein", "gene_name": "GMIP", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MWQGLPPAPENRKRYSDIFRSLDNLEISLGNVTLEMLAADPVLSAGDPETDKTPTATLSNETSSWSGPSPEDPAPLTGEELDLRLIRTKGGVDAALEYAKTWSRYAKELLAWTEKRASHELEFAKTIMKIAEAGKVSIHQQSHMPLQYIYTLFLEHDLSLGALAMETVAQQKRDYYQPLAAKRTEIEKWRKEFKEQWMKEQKRMNEAVQALRRAQLQYAQRSEDLRVRSQVSPEDPAPQASPALNKQQERRRRSREEAQAKAQEAEALYQACVREANARQQDLEAAKQRIVSHVRKLVLQGDEVLRRVTLGLFRLREAQAERGPRAFAALAECCAPFEPGQRYQEFVRTMQPDAPPPPPPAFSFQEFSYSSPLDTRKKLSDPSPPRLDESGADPGPWEDTGTGWQGTLGSDVDSLGGGSESRSLDSPTSSPGSGTRRLVKVSSIGTESSDDFEERDPDLGDGLENGPGTPFKKWTLSNAAQTHRLRRLRGPAKCRECEAFMVSGTECEECFLTCHKRCLETLLILCGHRRLPARTPIFGVNFLQLPRDFPEEVPFVITRCTAEIEQRALGVQGIYRVSGSRVRVERLCQAFENGRALVDLSGNSPHDISSVLKRFLQELTDPVVPFHLYDAFISLAKTLHADPGRDPGTPSPSPEIICSLKTLLVQLPDSNYNTLRHLVAHLFRVAARFEENKMSANNLGIVFGPTLLRPPDGPGAACAGPVTCLLDSGHQAQLIEFLIVHYEKIFGIDELPLTTEPLPRDPSPPPGALPTNTQPSYPQLVLDPLPLSLTSDPNPAPMPLSALEEHPEATLPEIPTLQCDQGEEVAKDTKDEGGEVSSQGLQDSPLGTQSRGHFSRQPVKYPRGGVRPVTHQLSGLALVASKLCEETPVTSVPQGSLRRRGPGPTATSCEGSPLRRAPLPKHFEITQETARLLSKLHSESVPKATCCPDPQPEEAEDHL", "length": 959 }, "evidence": [ { "id": "A0A061IQD4", "url": "https://omabrowser.org/oma/group/A0A061IQD4/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "D3ZA46-1", "protein_name": "Gem-interacting protein", "gene_name": "Gmip", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MDSTETELTPAPEGRKRYSDIFQSLDNLEISLGNVTFDPLAGDLVLREDLEPDKTDTAAVETEENSEASWSNPSPEGPAPLTEEELDLRLIRTKGGVDAALEYAKAWSRYAKELLAWTDKRANYELEFAKNIMKIAEAGKGSILQQSQMPLQYIYTLFLEHDHSLGALAIDTVAQQKRDYYQPLAAKRMEIEKWRKEFKEQWLKEQKRMSEAEQALRRSQLQYIQRREDLRARTQGSPEDPPLQASPGSNKQQERRRRSREEAQAKAHEAEALYQACVREANTRQQDLETTKRRIVSHVRKLVLQGDEVLRRVTLGLFELRGAQAERGPRSFSALAECCVPFEPGQRYQEFVRSLQPGAPPPPSPAFCFQEFAPVVHSFPQDTKKKFSGPLPTRLEEGPSEPGPWEVASLGSQGIPGSDVDSVGGGSESRSLDSPTSSPGAGARRLVKASSTGTESSDDFEERDPDLGDGMENGTGSPFRKWTLSTAAQTHRLRRLRGPAKCRECEAFMVSGTECEECFLTCHKRCLETLLILCGHQRLPARMPLFGVDFLQLPRDFPEEVPFVVTRCTAEIEHRALGLQGIYRVSGSRVRVERLCQAFENGRALVELSGNSPHDITSVLKRFLQELTDPVVPFHFYDAFISLAKTLHADPGDDPGTPSPSPEIIRSLKTLLVQLPDSNYSTLRHLVAHLFRVAARFKENKMSANNLGIVFGPTLLRPPDGPGATSASPVACLLDSGHQAQLVEFLIVHYEQIFGMDELPLTSEPLTQDPALAPALLESSPQHPALLVAQDSQPLTIASDSSPDPKQHSALEKCPKVAPPELTALQSNRKEEEEEDTRDGAGDGSSHSPEDLLLVAQSRGHFSRQPVKYSRGGVRPVTHQLSSLALVASKLCEETPITVSAVHRGSLRARGLGPAAASPEGGTLRRNPLPKHFEITQETARLLSKLDSEAVSRTSCCADPEPEESEEHL", "length": 969 }, "evidence": [ { "id": "A0A061IQD4", "url": "https://omabrowser.org/oma/group/A0A061IQD4/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6PGG2-1", "protein_name": "GEM-interacting protein", "gene_name": "Gmip", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": 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], "pmid": "" }, { "name": "membrane protein dislocase activity", "id": "GO:0140567", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0140567", "evidence": [ { "database": "UniProtKB", "id": "A0A061IQD4", "url": "https://www.uniprot.org/uniprotkb/A0A061IQD4" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 4, "go_terms": [ { "name": "nucleoplasm", "id": "GO:0005654", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005654", "evidence": [ { "database": "UniProtKB", "id": "A0A061IQD4", "url": "https://www.uniprot.org/uniprotkb/A0A061IQD4" } ], "pmid": "" }, { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A061IQD4", "url": "https://www.uniprot.org/uniprotkb/A0A061IQD4" } ], "pmid": "" }, { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A061IQD4", "url": 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{ "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A3L7HIE2-1", "uniprot_ac": "A0A3L7HIE2", "uniprot_id": "A0A3L7HIE2_CRIGR", "mass": { "chemical_mass": 35084.0, "monoisotopic_mass": 35084.0 }, "refseq": { "ac": "XP_007640834", "name": "3'(2'),5'-bisphosphate nucleotidase 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007640834" }, "gene_names": [ { "name": "Bpnt1", "type": "recommended", "evidence": [ { "id": "A0A3L7HIE2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HIE2" } ] }, { "name": "Bpnt1", "type": "synonym", 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mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613581.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007640834", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007640834" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A3L7HIE2", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HIE2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Bpnt1", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HIE2", "locus": {} } ], "crossref": [ { "id": "cd01640", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01640", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100774047", "url": "https://www.ncbi.nlm.nih.gov/gene/100774047", "database": "GeneID", "categories": [ "Genome 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"categories": [ "Protein Classification" ] }, { "id": "PTHR43028", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43028", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR43028:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR43028:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00459", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00459", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007640834", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007640834", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "10040", "url": "https://www.rhea-db.org/rhea/10040", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "15553", "url": "https://www.rhea-db.org/rhea/15553", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "70319", "url": "https://www.rhea-db.org/rhea/70319", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "77639", "url": "https://www.rhea-db.org/rhea/77639", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "77643", "url": "https://www.rhea-db.org/rhea/77643", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A3L7HIE2", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HIE2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A3L7HIE2-1", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HIE2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3GRE0", "url": "https://www.uniprot.org/uniprotkb/G3GRE0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3GRE0-1", "url": "https://www.uniprot.org/uniprotkb/G3GRE0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASSHTVLMRLVASAYSIAQKAGTIVRCVIAEGDLGIVQKTSATDLQTKADRLVQMSICSSLARKFPKLTIIGEEDLPPGEVDQELIEDGQWEEILKQPCPSQYSAIKEEDLVVWVDPLDGTKEYTEGLLDNVTVLIGIAYEGKAIAGIINQPYYNYQSNEKQKLREQRKEAKAGPDAVLGRTIWGVLGLGAFGFQLKEAPAGKHIITTTRSHSNKLVTDCVSAMNPDNVLRVGGAGNKIIQLIEGKASAYVFASPGCKKWDTCAPEVILHAVGGKLTDIHGNALQYNKEVKHMNSAGVLAALRNYEYYASRVPESVKNALTP", "length": 323, "header": "tr|A0A3L7HIE2-1|A0A3L7HIE2_CRIGR Isoform 1 of 3'(2'),5'-bisphosphate nucleotidase 1 OS=Cricetulus griseus OX=10029 GN=Bpnt1 PE=3 SV=1 CANONICAL=A0A3L7HIE2-1" }, "isoforms": [ { "isoform_ac": "A0A3L7HIE2-1", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HIE2/entry#A0A3L7HIE2-1", "sequence": { "sequence": "MASSHTVLMRLVASAYSIAQKAGTIVRCVIAEGDLGIVQKTSATDLQTKADRLVQMSICSSLARKFPKLTIIGEEDLPPGEVDQELIEDGQWEEILKQPCPSQYSAIKEEDLVVWVDPLDGTKEYTEGLLDNVTVLIGIAYEGKAIAGIINQPYYNYQSNEKQKLREQRKEAKAGPDAVLGRTIWGVLGLGAFGFQLKEAPAGKHIITTTRSHSNKLVTDCVSAMNPDNVLRVGGAGNKIIQLIEGKASAYVFASPGCKKWDTCAPEVILHAVGGKLTDIHGNALQYNKEVKHMNSAGVLAALRNYEYYASRVPESVKNALTP", "length": 323, "header": "tr|A0A3L7HIE2-1|A0A3L7HIE2_CRIGR Isoform 1 of 3'(2'),5'-bisphosphate nucleotidase 1 OS=Cricetulus griseus OX=10029 GN=Bpnt1 PE=3 SV=1 CANONICAL=A0A3L7HIE2-1" }, "locus": {} }, { "isoform_ac": "G3GRE0-1", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HIE2/entry#G3GRE0-1", "sequence": { "sequence": "MASSHTVLMRLVASAYSIAQKAGTIVRCVIAEGDLGIVQKTSATDLQTKADRLVQMSICSSLARKFPKLTIIGEEDLPPGEVDQELIEDGQWEEILKQPCPSQYSAIKEEDLVVWVDPLDGTKEYTEGLLDNVTVLIGIAYEGKAIAGIINQPYYNYQAGPDAVLGRTIWGVLGLGAFGFQLKEAPAGKHIITTTRSHSNKLVTDCVSAMNPDNVLRVGGAGNKIIQLIEGKASAYVFASPGCKKWDTCAPEVILHAVGGKLTDIHGNALQYNKEVKHMNSAGVLAALRNYEYYASRVPESVKNALTP", "length": 308, "header": "tr|G3GRE0-1|A0A3L7HIE2_CRIGR Computationally mapped isoform of 3'(2'),5'-bisphosphate nucleotidase 1 OS=Cricetulus griseus OX=10029 GN=Bpnt1 PE=3 SV=1 CANONICAL=A0A3L7HIE2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [ "enzyme" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3GRE0", "url": "https://www.uniprot.org/uniprotkb/G3GRE0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3GRE0", "url": "https://www.uniprot.org/uniprotkb/G3GRE0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100774047", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774047", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A3Q1MCU7-1", "protein_name": "3'(2'),5'-bisphosphate nucleotidase 1", "gene_name": "BPNT1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MASSPTVLMRLVASAYSIAQKAGTIVRRVIAEGDLGIIEKTCATDLQTKADRLVQVSICSSLARKFPKLTIIGEEDLPPEDVDQELIEDGQWEEILKQPCPSQYSAIKEEDLVVWVDPLDGTKEYTEGLLDNVTVLIGIAYEGKAIAGVINQPYYNYQNNENQKLREPRNDAKAGPDAVLGRTIWGVLGLGAFGFQLKEAPAGKHIITTTRSHNSQLVTDCITAMNPDDVLRVGGAGNKIIQLIEGKASAYVFASPGCKKWDTCAPEVILHAVGGKLTDIHGNALQYNKEVKHMNSAGVLATLRNYDYYASRVPQSVKNALVP", "length": 323 }, "evidence": [ { "id": "A0A3L7HIE2", "url": "https://omabrowser.org/oma/group/A0A3L7HIE2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "O95861-1", "protein_name": "3'(2'),5'-bisphosphate nucleotidase 1", "gene_name": "BPNT1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MASSNTVLMRLVASAYSIAQKAGMIVRRVIAEGDLGIVEKTCATDLQTKADRLAQMSICSSLARKFPKLTIIGEEDLPSEEVDQELIEDSQWEEILKQPCPSQYSAIKEEDLVVWVDPLDGTKEYTEGLLDNVTVLIGIAYEGKAIAGVINQPYYNYEAGPDAVLGRTIWGVLGLGAFGFQLKEVPAGKHIITTTRSHSNKLVTDCVAAMNPDAVLRVGGAGNKIIQLIEGKASAYVFASPGCKKWDTCAPEVILHAVGGKLTDIHGNVLQYHKDVKHMNSAGVLATLRNYDYYASRVPESIKNALVP", "length": 308 }, "evidence": [ { "id": "A0A3L7HIE2", "url": "https://omabrowser.org/oma/group/A0A3L7HIE2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q869K3-1", "protein_name": "3'(2'),5'-bisphosphate nucleotidase 1", "gene_name": "bpnt1", "tax_id": 44689, "organism": "Dictyostelium discoideum", "sequence": { "sequence": "MSKTLNILELTSACIKLAQESGDIIRDVFKSGSLGIEMKSVDDPMTKADLLSQQHIIGSLRTIWSDIKIVGEEQCEIPTIDKKPPIDLLANDKDCIEKCPEEFKQLPIDDLIIFIDPLDATREFTLGRVGCVMTLIGISFKGKPIAGIIYQPFVDCNGDGTTDQSKWVGRTIWAIVGGGIPVKGIKDRRAPEDVGKVILTTTASHFNDKVQQAVDAIKPDKLLRAGGAGYKSLLVIENQADVYVFPTVGSKLWDICGPHAILLAVGGKLTDPQGNDIIYSTDPEKIENKNGIIITISNHQKYIDLLKNFKN", "length": 311 }, "evidence": [ { "id": "A0A3L7HIE2", "url": "https://omabrowser.org/oma/group/A0A3L7HIE2/", "database": "OMA" } ], "glygen_name": "Cellular slime mold", "common_name": "Social amoeba" }, { "uniprot_canonical_ac": "Q9VAG9-1", "protein_name": "3'(2'),5'-bisphosphate nucleotidase 1", "gene_name": "Dmel\\CG7789", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MAATAPVIMRVMASSISTAKRAGGIIRDVLKKGDLGIVDKGKNDPQTEADRSAQRCIIASLAKKFPTVKIIGEEGGSDLNVCDDWLVNELDEEFLQHSCPAEWKDVKPEDFVIWVDPLDGTAEYTQGHVEHVTVLIGIAVKDAAVGGIIHQPFYQQPDGEMGRTIWGLKGLGTGGFTAVPAPAGQFIITTTRSHSNALHQQALNAFASTEVLKVGGAGFKVLQLLEGKAHAYVFATPGCKKWDTCAPEAVLEAQGGCLTNINGEHYAYNADVEHVNRQGVLASLGQDHAALVEKIPAEVRAAVGAK", "length": 306 }, "evidence": [ { "id": "A0A3L7HIE2", "url": "https://omabrowser.org/oma/group/A0A3L7HIE2/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" }, { "uniprot_canonical_ac": "Q9Z0S1-1", "protein_name": "3'(2'),5'-bisphosphate nucleotidase 1", "gene_name": "Bpnt1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASSHTVLMRLVASAYSIAQKAGTIVRCVIAEGDLGIVQKTSATDLQTKADRLVQMSICSSLARKFPKLTIIGEEDLPPGEVDQELIEDGQWEEILKQPCPSQYSAIKEEDLVVWVDPLDGTKEYTEGLLDNVTVLIGIAYEGKAIAGIINQPYYNYQAGPDAALGRTIWGVLGLGAFGFQLKEAPAGKHIITTTRSHSNQLVTDCISAMNPDTVLRVGGAGNKIIQLIEGKASAYVFASPGCKKWDTCAPEVILHAVGGKLTDIHGNALQYNKEVKHMNSAGVLAALRNYEYYASHVPESVKNALIP", "length": 308 }, "evidence": [ { "id": "A0A3L7HIE2", "url": "https://omabrowser.org/oma/group/A0A3L7HIE2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9Z1N4-1", "protein_name": "3'(2'),5'-bisphosphate nucleotidase 1", "gene_name": "Bpnt1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASSHNVLMRLVASAYSIAQKAGTIVRCVIAEGDLGIVQKTSATDLQTKADRMVQMSICSSLSRKFPKLTIIGEEDLPPGEVDQELIEDGQSEEILKQPCPSQYSAIKEEDLVVWVDPVDGTKEYTEGLLDNVTVLIGIAYEGKAIAGIINQPYYNYQAGPDAVLGRTIWGVLGLGAFGFQLKEAPAGKHIITTTRSHSNKLVTDCIAAMNPDNVLRVGGAGNKIIQLIEGKASAYVFASPGCKKWDTCAPEVILHAVGGKLTDIHGNPLQYDKEVKHMNSAGVLAALRNYEYYASRVPESVKSALIP", "length": 308 }, "evidence": [ { "id": "A0A3L7HIE2", "url": "https://omabrowser.org/oma/group/A0A3L7HIE2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "inositol-1,4-bisphosphate 1-phosphatase activity", "id": "GO:0004441", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0004441", "evidence": [ { "database": "UniProtKB", "id": "A0A3L7HIE2", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HIE2" } ], "pmid": "" }, { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A3L7HIE2", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HIE2" } ], "pmid": "" }, { "name": "3'(2'),5'-bisphosphate nucleotidase activity", "id": "GO:0008441", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008441", "evidence": [ { "database": "UniProtKB", "id": "A0A3L7HIE2", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HIE2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "phosphatidylinositol phosphate biosynthetic process", "id": "GO:0046854", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046854", "evidence": [ { "database": "UniProtKB", "id": "A0A3L7HIE2", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HIE2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 132, "end_pos": 134, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "10040", "name": "", "equation": "adenosine 3',5'-bisphosphate + H2O = AMP + phosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [ "A0A3L7HIE2-1", "A0A9J7FEK6-1" ], "evidence": [ { "id": "10040", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/10040" } ] }, { "id": "15553", "name": "", "equation": "1D-myo-inositol 1,4-bisphosphate + H2O = 1D-myo-inositol 4-phosphate + phosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [ "A0A3L7HIE2-1", "A0A9J7FBF3-1" ], "evidence": [ { "id": "15553", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/15553" } ] }, { "id": "70319", "name": "", "equation": "1D-myo-inositol 1,3,4-trisphosphate + H2O = 1D-myo-inositol 3,4-bisphosphate + phosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [ "A0A3L7HIE2-1", "A0A9J7FBF3-1" ], "evidence": [ { "id": "70319", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/70319" } ] }, { "id": "77639", "name": "", "equation": "3'-phosphoadenylyl sulfate + H2O = adenosine 5'-phosphosulfate + phosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [ "A0A3L7HIE2-1" ], "evidence": [ { "id": "77639", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/77639" } ] }, { "id": "77643", "name": "", "equation": "adenosine 2',5'-bisphosphate + H2O = AMP + phosphate", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [ "A0A3L7HIE2-1" ], "evidence": [ { "id": "77643", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/77643" } ] } ], "reaction_participants": [], "reaction_enzymes": [ { "uniprot_ac": "A0A3L7HIE2", "gene_name": "Bpnt1", "activity": [ { "ec_number": "3.1.3.57", "activity": "1D-myo-inositol 1,4-bisphosphate + H2O = 1D-myo-inositol 4-phosphate + phosphate.", "evidence": [ { "id": "A0A3L7HIE2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HIE2" } ] }, { "ec_number": "3.1.3.7", "activity": "3'-phosphoadenylyl sulfate + H2O = adenosine 5'-phosphosulfate + phosphate.", "evidence": [ { "id": "A0A3L7HIE2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HIE2" } ] }, { "ec_number": "3.1.3.7", "activity": "", "evidence": [ { "id": "A0A3L7HIE2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HIE2" } ] }, { "ec_number": "3.1.3.57", "activity": "", "evidence": [ { "id": "A0A3L7HIE2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HIE2" } ] } ] }, { "uniprot_ac": "A0A9J7FBF3", "gene_name": "LOC100755639", "activity": [ { "ec_number": "3.1.3.57", "activity": "1D-myo-inositol 1,4-bisphosphate + H2O = 1D-myo-inositol 4-phosphate + phosphate.", "evidence": [ { "id": "A0A9J7FBF3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBF3" } ] }, { "ec_number": "3.1.3.57", "activity": "", "evidence": [ { "id": "A0A9J7FBF3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FBF3" } ] } ] }, { "uniprot_ac": "A0A9J7FEK6", "gene_name": "Bpnt2", "activity": [ { "ec_number": "3.1.3.7", "activity": "3'-phosphoadenylyl sulfate + H2O = adenosine 5'-phosphosulfate + phosphate.", "evidence": [ { "id": "A0A9J7FEK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEK6" } ] }, { "ec_number": "3.1.3.7", "activity": "", "evidence": [ { "id": "A0A9J7FEK6", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FEK6" } ] } ] } ], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [ { "evidence": [ { "id": "A0A3L7HIE2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HIE2#function" }, { "id": "A0A3L7HIE2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HIE2" }, { "id": "PIRSR600760-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR600760-2" }, { "id": "G3GRE0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3GRE0#function" }, { "id": "G3GRE0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3GRE0" } ], "binding_site_uniprot": 117, "amino_acid": "Asp", "chebi_lig_id": "CHEBI_18420", "ligand": "Mg(2+)", "ligand_label": "1", "uniprotkb_ligand_comment": "catalytic", "eco_id": "ECO_0000256", "start_pos": 117, "end_pos": 117, "start_aa": "Asp", "end_aa": "Asp", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A3L7HIE2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HIE2#function" }, { "id": "A0A3L7HIE2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HIE2" }, { "id": "PIRSR600760-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR600760-2" }, { "id": "G3GRE0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3GRE0#function" }, { "id": "G3GRE0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3GRE0" } ], "binding_site_uniprot": 119, "amino_acid": "Leu", "chebi_lig_id": "CHEBI_18420", "ligand": "Mg(2+)", "ligand_label": "1", "uniprotkb_ligand_comment": "catalytic", "eco_id": "ECO_0000256", "start_pos": 119, "end_pos": 119, "start_aa": "Leu", "end_aa": "Leu", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A3L7HIE2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HIE2#function" }, { "id": "A0A3L7HIE2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HIE2" }, { "id": "PIRSR600760-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR600760-2" }, { "id": "G3GRE0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3GRE0#function" }, { "id": "G3GRE0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3GRE0" } ], "binding_site_uniprot": 120, "amino_acid": "Asp", "chebi_lig_id": "CHEBI_18420", "ligand": "Mg(2+)", "ligand_label": "1", "uniprotkb_ligand_comment": "catalytic", "eco_id": "ECO_0000256", "start_pos": 120, "end_pos": 120, "start_aa": "Asp", "end_aa": "Asp", "glycosite_overlap": "" }, { "evidence": [ { "id": "G3GRE0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3GRE0#function" }, { "id": "G3GRE0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3GRE0" }, { "id": "PIRSR600760-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR600760-2" } ], "binding_site_uniprot": 247, "amino_acid": "Lys", "chebi_lig_id": "CHEBI_18420", "ligand": "Mg(2+)", "ligand_label": "1", "uniprotkb_ligand_comment": "catalytic", "eco_id": "ECO_0000256", "start_pos": 247, "end_pos": 247, "start_aa": "Lys", "end_aa": "Lys", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A3L7HIE2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HIE2#function" }, { "id": "A0A3L7HIE2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HIE2" }, { "id": "PIRSR600760-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR600760-2" } ], "binding_site_uniprot": 262, "amino_acid": "Asp", "chebi_lig_id": "CHEBI_18420", "ligand": "Mg(2+)", "ligand_label": "1", "uniprotkb_ligand_comment": "catalytic", "eco_id": "ECO_0000256", "start_pos": 262, "end_pos": 262, "start_aa": "Asp", "end_aa": "Asp", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A3L7HIE2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HIE2#function" }, { "id": "A0A3L7HIE2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A3L7HIE2" }, { "id": "PIRSR600760-2", "database": "PIR Site Rule", "url": "https://proteininformationresource.org/cgi-bin/pirrule?id=PIRSR600760-2" }, { "id": "G3GRE0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3GRE0#function" }, { "id": "G3GRE0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/G3GRE0" } ], "binding_site_uniprot": 74, "amino_acid": "Glu", "chebi_lig_id": "CHEBI_18420", "ligand": "Mg(2+)", "ligand_label": "1", "uniprotkb_ligand_comment": "catalytic", "eco_id": "ECO_0000256", "start_pos": 74, "end_pos": 74, "start_aa": "Glu", "end_aa": "Glu", "glycosite_overlap": "" } ], "synthesized_glycans": [], "enzyme_annotation": [ { "ec_number": "3.1.3.57", "ec_name": "1D-myo-inositol 1,4-bisphosphate + H2O = 1D-myo-inositol 4-phosphate + phosphate.", "evidence": [ { "id": "3.1.3.57", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/?query=ec:3.1.3.57" }, { "id": "3.1.3.57", "database": "BRENDA Enzymes", "url": "https://www.brenda-enzymes.org/enzyme.php?ecno=3.1.3.57" } ] }, { "ec_number": "3.1.3.7", "ec_name": "3'-phosphoadenylyl sulfate + H2O = adenosine 5'-phosphosulfate + phosphate.", "evidence": [ { "id": "3.1.3.7", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/?query=ec:3.1.3.7" }, { "id": "3.1.3.7", "database": "BRENDA Enzymes", "url": "https://www.brenda-enzymes.org/enzyme.php?ecno=3.1.3.7" } ] } ], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 132, "end_pos": 134 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A061HXU8-1", "uniprot_ac": "A0A061HXU8", "uniprot_id": "A0A061HXU8_CRIGR", "mass": { "chemical_mass": 43209.0, "monoisotopic_mass": 43209.0 }, "refseq": { "ac": "XP_016833782", "name": "ras-related GTP-binding protein B isoform X9", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016833782" }, "gene_names": [ { "name": "Rragb", "type": "recommended", "evidence": [ { "id": "A0A061HXU8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061HXU8" } ] }, { "name": "Rragb", "type": "synonym", "evidence": [ { "id": "XP_016833782", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016833782" } ] } ], "protein_names": [ { "name": "Ras-related GTP-binding protein", "type": "recommended", "evidence": [ { "id": "A0A061HXU8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061HXU8/entry#names_and_taxonomy" } ] }, { "name": "ras-related GTP-binding protein B isoform X9", "type": "synonym", "evidence": [ { "id": "XP_016833782", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016833782" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614419.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_016833782", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016833782" } ] }, { "annotation": "Guanine nucleotide-binding protein that plays a crucial role in the cellular response to amino acid availability through regulation of the mTORC1 signaling cascade.", "evidence": [ { "database": "UniProtKB", "id": "G3HWV0", "url": "https://www.uniprot.org/uniprotkb/G3HWV0#function" }, { "database": "UniProtKB", "id": "RU367014", "url": "https://www.uniprot.org/uniprotkb/RU367014#function" }, { "database": "UniProtKB", "id": "A0A9J7GN55", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GN55#function" }, { "database": "UniProtKB", "id": "A0A9J7K257", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K257#function" }, { "database": "UniProtKB", "id": "A0A9J7K0G8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0G8#function" }, { "database": "UniProtKB", "id": "A0A9J7K1Y8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K1Y8#function" }, { "database": "UniProtKB", "id": "A0A061HXU8", "url": "https://www.uniprot.org/uniprotkb/A0A061HXU8#function" }, { "database": "UniProtKB", "id": "A0A061HYE7", "url": "https://www.uniprot.org/uniprotkb/A0A061HYE7#function" }, { "database": "UniProtKB", "id": "A0A9J7H886", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H886#function" }, { "database": "UniProtKB", "id": "A0A9J7GI98", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GI98#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A061HXU8", "url": "https://www.uniprot.org/uniprotkb/A0A061HXU8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Rragb", "url": "https://www.uniprot.org/uniprotkb/A0A061HXU8", "locus": {} } ], "crossref": [ { "id": "cd11384", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11384", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100764180", "url": "https://www.ncbi.nlm.nih.gov/gene/100764180", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006762", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006762", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR027417", "url": "https://www.ebi.ac.uk/interpro/entry/IPR027417", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039397", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039397", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100764180", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764180", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "AFKHACS", "url": "https://omabrowser.org/oma/group/AFKHACS/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A061HXU8", "url": "https://www.orthodb.org/?gene=A0A061HXU8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7K0G8", "url": "https://www.orthodb.org/?gene=A0A9J7K0G8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3HWV0", "url": "https://www.orthodb.org/?gene=G3HWV0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11259", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11259", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11259:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11259:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04670", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04670", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_016833782", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_016833782", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "19669", "url": "https://www.rhea-db.org/rhea/19669", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A061HXU8", "url": "https://www.uniprot.org/uniprotkb/A0A061HXU8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A061HXU8-1", "url": "https://www.uniprot.org/uniprotkb/A0A061HXU8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A061HYE7", "url": "https://www.uniprot.org/uniprotkb/A0A061HYE7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A061HYE7-1", "url": "https://www.uniprot.org/uniprotkb/A0A061HYE7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GI98", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GI98", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GI98-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GI98-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GN55", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GN55", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GN55-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GN55-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H886", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H886", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H886-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H886-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K0G8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0G8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K0G8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0G8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K1Y8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K1Y8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K1Y8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K1Y8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K257", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K257", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K257-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K257-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HWV0", "url": "https://www.uniprot.org/uniprotkb/G3HWV0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3HWV0-1", "url": "https://www.uniprot.org/uniprotkb/G3HWV0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEESDSEKKTEKENLGPGVQPPLGEPEGSLGWTMPNASMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGTTILDRIHSLQINSSLSTYSLVDSVGNTKTFDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPEAKIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECSCFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAEIIEADEVLLFERATFLVISHYQCKEQRDAHRFEKISNIIKQFKLSCSKLAASFQSMEVRNSNFAAFIDIFTSNTYVMVVMSDPSIPSAATLINIRNARKHFEKLERVDGPKQCLLMR", "length": 374, "header": "tr|A0A061HXU8-1|A0A061HXU8_CRIGR Isoform 1 of Ras-related GTP-binding protein OS=Cricetulus griseus OX=10029 GN=Rragb PE=3 SV=1 CANONICAL=A0A061HXU8-1" }, "isoforms": [ { "isoform_ac": "A0A061HXU8-1", "url": "https://www.uniprot.org/uniprotkb/A0A061HXU8/entry#A0A061HXU8-1", "sequence": { "sequence": "MEESDSEKKTEKENLGPGVQPPLGEPEGSLGWTMPNASMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGTTILDRIHSLQINSSLSTYSLVDSVGNTKTFDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPEAKIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECSCFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAEIIEADEVLLFERATFLVISHYQCKEQRDAHRFEKISNIIKQFKLSCSKLAASFQSMEVRNSNFAAFIDIFTSNTYVMVVMSDPSIPSAATLINIRNARKHFEKLERVDGPKQCLLMR", "length": 374, "header": "tr|A0A061HXU8-1|A0A061HXU8_CRIGR Isoform 1 of Ras-related GTP-binding protein OS=Cricetulus griseus OX=10029 GN=Rragb PE=3 SV=1 CANONICAL=A0A061HXU8-1" }, "locus": {} }, { "isoform_ac": "A0A061HYE7-1", "url": "https://www.uniprot.org/uniprotkb/A0A061HXU8/entry#A0A061HYE7-1", "sequence": { "sequence": "MEESDSEKKTEKENLGPGVQPPLGEPEGSLGWTMPNASMKKKVRCVRNMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGTTIDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPEAKIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECSCFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAEIIEADEVLLFERATFLVISHYQCKEQRDAHRFEKISNIIKQFKLSCSKLAASFQSMEVRNSNFAAFIDIFTSNTYVMVVMSDPSIPSAATLINIRNARKHFEKLERVDGPKQCLLMR", "length": 356, "header": "tr|A0A061HYE7-1|A0A061HYE7_CRIGR Computationally mapped isoform of Ras-related GTP-binding protein OS=Cricetulus griseus OX=10029 GN=Rragb PE=3 SV=1 CANONICAL=A0A061HXU8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GI98-1", "url": "https://www.uniprot.org/uniprotkb/A0A061HXU8/entry#A0A9J7GI98-1", "sequence": { "sequence": "MPNASMKKKVRCVRNMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGTTIDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPEAKIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECSCFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAEIIEADEVLLFERATFLVISHYQCKEQRDAHRFEKISNIIKQFKLSCSKLAASFQSMEVRNSNFAAFIDIFTSNTYVMVVMSDPSIRPPAQGWYCPIELCPPTSISNQEKAPSACPLANLVEAFSKPSNIN", "length": 336, "header": "tr|A0A9J7GI98-1|A0A9J7GI98_CRIGR Computationally mapped isoform of Ras-related GTP-binding protein OS=Cricetulus griseus OX=10029 GN=Rragb PE=3 SV=1 CANONICAL=A0A061HXU8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GN55-1", "url": "https://www.uniprot.org/uniprotkb/A0A061HXU8/entry#A0A9J7GN55-1", "sequence": { "sequence": "MEESDSEKKTEKENLGPGVQPPLGEPEGSLGWTMPNASMKKKVRCVRNMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGTTIDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPEAKIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECSCFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAEIIEADEVLLFERATFLVISHYQCKEQRDAHRFEKISNIIKQFKLSCSKLAASFQSMEVRNSNFAAFIDIFTSNTYVMVVMSDPSIPF", "length": 326, "header": "tr|A0A9J7GN55-1|A0A061HXU8_CRIGR Computationally mapped isoform of Ras-related GTP-binding protein OS=Cricetulus griseus OX=10029 GN=Rragb PE=3 SV=1 CANONICAL=A0A061HXU8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H886-1", "url": "https://www.uniprot.org/uniprotkb/A0A061HXU8/entry#A0A9J7H886-1", "sequence": { "sequence": "MEESDSEKKTEKENLGPGVQPPLGEPEGSLGWTMPNASMKKKVRCVRNMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGTTIDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPEAKIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECSCFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAEIIEADEVLLFERATFLVISHYQCKEQRDAHRFEKISNIIKQFKLSCSKLAASFQSMEVRNSNFAAFIDIFTSNTYVMVVMSDPSILLPFNFECYLFK", "length": 336, "header": "tr|A0A9J7H886-1|A0A9J7H886_CRIGR Computationally mapped isoform of Ras-related GTP-binding protein OS=Cricetulus griseus OX=10029 GN=Rragb PE=3 SV=1 CANONICAL=A0A061HXU8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K0G8-1", "url": "https://www.uniprot.org/uniprotkb/A0A061HXU8/entry#A0A9J7K0G8-1", "sequence": { "sequence": "MEESDSEKKTEKENLGPGVQPPLGEPEGSLGWTMPNASMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGTTIDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPEAKIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECSCFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAEIIEADEVLLFERATFLVISHYQCKEQRDAHRFEKISNIIKQFKLSCSKLAASFQSMEVRNSNFAAFIDIFTSNTYVMVVMSDPSIRPPAQGWYCPIELCPPTSISNQEKAPSACPLANLVEAFSKPSNIN", "length": 359, "header": "tr|A0A9J7K0G8-1|A0A061HXU8_CRIGR Computationally mapped isoform of Ras-related GTP-binding protein OS=Cricetulus griseus OX=10029 GN=Rragb PE=3 SV=1 CANONICAL=A0A061HXU8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K1Y8-1", "url": "https://www.uniprot.org/uniprotkb/A0A061HXU8/entry#A0A9J7K1Y8-1", "sequence": { "sequence": "MEESDSEKKTEKENLGPGVQPPLGEPEGSLGWTMPNASMKKKVRCVRNMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGTTIDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPEAKIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECSCFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAEIIEADEVLLFERATFLVISHYQCKEQRDAHRFEKISNIIKQFKLSCSKLAASFQSMEVRNSNFAAFIDIFTSNTYVMVVMSDPSIRPPAQGWYCPIELCPPTSISNQEKAPSACPLANLVEAFSKPSNIN", "length": 369, "header": "tr|A0A9J7K1Y8-1|A0A061HXU8_CRIGR Computationally mapped isoform of Ras-related GTP-binding protein OS=Cricetulus griseus OX=10029 GN=Rragb PE=3 SV=1 CANONICAL=A0A061HXU8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K257-1", "url": "https://www.uniprot.org/uniprotkb/A0A061HXU8/entry#A0A9J7K257-1", "sequence": { "sequence": "MPNASMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGTTIDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPEAKIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECSCFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAEIIEADEVLLFERATFLVISHYQCKEQRDAHRFEKISNIIKQFKLSCSKLAASFQSMEVRNSNFAAFIDIFTSNTYVMVVMSDPSIRPPAQGWYCPIELCPPTSISNQEKAPSACPLANLVEAFSKPSNIN", "length": 326, "header": "tr|A0A9J7K257-1|A0A061HXU8_CRIGR Computationally mapped isoform of Ras-related GTP-binding protein OS=Cricetulus griseus OX=10029 GN=Rragb PE=3 SV=1 CANONICAL=A0A061HXU8-1" }, "locus": {} }, { "isoform_ac": "G3HWV0-1", "url": "https://www.uniprot.org/uniprotkb/A0A061HXU8/entry#G3HWV0-1", "sequence": { "sequence": "MEESDSEKKTEKENLGPGVQPPLGEPEGSLGWTMPNASMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGTTIDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPEAKIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECSCFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAEIIEADEVLLFERATFLVISHYQCKEQRDAHRFEKISNIIKQFKLSCSKLAASFQSMEVRNSNFAAFIDIFTSNTYVMVVMSDPSIPSAATLINIRNARKHFEKLERVDGPKQCLLMR", "length": 346, "header": "tr|G3HWV0-1|A0A061HXU8_CRIGR Computationally mapped isoform of Ras-related GTP-binding protein OS=Cricetulus griseus OX=10029 GN=Rragb PE=3 SV=1 CANONICAL=A0A061HXU8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HWV0", "url": "https://www.uniprot.org/uniprotkb/G3HWV0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HWV0", "url": "https://www.uniprot.org/uniprotkb/G3HWV0" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100764180", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764180", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "E1BGP6-1", "protein_name": "Ras-related GTP-binding protein", "gene_name": "LOC539009", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MPNTAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPDAKIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECACFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAQIIEADEVLLFERATFLVISHYQCKEQRDVHRFEKISNIIKQFKLSCSKLATSFQSMEVRNSNFAAFIDIFTSNTYVMVVMSDPSIPSAATLINIRNARKHFEKLERVDGPKHRLLMR", "length": 313 }, "evidence": [ { "id": "A0A061HXU8", "url": "https://omabrowser.org/oma/group/A0A061HXU8/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q63487-1", "protein_name": "Ras-related GTP-binding protein B", "gene_name": "RragB", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEESDSEKKTEKENVGPKVEPPLGEPEGSLGWAMPNAAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATILDRIHSLQINSSLSTYSLVDSVGNTKTFDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPEAKIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECSCFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAEIIEADEVLLFERATFLVISHYQCKEQRDAHRFEKISNIIKQFKLSCSKLAASFQSMEVRNSNFAAFIDIFTSNTYVMVVMSDPSIPSAATLINIRNARKHFEKLERVDGPKQCLLMR", "length": 374 }, "evidence": [ { "id": "A0A061HXU8", "url": "https://omabrowser.org/oma/group/A0A061HXU8/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q6NTA4-1", "protein_name": "Ras-related GTP-binding protein B", "gene_name": "Rragb", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEESDSEKKTEKENVGPKVEPPLGEPEGSLGWAMPNAAMKKKVLLMGKSGSGKTSMRSIIFANYIARDTRRLGATILDRIHSLQINSSLSTYSLVDSVGNTKTFDVEHSHVRFLGNLVLNLWDCGGQDTFMENYFTSQRDNIFRNVEVLIYVFDVESRELEKDMHYYQSCLEAILQNSPEAKIFCLVHKMDLVQEDQRDLIFKEREEDLRRLSRPLECSCFRTSIWDETLYKAWSSIVYQLIPNVQQLEMNLRNFAEIIEADEVLLFERATFLVISHYQCKEQRDAHRFEKISNIIKQFKLSCSKLAASFQSMEVRNSNFAAFIDIFTSNTYVMVVMSDPSIPSAATLINIRNARKHFEKLERVDGPKQCLLMR", "length": 374 }, "evidence": [ { "id": "A0A061HXU8", "url": "https://omabrowser.org/oma/group/A0A061HXU8/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "positive regulation of TORC1 signaling", "id": "GO:1904263", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1904263", "evidence": [ { "database": "UniProtKB", "id": "A0A061HXU8", "url": "https://www.uniprot.org/uniprotkb/A0A061HXU8" } ], "pmid": "" }, { "name": "negative regulation of autophagy", "id": "GO:0010507", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0010507", "evidence": [ { "database": "UniProtKB", "id": "A0A061HXU8", "url": "https://www.uniprot.org/uniprotkb/A0A061HXU8" } ], "pmid": "" }, { "name": "cellular response to starvation", "id": "GO:0009267", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0009267", "evidence": [ { "database": "UniProtKB", "id": "A0A061HXU8", "url": "https://www.uniprot.org/uniprotkb/A0A061HXU8" } ], "pmid": "" }, { "name": "cellular response to amino acid stimulus", "id": "GO:0071230", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071230", "evidence": [ { "database": "UniProtKB", "id": "A0A061HXU8", "url": "https://www.uniprot.org/uniprotkb/A0A061HXU8" } ], "pmid": "" }, { "name": "intracellular protein localization", "id": "GO:0008104", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008104", "evidence": [ { "database": "UniProtKB", "id": "A0A061HXU8", "url": "https://www.uniprot.org/uniprotkb/A0A061HXU8" } ], "pmid": "" }, { "name": "cellular response to leucine starvation", "id": "GO:1990253", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990253", "evidence": [ { "database": "UniProtKB", "id": "A0A061HXU8", "url": "https://www.uniprot.org/uniprotkb/A0A061HXU8" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "GTPase activity", "id": "GO:0003924", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003924", "evidence": [ { "database": "UniProtKB", "id": "A0A061HXU8", "url": "https://www.uniprot.org/uniprotkb/A0A061HXU8" } ], "pmid": "" }, { "name": "GTP binding", "id": "GO:0005525", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005525", "evidence": [ { "database": "UniProtKB", "id": "A0A061HXU8", "url": "https://www.uniprot.org/uniprotkb/A0A061HXU8" } ], "pmid": "" }, { "name": "GTPase binding", "id": "GO:0051020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051020", "evidence": [ { "database": "UniProtKB", "id": "A0A061HXU8", "url": "https://www.uniprot.org/uniprotkb/A0A061HXU8" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A061HXU8", "url": "https://www.uniprot.org/uniprotkb/A0A061HXU8" } ], "pmid": "" }, { "name": "lysosomal membrane", "id": "GO:0005765", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005765", "evidence": [ { "database": "UniProtKB", "id": "A0A061HXU8", "url": "https://www.uniprot.org/uniprotkb/A0A061HXU8" } ], "pmid": "" }, { "name": "Gtr1-Gtr2 GTPase complex", "id": "GO:1990131", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1990131", "evidence": [ { "database": "UniProtKB", "id": "A0A061HXU8", "url": "https://www.uniprot.org/uniprotkb/A0A061HXU8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 36, "end_pos": 38, "annotation": "n_glycosylation_sequon" }, { "start_pos": 86, "end_pos": 88, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "19669", "name": "", "equation": "GTP + H2O = GDP + phosphate + H(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [ "G3GRJ8-1", "G3GY22-1", "G3H2D6-1", "G3HID1-1", "A0A9J7FY79-1", "G3IBI0-1", "G3HIM4-1", "G3HLW5-1", "G3I0B0-1", "G3H8L7-1", "G3IMU0-1", "G3HQ45-1", "G3HX83-1", "G3H515-1", "G3HRK4-1", "G3HWS3-1", "G3I185-1", "G3I2E9-1", "G3IHJ9-1", "G3I5Q9-1", "G3H3P1-1", "G3HGA7-1", "A0A9J7K0Q7-1", "G3I8B8-1", "A0A9J7FPY4-1", "A0A9J7JNI7-1", "A0A9J7JTM0-1", "G3HXK0-1", "G3I1T6-1", "A0A8C2M8V3-1", "G3HAT4-1", "G3HBU1-1", "A0A8C2MG78-1", "A0A9J7JFJ5-1", "A0A061I5F7-1", "A0A9J7GMX4-1", "G3H3X0-1", "A0A8C2MG41-1", "A0A8C2MJU2-1", "A0A8C2MKJ3-1", "A0A8C2QMP3-1", "A0A9J7F720-1", "A0A061IFE4-1", "A0A061HZZ7-1", "A0A8C2M6H7-1", "A0A8C2M9W6-1", "A0A9J7H2L4-1", "A0A8C2MH13-1", "A0A8C2MMV7-1", "A0A8C2MPE2-1", "A0A8C2LL65-1", "A0A3L7HXE9-1", "A0A8C2LGZ8-1", "A0A8C2LIB5-1", "A0A8C2LNU7-1", "A0A9J7JYH7-1", "A0A8C2LV21-1", "A0A9J7GDV9-1", "A0A8C2QEY0-1", "A0A9J7FVQ6-1", "A0A9J7K0X9-1", "A0A9J7J7P8-1", "A0A8C2M2X0-1", "A0A8C2MAV7-1", "A0A8C2MQL3-1", "A0A3L7HA69-1", "A0A8C2LLE7-1", "A0A061HWM0-1", "A0A061I5K5-1", "A0A061IH58-1", "A0A061INW8-1", "A0A3L7GXQ2-1", "A0A9J7GN19-1", "A0A3L7HQ44-1", "A0A3L7IA35-1", "A0A3L7IMK5-1", "A0A8C2LIE2-1", "A0A9J7GAZ9-1", "A0A9J7HCG9-1", "A0A9J7HC46-1", "A0A9J7HC79-1", "A0A9J7HCE0-1", "A0A9J7JRE1-1", "A0A9J7GJ78-1", "A0A9J7GKH5-1", "A0A9J7GL76-1", "A0A9J7GLC6-1", "A0A9J7GRC9-1", "A0A9J7GM12-1", "A0A9J7GM74-1", "A0A9J7GP64-1", "A0A9J7GPV5-1", "A0A9J7GQI1-1", "A0A9J7GR82-1", "A0A9J7JY44-1", "A0A9J7JTP9-1", "A0A9J7HGR2-1", "A0A9J7JZZ6-1", "A0A9J7K3I9-1", "A0A9J7K4X6-1", "A0A9J7HD72-1", "A0A9J7KEX2-1", "A0A9J7KFX8-1", "A0A9J7KEY0-1", "A0A9J7KF02-1", "A0A9J7KF14-1", "A0A9J7HFH8-1", "A0A9J7HEY0-1", 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[], "sequon_annotation_sites": [ { "start_pos": 36, "end_pos": 38 }, { "start_pos": 86, "end_pos": 88 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", 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"sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7JFQ3-1", "uniprot_ac": "A0A9J7JFQ3", "uniprot_id": "A0A9J7JFQ3_CRIGR", "mass": { "chemical_mass": 67477.0, "monoisotopic_mass": 67477.0 }, "refseq": { "ac": "XP_007652932", "name": "neuroepithelial cell-transforming gene 1 protein isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652932" }, "gene_names": [ { "name": "Net1", "type": "recommended", "evidence": [ { "id": "A0A9J7JFQ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFQ3" } ] }, { "name": "Net1", "type": "synonym", "evidence": [ { "id": "XP_007652932", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652932" } ] } ], "protein_names": [ { "name": "Neuroepithelial cell-transforming gene 1 protein isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7JFQ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFQ3/entry#names_and_taxonomy" } ] }, { "name": "neuroepithelial cell-transforming gene 1 protein isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007652932", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652932" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613580.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007652932", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652932" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JFQ3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFQ3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Net1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFQ3", "locus": {} } ], "crossref": [ { "id": "A0A9J7JFQ3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JFQ3", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00160", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00160", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd13224", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd13224", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100767327", "url": "https://www.ncbi.nlm.nih.gov/gene/100767327", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000219", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000219", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001331", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001331", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001849", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001849", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035899", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035899", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037853", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037853", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051480", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051480", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR055251", "url": "https://www.ebi.ac.uk/interpro/entry/IPR055251", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100767327", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767327", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "ECGENDP", "url": "https://omabrowser.org/oma/group/ECGENDP/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A061IFY4", "url": "https://www.orthodb.org/?gene=A0A061IFY4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JFQ3", "url": "https://www.orthodb.org/?gene=A0A9J7JFQ3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3GR78", "url": "https://www.orthodb.org/?gene=G3GR78", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46006", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46006", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46006:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46006:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00621", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00621", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF22697", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF22697", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007652932", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007652932", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A061IFY4", "url": "https://www.uniprot.org/uniprotkb/A0A061IFY4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A061IFY4-1", "url": "https://www.uniprot.org/uniprotkb/A0A061IFY4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JFQ3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFQ3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JFQ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFQ3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3GR78", "url": "https://www.uniprot.org/uniprotkb/G3GR78", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3GR78-1", "url": "https://www.uniprot.org/uniprotkb/G3GR78-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEPEPAAQKQPRPRRRSRRASVLSEDRAAGPPADTPGPAADGSRCSLRRGSSFTFLTPGPHWDFTLKRKRREKDDDVVSLSSLDLKEPSNKRVRPLARVTSLANLISPVRNGAVRRFGQTIQSFTLRGDHRSPASAQKSFSRSTVPTPTKRRSSVLWSEMLDVSMKESLTTREIKRQEAIYELSRGEQDLIEDLKLARKAYHDPMLKLSIMSEEELTHIFGDLDAYIPLHEDLLARIGEATKPDGTVEQIGHILVNWLPRLNAYKGYCSNQLAAKALLDQKKQDPRVQDFLQRCLESPFSRKLDLWSFLDIPRSRLVKYPLLLKEILRHTQKDHPDVQLLEEAVLIIQGVLSDINLKKGESECQYYIDKLEYLDEKQKDPRIEASKVLLCHGELKNKSGHKLYIFLFQDILVLTRPVTRNERHSYQVYRQPIPVQELVLEDLQDGDVRMGGSFRGAFGNSDKAKNIFRVRFQDPSPGQSHTLQANDVFHKQQWFNCIRTAIAPFQRAASPLELQGLPELHEECENNPSAGNLPAQRRSSMAPGFTQGDDESALECGSSVQTAEDTKSMKAHRVQPGLRRARDKAQSGGNRKETLV", "length": 595, "header": "tr|A0A9J7JFQ3-1|A0A9J7JFQ3_CRIGR Isoform 1 of Neuroepithelial cell-transforming gene 1 protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Net1 PE=4 SV=1 CANONICAL=A0A9J7JFQ3-1" }, "isoforms": [ { "isoform_ac": "A0A061IFY4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFQ3/entry#A0A061IFY4-1", "sequence": { "sequence": "MEPEPAAQKQPRPRRRSRRASVLSEDRAAGPPADTPGPAADGRCSLRRGSSFTFLTPGPHWDFTLKRKRREKDDDVVSLSSLDLKEPSNKRVRPLARVTSLANLISPVRNGAVRRFGQTIQSFTLRGDHRSPASAQKSFSRSTVPTPTKRRSSVLWSEMLDVSMKESLTTREIKRQEAIYELSRGEQDLIEDLKLARKAYHDPMLKLSIMSEEELTHIFGDLDAYIPLHEDLLARIGEATKPDGTVEQIGHILVNWLPRLNAYKGYCSNQLAAKALLDQKKQDPRVQDFLQRCLESPFSRKLDLWSFLDIPRSRLVKYPLLLKEILRHTQKDHPDVQLLEEAVLIIQGVLSDINLKKGESECQYYIDKLEYLDEKQKDPRIEASKVLLCHGELKNKSGHKLYIFLFQDILVLTRPVTRNERHSYQVYRQPIPVQELVLEDLQDGDVRMGGSFRGAFGNSDKAKNIFRVRFQDPSPGQSHTLQANDVFHKQQWFNCIRTAIAPFQRAASPLELQGLPELHEECENNPSAGNLPAQRRSSMAPGFTQGDDESALECGSSVQTAEDTKSMKAHRVQPGLRRARDKAQSGGNRKETLV", "length": 594, "header": "tr|A0A061IFY4-1|A0A061IFY4_CRIGR Computationally mapped isoform of Neuroepithelial cell-transforming gene 1 protein isoform X2 OS=Cricetulus griseus OX=10029 GN=Net1 PE=4 SV=1 CANONICAL=A0A9J7JFQ3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JFQ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFQ3/entry#A0A9J7JFQ3-1", "sequence": { "sequence": "MEPEPAAQKQPRPRRRSRRASVLSEDRAAGPPADTPGPAADGSRCSLRRGSSFTFLTPGPHWDFTLKRKRREKDDDVVSLSSLDLKEPSNKRVRPLARVTSLANLISPVRNGAVRRFGQTIQSFTLRGDHRSPASAQKSFSRSTVPTPTKRRSSVLWSEMLDVSMKESLTTREIKRQEAIYELSRGEQDLIEDLKLARKAYHDPMLKLSIMSEEELTHIFGDLDAYIPLHEDLLARIGEATKPDGTVEQIGHILVNWLPRLNAYKGYCSNQLAAKALLDQKKQDPRVQDFLQRCLESPFSRKLDLWSFLDIPRSRLVKYPLLLKEILRHTQKDHPDVQLLEEAVLIIQGVLSDINLKKGESECQYYIDKLEYLDEKQKDPRIEASKVLLCHGELKNKSGHKLYIFLFQDILVLTRPVTRNERHSYQVYRQPIPVQELVLEDLQDGDVRMGGSFRGAFGNSDKAKNIFRVRFQDPSPGQSHTLQANDVFHKQQWFNCIRTAIAPFQRAASPLELQGLPELHEECENNPSAGNLPAQRRSSMAPGFTQGDDESALECGSSVQTAEDTKSMKAHRVQPGLRRARDKAQSGGNRKETLV", "length": 595, "header": "tr|A0A9J7JFQ3-1|A0A9J7JFQ3_CRIGR Isoform 1 of Neuroepithelial cell-transforming gene 1 protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Net1 PE=4 SV=1 CANONICAL=A0A9J7JFQ3-1" }, "locus": {} }, { "isoform_ac": "G3GR78-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFQ3/entry#G3GR78-1", "sequence": { "sequence": "MVAHDEIGGLLPIKRTIRVLDVNNQPFREQEEPSNKRVRPLARVTSLANLISPVRNGAVRRFGQTIQSFTLRGDHRSPASAQKSFSRSTVPTPTKRRSSVLWSEMLDVSMKESLTTREIKRQEAIYELSRGEQDLIEDLKLARKAYHDPMLKLSIMSEEELTHIFGDLDAYIPLHEDLLARIGEATKPDGTVEQIGHILVNWLPRLNAYKGYCSNQLAAKALLDQKKQDPRVQDFLQRCLESPFSRKLDLWSFLDIPRSRLVKYPLLLKEILRHTQKDHPDVQLLEEAVLIIQGVLSDINLKKGESECQYYIDKLEYLDEKQKDPRIEASKVLLCHGELKNKSGHKLYIFLFQDILVLTRPVTRNERHSYQVYRQPIPVQELVLEDLQDGDVRMGGSFRGAFGNSDKAKNIFRVRFQDPSPGQSHTLQANDVFHKQQWFNCIRTAIAPFQRAASPLELQGLPELHEECENNPSAGNLPAQRRSSMAPGFTQGDDESALECGSSVQTAEDTKSMKAHRVQPGLRRARDKAQSGGNRKETLV", "length": 540, "header": "tr|G3GR78-1|A0A9J7JFQ3_CRIGR Computationally mapped isoform of Neuroepithelial cell-transforming gene 1 protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Net1 PE=4 SV=1 CANONICAL=A0A9J7JFQ3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3GR78", "url": "https://www.uniprot.org/uniprotkb/G3GR78" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3GR78", "url": "https://www.uniprot.org/uniprotkb/G3GR78" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100767327", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100767327", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A8M9Q5V8-1", "protein_name": "Neuroepithelial cell-transforming gene 1 protein isoform X1", "gene_name": "net1", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MEETDGSPAPMAEPVNERPKRSKRKSSMVEADGSPERTFKRPSLRRGSSFTFLTPGPQWDFTLKRKRREKDDADAVSLCSFDFKEPCTKRVRPLGRVTSLANLISPVKNGAVRRFGQTLQASFRGDGRSPGVPQQKPCSKAAAPTPPKRRNSTLWSETLDVHQKGTFSTKEIKRQEAIFELSRGEQDLIEDLKLARKAYHDPMLKLSIMSEEELTAIFGDLDAYIPLHEDLLDQLAKATGTDGTVRQIGKIVVDWLPRLNAYRAYCSNQLAAKALLDQKKQDPRVQDFLQRCLESPFSRKLDLWSFLDIPRSRLVKYPLLLKEILRHTPPDHPDKGSLEQAISVIQAVLADINMKKGESECQYYIDKLEYLEDKQKDPRIEQCKSLLCHGELRNKSGTKLHVFLFTEVLILTRPVTRNDRHCFQVYRQPIPVQDLVLEDLQDGDVRMGGSFRGAFSNADKAKNIFRVRFQDASQGQSHTLQVNDVFHKQQWLNCLRNAMSTQKDLTLSENEPLTTPATDVCAKRRSSSVSTVIQMDEMDENCPRAAASAPSSPSSEEPPSPTPSATSTLSSSSSSSSISAPIPSRKSKKDKRSLCPLGKRKETMV", "length": 605 }, "evidence": [ { "id": "A0A9J7JFQ3", "url": "https://omabrowser.org/oma/group/A0A9J7JFQ3/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "A0A8V0XRJ2-1", "protein_name": "Neuroepithelial cell transforming 1", "gene_name": "NET1", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MEAEPVGQKPPRRRRGRVSAGTSASRSPPADSTPGGAASCSRCPLRRGSSFTFLTPGPQWDFTLKRKRREKDDDVVSLCSLDFKEPSNKRVRPLARVTSLANLISPVRNGAVRRFGQTIQSFALRSDSKSPSCAQKSCSRSAAPTPPKRRNSVLWSEMLDVNMKESLSTKEIKRQEAIYEMSRGEQDLIEDLKLARKAYHDPMLKLSIMSEEELTHIFGDLDSYIPLHEDLLASLGEATKPDGTVEQIGPILVKWLPRLHAYKGYCSNQLAAKALLDQKKQDRRVQDFLQRCLESPFSRKLDLWSFLDIPRSRLVKYPLLLKEILRHTPKDHPDIQILEEAISIIQGVLSDINLKKGESECQYYIDKLEYLDEKQKDPRIEGSKALLCHGELKNKNGHKLYVFLFQDILVLTRPVTRNERQSYQVYRQPIPVQELLLEDLQDGDVKMGGSFRGAFGNSDKAKNIFRVRFQDPSPGQSHTLQANDIFHKQQWVNCIRTAIAPFQRTAAAAELKELPELSEESEENNPSVPNVRAQRRQSAMSGITEMELDESTAECSSILDSEEAKGTKTHRTLSGHRKTREKQLSSKRKETLV", "length": 593 }, "evidence": [ { "id": "A0A9J7JFQ3", "url": "https://omabrowser.org/oma/group/A0A9J7JFQ3/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "A0ABK0L1F0-1", "protein_name": "Neuroepithelial cell transforming 1", "gene_name": "Net1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MEPEPAAPKQPRPRRRSRRASVLSEDQAAGLPADTPGPAANERCSLRRGSSFTFLTPGPHWDFTLKRKRREKDDDVVSLSSLDLKEPSNKRVRPLGRVTSLANLISPVRNGAVRRFGQTIQSFTLRGDHRSPASTQKSFSRATVPTPTKRRSSALWSEMLDISMKESLTTREIKRQEAIYELSRGEQDLIEDLKLARKAYHDPMLKLSIMSEEELTHIFGDLDAYIPLHEDLLARIGEATKPDGTVEQIGHILVNWLPGLNAYRGYCSNQLAAKALLDQKKQDPRVQDFLQRCLESPFSRKLDLWSFLDIPRSRLVKYPLLLKEILRHTPKDHLDVQLLEKAILIIQEVLSDINLKKGESECQYYIDKLEYLDEKQKDPRIEASKVLLCHGELKNKSGHKLYIFLFQDILVLTRPVTRNERHSYQVYRQPIPVQELVLEDLQDGDVRMGGSFRGAFGNSDKAKNIFRVRFQDPSPGQSHTLQANDVFHKQQWFNCIRSAIAPFQRAASPLELQGLPDLHEECEENNPSAGNLRAQRRSCVLPGVMQVDHESVLECGSSVQTSEDTRNAKAHRPQHGLRRARDKAQLGGKKKETLV", "length": 595 }, "evidence": [ { "id": "A0A9J7JFQ3", "url": "https://omabrowser.org/oma/group/A0A9J7JFQ3/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q7Z628-1", "protein_name": "Neuroepithelial cell-transforming gene 1 protein", "gene_name": "NET1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEPELAAQKQPRPRRRSRRASGLSTEGATGPSADTSGSELDGRCSLRRGSSFTFLTPGPNWDFTLKRKRREKDDDVVSLSSLDLKEPSNKRVRPLARVTSLANLISPVRNGAVRRFGQTIQSFTLRGDHRSPASAQKFSSRSTVPTPAKRRSSALWSEMLDITMKESLTTREIRRQEAIYEMSRGEQDLIEDLKLARKAYHDPMLKLSIMSEEELTHIFGDLDSYIPLHEDLLTRIGEATKPDGTVEQIGHILVSWLPRLNAYRGYCSNQLAAKALLDQKKQDPRVQDFLQRCLESPFSRKLDLWSFLDIPRSRLVKYPLLLKEILKHTPKEHPDVQLLEDAILIIQGVLSDINLKKGESECQYYIDKLEYLDEKQRDPRIEASKVLLCHGELRSKSGHKLYIFLFQDILVLTRPVTRNERHSYQVYRQPIPVQELVLEDLQDGDVRMGGSFRGAFSNSEKAKNIFRIRFHDPSPAQSHTLQANDVFHKQQWFNCIRAAIAPFQSAGSPPELQGLPELHEECEGNHPSARKLTAQRRASTVSSVTQVEVDENAYRCGSGMQMAEDSKSLKTHQTQPGIRRARDKALSGGKRKETLV", "length": 596 }, "evidence": [ { "id": "A0A9J7JFQ3", "url": "https://omabrowser.org/oma/group/A0A9J7JFQ3/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9Z206-1", "protein_name": "Neuroepithelial cell-transforming gene 1 protein", "gene_name": "Net1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEPEPAAQKQPRPRRRSRRVSMLSEEPAAGLPADTPGPAANERCSLRRGSSFTFLTPGPHWDFTLKRKRREKDDDAVSLSSLDLKEPSNKRVRPLARVTSLANLISPVRNGAVRRFGQTIQSFTLRGDHRSPASAQKSFSRSTVPTPTKRRSSALWSEMLDINMKESLTTREIKRQEAIYELSRGEQDLIEDLKLARKAYHDPMLKLSIMSEEELTHIFGDLDAYIPLHEDLLARIGEATKPDGTVEQIGHILVNWLPGLNAYRGYCSNQLAAKALLDQKKQDPRVQDFLQRCLESPFSRKLDLWSFLDIPRSRLVKYPLLLKEILRHTPKDHRDVQLLEEAILIIQGVLSDINLKKGESECQYYINKLEYLDEKQKDPRIEASKVLLCHGELKNKSGHKLYIFLFQDILVLTRPVTRNERHLYQVYRQPIPVQELVLEDLQDGDVRMGGSFRGAFGNSDKAKNIFRVRFQDPSPGHSHTLQANDVFHKQQWFNCIRAAIAPFQRAASPLELQGLPDLHEECEENNPSAGNLRAQRRSCVVPGVMQIDEESALDCGSSVQTVEDTRNMKAQRPQPGLRRARDKAQSGGKKKETLV", "length": 595 }, "evidence": [ { "id": "A0A9J7JFQ3", "url": "https://omabrowser.org/oma/group/A0A9J7JFQ3/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JFQ3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFQ3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "intracellular signal transduction", "id": "GO:0035556", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035556", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JFQ3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFQ3" } ], "pmid": "" }, { "name": "positive regulation of Rho protein signal transduction", "id": "GO:0035025", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0035025", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JFQ3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFQ3" } ], "pmid": "" }, { "name": "positive regulation of apoptotic process", "id": "GO:0043065", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043065", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JFQ3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFQ3" } ], "pmid": "" }, { "name": "cellular response to hydrogen peroxide", "id": "GO:0070301", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0070301", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JFQ3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFQ3" } ], "pmid": "" }, { "name": "cellular response to ionizing radiation", "id": "GO:0071479", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0071479", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JFQ3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFQ3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005085", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JFQ3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFQ3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 396, "end_pos": 398, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JFQ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFQ3" }, { "id": "PS50010", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50010" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DH", "eco_id": "ECO_0000259", "start_pos": 175, "end_pos": 357, "start_aa": "Lys", "end_aa": "Lys", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7JFQ3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFQ3" }, { "id": "PS50003", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50003" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PH", "eco_id": "ECO_0000259", "start_pos": 387, "end_pos": 502, "start_aa": "Val", "end_aa": "Ala", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 396, "end_pos": 398 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A061IPJ2-1", "uniprot_ac": "A0A061IPJ2", "uniprot_id": "A0A061IPJ2_CRIGR", "mass": { "chemical_mass": 94620.0, "monoisotopic_mass": 94620.0 }, "refseq": { "ac": "XP_007649722", "name": "AMP deaminase 2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007649722" }, "gene_names": [ { "name": "Ampd2", "type": "recommended", "evidence": [ { "id": "A0A061IPJ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061IPJ2" } ] }, { "name": "Ampd2", "type": "synonym", "evidence": [ { "id": "XP_007649722", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007649722" } ] } ], "protein_names": [ { "name": "AMP deaminase", "type": "recommended", "evidence": [ { "id": "A0A061IPJ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061IPJ2/entry#names_and_taxonomy" } ] }, { "name": "3.5.4.6", "type": "synonym", "evidence": [ { "id": "A0A061IPJ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061IPJ2/entry#names_and_taxonomy" } ] }, { "name": "AMP deaminase 2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007649722", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007649722" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614997.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007649722", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007649722" } ] }, { "annotation": "AMP deaminase plays a critical role in energy metabolism. Catalyzes the deamination of AMP to IMP and plays an important role in the purine nucleotide cycle.", "evidence": [ { "database": "UniProtKB", "id": "G3I798", "url": "https://www.uniprot.org/uniprotkb/G3I798#function" }, { "database": "UniProtKB", "id": "ARBA00054146", "url": "https://www.uniprot.org/uniprotkb/ARBA00054146#function" }, { "database": "UniProtKB", "id": "A0A061IPJ2", "url": "https://www.uniprot.org/uniprotkb/A0A061IPJ2#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A061IPJ2", "url": "https://www.uniprot.org/uniprotkb/A0A061IPJ2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ampd2", "url": "https://www.uniprot.org/uniprotkb/A0A061IPJ2", "locus": {} } ], "crossref": [ { "id": "cd01319", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01319", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100774910", "url": "https://www.ncbi.nlm.nih.gov/gene/100774910", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006329", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006329", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR006650", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006650", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032466", "url": "https://www.ebi.ac.uk/interpro/entry/IPR032466", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100774910", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774910", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "FHRKFPY", "url": "https://omabrowser.org/oma/group/FHRKFPY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A061IPJ2", "url": "https://www.orthodb.org/?gene=A0A061IPJ2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3I798", "url": "https://www.orthodb.org/?gene=G3I798", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11359", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11359", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11359:SF3", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11359:SF3", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF19326", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19326", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007649722", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007649722", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "14777", "url": "https://www.rhea-db.org/rhea/14777", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A061IPJ2", "url": "https://www.uniprot.org/uniprotkb/A0A061IPJ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A061IPJ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A061IPJ2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3I798", "url": "https://www.uniprot.org/uniprotkb/G3I798", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3I798-1", "url": "https://www.uniprot.org/uniprotkb/G3I798-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MASYSGPGKSKAKYPFKKRASLQASAAAPEARGGLGASPLQSARSLPGTAPCLKHFPLDLRTSMDGKCKEIAEELFSRSLAESELRSAPYEFPEASPIEQLEERRQRLERQISQDVKLEPDILLRAKQDFLKTDSDSDLQLYKEQGEGQGDRGLWERDVVLEREFQRVIISGEEKCGVPFTDLLDAAKSVVRALFIREKYMALSLQSFCPTTRRYLQQLAEKPLETRTYEQSPDTPVSADAPVHPPALEQHPYEHCEPSTMPGDLGLGLRMVRGVVHVYTRRDPDEHCPEVELPYPDLQEFVADVNVLMALIINGPIKSFCYRRLQYLSSKFQMHVLLNEMKELAAQKKVPHRDFYNIRKVDTHIHASSCMNQKHLLRFIKRAMKRHLEEIVHVEQGREQTLREVFESMNLTAYDLSVDTLDVHADRNTFHRFDKFNAKYNPIGESVLREIFIKTDNKISGKYFAHIIKEVMSDLEESKYQNAELRLSIYGRSRDEWDKLARWAVVHKVHSPNVRWLVQVPRLFDVYRTKGQLANFQEMLENIFLPLFEATVHPASHPELHLFLEHVDGFDSVDDESKPENHVFNLESPLPEAWVEEDNPPYAYYLYYTFANMAMLNHLRRQRGFHTFVLRPHCGEAGPIHHLVSAFMLAENISHGLLLRKAPVLQYLYYLAQIGIAMSPLSNNSLFLSYHRNPLPEYLSRGLMVSLSTDDPLQFHFTKEPLMEEYSIATQVWKLSSCDMCELARNSVLMSGFSHKVKSHWLGPNYTKEGPEGNDIRRTNVPDIRVGYRHETLCQELALITQAVQSEMLETIPEEVGLVMSPGP", "length": 824, "header": "tr|A0A061IPJ2-1|A0A061IPJ2_CRIGR Isoform 1 of AMP deaminase OS=Cricetulus griseus OX=10029 GN=Ampd2 PE=3 SV=1 CANONICAL=A0A061IPJ2-1" }, "isoforms": [ { "isoform_ac": "A0A061IPJ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A061IPJ2/entry#A0A061IPJ2-1", "sequence": { "sequence": "MASYSGPGKSKAKYPFKKRASLQASAAAPEARGGLGASPLQSARSLPGTAPCLKHFPLDLRTSMDGKCKEIAEELFSRSLAESELRSAPYEFPEASPIEQLEERRQRLERQISQDVKLEPDILLRAKQDFLKTDSDSDLQLYKEQGEGQGDRGLWERDVVLEREFQRVIISGEEKCGVPFTDLLDAAKSVVRALFIREKYMALSLQSFCPTTRRYLQQLAEKPLETRTYEQSPDTPVSADAPVHPPALEQHPYEHCEPSTMPGDLGLGLRMVRGVVHVYTRRDPDEHCPEVELPYPDLQEFVADVNVLMALIINGPIKSFCYRRLQYLSSKFQMHVLLNEMKELAAQKKVPHRDFYNIRKVDTHIHASSCMNQKHLLRFIKRAMKRHLEEIVHVEQGREQTLREVFESMNLTAYDLSVDTLDVHADRNTFHRFDKFNAKYNPIGESVLREIFIKTDNKISGKYFAHIIKEVMSDLEESKYQNAELRLSIYGRSRDEWDKLARWAVVHKVHSPNVRWLVQVPRLFDVYRTKGQLANFQEMLENIFLPLFEATVHPASHPELHLFLEHVDGFDSVDDESKPENHVFNLESPLPEAWVEEDNPPYAYYLYYTFANMAMLNHLRRQRGFHTFVLRPHCGEAGPIHHLVSAFMLAENISHGLLLRKAPVLQYLYYLAQIGIAMSPLSNNSLFLSYHRNPLPEYLSRGLMVSLSTDDPLQFHFTKEPLMEEYSIATQVWKLSSCDMCELARNSVLMSGFSHKVKSHWLGPNYTKEGPEGNDIRRTNVPDIRVGYRHETLCQELALITQAVQSEMLETIPEEVGLVMSPGP", "length": 824, "header": "tr|A0A061IPJ2-1|A0A061IPJ2_CRIGR Isoform 1 of AMP deaminase OS=Cricetulus griseus OX=10029 GN=Ampd2 PE=3 SV=1 CANONICAL=A0A061IPJ2-1" }, "locus": {} }, { "isoform_ac": "G3I798-1", "url": "https://www.uniprot.org/uniprotkb/A0A061IPJ2/entry#G3I798-1", "sequence": { "sequence": "MASEARGGLGASPLQSARSLPGTAPCLKHFPLDLRTSMDGKCKEIAEELFSRSLAESELRSAPYEFPEASPIEQLEERRQRLERQISQDVKLEPDILLRAKQDFLKTDSDSDLQLYKEQGEGQGDRGLWERDVVLEREFQRVIISGEEKCGVPFTDLLDAAKSVVRALFIREKYMALSLQSFCPTTRRYLQQLAEKPLETRTYEQSPDTPVSADAPVHPPALEQHPYEHCEPSTMPGDLGLGLRMVRGVVHVYTRRDPDEHCPEVELPYPDLQEFVADVNVLMALIINGPIKSFCYRRLQYLSSKFQMHVLLNEMKELAAQKKVPHRDFYNIRKVDTHIHASSCMNQKHLLRFIKRAMKRHLEEIVHVEQGREQTLREVFESMNLTAYDLSVDTLDVHADRNTFHRFDKFNAKYNPIGESVLREIFIKTDNKISGKYFAHIIKEVMSDLEESKYQNAELRLSIYGRSRDEWDKLARWAVVHKVHSPNVRWLVQVPRLFDVYRTKGQLANFQEMLENIFLPLFEATVHPASHPELHLFLEHVDGFDSVDDESKPENHVFNLESPLPEAWVEEDNPPYAYYLYYTFANMAMLNHLRRQRGFHTFVLRPHCGEAGPIHHLVSAFMLAENISHGLLLRKAPVLQYLYYLAQIGIAMSPLSNNSLFLSYHRNPLPEYLSRGLMVSLSTDDPLQFHFTKEPLMEEYSIATQVWKLSSCDMCELARNSVLMSGFSHKVKSHWLGPNYTKEGPEGNDIRRTNVPDIRVGYRHETLCQELALITQAVQSEMLETIPEEVGLVMSPGP", "length": 798, "header": "tr|G3I798-1|A0A061IPJ2_CRIGR Computationally mapped isoform of AMP deaminase OS=Cricetulus griseus OX=10029 GN=Ampd2 PE=3 SV=1 CANONICAL=A0A061IPJ2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [ "enzyme" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3I798", "url": "https://www.uniprot.org/uniprotkb/G3I798" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3I798", "url": "https://www.uniprot.org/uniprotkb/G3I798" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100774910", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774910", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "P15274-1", "protein_name": "AMP deaminase", "gene_name": "AMD1", "tax_id": 559292, "organism": "Saccharomyces cerevisiae S288C", "sequence": { "sequence": "MDNQATQRLNDLSLEPAPSHDEQDGSGLVIDIDQRKIGDEQAGVVVDDETPPLEQQDSHESLAADSRNANFSYHENQQLLENGTKQLALDEHDSHSAILEQPSHSTNCSSSNIAAMNKGHDSADHASQNSGGKPRTLSASAQHILPETLKSFAGAPVVNKQVRTSASYKMGMLADDASQQFLDDPSSELIDLYSKVAECRNLRAKYQTISVQNDDQNPKNKPGWVVYPPPPKPSYNSDTKTVVPVTNKPDAEVFDFTKCEIPGEDPDWEFTLNDDDSYVVHRSGKTDELIAQIPTLRDYYLDLEKMISISSDGPAKSFAYRRLQYLEARWNLYYLLNEYQETSVSKRNPHRDFYNVRKVDTHVHHSACMNQKHLLRFIKHKLRHSKDEKVIFRDGKLLTLDEVFRSLHLTGYDLSIDTLDMHAHKDTFHRFDKFNLKYNPIGESRLREIFLKTNNYIKGTYLADITKQVIFDLENSKYQNCEYRISVYGRSLDEWDKLASWVIDNKVISHNVRWLVQIPRLYDIYKKTGIVQSFQDICKNLFQPLFEVTKNPQSHPKLHVFLQRVIGFDSVDDESKVDRRFHRKYPKPSLWEAPQNPPYSYYLYYLYSNVASLNQWRAKRGFNTLVLRPHCGEAGDPEHLVSAYLLAHGISHGILLRKVPFVQYLYYLDQVGIAMSPLSNNALFLTYDKNPFPRYFKRGLNVSLSTDDPLQFSYTREPLIEEYSVAAQIYKLSNVDMCELARNSVLQSGWEAQIKKHWIGKDFDKSGVEGNDVVRTNVPDIRINYRYDTLSTELELVNHFANFKRTIEEK", "length": 810 }, "evidence": [ { "id": "A0A061IPJ2", "url": "https://omabrowser.org/oma/group/A0A061IPJ2/", "database": "OMA" } ], "glygen_name": "Yeast", "common_name": "Baker's yeast" }, { "uniprot_canonical_ac": "Q01433-1", "protein_name": "AMP deaminase 2", "gene_name": "AMPD2", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MASYPSGSGKPKAKYPFKKRASLQASTAAPEARGGLGAPPLQSARSLPGPAPCLKHFPLDLRTSMDGKCKEIAEELFTRSLAESELRSAPYEFPEESPIEQLEERRQRLERQISQDVKLEPDILLRAKQDFLKTDSDSDLQLYKEQGEGQGDRSLRERDVLEREFQRVTISGEEKCGVPFTDLLDAAKSVVRALFIREKYMALSLQSFCPTTRRYLQQLAEKPLETRTYEQGPDTPVSADAPVHPPALEQHPYEHCEPSTMPGDLGLGLRMVRGVVHVYTRREPDEHCSEVELPYPDLQEFVADVNVLMALIINGPIKSFCYRRLQYLSSKFQMHVLLNEMKELAAQKKVPHRDFYNIRKVDTHIHASSCMNQKHLLRFIKRAMKRHLEEIVHVEQGREQTLREVFESMNLTAYDLSVDTLDVHADRNTFHRFDKFNAKYNPIGESVLREIFIKTDNRVSGKYFAHIIKEVMSDLEESKYQNAELRLSIYGRSRDEWDKLARWAVMHRVHSPNVRWLVQVPRLFDVYRTKGQLANFQEMLENIFLPLFEATVHPASHPELHLFLEHVDGFDSVDDESKPENHVFNLESPLPEAWVEEDNPPYAYYLYYTFANMAMLNHLRRQRGFHTFVLRPHCGEAGPIHHLVSAFMLAENISHGLLLRKAPVLQYLYYLAQIGIAMSPLSNNSLFLSYHRNPLPEYLSRGLMVSLSTDDPLQFHFTKEPLMEEYSIATQVWKLSSCDMCELARNSVLMSGFSHKVKSHWLGPNYTKEGPEGNDIRRTNVPDIRVGYRYETLCQELALITQAVQSEMLETIPEEAGITMSPGPQ", "length": 825 }, "evidence": [ { "id": "A0A061IPJ2", "url": "https://omabrowser.org/oma/group/A0A061IPJ2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q02356-1", "protein_name": "AMP deaminase 2", "gene_name": "Ampd2", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MASYPGPGKSKAKYPFKKRASLQASAAAPEARSGLGASPLQSARSLPGTAPCLKHFPLDLRTSMDGKCKEIAEELFSRSLAESELRSAPYEFPEESPIEQLEERRQRLERQISQDVKLEPDILLRAKQDFLKTDSDSDLQLYKEQGEGQGDRGLWERDVVLEREFQRVIISGEEKCGVPFTDLLDAAKSVVRALFIREKYMALSLQSFCPTTRRYLQQLAEKPLETRTYEQSPDTPVSADAPVHPPALEQHPYEHCEPSTMPGDLGLGLRMVRGVVHVYTRRDPDEHCPEVELPYPDLQEFVADVNVLMALIINGPIKSFCYRRLQYLSSKFQMHVLLNEMKELAAQKKVPHRDFYNIRKVDTHIHASSCMNQKHLLRFIKRAMKRHLEEIVHVEQGREQTLREVFESMNLTAYDLSVDTLDVHADRNTFHRFDKFNAKYNPIGESVLREIFIKTDNKISGKYFAHIIKEVMSDLEESKYQNAELRLSIYGRSRDEWDKLARWAVNHRVHSPNVRWLVQVPRLFDVYRTKGQLANFQEMLENIFLPLFEATVHPASHPELHLFLEHVDGFDSVDDESKPENHVFNLESPLPEAWVEEDNPPYAYYLYYTFANMAMLNHLRRQRGFHTFVLRPHCGEAGPIHHLVSAFMLAENISHGLLLRKAPVLQYLYYLAQIGIAMSPLSNNSLFLSYHRNPLPEYLSRGLMVSLSTDDPLQFHFTKEPLMEEYSIATQVWKLSSCDMCELARNSVLMSGFSHKVKSHWLGPNYTKEGPEGNDIRRTNVPDIRVGYRYETLCQELALITQAVQSEMLETIPEEVGIVMSPGP", "length": 824 }, "evidence": [ { "id": "A0A061IPJ2", "url": "https://omabrowser.org/oma/group/A0A061IPJ2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "Q9DBT5-2", "protein_name": "AMP deaminase 2", "gene_name": "Ampd2", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MASYPGPGKSKAKYPFKKRAGLQASAAAPEARSGLGASPLQSARSLPGNAPCLKHFPLDLRTSMDGKCKEIAEELFSRSLAESELRSAPYEFPEESPIEQLEERRQRLERQISQDVKLEPDILLRAKQDFLKTDSDSDLQLYKEQGEGQGDRGLWERDVVLEREFQRVIISGEEKCGVPFTDLLDAAKSVVRALFIREKYMALSLQSFCPTTRRYLQQLAEKPLETRTYEQSPDTPVSADAPVHPPALEQHPYEHCEPSAMPGDLGLGLRMVRGVVHVYTRRDPDEHCPEVELPYPDLQEFVADVNVLMALIINGPIKSFCYRRLQYLSSKFQMHVLLNEMKELAAQKKVPHRDFYNIRKVDTHIHASSCMNQKHLLRFIKRAMKRHLEEIVHVEQGREQTLREVFESMNLTAYDLSVDTLDVHADRNTFHRFDKFNAKYNPIGESVLREIFIKTDNKISGKYFAHIIKEVMADLEESKYQNAELRLSIYGRSRDEWDKLARWAVNHKVHSPNVRWLVQVPRLFDVYRTKGQLANFQEMLENIFLPLFEATVHPASHPELHLFLEHVDGFDSVDDESKPENHVFNLESPLPEAWVEEDNPPYAYYLYYTFANMAMLNHLRRQRGFHTFVLRPHCGEAGPIHHLVSAFMLAENISHGLLLRKAPVLQYLYYLAQIGIAMSPLSNNSLFLSYHRNPLPEYLSRGLMVSLSTDDPLQFHFTKEPLMEEYSIATQVWKLSSCDMCELARNSVLMSGFSHKVKSHWLGPNYTKEGPEGNDIRRTNVPDIRVGYRYETLCQELALITQAVQSEMLETIPEEVGIVMSPGP", "length": 824 }, "evidence": [ { "id": "A0A061IPJ2", "url": "https://omabrowser.org/oma/group/A0A061IPJ2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "X2JEY5-1", "protein_name": "AMP deaminase", "gene_name": "AMPdeam", "tax_id": 7227, "organism": "Drosophila melanogaster", "sequence": { "sequence": "MSYRGMLSTSDGSPVELRVQDVDSFDGSMMSHAATNAAGPLGSKASGKSLNACTSMSMPQKPSSLRATCDLADSPVDEKAEADVEVTNEISAPYEVPQFPIEQIEKKLQIQRHLNEKQATGPRPVATAAVLATNRESSSSTEGRESAVTMERNDADINFQRVSISGEDTSGVPLEDLERASTLLIEALRLRSHYMAMSDQSFPSTTARFLKTVKLKDRINNLPVKEVSDVHLRHSPMKITNPWNVEFPNDEDFKIKPLNGVFHIYENDDESSEIKYEYPDMSQFVNDMQVMCNMIADGPLKSFCYRRLCYLSSKYQMHVLLNELRELAAQKAVPHRDFYNTRKVDTHIHAASCMNQKHLLRFIKKTLKNNANEVVTVTNGQQMTLAQVFQSMNLTTYDLTVDMLDVHADRNTFHRFDKFNSKYNPIGESRLREVFLKTDNYLNGKYFAQIIKEVAFDLEESKYQNAELRLSIYGKSPDEWYKLAKWAIDNDVYSSNIRWLIQIPRLFDIFKSNKMMKSFQEILNNIFLPLFEATARPSKHPELHRFLQYVIGFDSVDDESKPENPLFDNDVPRPEEWTYEENPPYAYYIYYMYANMTVLNKFRQSRNMNTFVLRPHCGEAGPVQHLVCGFLMAENISHGLLLRKVPVLQYLYYLTQIGIAMSPLSNNSLFLNYHRNPLPEYLARGLIISLSTDDPLQFHFTKEPLMEEYSIAAQVWKLSSCDMCELARNSVMMSGFPHAIKQQWLGPIYYEDGIMGNDITRTNVPEIRVAYRYETLLDELSNIFKVNQTCSIADMNAT", "length": 798 }, "evidence": [ { "id": "A0A061IPJ2", "url": "https://omabrowser.org/oma/group/A0A061IPJ2/", "database": "OMA" } ], "glygen_name": "Fruit fly", "common_name": "Fruit fly" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 6, "go_terms": [ { "name": "AMP metabolic process", "id": "GO:0046033", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046033", "evidence": [ { "database": "UniProtKB", "id": "A0A061IPJ2", "url": "https://www.uniprot.org/uniprotkb/A0A061IPJ2" } ], "pmid": "" }, { "name": "energy homeostasis", "id": "GO:0097009", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0097009", "evidence": [ { "database": "UniProtKB", "id": "A0A061IPJ2", "url": "https://www.uniprot.org/uniprotkb/A0A061IPJ2" } ], "pmid": "" }, { "name": "IMP salvage", "id": "GO:0032264", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032264", "evidence": [ { "database": "UniProtKB", "id": "A0A061IPJ2", "url": "https://www.uniprot.org/uniprotkb/A0A061IPJ2" } ], "pmid": "" }, { "name": "cyclic purine nucleotide metabolic process", "id": "GO:0052652", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0052652", "evidence": [ { "database": "UniProtKB", "id": "A0A061IPJ2", "url": "https://www.uniprot.org/uniprotkb/A0A061IPJ2" } ], "pmid": "" }, { "name": "ATP metabolic process", "id": "GO:0046034", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046034", "evidence": [ { "database": "UniProtKB", "id": "A0A061IPJ2", "url": "https://www.uniprot.org/uniprotkb/A0A061IPJ2" } ], "pmid": "" }, { "name": "GTP metabolic process", "id": "GO:0046039", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046039", "evidence": [ { "database": "UniProtKB", "id": "A0A061IPJ2", "url": "https://www.uniprot.org/uniprotkb/A0A061IPJ2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytosol", "id": "GO:0005829", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005829", "evidence": [ { "database": "UniProtKB", "id": "A0A061IPJ2", "url": "https://www.uniprot.org/uniprotkb/A0A061IPJ2" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 2, "go_terms": [ { "name": "metal ion binding", "id": "GO:0046872", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0046872", "evidence": [ { "database": "UniProtKB", "id": "A0A061IPJ2", "url": "https://www.uniprot.org/uniprotkb/A0A061IPJ2" } ], "pmid": "" }, { "name": "AMP deaminase activity", "id": "GO:0003876", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003876", "evidence": [ { "database": "UniProtKB", "id": "A0A061IPJ2", "url": "https://www.uniprot.org/uniprotkb/A0A061IPJ2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 410, "end_pos": 412, "annotation": "n_glycosylation_sequon" }, { "start_pos": 652, "end_pos": 654, "annotation": "n_glycosylation_sequon" }, { "start_pos": 683, "end_pos": 685, "annotation": "n_glycosylation_sequon" }, { "start_pos": 765, "end_pos": 767, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "14777", "name": "", "equation": "AMP + H2O + H(+) = IMP + NH4(+)", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [ "A0A061IPJ2-1", "A0A9J7FQJ1-1", "A0A8C2M415-1", "A0A9J7H8Y5-1" ], "evidence": [ { "id": "14777", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/14777" } ] } ], "reaction_participants": [], "reaction_enzymes": [ { "uniprot_ac": "A0A061IPJ2", "gene_name": "Ampd2", "activity": [ { "ec_number": "3.5.4.6", "activity": "AMP + H2O + H(+) = IMP + NH4(+).", "evidence": [ { "id": "A0A061IPJ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061IPJ2" } ] }, { "ec_number": "3.5.4.6", "activity": "", "evidence": [ { "id": "A0A061IPJ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061IPJ2" } ] } ] }, { "uniprot_ac": "A0A8C2M415", "gene_name": "Ampd1", "activity": [ { "ec_number": "3.5.4.6", "activity": "AMP + H2O + H(+) = IMP + NH4(+).", "evidence": [ { "id": "A0A8C2M415", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M415" } ] }, { "ec_number": "3.5.4.6", "activity": "", "evidence": [ { "id": "A0A8C2M415", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M415" } ] } ] }, { "uniprot_ac": "A0A9J7FQJ1", "gene_name": "Ampd3", "activity": [ { "ec_number": "3.5.4.6", "activity": "AMP + H2O + H(+) = IMP + NH4(+).", "evidence": [ { "id": "A0A9J7FQJ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQJ1" } ] }, { "ec_number": "3.5.4.6", "activity": "", "evidence": [ { "id": "A0A9J7FQJ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FQJ1" } ] } ] }, { "uniprot_ac": "A0A9J7H8Y5", "gene_name": "Ampd1", "activity": [ { "ec_number": "3.5.4.6", "activity": "AMP + H2O + H(+) = IMP + NH4(+).", "evidence": [ { "id": "A0A9J7H8Y5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8Y5" } ] }, { "ec_number": "3.5.4.6", "activity": "", "evidence": [ { "id": "A0A9J7H8Y5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H8Y5" } ] } ] } ], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [ { "ec_number": "3.5.4.6", "ec_name": "AMP + H2O + H(+) = IMP + NH4(+).", "evidence": [ { "id": "3.5.4.6", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/?query=ec:3.5.4.6" }, { "id": "3.5.4.6", "database": "BRENDA Enzymes", "url": "https://www.brenda-enzymes.org/enzyme.php?ecno=3.5.4.6" } ] } ], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 410, "end_pos": 412 }, { "start_pos": 652, "end_pos": 654 }, { "start_pos": 683, "end_pos": 685 }, { "start_pos": 765, "end_pos": 767 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", 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"UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFD2/entry#names_and_taxonomy" } ] }, { "name": "centromere protein K isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007646709", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007646709" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614455.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007646709", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007646709" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JFD2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFD2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cenpk", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFD2", "locus": {} } ], "crossref": [ { "id": "A0A9J7JFD2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JFD2", "database": "AlphaFoldDB", "categories": [] }, { "id": "100760714", "url": "https://www.ncbi.nlm.nih.gov/gene/100760714", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR020993", "url": "https://www.ebi.ac.uk/interpro/entry/IPR020993", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100760714", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760714", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "QNEIILC", "url": "https://omabrowser.org/oma/group/QNEIILC/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JFD2", "url": "https://www.orthodb.org/?gene=A0A9J7JFD2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3HXI4", "url": "https://www.orthodb.org/?gene=G3HXI4", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14401", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14401", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14401:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14401:SF6", "database": "PANTHER", 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}, { "id": "G3HXI4-1", "url": "https://www.uniprot.org/uniprotkb/G3HXI4-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNLYTVLENRSSSSFVSLMILKEDSQDLVDSLLLAKIFTVKGCRVKSAKEKDAWVKLRGDELSLLIMQVKCLTAELGHWKKRTPEITPMTEDILVTLGKEEFQKLRHNLEMVVSTIQSKNEKLKEDLEREQQWLDEQQQILESLNVLHSDLKNQVVTFSESRIFNELKAKMLSIKEFKEKLLCTLGEFLEDHFPLPDGTIKKKKKNTQESNAELITLNEMIEMLINRMFEVPHDPYVKISDSFWPPYIELLLRYGIALRHPEDPTRIRLEAFHQ", "length": 274, "header": "tr|A0A9J7JFD2-1|A0A9J7JFD2_CRIGR Isoform 1 of Centromere protein K isoform X1 OS=Cricetulus griseus OX=10029 GN=Cenpk PE=3 SV=1 CANONICAL=A0A9J7JFD2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JFD2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFD2/entry#A0A9J7JFD2-1", "sequence": { "sequence": "MNLYTVLENRSSSSFVSLMILKEDSQDLVDSLLLAKIFTVKGCRVKSAKEKDAWVKLRGDELSLLIMQVKCLTAELGHWKKRTPEITPMTEDILVTLGKEEFQKLRHNLEMVVSTIQSKNEKLKEDLEREQQWLDEQQQILESLNVLHSDLKNQVVTFSESRIFNELKAKMLSIKEFKEKLLCTLGEFLEDHFPLPDGTIKKKKKNTQESNAELITLNEMIEMLINRMFEVPHDPYVKISDSFWPPYIELLLRYGIALRHPEDPTRIRLEAFHQ", "length": 274, "header": "tr|A0A9J7JFD2-1|A0A9J7JFD2_CRIGR Isoform 1 of Centromere protein K isoform X1 OS=Cricetulus griseus OX=10029 GN=Cenpk PE=3 SV=1 CANONICAL=A0A9J7JFD2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K3T0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFD2/entry#A0A9J7K3T0-1", "sequence": { "sequence": "MLRSSSSFVSLMILKEDSQDLVDSLLLAKIFTVKGCRVKSAKEKDAWVKLRGDELSLLIMQVKCLTAELGHWKKRTPEITPMTEDILVTLGKEEFQKLRHNLEMVVSTIQSKNEKLKEDLEREQQWLDEQQQILESLNVLHSDLKNQVVTFSESRIFNELKAKMLSIKEFKEKLLCTLGEFLEDHFPLPDGTIKKKKKNTQESNAELITLNEMIEMLINRMFEVPHDPYVKISDSFWPPYIELLLRYGIALRHPEDPTRIRLEAFHQ", "length": 267, "header": "tr|A0A9J7K3T0-1|A0A9J7JFD2_CRIGR Computationally mapped isoform of Centromere protein K isoform X1 OS=Cricetulus griseus OX=10029 GN=Cenpk PE=3 SV=1 CANONICAL=A0A9J7JFD2-1" }, "locus": {} }, { "isoform_ac": "G3HXI4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFD2/entry#G3HXI4-1", "sequence": { "sequence": "MLKNQQELDPDITADMEVIDTEEELIKQCEEIWKDMEDCQNKLSLIGTETLTKSNAQLSLLIMQVKCLTAELGHWKKRTPEITPMTEDILVTLGKEEFQKLRHNLEMVVSTIQSKNEKLKEDLEREQQWLDEQQQILESLNVLHSDLKNQVVTFSESRIFNELKAKMLSIKEFKEKLLCTLGEFLEDHFPLPDGTIKKKKKNTQESNAELITLNEMIEMLINRMFEVPHDPYVKISDSFWPPYIELLLRYGIALRHPEDPTRIRLEAFHQ", "length": 270, "header": "tr|G3HXI4-1|A0A9J7JFD2_CRIGR Computationally mapped isoform of Centromere protein K isoform X1 OS=Cricetulus griseus OX=10029 GN=Cenpk PE=3 SV=1 CANONICAL=A0A9J7JFD2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HXI4", "url": "https://www.uniprot.org/uniprotkb/G3HXI4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3HXI4", "url": "https://www.uniprot.org/uniprotkb/G3HXI4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100760714", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760714", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0ABK0M5T1-1", "protein_name": "Centromere protein K", "gene_name": "Cenpk", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSENQQHIDPDVIAAKDTEEELIKQCEEMWKDVEECQNKLSLIGPETLTNSNAQLSLLIMQVKCLTAELGQWNKRKPETVPLTEGVLLTLGKEEFQKLRYDLEMVRSIVQSENEKLKEDLAREQQWLDEQQQILETLNVLHSDLKNRVVTFTESRIFNELKAKILSIKEFKEKLLLALGDFLEDHFPLPDGNTQKKRKNIQELNTQLITLNEMLEMLINRMFDVPHDPYVKINESFWPPYIELLLRYGIALRHPEDPSRIRLEAFHQ", "length": 267 }, "evidence": [ { "id": "A0A9J7JFD2", "url": "https://omabrowser.org/oma/group/A0A9J7JFD2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "F1MLG9-1", "protein_name": "Centromere protein K", "gene_name": "CENPK", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MSLNQQDLDPDSTTDVEDVADAEEELVKKCEEMWKDMEECQNKLSLTGTETLTDSNAQLSLLIMQVKCLTAELSQWQKETPEMIPLNEEILVTLGKEEFQKLRNDLELVLSTIQSNNEKLKEDLEREQKWLDEQQQILESLNVLQNELKQQVVTFSESRIFNELKTKMRDIKEFKEKLLVTLGEFLEDHFPLPDRNVKKKKKNVQESTAQLITLHEMLEILLNRLFGVPHDPYVKISDSFWPPYIELLLRNGIALRHPEDPTRIRLEAFHQ", "length": 271 }, "evidence": [ { "id": "A0A9J7JFD2", "url": "https://omabrowser.org/oma/group/A0A9J7JFD2/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "Q1T7C1-1", "protein_name": "Centromere protein K", "gene_name": "CENPK", "tax_id": 9031, "organism": "Gallus gallus", "sequence": { "sequence": "MSDSVCPIDAKEELLRECENIWKEMEKCQSKLTLLAAEPVPESDAKVSLLLTRMQALRAEYHQWQKRNPELISTNPEVLLLLGEEELQKVKKELEMVLSAVQLKNEKLKEDLEREQQWHDEQVQILNAFKEIEEEMKKEVVTDSEKRVFQELKNQMLELKEYKKKLMNALGEFLEEHFPLPEKNGNAKKKRYSEEPPEQVITIHEILEILLNQLMSTPHEPYVTVDDSFWPPYLELLLRSGIVLRHPEDPNRIRLEAFHE", "length": 260 }, "evidence": [ { "id": "A0A9J7JFD2", "url": "https://omabrowser.org/oma/group/A0A9J7JFD2/", "database": "OMA" } ], "glygen_name": "Chicken", "common_name": "Chicken" }, { "uniprot_canonical_ac": "Q9BS16-1", "protein_name": "Centromere protein K", "gene_name": "CENPK", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MNQEDLDPDSTTDVGDVTNTEEELIRECEEMWKDMEECQNKLSLIGTETLTDSNAQLSLLIMQVKCLTAELSQWQKKTPETIPLTEDVLITLGKEEFQKLRQDLEMVLSTKESKNEKLKEDLEREQRWLDEQQQIMESLNVLHSELKNKVETFSESRIFNELKTKMLNIKEYKEKLLSTLGEFLEDHFPLPDRSVKKKKKNIQESSVNLITLHEMLEILINRLFDVPHDPYVKISDSFWPPYVELLLRNGIALRHPEDPTRIRLEAFHQ", "length": 269 }, "evidence": [ { "id": "A0A9J7JFD2", "url": "https://omabrowser.org/oma/group/A0A9J7JFD2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "Q9ESN5-1", "protein_name": "Centromere protein K", "gene_name": "Cenpk", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MSENKQEVHPDTITDVEAVIDTEEELIKECEEMWKDMEDCQNKLSLIGTETLTNADAQLSLLIMQMKCLTAELGQWKKRKPEIIPLNEDVLLTLGKEEFQKLRCDLEMVLSTIQSKNEKLKEDLEREQQWLDEQQQILDTLNVLNSDVENQVVTLTESRIFNELTTKIRGIKEFKEKLLLTLGAFLDNHFPLPEASTPKKRKNIQDSNAQLITLNEILEMLINRMFDVPHDPYVKIRDSFWPPYIELLLRYGIALRHPEDPSQIRLEAFHQ", "length": 271 }, "evidence": [ { "id": "A0A9J7JFD2", "url": "https://omabrowser.org/oma/group/A0A9J7JFD2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "kinetochore assembly", "id": "GO:0051382", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051382", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JFD2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFD2" } ], "pmid": "" }, { "name": "mitotic sister chromatid segregation", "id": "GO:0000070", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000070", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JFD2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFD2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JFD2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFD2" } ], "pmid": "" }, { "name": "chromosome, centromeric region", "id": "GO:0000775", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000775", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JFD2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFD2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 9, "end_pos": 11, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 9, "end_pos": 11 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7JID7-1", "uniprot_ac": "A0A9J7JID7", "uniprot_id": "A0A9J7JID7_CRIGR", "mass": { "chemical_mass": 185716.0, "monoisotopic_mass": 185716.0 }, "refseq": { "ac": "XP_007648582", "name": "PHD and RING finger domain-containing protein 1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007648582" }, "gene_names": [ { "name": "Phrf1", "type": "recommended", "evidence": [ { "id": "A0A9J7JID7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JID7" } ] }, { "name": "Phrf1", "type": "synonym", "evidence": [ { "id": "XP_007648582", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007648582" } ] } ], "protein_names": [ { "name": "PHD and RING finger domain-containing protein 1", "type": "recommended", "evidence": [ { "id": "A0A9J7JID7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JID7/entry#names_and_taxonomy" } ] }, { "name": "PHD and RING finger domain-containing protein 1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007648582", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007648582" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614763.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007648582", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007648582" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JID7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JID7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Phrf1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JID7", "locus": {} } ], "crossref": [ { "id": "cd15536", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd15536", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd16635", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd16635", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100775084", "url": "https://www.ncbi.nlm.nih.gov/gene/100775084", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001841", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001841", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001965", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001965", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011011", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011011", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013083", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013083", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR017907", "url": "https://www.ebi.ac.uk/interpro/entry/IPR017907", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019786", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019786", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR019787", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019787", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047157", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047157", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR057031", "url": "https://www.ebi.ac.uk/interpro/entry/IPR057031", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100775084", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100775084", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FP29", "url": "https://www.orthodb.org/?gene=A0A9J7FP29", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FPD6", "url": "https://www.orthodb.org/?gene=A0A9J7FPD6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FRG8", "url": "https://www.orthodb.org/?gene=A0A9J7FRG8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JID7", "url": "https://www.orthodb.org/?gene=A0A9J7JID7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JKD0", "url": "https://www.orthodb.org/?gene=A0A9J7JKD0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JL10", "url": "https://www.orthodb.org/?gene=A0A9J7JL10", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "G3I3F8", "url": "https://www.orthodb.org/?gene=G3I3F8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12618", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12618", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12618:SF20", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12618:SF20", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00628", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00628", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF13639", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13639", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23030", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23030", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007648582", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007648582", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FP29", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FP29", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FP29-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FP29-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FPD6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPD6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FPD6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FPD6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FRG8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRG8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FRG8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FRG8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JID7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JID7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JID7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JID7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JKD0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKD0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JKD0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKD0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JL10", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JL10", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JL10-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JL10-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3I3F8", "url": "https://www.uniprot.org/uniprotkb/G3I3F8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3I3F8-1", "url": "https://www.uniprot.org/uniprotkb/G3I3F8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDDDSLDELVTHSPGPDGPPRVDPSDLASDAGLCLSPCDLEESSNGHSGDSEDDTGSEHEDDTDGEETEGMSEEEDPEDRSGSEDSEDGVEMATAAVETQGKLETISAPNSDDDAESCPICLNAFRDQAVGTPETCAHYFCLDCIIEWSRNANSCPVDRIIFKCICIRAQFNGKILKKIPVENTRACEDEEAEEEDPTFCEVCGRSDREDRLLLCDGCDAGYHMECLDPPLQEVPVDEWFCPECAAPGVAPTHDAAPVSDEEVSLLLADVVPTTSRLRPRVGRTRAIARTRQSERVRATVNRNRISSARRVQHVPRYLMSSLLDETIEAVATGLSTAVYQRPLTPRVPAKRKRKAGKRKKVLGRKKIRSRSSVKSKSGGTRAKKRQHRVRKTKGRKLKNEVTSRSRIARTLGLRRPVHGTSMPSVYKPVDPTLGLMRADIGAASLSLFGDPYELDPFDSVPSSNEEPSVDPPSPLSAKRRVLSRSALQSHQPVARPVAMGLSRRQLPAVAPEPSVEEAPVPDLLGSILSGQSLLMMSSADVVIHRDGSLSAKRAAPVSLQRNSVTQSREEFRSRDNLQTGALPSGSTSSGLMGDRQQSSGLSCGDRAALRHISGRTVETPVRLDSLVTPRSSQAGNLSNESRPTVKQNNSPRLNGSNTRALPLGSASSKMTTHSNFPSKNRTPGHPQKTDPRKPDFSKLPRIPKIYRDRSDGTQDQAPASGQTVELPSTCISRLTGREGPGQPGRGRPDNEPSSRGPQETGSHTGGTRPPAPSSHGSVAPLGPSRGKSIGSTFESFRINIPGNTAHCSQLSSPGFCNTFRPVDSKVQRKENPSPLFSIKKPKQLKSEIYDPFDPTGSDSSPPSSSPESLGPGLLPSEITRTISINSPKAPAFQTVRCVTSYRVESNFGTEVEPEPQPPGESVSGMLEFLAKEPAEGASDMEQEGLGEMEPTAIQGSTVRTQRPSPPEPWDDEDGVSCTPFFGSEERTVTCVTVVEPDVPPSPDAPQVTTHRIVELRSPSRSRSTSSSRSRKKTKKKKVAKEHQRTRSSTRSGSRDRTSRSVSPVSEEHTKRHRAKAKSRRSSSDRASSQDRAKRRRDRDRDRERRRGPWGHGRCWRKSRSRSGSPGSSSCERHESRRRKRRHSGSRSRGRDCSPHSSLERDRRHKHRERSRERMDKKESMTRSRERRRWRSRSPSLEHRSRRPRSREKRPHSPEKKEAVREVSPAPARQEEPGQDGNHPAKPVPEVSVLPEVVVADLNPPDVPPVLAEPVECVPEDLDYGDSVEAGHVFEDFSNEAIFIQLDDMSSPPSPESTDSSPERDFPSNPTVPPASLPQDTTLPTIQREALLVHSEDISKPATQALTRSDQCLLRQDTVETAAATLSTPSVVPMGKDSPLLSGRGCETVQPKDAVAQAPLLRSRTLVKRVTWNLQEAEDNTPTPDRVPRTPLQRPQRPQEGDWDAEDRALIGVQQAPFSDLPPPIHVLQETGLPDADPSQPPGASRAEGLPAVGTLHSAGGILAQVYSPNMPPPLAQPSSILPYALVSQPSVQLILQGTLPLAGCGAAQSLAPVSNMPATTSELAIPTTTNNSEERTATPKSAAEKTKKEEYMKKLHMQERAVEEVKLAIKPFYQKREVTKEEYKDILRKAVQKICHSKSGEINPVKVANLVKAYVDKYRHMRRHKKTEAGEEPPTQGAEA", "length": 1696, "header": "tr|A0A9J7JID7-1|A0A9J7JID7_CRIGR Isoform 1 of PHD and RING finger domain-containing protein 1 OS=Cricetulus griseus OX=10029 GN=Phrf1 PE=4 SV=1 CANONICAL=A0A9J7JID7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FP29-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JID7/entry#A0A9J7FP29-1", "sequence": { "sequence": "MDDDSLDELVTHSPGPDGPPRVDPSDLASDAEESSNGHSGDSEDDTGSEHEDDTDGEETEGMSEEEDPEDRSGSEDSEDGVEMATAAVETQGKLETISAPNSDDDAESCPICLNAFRDQAVGTPETCAHYFCLDCIIEWSRNANSCPVDRIIFKCICIRAQFNGKILKKIPVENTRACEDEEAEEEDPTFCEVCGRSDREDRLLLCDGCDAGYHMECLDPPLQEVPVDEWFCPECAAPGVAPTHDAAPVSDEEVSLLLADVVPTTSRLRPRVGRTRAIARTRQSERVRATVNRNRISSARRVQHVPRYLMSSLLDETIEAVATGLSTAVYQRPLTPRVPAKRKRKAGKRKKVLGRKKIRSRSSVKSKSGGTRAKKRQHRVRKTKGRKLKNEVTSRSRIARTLGLRRPVHGTSMPSVYKPVDPTLGLMRADIGAASLSLFGDPYELDPFDSVPSSNEEPSVDPPSPLSAKRRVLSRSALQSHQPVARPVAMGLSRRQLPAVAPEPSVEEAPVPDLLGSILSGQSLLMMSSADVVIHRDGSLSAKRAAPVSLQRNSVTQSREEFRSRDNLQTGALPSGSTSSGLMGDRQQSSGLSCGDRAALRHISGRTVETPVRLDSLVTPRSSQAGNLSNESRPTVKQNNSPRLNGSNTRALPLGSASSKMTTHSNFPSKNRTPGHPQKTDPRKPDFSKLPRIPKIYRDRSDGTQDQAPASGQTVELPSTCISRLTGREGPGQPGRGRPDNEPSSRGPQETGSHTGGTRPPAPSSHGSVAPLGPSRGKSIGSTFESFRINIPGNTAHCSQLSSPGFCNTFRPVDSKVQRKENPSPLFSIKKPKQLKSEIYDPFDPTGSDSSPPSSSPESLGPGLLPSEITRTISINSPKAPAFQTVRCVTSYRVESNFGTEVEPEPQPPGESVSGMLEFLAKEPAEGASDMEQEGLGEMEPTAIQGSTVRTQRPSPPEPWDDEDGVSCTPFFGSEERTVTCVTVVEPDVPPSPDAPQVTTHRIVELRSPSRSRSTSSSRSRKKTKKKKVAKEHQRTRSSTRSGSRDRTSRSVSPVSEEHTKRHRAKAKSRRSSSDRASSQDRAKRRRDRDRDRERRRGPWGHGRCWRKSRSRSGSPGSSSCERHESRRRKRRHSGSRSRGRDCSPHSSLERDRRHKHRERSRERMDKKESMTRSRERRRWRSRSPSLEHRSRRPRSREKRPHSPEKKEAVREVSPAPARQEEPGQDGNHPAKPVPEVSVLPEVVVADLNPPDVPPVLAEPVECVPEDLDYGDSVEAGHVFEDFSNEAIFIQLDDMSSPPSPESTDSSPERDFPSNPTVPPASLPQDTTLPTIQREALLVHSEDISKPATQALTRSDQCLLRQDTVETAAATLSTPSVVPMGKDSPLLSGRGCETVQPKDAVAQAPLLRSRTLVKRVTWNLQEAEDNTPTPDRVPRTPLQRPQRPQEGDWDAEDRALIGVQQAPFSDLPPPIHVLQETGLPDADPSQVYSPNMPPPLAQPSSILPYALVSQPSVQLILQGTLPLAGCGAAQSLAPVSNMPATTSELAIPTTTNNSEERTATPKSAAEKTKKEEYMKKLHMQERAVEEVKLAIKPFYQKREVTKEEYKDILRKAVQKICHSKSGEINPVKVANLVKAYVDKYRHMRRHKKTEAGEEPPTQGAEA", "length": 1662, "header": "tr|A0A9J7FP29-1|A0A9J7JID7_CRIGR Computationally mapped isoform of PHD and RING finger domain-containing protein 1 OS=Cricetulus griseus OX=10029 GN=Phrf1 PE=4 SV=1 CANONICAL=A0A9J7JID7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FPD6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JID7/entry#A0A9J7FPD6-1", "sequence": { "sequence": "MDDDSLDELVTHSPGPDGPPRVDPSDLASDAGLCLSPCDLEESSNGHSGDSEDDTGSEHEDDTDGEETEGMSEEEDPEDRSGSEDSEDGVEMATAAVETQGKLETISAPNSDDDAESCPICLNAFRDQAVGTPETCAHYFCLDCIIEWSRNANSCPVDRIIFKCICIRAQFNGKILKKIPVENTRACEDEEAEEEDPTFCEVCGRSDREDRLLLCDGCDAGYHMECLDPPLQEVPVDEWFCPECAAPGVAPTHAPVSDEEVSLLLADVVPTTSRLRPRVGRTRAIARTRQSERVRATVNRNRISSARRVQHVPRYLMSSLLDETIEAVATGLSTAVYQRPLTPRVPAKRKRKAGKRKKVLGRKKIRSRSSVKSKSGGTRAKKRQHRVRKTKGRKLKNEVTSRSRIARTLGLRRPVHGTSMPSVYKPVDPTLGLMRADIGAASLSLFGDPYELDPFDSVPSSNEEPSVDPPSPLSAKRRVLSRSALQSHQPVARPVAMGLSRRQLPAVAPEPSVEEAPVPDLLGSILSGQSLLMMSSADVVIHRDGSLSAKRAAPVSLQRNSVTQSREEFRSRDNLQTGALPSGSTSSGLMGDRQQSSGLSCGDRAALRHISGRTVETPVRLDSLVTPRSSQAGNLSNESRPTVKQNNSPRLNGSNTRALPLGSASSKMTTHSNFPSKNRTPGHPQKTDPRKPDFSKLPRIPKIYRDRSDGTQDQAPASGQTVELPSTCISRLTGREGPGQPGRGRPDNEPSSRGPQETGSHTGGTRPPAPSSHGSVAPLGPSRGKSIGSTFESFRINIPGNTAHCSQLSSPGFCNTFRPVDSKVQRKENPSPLFSIKKPKQLKSEIYDPFDPTGSDSSPPSSSPESLGPGLLPSEITRTISINSPKAPAFQTVRCVTSYRVESNFGTEVEPEPQPPGESVSGMLEFLAKEPAEGASDMEQEGLGEMEPTAIQGSTVRTQRPSPPEPWDDEDGVSCTPFFGSEERTVTCVTVVEPDVPPSPDAPQVTTHRIVELRSPSRSRSTSSSRSRKKTKKKKVAKEHQRTRSSTRSGSRDRTSRSVSPVSEEHTKRHRAKAKSRRSSSDRASSQDRAKRRRDRDRDRERRRGPWGHGRCWRKSRSRSGSPGSSSCERHESRRRKRRHSGSRSRGRDCSPHSSLERDRRHKHRERSRERMDKKESMTRSRERRRWRSRSPSLEHRSRRPRSREKRPHSPEKKEAVREVSPAPARQEEPGQDGNHPAKPVPEVSVLPEVVVADLNPPDVPPVLAEPVECVPEDLDYGDSVEAGHVFEDFSNEAIFIQLDDMSSPPSPESTDSSPERDFPSNPTVPPASLPQDTTLPTIQREALLVHSEDISKPATQALTRSDQCLLRQDTVETAAATLSTPSVVPMGKDSPLLSGRGCETVQPKDAVAQAPLLRSRTLVKRVTWNLQEAEDNTPTPDRVPRTPLQRPQRPQEGDWDAEDRALIGVQQAPFSDLPPPIHVLQETGLPDADPSQPPGASRAEGLPAVGTLHSAGGILAQVYSPNMPPPLAQPSSILPYALVSQPSVQLILQGTLPLAGCGAAQSLAPVSNMPATTSELAIPTTTNNSEERTATPKSAAEKTKKEEYMKKLHMQERAVEEVKLAIKPFYQKREVTKEEYKDILRKAVQKICHSKSGEINPVKVANLVKAYVDKYRHMRRHKKTEAGEEPPTQGAEA", "length": 1694, "header": "tr|A0A9J7FPD6-1|A0A9J7JID7_CRIGR Computationally mapped isoform of PHD and RING finger domain-containing protein 1 OS=Cricetulus griseus OX=10029 GN=Phrf1 PE=4 SV=1 CANONICAL=A0A9J7JID7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FRG8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JID7/entry#A0A9J7FRG8-1", "sequence": { "sequence": "MDDDSLDELVTHSPGPDGPPRVDPSDLASDAESSNGHSGDSEDDTGSEHEDDTDGEETEGMSEEEDPEDRSGSEDSEDGVEMATAAVETQGKLETISAPNSDDDAESCPICLNAFRDQAVGTPETCAHYFCLDCIIEWSRNANSCPVDRIIFKCICIRAQFNGKILKKIPVENTRACEDEEAEEEDPTFCEVCGRSDREDRLLLCDGCDAGYHMECLDPPLQEVPVDEWFCPECAAPGVAPTHDAAPVSDEEVSLLLADVVPTTSRLRPRVGRTRAIARTRQSERVRATVNRNRISSARRVQHVPRYLMSSLLDETIEAVATGLSTAVYQRPLTPRVPAKRKRKAGKRKKVLGRKKIRSRSSVKSKSGGTRAKKRQHRVRKTKGRKLKNEVTSRSRIARTLGLRRPVHGTSMPSVYKPVDPTLGLMRADIGAASLSLFGDPYELDPFDSVPSSNEEPSVDPPSPLSAKRRVLSRSALQSHQPVARPVAMGLSRRQLPAVAPEPSVEEAPVPDLLGSILSGQSLLMMSSADVVIHRDGSLSAKRAAPVSLQRNSVTQSREEFRSRDNLQTGALPSGSTSSGLMGDRQQSSGLSCGDRAALRHISGRTVETPVRLDSLVTPRSSQAGNLSNESRPTVKQNNSPRLNGSNTRALPLGSASSKMTTHSNFPSKNRTPGHPQKTDPRKPDFSKLPRIPKIYRDRSDGTQDQAPASGQTVELPSTCISRLTGREGPGQPGRGRPDNEPSSRGPQETGSHTGGTRPPAPSSHGSVAPLGPSRGKSIGSTFESFRINIPGNTAHCSQLSSPGFCNTFRPVDSKVQRKENPSPLFSIKKPKQLKSEIYDPFDPTGSDSSPPSSSPESLGPGLLPSEITRTISINSPKAPAFQTVRCVTSYRVESNFGTEVEPEPQPPGESVSGMLEFLAKEPAEGASDMEQEGLGEMEPTAIQGSTVRTQRPSPPEPWDDEDGVSCTPFFGSEERTVTCVTVVEPDVPPSPDAPQVTTHRIVELRSPSRSRSTSSSRSRKKTKKKKVAKEHQRTRSSTRSGSRDRTSRSVSPVSEEHTKRHRAKAKSRRSSSDRASSQDRAKRRRDRDRDRERRRGPWGHGRCWRKSRSRSGSPGSSSCERHESRRRKRRHSGSRSRGRDCSPHSSLERDRRHKHRERSRERMDKKESMTRSRERRRWRSRSPSLEHRSRRPRSREKRPHSPEKKEAVREVSPAPARQEEPGQDGNHPAKPVPEVSVLPEVVVADLNPPDVPPVLAEPVECVPEDLDYGDSVEAGHVFEDFSNEAIFIQLDDMSSPPSPESTDSSPERDFPSNPTVPPASLPQDTTLPTIQREALLVHSEDISKPATQALTRSDQCLLRQDTVETAAATLSTPSVVPMGKDSPLLSGRGCETVQPKDAVAQAPLLRSRTLVKRVTWNLQEAEDNTPTPDRVPRTPLQRPQRPQEGDWDAEDRALIGVQQAPFSDLPPPIHVLQETGLPDADPSQVYSPNMPPPLAQPSSILPYALVSQPSVQLILQGTLPLAGCGAAQSLAPVSNMPATTSELAIPTTTNNSEERTATPKSAAEKTKKEEYMKKLHMQERAVEEVKLAIKPFYQKREVTKEEYKDILRKAVQKICHSKSGEINPVKVANLVKAYVDKYRHMRRHKKTEAGEEPPTQGAEA", "length": 1661, "header": "tr|A0A9J7FRG8-1|A0A9J7JID7_CRIGR Computationally mapped isoform of PHD and RING finger domain-containing protein 1 OS=Cricetulus griseus OX=10029 GN=Phrf1 PE=4 SV=1 CANONICAL=A0A9J7JID7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JID7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JID7/entry#A0A9J7JID7-1", "sequence": { "sequence": "MDDDSLDELVTHSPGPDGPPRVDPSDLASDAGLCLSPCDLEESSNGHSGDSEDDTGSEHEDDTDGEETEGMSEEEDPEDRSGSEDSEDGVEMATAAVETQGKLETISAPNSDDDAESCPICLNAFRDQAVGTPETCAHYFCLDCIIEWSRNANSCPVDRIIFKCICIRAQFNGKILKKIPVENTRACEDEEAEEEDPTFCEVCGRSDREDRLLLCDGCDAGYHMECLDPPLQEVPVDEWFCPECAAPGVAPTHDAAPVSDEEVSLLLADVVPTTSRLRPRVGRTRAIARTRQSERVRATVNRNRISSARRVQHVPRYLMSSLLDETIEAVATGLSTAVYQRPLTPRVPAKRKRKAGKRKKVLGRKKIRSRSSVKSKSGGTRAKKRQHRVRKTKGRKLKNEVTSRSRIARTLGLRRPVHGTSMPSVYKPVDPTLGLMRADIGAASLSLFGDPYELDPFDSVPSSNEEPSVDPPSPLSAKRRVLSRSALQSHQPVARPVAMGLSRRQLPAVAPEPSVEEAPVPDLLGSILSGQSLLMMSSADVVIHRDGSLSAKRAAPVSLQRNSVTQSREEFRSRDNLQTGALPSGSTSSGLMGDRQQSSGLSCGDRAALRHISGRTVETPVRLDSLVTPRSSQAGNLSNESRPTVKQNNSPRLNGSNTRALPLGSASSKMTTHSNFPSKNRTPGHPQKTDPRKPDFSKLPRIPKIYRDRSDGTQDQAPASGQTVELPSTCISRLTGREGPGQPGRGRPDNEPSSRGPQETGSHTGGTRPPAPSSHGSVAPLGPSRGKSIGSTFESFRINIPGNTAHCSQLSSPGFCNTFRPVDSKVQRKENPSPLFSIKKPKQLKSEIYDPFDPTGSDSSPPSSSPESLGPGLLPSEITRTISINSPKAPAFQTVRCVTSYRVESNFGTEVEPEPQPPGESVSGMLEFLAKEPAEGASDMEQEGLGEMEPTAIQGSTVRTQRPSPPEPWDDEDGVSCTPFFGSEERTVTCVTVVEPDVPPSPDAPQVTTHRIVELRSPSRSRSTSSSRSRKKTKKKKVAKEHQRTRSSTRSGSRDRTSRSVSPVSEEHTKRHRAKAKSRRSSSDRASSQDRAKRRRDRDRDRERRRGPWGHGRCWRKSRSRSGSPGSSSCERHESRRRKRRHSGSRSRGRDCSPHSSLERDRRHKHRERSRERMDKKESMTRSRERRRWRSRSPSLEHRSRRPRSREKRPHSPEKKEAVREVSPAPARQEEPGQDGNHPAKPVPEVSVLPEVVVADLNPPDVPPVLAEPVECVPEDLDYGDSVEAGHVFEDFSNEAIFIQLDDMSSPPSPESTDSSPERDFPSNPTVPPASLPQDTTLPTIQREALLVHSEDISKPATQALTRSDQCLLRQDTVETAAATLSTPSVVPMGKDSPLLSGRGCETVQPKDAVAQAPLLRSRTLVKRVTWNLQEAEDNTPTPDRVPRTPLQRPQRPQEGDWDAEDRALIGVQQAPFSDLPPPIHVLQETGLPDADPSQPPGASRAEGLPAVGTLHSAGGILAQVYSPNMPPPLAQPSSILPYALVSQPSVQLILQGTLPLAGCGAAQSLAPVSNMPATTSELAIPTTTNNSEERTATPKSAAEKTKKEEYMKKLHMQERAVEEVKLAIKPFYQKREVTKEEYKDILRKAVQKICHSKSGEINPVKVANLVKAYVDKYRHMRRHKKTEAGEEPPTQGAEA", "length": 1696, "header": "tr|A0A9J7JID7-1|A0A9J7JID7_CRIGR Isoform 1 of PHD and RING finger domain-containing protein 1 OS=Cricetulus griseus OX=10029 GN=Phrf1 PE=4 SV=1 CANONICAL=A0A9J7JID7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JKD0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JID7/entry#A0A9J7JKD0-1", "sequence": { "sequence": "MDDDSLDELVTHSPGPDGPPRVDPSDLASDAGLCLSPCDLEESSNGHSGDSEDDTGSEHEDDTDGEETEGMSEEEDPEDRSGSEDSEDGVEMATAAVETQGKLETISAPNSDDDAESCPICLNAFRDQAVGTPETCAHYFCLDCIIEWSRNANSCPVDRIIFKCICIRAQFNGKILKKIPVENTRACEDEEAEEEDPTFCEVCGRSDREDRLLLCDGCDAGYHMECLDPPLQEVPVDEWFCPECAAPGVAPTHDAAPVSDEEVSLLLADVVPTTSRLRPRVGRTRAIARTRQSERVRATVNRNRISSARRVQHVPRYLMSSLLDETIEAVATGLSTAVYQRPLTPRVPAKRKRKAGKRKKVLGRKKIRSRSSVKSKSGGTRAKKRQHRVRKTKGRKLKNEVTSRSRIARTLGLRRPVHGTSMPSVYKPVDPTLGLMRADIGAASLSLFGDPYELDPFDSVPSSNEEPSVDPPSPLSAKRRVLSRSALQSHQPVARPVAMGLSRRQLPAVAPEPSVEEAPVPDLLGSILSGQSLLMMSSADVVIHRDGSLSAKRAAPVSLQRNSVTQSREEFRSRDNLQTGALPSGSTSSGLMGDRQQSSGLSCGDRAALRHISGRTVETPVRLDSLVTPRSSQAGNLSNESRPTVKQNNSPRLNGSNTRALPLGSASSKMTTHSNFPSKNRTPGHPQKTDPRKPDFSKLPRIPKIYRDRSDGTQDQAPASGQTVELPSTCISRLTGREGPGQPGRGRPDNEPSSRGPQETGSHTGGTRPPAPSSHGSVAPLGPSRGKSIGSTFESFRINIPGNTAHCSQLSSPGFCNTFRPVDSKVQRKENPSPLFSIKKPKQLKSEIYDPFDPTGSDSSPPSSSPESLGPGLLPSEITRTISINSPKAPAFQTVRCVTSYRVESNFGTEVEPEPQPPGESVSGMLEFLAKEPAEGASDMEQEGLGEMEPTAIQGSTVRTQRPSPPEPWDDEDGVSCTPFFGSEERTVTCVTVVEPDVPPSPDAPQVTTHRIVELRSPSRSRSTSSSRSRKKTKKKKVAKEHQRTRSSTRSGSRDRTSRSVSPVSEEHTKRHRAKAKSRRSSSDRASSQDRAKRRRDRDRDRERRRGPWGHGRCWRKSRSRSGSPGSSSCERHESRRRKRRHSGSRSRGRDCSPHSSLERDRRHKHRERSRERMDKKESMTRSRERRRWRSRSPSLEHRSRRPRSREKRPHSPEKKEAVREVSPAPARQEEPGQDGNHPAKPVPEVSVLPEVVVADLNPPDVPPVLAEPVECVPEDLDYGDSVEAGHVFEDFSNEAIFIQLDDMSSPPSPESTDSSPERDFPSNPTVPPASLPQDTTLPTIQREALLVHSEDISKPATQALTRSDQCLLRQDTVETAAATLSTPSVVPMGKDSPLLSGRGCETVQPKDAVAQAPLLRSRTLVKRVTWNLQEAEDNTPTPDRVPRTPLQRPQRPQEGDWDAEDRALIGVQQAPFSDLPPPIHVLQETGLPDADPSQVYSPNMPPPLAQPSSILPYALVSQPSVQLILQGTLPLAGCGAAQSLAPVSNMPATTSELAIPTTTNNSEERTATPKSAAEKTKKEEYMKKLHMQERAVEEVKLAIKPFYQKREVTKEEYKDILRKAVQKICHSKSGEINPVKVANLVKAYVDKYRHMRRHKKTEAGEEPPTQGAEA", "length": 1671, "header": "tr|A0A9J7JKD0-1|A0A9J7JID7_CRIGR Computationally mapped isoform of PHD and RING finger domain-containing protein 1 OS=Cricetulus griseus OX=10029 GN=Phrf1 PE=4 SV=1 CANONICAL=A0A9J7JID7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JL10-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JID7/entry#A0A9J7JL10-1", "sequence": { "sequence": "MDDDSLDELVTHSPGPDGPPRVDPSDLASDAESSNGHSGDSEDDTGSEHEDDTDGEETEGMSEEEDPEDRSGSEDSEDGVEMATAAVETQGKLETISAPNSDDDAESCPICLNAFRDQAVGTPETCAHYFCLDCIIEWSRNANSCPVDRIIFKCICIRAQFNGKILKKIPVENTRACEDEEAEEEDPTFCEVCGRSDREDRLLLCDGCDAGYHMECLDPPLQEVPVDEWFCPECAAPGVAPTHDAAPVSDEEVSLLLADVVPTTSRLRPRVGRTRAIARTRQSERVRATVNRNRISSARRVQHVPRYLMSSLLDETIEAVATGLSTAVYQRPLTPRVPAKRKRKAGKRKKVLGRKKIRSRSSVKSKSGGTRAKKRQHRVRKTKGRKLKNEVTSRSRIARTLGLRRPVHGTSMPSVYKPVDPTLGLMRADIGAASLSLFGDPYELDPFDSVPSSNEEPSVDPPSPLSAKRRVLSRSALQSHQPVARPVAMGLSRRQLPAVAPEPSVEEAPVPDLLGSILSGQSLLMMSSADVVIHRDGSLSAKRAAPVSLQRNSVTQSREEFRSRDNLQTGALPSGSTSSGLMGDRQQSSGLSCGDRAALRHISGRTVETPVRLDSLVTPRSSQAGNLSNESRPTVKQNNSPRLNGSNTRALPLGSASSKMTTHSNFPSKNRTPGHPQKTDPRKPDFSKLPRIPKIYRDRSDGTQDQAPASGQTVELPSTCISRLTGREGPGQPGRGRPDNEPSSRGPQETGSHTGGTRPPAPSSHGSVAPLGPSRGKSIGSTFESFRINIPGNTAHCSQLSSPGFCNTFRPVDSKVQRKENPSPLFSIKKPKQLKSEIYDPFDPTGSDSSPPSSSPESLGPGLLPSEITRTISINSPKAPAFQTVRCVTSYRVESNFGTEVEPEPQPPGESVSGMLEFLAKEPAEGASDMEQEGLGEMEPTAIQGSTVRTQRPSPPEPWDDEDGVSCTPFFGSEERTVTCVTVVEPDVPPSPDAPQVTTHRIVELRSPSRSRSTSSSRSRKKTKKKKVAKEHQRTRSSTRSGSRDRTSRSVSPVSEEHTKRHRAKAKSRRSSSDRASSQDRAKRRRDRDRDRERRRGPWGHGRCWRKSRSRSGSPGSSSCERHESRRRKRRHSGSRSRGRDCSPHSSLERDRRHKHRERSRERMDKKESMTRSRERRRWRSRSPSLEHRSRRPRSREKRPHSPEKKEAVREVSPAPARQEEPGQDGNHPAKPVPEVSVLPEVVVADLNPPDVPPVLAEPVECVPEDLDYGDSVEAGHVFEDFSNEAIFIQLDDMSSPPSPESTDSSPERDFPSNPTVPPASLPQDTTLPTIQREALLVHSEDISKPATQALTRSDQCLLRQDTVETAAATLSTPSVVPMGKDSPLLSGRGCETVQPKDAVAQAPLLRSRTLVKRVTWNLQEAEDNTPTPDRVPRTPLQRPQRPQEGDWDAEDRALIGVQQAPFSDLPPPIHVLQETGLPDADPSQPPGASRAEGLPAVGTLHSAGGILAQVYSPNMPPPLAQPSSILPYALVSQPSVQLILQGTLPLAGCGAAQSLAPVSNMPATTSELAIPTTTNNSEERTATPKSAAEKTKKEEYMKKLHMQERAVEEVKLAIKPFYQKREVTKEEYKDILRKAVQKICHSKSGEINPVKVANLVKAYVDKYRHMRRHKKTEAGEEPPTQGAEA", "length": 1686, "header": "tr|A0A9J7JL10-1|A0A9J7JID7_CRIGR Computationally mapped isoform of PHD and RING finger domain-containing protein 1 OS=Cricetulus griseus OX=10029 GN=Phrf1 PE=4 SV=1 CANONICAL=A0A9J7JID7-1" }, "locus": {} }, { "isoform_ac": "G3I3F8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JID7/entry#G3I3F8-1", "sequence": { "sequence": "MDDDSLDELVTHSPGPDGPPRVDPSDLASDAEESSNGHSGDSEDDTGSEHEDDTDGEETEGMSEEEDPEDRSGSEDSEDGVEMATAAVETQGKLETISAPNSDDDAESCPICLNAFRDQAVGTPETCAHYFCLDCIIEWSRNANSCPVDRIIFKCICIRAQFNGKILKKIPVENTRACEDEEAEEEDPTFCEVCGRSDREDRLLLCDGCDAGYHMECLDPPLQEVPVDEWFCPECAAPGVAPTHDAAPVSDEEVSLLLADVVPTTSRLRPRVGRTRAIARTRQSERVRATVNRNRISSARRVQHVPRYLMSSLLDETIEAVATGLSTAVYQRPLTPRVPAKRKRKAGKRKKVLGRKKIRSRSSVKSKSGGTRAKKRQHRVRKTKGRKLKNEVTSRSRIARTLGLRRPVHGTSMPSVYKPVDPTLGLMRADIGAASLSLFGDPYELDPFDSVPSSNEEPSVDPPSPLSAKRRVLSRSALQSHQPVARPVAMGLSRRQLPAVAPEPSVEEAPVPDLLGSILSGQSLLMMSSADVVIHRDGSLSAKRAAPVSLQRNSVTQSREEFRSRDNLQTGALPSGSTSSGLMGDRQQSSGLSCGDRAALRHISGRTVETPVRLDSLVTPRSSQAGNLSNESRPTVKQNNSPRLNGSNTRALPLGSASSKMTTHSNFPSKNRTPGHPQKTDPRKPDFSKLPRIPKIYRDRSDGTQDQAPASGQTVELPSTCISRLTGREGPGQPGRGRPDNEPSSRGPQETGSHTGGTRPPAPSSHGSVAPLGPSRGKSIGSTFESFRINIPGNTAHCSQLSSPGFCNTFRPVDSKVQRKENPSPLFSIKKPKQLKSEIYDPFDPTGSDSSPPSSSPESLGPGLLPSEITRTISINSPKAPAFQTVRCVTSYRVESNFGTEVEPEPQPPGESVSGMLEFLAKEPAEGASDMEQEGLGEMEPTAIQGSTVRTQRPSPPEPWDDEDGVSCTPFFGSEERTVTCVTVVEPDVPPSPDAPQVTTHRIVELRSPSRSRSTSSSRSRKKTKKKKVAKEHQRTRSSTRSGSRDRTSRSVSPVSEEHTKRHRAKAKSRRSSSDRASSQDRAKRRRDRDRDRERRRGPWGHGRCWRKSRSRSGSPGSSSCERHESRRRKRRHSGSRSRGRDCSPHSSLERDRRHKHRERSRERMDKKESMTRSRERRRWRSRSPSLEHRSRRPRSREKRPHSPEKKEAVREVSPAPARQEEPGQDGNHPAKPVPEVSVLPEVVVADLNPPDVPPVLAEPVECVPEDLDYGDSVEAGHVFEDFSNEAIFIQLDDMSSPPSPESTDSSPERDFPSNPTVPPASLPQDTTLPTIQREALLVHSEDISKPATQALTRSDQCLLRQDTVETAAATLSTPSVVPMGKDSPLLSGRGCETVQPKDAVAQAPLLRSRTLVKRVTWNLQEAEDNTPTPDRVPRTPLQRPQRPQEGDWDAEDRALIGVQQAPFSDLPPPIHVLQETGLPDADPSQPPGASRAEGLPAVGTLHSAGGILAQVYSPNMPPPLAQPSSILPYALVSQPSVQLILQGTLPLAGCGAAQSLAPVSNMPATTSELAIPTTTNNSEERTATPKSAAEKTKKEEYMKKLHMQERAVEEVKLAIKPFYQKREVTKEEYKDILRKAVQKICHSKSGEINPVKVANLVKAYVDKYRHMRRHKKTEAGEEPPTQGAEA", "length": 1687, "header": "tr|G3I3F8-1|A0A9J7JID7_CRIGR Computationally mapped isoform of PHD and RING finger domain-containing protein 1 OS=Cricetulus griseus OX=10029 GN=Phrf1 PE=4 SV=1 CANONICAL=A0A9J7JID7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3I3F8", "url": "https://www.uniprot.org/uniprotkb/G3I3F8" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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] }, { "uniprot_canonical_ac": "A0A061HZR2-1", "uniprot_ac": "A0A061HZR2", "uniprot_id": "A0A061HZR2_CRIGR", "mass": { "chemical_mass": 175353.0, "monoisotopic_mass": 175353.0 }, "refseq": { "ac": "XP_007639139", "name": "lysine-specific demethylase 5C isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007639139" }, "gene_names": [ { "name": "Kdm5c", "type": "recommended", "evidence": [ { "id": "A0A061HZR2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061HZR2" } ] }, { "name": "Kdm5c", "type": "synonym", "evidence": [ { "id": "XP_007639139", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007639139" } ] } ], "protein_names": [ { "name": "Lysine-specific demethylase 5C", "type": "recommended", "evidence": [ { "id": "A0A061HZR2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061HZR2/entry#names_and_taxonomy" } ] }, { "name": "1.14.11.67", "type": "synonym", "evidence": [ { "id": "A0A061HZR2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061HZR2/entry#names_and_taxonomy" } ] }, { "name": "Histone demethylase JARID1C", "type": "synonym", "evidence": [ { "id": "A0A061HZR2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061HZR2/entry#names_and_taxonomy" } ] }, { "name": "Jumonji/ARID domain-containing protein 1C", "type": "synonym", "evidence": [ { "id": "A0A061HZR2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061HZR2/entry#names_and_taxonomy" } ] }, { "name": "Protein SmcX", "type": "synonym", "evidence": [ { "id": "A0A061HZR2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061HZR2/entry#names_and_taxonomy" } ] }, { "name": "Protein Xe169", "type": "synonym", "evidence": [ { "id": "A0A061HZR2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061HZR2/entry#names_and_taxonomy" } ] }, { "name": "[histone H3]-trimethyl-L-lysine(4) demethylase 5C", "type": 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This record is derived from a genomic sequence (NW_003613780.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007639139", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007639139" } ] }, { "annotation": "Histone demethylase that specifically demethylates 'Lys-4' of histone H3, thereby playing a central role in histone code. Does not demethylate histone H3 'Lys-9', H3 'Lys-27', H3 'Lys-36', H3 'Lys-79' or H4 'Lys-20'. Demethylates trimethylated and dimethylated but not monomethylated H3 'Lys-4'. Participates in transcriptional repression of neuronal genes by recruiting histone deacetylases and REST at neuron-restrictive silencer elements. 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"UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MELGSDDFLPPPECPVFEPSWAEFRDPLGYIAKIRPIAEKSGICKIRPPADWQPPFAVEVDNFRFTPRIQRLNELEAQTRVKLNYLDQIAKFWEIQGSSLKIPNVERRILDLYSLSKIVVEEGGYETICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPYEMYQSGANLVQCNTRPFDNEEKDKEYKPHSIPLRQSVQPSKFNSYGRRAKRLQPDPEPTEEDIEKNPELKKLQIYGAGPKMMGLGLMAKDKTLRKKDKEGLECPPTVVVKEELGGDVKMESASPKTFLEGKEELSHSPEPCTKMTMRLRRNHSNAQFIESYVCRMCSRGDEDDKLLLCDGCDDNYHIFCLLPPLPEIPKGVWRCPKCVMAECKRPPEAFGFEQATREYTLQSFGEMADSFKADYFNMPVHMVPTELVEKEFWRLVNSIEEDVTVEYGADIHSKEFGSGFPVSDSKRHLTPEEEEYATSGWNLNVMPVLEQSVLCHINADISGMKVPWLYVGMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPSLAAEHLEEVMKKLTPELFDSQPDLLHQLVTLMNPNTLMSHGVPVVRTNQCAGEFVITFPRAYHSGFNQGYNFAEAVNFCTADWLPAGRQCIEHYRRLRRYCVFSHEELICKMAACPEKLDLNLAAAVHKEMFIMVQEERRLRKALLEKGITEAEREAFELLPDDERQCIKCKTTCFLSALACYDCPDGLVCLSHINDLCKCSSSRQYLRYRYTLDELPAMLHKLKVRAESFDTWANKVRVALEVEDGRKRSLEELRALESEARERRFPNSELLQRLKNCLSEAEACVSRALGLVSGQEAGPDRVAGLQMTLAELRAFLSQMNNLPCAMHQIGDVKGILEQVEAYQSEAREALVSQPSSPGLLQSLLERGQQLGVEVPEAQQLQRQVEQARWLDEVKRTLAPSARRGTLATMRGLLVAGANVAPSPAVDKAQAELQELLTIAERWEEKAHLCLEARQKHPPATLEAIIHEAENIPVHLPNIQSLKEALAKARAWIADVDEIQNGDHYPCLDDLEGLVAVGRDLPVGLEELRQLELQVLTAHSWREKASKTFLKKNSCYTLLEVLCPCADAGSDSTKRSRWMEKELGLYKSDTELLGLSAQDLRDPGSVIVAFKEGEQKEKEGILQLRRTNSAKPSPLASLTTASSTASICVCGQVPAGVGALQCDLCQDWFHGRCVTVPRLLSSQRPGFTSSPLLAWWEWDTKFLCPLCMRSRRPRLETILALLVALQRLPVRLPEGEALQCLTERAISWQGRARQVLASEEVTALLGRLAELRQRLQAESKPEESLAYSSDAGEGAGHIPKVQGLLENGDSVTSPEKVATEEGSGKRDLELLSSLLPQLTGPVLELPEATRAPLEELMMEGDLLEVTLDENHSIWQLLQAGQPPDLERVHTLLELEKAERHGNRTRGRALERRRRRKVDRGGEADDAAREELEPKRVRSSEPEAEEVQEEEELEEETGGEVPPVPFPTNGSPSTQEDQDGLEPVLEAGSDTSAPFSALTSRLLMSCPQQPPRQQL", "length": 1554, "header": "tr|A0A061HZR2-1|A0A061HZR2_CRIGR Isoform 1 of Lysine-specific demethylase 5C OS=Cricetulus griseus OX=10029 GN=Kdm5c PE=3 SV=1 CANONICAL=A0A061HZR2-1" }, "isoforms": [ { "isoform_ac": "A0A061HZR2-1", "url": "https://www.uniprot.org/uniprotkb/A0A061HZR2/entry#A0A061HZR2-1", "sequence": { "sequence": "MELGSDDFLPPPECPVFEPSWAEFRDPLGYIAKIRPIAEKSGICKIRPPADWQPPFAVEVDNFRFTPRIQRLNELEAQTRVKLNYLDQIAKFWEIQGSSLKIPNVERRILDLYSLSKIVVEEGGYETICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPYEMYQSGANLVQCNTRPFDNEEKDKEYKPHSIPLRQSVQPSKFNSYGRRAKRLQPDPEPTEEDIEKNPELKKLQIYGAGPKMMGLGLMAKDKTLRKKDKEGLECPPTVVVKEELGGDVKMESASPKTFLEGKEELSHSPEPCTKMTMRLRRNHSNAQFIESYVCRMCSRGDEDDKLLLCDGCDDNYHIFCLLPPLPEIPKGVWRCPKCVMAECKRPPEAFGFEQATREYTLQSFGEMADSFKADYFNMPVHMVPTELVEKEFWRLVNSIEEDVTVEYGADIHSKEFGSGFPVSDSKRHLTPEEEEYATSGWNLNVMPVLEQSVLCHINADISGMKVPWLYVGMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPSLAAEHLEEVMKKLTPELFDSQPDLLHQLVTLMNPNTLMSHGVPVVRTNQCAGEFVITFPRAYHSGFNQGYNFAEAVNFCTADWLPAGRQCIEHYRRLRRYCVFSHEELICKMAACPEKLDLNLAAAVHKEMFIMVQEERRLRKALLEKGITEAEREAFELLPDDERQCIKCKTTCFLSALACYDCPDGLVCLSHINDLCKCSSSRQYLRYRYTLDELPAMLHKLKVRAESFDTWANKVRVALEVEDGRKRSLEELRALESEARERRFPNSELLQRLKNCLSEAEACVSRALGLVSGQEAGPDRVAGLQMTLAELRAFLSQMNNLPCAMHQIGDVKGILEQVEAYQSEAREALVSQPSSPGLLQSLLERGQQLGVEVPEAQQLQRQVEQARWLDEVKRTLAPSARRGTLATMRGLLVAGANVAPSPAVDKAQAELQELLTIAERWEEKAHLCLEARQKHPPATLEAIIHEAENIPVHLPNIQSLKEALAKARAWIADVDEIQNGDHYPCLDDLEGLVAVGRDLPVGLEELRQLELQVLTAHSWREKASKTFLKKNSCYTLLEVLCPCADAGSDSTKRSRWMEKELGLYKSDTELLGLSAQDLRDPGSVIVAFKEGEQKEKEGILQLRRTNSAKPSPLASLTTASSTASICVCGQVPAGVGALQCDLCQDWFHGRCVTVPRLLSSQRPGFTSSPLLAWWEWDTKFLCPLCMRSRRPRLETILALLVALQRLPVRLPEGEALQCLTERAISWQGRARQVLASEEVTALLGRLAELRQRLQAESKPEESLAYSSDAGEGAGHIPKVQGLLENGDSVTSPEKVATEEGSGKRDLELLSSLLPQLTGPVLELPEATRAPLEELMMEGDLLEVTLDENHSIWQLLQAGQPPDLERVHTLLELEKAERHGNRTRGRALERRRRRKVDRGGEADDAAREELEPKRVRSSEPEAEEVQEEEELEEETGGEVPPVPFPTNGSPSTQEDQDGLEPVLEAGSDTSAPFSALTSRLLMSCPQQPPRQQL", "length": 1554, "header": "tr|A0A061HZR2-1|A0A061HZR2_CRIGR Isoform 1 of Lysine-specific demethylase 5C OS=Cricetulus griseus OX=10029 GN=Kdm5c PE=3 SV=1 CANONICAL=A0A061HZR2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GJF4-1", "url": "https://www.uniprot.org/uniprotkb/A0A061HZR2/entry#A0A9J7GJF4-1", "sequence": { "sequence": "MELGSDDFLPPPECPVFEPSWAEFRDPLGYIAKIRPIAEKSGICKIRPPADWQPPFAVEVDNFRFTPRIQRLNELEAQTRVKLNYLDQIAKFWEIQGSSLKIPNVERRILDLYSLSKIVVEEGGYETICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPYEMYQSGANLVCNTRPFDNEEKDKEYKPHSIPLRQSVQPSKFNSYGRRAKRLQPDPEPTEEDIEKNPELKKLQIYGAGPKMMGLGLMAKDKTLRKKDKEGLECPPTVVVKEELGGDVKMESASPKTFLEGKEELSHSPEPCTKMTMRLRRNHSNAQFIESYVCRMCSRGDEDDKLLLCDGCDDNYHIFCLLPPLPEIPKGVWRCPKCVMAECKRPPEAFGFEQATREYTLQSFGEMADSFKADYFNMPVHMVPTELVEKEFWRLVNSIEEDVTVEYGADIHSKEFGSGFPVSDSKRHLTPEEEEYATSGWNLNVMPVLEQSVLCHINADISGMKVPWLYVGMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPSLAAEHLEEVMKKLTPELFDSQPDLLHQLVTLMNPNTLMSHGVPVVRTNQCAGEFVITFPRAYHSGFNQGYNFAEAVNFCTADWLPAGRQCIEHYRRLRRYCVFSHEELICKMAACPEKLDLNLAAAVHKEMFIMVQEERRLRKALLEKGITEAEREAFELLPDDERQCIKCKTTCFLSALACYDCPDGLVCLSHINDLCKCSSSRQYLRYRYTLDELPAMLHKLKVRAESFDTWANKVRVALEVEDGRKRSLEELRALESEARERRFPNSELLQRLKNCLSEAEACVSRALGLVSGQEAGPDRVAGLQMTLAELRAFLSQMNNLPCAMHQIGDVKGILEQVEAYQSEAREALVSQPSSPGLLQSLLERGQQLGVEVPEAQQLQRQVEQARWLDEVKRTLAPSARRGTLATMRGLLVAGANVAPSPAVDKAQAELQELLTIAERWEEKAHLCLEARQKHPPATLEAIIHEAENIPVHLPNIQSLKEALAKARAWIADVDEIQNGDHYPCLDDLEGLVAVGRDLPVGLEELRQLELQVLTAHSWREKASKTFLKKNSCYTLLEVLCPCADAGSDSTKRSRWMEKELGLYKSDTELLGLSAQDLRDPGSVIVAFKEGEQKEKEGILQLRRTNSAKPSPLASLTTASSTASICVCGQVPAGVGALQCDLCQDWFHGRCVTVPRLLSSQRPGFTSSPLLAWWEWDTKFLCPLCMRSRRPRLETILALLVALQRLPVRLPEGEALQCLTERAISWQGRARQVLASEEVTALLGRLAELRQRLQAESKPEESLAYSSDAGEGAGHIPKVQGLLENGDSVTSPEKVATEEGSDLELLSSLLPQLTGPVLELPEATRAPLEELMMEGDLLEVTLDENHSIWQLLQAGQPPDLERVHTLLELEKAERHGNRTRGRALERRRRRKVDRGGEADDAAREELEPKRVRSSEPEAEEVQEEEELEEETGGEVPPVPFPTNGSPSTQEDQDGLEPVLEAGSDTSAPFSALTSRLLMSCPQQPPRQQL", "length": 1550, "header": "tr|A0A9J7GJF4-1|A0A061HZR2_CRIGR Computationally mapped isoform of Lysine-specific demethylase 5C OS=Cricetulus griseus OX=10029 GN=Kdm5c PE=3 SV=1 CANONICAL=A0A061HZR2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GK81-1", "url": "https://www.uniprot.org/uniprotkb/A0A061HZR2/entry#A0A9J7GK81-1", "sequence": { "sequence": "MELGSDDFLPPPECPVFEPSWAEFRDPLGYIAKIRPIAEKSGICKIRPPADWQPPFAVEVDNFRFTPRIQRLNELEAQTRVKLNYLDQIAKFWEIQGSSLKIPNVERRILDLYSLSKIVVEEGGYETICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPYEMYQSGANLVQCNTRPFDNEEKDKEYKPHSIPLRQSVQPSKFNSYGRRAKRLQPDPEPTEEDIEKNPELKKLQIYGAGPKMMGLGLMAKDKTLRKKDKEGLECPPTVVVKEELGGDVKMESASPKTFLEGKEELSHSPEPCTKMTMRLRRNHSNAQFIESYVCRMCSRGDEDDKLLLCDGCDDNYHIFCLLPPLPEIPKGVWRCPKCVMAECKRPPEAFGFEQATREYTLQSFGEMADSFKADYFNMPVHMVPTELVEKEFWRLVNSIEEDVTVEYGADIHSKEFGSGFPVSDSKRHLTPEEEEYATSGWNLNVMPVLEQSVLCHINADISGMKVPWLYVGMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPSLAAEHLEEVMKKLTPELFDSQPDLLHQLVTLMNPNTLMSHGVPVVRTNQCAGEFVITFPRAYHSGFNQGYNFAEAVNFCTADWLPAGRQCIEHYRRLRRYCVFSHEELICKMAACPEKLDLNLAAAVHKEMFIMVQEERRLRKALLEKGITEAEREAFELLPDDERQCIKCKTTCFLSALACYDCPDGLVCLSHINDLCKCSSSRQYLRYRYTLDELPAMLHKLKVRAESFDTWANKVRVALEVEDGRKRSLEELRALESEARERRFPNSELLQRLKNCLSEAEACVSRALGLVSGQEAGPDRVAGLQMTLAELRAFLSQMNNLPCAMHQIGDVKGILEQVEAYQSEAREALVSQPSSPGLLQSLLERGQQLGVEVPEAQQLQRQVEQARWLDEVKRTLAPSARRGTLATMRGLLVAGANVAPSPAVDKAQAELQELLTIAERWEEKAHLCLEARQKHPPATLEAIIHEAENIPVHLPNIQSLKEALAKARAWIADVDEIQNGDHYPCLDDLEGLVAVGRDLPVGLEELRQLELQVLTAHSWREKASKTFLKKNSCYTLLEVLCPCADAGSDSTKRSRWMEKELGLYKSDTELLGLSAQDLRDPGSVIVAFKEGEQKEKEGILQLRRTNSAKPSPLASLTTASSTASICVCGQVPAGVGALQCDLCQDWFHGRCVTVPRLLSSQRPGFTSSPLLAWWEWDTKFLCPLCMRSRRPRLETILALLVALQRLPVRLPEGEALQCLTERAISWQGRARQVLASEEVTALLGRLAELRQRLQAESKPEESLAYSSDAGEGAGHIPKIWSYSPHYYHS", "length": 1351, "header": "tr|A0A9J7GK81-1|A0A061HZR2_CRIGR Computationally mapped isoform of Lysine-specific demethylase 5C OS=Cricetulus griseus OX=10029 GN=Kdm5c PE=3 SV=1 CANONICAL=A0A061HZR2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GLY1-1", "url": "https://www.uniprot.org/uniprotkb/A0A061HZR2/entry#A0A9J7GLY1-1", "sequence": { "sequence": "MELGSDDFLPPPECPVFEPSWAEFRDPLGYIAKIRPIAEKSGICKIRPPADWQPPFAVEVDNFRFTPRIQRLNELEAQTRVKLNYLDQIAKFWEIQGSSLKIPNVERRILDLYSLSKIVVEEGGYETICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPYEMYQSGANLVCNTRPFDNEEKDKEYKPHSIPLRQSVQPSKFNSYGRRAKRLQPDPEPTEEDIEKNPELKKLQIYGAGPKMMGLGLMAKDKTLRKKDKEGLECPPTVVVKEELGGDVKMESASPKTFLEGKEELSHSPEPCTKMTMRLRRNHSNAQFIESYVCRMCSRGDEDDKLLLCDGCDDNYHIFCLLPPLPEIPKGVWRCPKCVMAECKRPPEAFGFEQATREYTLQSFGEMADSFKADYFNMPVHMVPTELVEKEFWRLVNSIEEDVTVEYGADIHSKEFGSGFPVSDSKRHLTPEEEEYATSGWNLNVMPVLEQSVLCHINADISGMKVPWLYVGMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPSLAAEHLEEVMKKLTPELFDSQPDLLHQLVTLMNPNTLMSHGVPVVRTNQCAGEFVITFPRAYHSGFNQGYNFAEAVNFCTADWLPAGRQCIEHYRRLRRYCVFSHEELICKMAACPEKLDLNLAAAVHKEMFIMVQEERRLRKALLEKGITEAEREAFELLPDDERQCIKCKTTCFLSALACYDCPDGLVCLSHINDLCKCSSSRQYLRYRYTLDELPAMLHKLKVRAESFDTWANKVRVALEVEDGRKRSLEELRALESEARERRFPNSELLQRLKNCLSEAEACVSRALGLVSGQEAGPDRVAGLQMTLAELRAFLSQMNNLPCAMHQIGDVKGILEQVEAYQSEAREALVSQPSSPGLLQSLLERGQQLGVEVPEAQQLQRQVEQARWLDEVKRTLAPSARRGTLATMRGLLVAGANVAPSPAVDKAQAELQELLTIAERWEEKAHLCLEARQKHPPATLEAIIHEAENIPVHLPNIQSLKEALAKARAWIADVDEIQNGDHYPCLDDLEGLVAVGRDLPVGLEELRQLELQVLTAHSWREKASKTFLKKNSCYTLLEVLCPCADAGSDSTKRSRWMEKELGLYKSDTELLGLSAQDLRDPGSVIVAFKEGEQKEKEGILQLRRTNSAKPSPLASLTTASSTASICVCGQVPAGVGALQCDLCQDWFHGRCVTVPRLLSSQRPGFTSSPLLAWWEWDTKFLCPLCMRSRRPRLETILALLVALQRLPVRLPEGEALQCLTERAISWQGRARQVLASEEVTALLGRLAELRQRLQAESKPEESLAYSSDAGEGAGHIPKVQGLLENGDSVTSPEKVATEEGSGKRDLELLSSLLPQLTGPVLELPEATRAPLEELMMEGDLLEVTLDENHSIWQLLQAGQPPDLERVHTLLELEKAERHGNRTRGRALERRRRRKVDRGGEADDAAREELEPKRVRSSEPEAEEVQEEEELEEETGGEVPPVPFPTNGSPSTQEDQDGLEPVLEAGSDTSAPFSALTSRLLMSCPQQPPRQQL", "length": 1553, "header": "tr|A0A9J7GLY1-1|A0A061HZR2_CRIGR Computationally mapped isoform of Lysine-specific demethylase 5C OS=Cricetulus griseus OX=10029 GN=Kdm5c PE=3 SV=1 CANONICAL=A0A061HZR2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GP88-1", "url": "https://www.uniprot.org/uniprotkb/A0A061HZR2/entry#A0A9J7GP88-1", "sequence": { "sequence": "MELGSDDFLPPPECPVFEPSWAEFRDPLGYIAKIRPIAEKSGICKIRPPADWQPPFAVEVDNFRFTPRIQRLNELEAQTRVKLNYLDQIAKFWEIQGSSLKIPNVERRILDLYSLSKIVVEEGGYETICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPYEMYQSGANLVQCNTRPFDNEEKDKEYKPHSIPLRQSVQPSKFNSYGRRAKRLQPDPEPTEEDIEKNPELKKLQIYGAGPKMMGLGLMAKDKTLRKKDKEGLECPPTVVVKEELGGDVKMESASPKTFLEGKEELSHSPEPCTKMTMRLRRNHSNAQFIESYVCRMCSRGDEDDKLLLCDGCDDNYHIFCLLPPLPEIPKGVWRCPKCVMAECKRPPEAFGFEQATREYTLQSFGEMADSFKADYFNMPVHMVPTELVEKEFWRLVNSIEEDVTVEYGADIHSKEFGSGFPVSDSKRHLTPEEEEYATSGWNLNVMPVLEQSVLCHINADISGMKVPWLYVGMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPSLAAEHLEEVMKKLTPELFDSQPDLLHQLVTLMNPNTLMSHGVPVVRTNQCAGEFVITFPRAYHSGFNQGYNFAEAVNFCTADWLPAGRQCIEHYRRLRRYCVFSHEELICKMAACPEKLDLNLAAAVHKEMFIMVQEERRLRKALLEKGITEAEREAFELLPDDERQCIKCKTTCFLSALACYDCPDGLVCLSHINDLCKCSSSRQYLRYRYTLDELPAMLHKLKVRAESFDTWANKVRVALEVEDGRKRSLEELRALESEARERRFPNSELLQRLKNCLSEAEACVSRALGLVSGQEAGPDRVAGLQMTLAELRAFLSQMNNLPCAMHQIGDVKGILEQVEAYQSEAREALVSQPSSPGLLQSLLERGQQLGVEVPEAQQLQRQVEQARWLDEVKRTLAPSARRGTLATMRGLLVAGANVAPSPAVDKAQAELQELLTIAERWEEKAHLCLEARQKHPPATLEAIIHEAENIPVHLPNIQSLKEALAKARAWIADVDEIQNGDHYPCLDDLEGLVAVGRDLPVGLEELRQLELQVLTAHSWREKASKTFLKKNSCYTLLEIVAFKEGEQKEKEGILQLRRTNSAKPSPLASLTTASSTASICVCGQVPAGVGALQCDLCQDWFHGRCVTVPRLLSSQRPGFTSSPLLAWWEWDTKFLCPLCMRSRRPRLETILALLVALQRLPVRLPEGEALQCLTERAISWQGRARQVLASEEVTALLGRLAELRQRLQAESKPEESLAYSSDAGEGAGHIPKVQGLLENGDSVTSPEKVATEEGSGKRDLELLSSLLPQLTGPVLELPEATRAPLEELMMEGDLLEVTLDENHSIWQLLQAGQPPDLERVHTLLELEKAERHGNRTRGRALERRRRRKVDRGGEADDAAREELEPKRVRSSEPEAEEVQEEEELEEETGGEVPPVPFPTNGSPSTQEDQDGLEPVLEAGSDTSAPFSALTSRLLMSCPQQPPRQQL", "length": 1508, "header": "tr|A0A9J7GP88-1|A0A061HZR2_CRIGR Computationally mapped isoform of Lysine-specific demethylase 5C OS=Cricetulus griseus OX=10029 GN=Kdm5c PE=3 SV=1 CANONICAL=A0A061HZR2-1" }, "locus": {} }, { "isoform_ac": "G3H7U6-1", "url": "https://www.uniprot.org/uniprotkb/A0A061HZR2/entry#G3H7U6-1", "sequence": { "sequence": "MELGSDDFLPPPECPVFEPSWAEFRDPLGYIAKIRPIAEKSGICKIRPPADWQPPFAVEVDNFRFTPRIQRLNELEAQTRVKLNYLDQIAKFWEIQGSSLKIPNVERRILDLYSLSKIVVEEGGYETICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPYEMYQSGANLVQCNTRPFDNEEKDKEYKPHSIPLRQSVQPSKFNSYGRRAKRLQPDPEPTEEDIEKNPELKKLQIYGAGPKMMGLGLMAKDKTLRKKDKEGLECPPTVVVKEELGGDVKMESASPKTFLEGKEELSHSPEPCTKMTMRLRRNHSNAQFIESYVCRMCSRGDEDDKLLLCDGCDDNYHIFCLLPPLPEIPKGVWRCPKCVMAECKRPPEAFGFEQATREYTLQSFGEMADSFKADYFNMPVHMVPTELVEKEFWRLVNSIEEDVTVEYGADIHSKEFGSGFPVSDSKRHLTPEEEEYATSGWNLNVMPVLEQSVLCHINADISGMKVPWLYVGMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPSLAAEHLEEVMKKLTPELFDSQPDLLHQLVTLMNPNTLMSHGVPVVRTNQCAGEFVITFPRAYHSGFNQGYNFAEAVNFCTADWLPAGRQCIEHYRRLRRYCVFSHEELICKMAACPEKLDLNLAAAVHKEMFIMVQEERRLRKALLEKGITEAEREAFELLPDDERQCIKCKTTCFLSALACYDCPDGLVCLSHINDLCKCSSSRQYLRYRYTLDELPAMLHKLKVRAESFDTWANKVRVALEVEDGRKRSLEELRALESEARERRFPNSELLQRLKNCLSEAEACVSRALGLVSGQEAGPDRVAGLQMTLAELRAFLSQMNNLPCAMHQIGDVKGILEQVEAYQSEAREALVSQPSSPGLLQSLLERGQQLGVEVPEAQQLQRQVEQARWLDEVKRTLAPSARRGTLATMRGLLVAGANVAPSPAVDKAQAELQELLTIAERWEEKAHLCLEARQKHPPATLEAIIHEAENIPVHLPNIQSLKEALAKARAWIADVDEIQNGDHYPCLDDLEGLVAVGRDLPVGLEELRQLELQVLTAHSWREKASKTFLKKNSCYTLLEVLCPCADAGSDSTKRSRWMEKELGLYKSDTELLGLSAQDLRDPGSVIVAFKEGEQKEKEGILQLRRTNSAKPSPLASLTTASSTASICVCGQVPAGVGALQCDLCQDWFHGRCVTVPRLLSSQRPGFTSSPLLAWWEWDTKFLCPLCMRSRRPRLETILALLVALQRLPVRLPEGEALQCLTERAISWQGRARQVLASEEVTALLGRLAELRQRLQAESKPEESLAYSSDAGEGAGHIPKVQGLLENGDSVTSPEKVATEEGSDLELLSSLLPQLTGPVLELPEATRAPLEELMMEGDLLEVTLDENHSIWQLLQAGQPPDLERVHTLLELEKAERHGNRTRGRALERRRRRKVDRGGEADDAAREELEPKRVRSSEPEAEEVQEEEELEEETGGEVPPVPFPTNGSPSTQEDQDGLEPVLEAGSDTSAPFSALTSRLLMSCPQQPPRQQL", "length": 1551, "header": "tr|G3H7U6-1|A0A061HZR2_CRIGR Computationally mapped isoform of Lysine-specific demethylase 5C OS=Cricetulus griseus OX=10029 GN=Kdm5c PE=3 SV=1 CANONICAL=A0A061HZR2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [ "enzyme" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3H7U6", "url": "https://www.uniprot.org/uniprotkb/G3H7U6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3H7U6", "url": "https://www.uniprot.org/uniprotkb/G3H7U6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100758549", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100758549", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0ABK0LYB6-1", "protein_name": "Lysine-specific demethylase 5C", "gene_name": "Kdm5c", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MELGSDDFLPPPECPVFEPSWAEFRDPLGYIAKIRPIAEKSGICKIRPPADWQPPFAVEVDNFRFTPRIQRLNELEAQTRVKLNYLDQIAKFWEIQGSSLKIPNVERRILDLYSLSKIVVEEGGYETICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPYEMYQSGANLVQCNTRPFDNEEKDKEYKPHSIPLRQSVQPSKFNSYGRRAKRLQPDPEPTEEDIEKNPELKKLQIYGAGPKMMGLGLMAKDKNLRKKDKEGPECPPTVVVKEELGGDVKMESASPKTFLEGKEELSHSPEPCTKMTMRLRRNHSNAQFIESYVCRMCSRGDEDDKLLLCDGCDDNYHIFCLLPPLPEIPKGVWRCPKCVMAECKRPPEAFGFEQATREYTLQSFGEMADSFKADYFNMPVHMVPTELVEKEFWRLVNSIEEDVTVEYGADIHSKEFGSGFPVSDSKRHLTPEEEEYATSGWNLNVMPVLEQSVLCHINADISGMKVPWLYVGMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPSLAAEHLEEVMKKLTPELFDSQPDLLHQLVTLMNPNTLMSHGVPVVRTNQCAGEFVITFPRAYHSGFNQGYNFAEAVNFCTADWLPAGRQCIEHYRRLRRYCVFSHEELICKMAACPEKLDLNLAAAVHKEMFIMVQEERRLRKALLEKGITEAEREAFELLPDDERQCIKCKTTCFLSALACYDCPDGLVCLSHINDLCKCSSSRQYLRYRYTLDELPAMLHKLKVRAESFDTWANKVRVALEVEDGRKRSLEELRALESEARERRFPNSELLQRLKNCLSEAEACVSRALGLVSGQEAGPDRVAGVQMTLAELQDFLGQMNNLPCAMHQIGDVKGILEQVEAYQTEAREALVSQPSSPGLLQSLLERGQQLGVEVPEAQQLQRQVEQARWLDEVKRTLAPSARRGTLAIMRGLLVAGASVAPSPAVDKAQAELQELLTIAERWEEKAHLCLEARQKHPPATLEAIIHEAENIPVHLPNIQSLKEALAKARAWIADVDEIQNGDHYPCLDDLEGLVAVGRDLPVGLEELRQLELQVLTAHSWREKASKTFLKKNSCYTLLEVLCPCADAGSDSTKRSRWMEKELGLYKSDTELLGLSAQDLRDPGSVIVAFKEGEQKEKEGILQLRRTNSAKPSPLASLTTNSSTASICVCGQVPAGVGALQCDLCQDWFHGRCVTVPRLLSSQRSSLTSSPLLAWWEWDTKFLCPLCMRSRRPRLETILALLVALQRLPVRLPEGEALQCLTERAISWQGRARQVLASEEVTALLGRLAELRQRLQAESKPEESLAYSSDGGDGTGNMPKVQGLLENGDSVTSPEKVATEEGSGKRDLELLSSLLPQLTGPVLELPEATRAPLEELMMEGDLLEVTLDENHSIWQLLQAGQPPDLKRVQTLLELEKAERHGSRTRGRALERRRRRKVDRGGEPDDPAREELEPKRVRSSGPEAEEVQEEEELEEETGGEVPPVPFPNNGSPSTQEDQDGLEPVLDAGSDTSAPFSTLTSRLLMSCPQQPSLQQL", "length": 1554 }, "evidence": [ { "id": "A0A061HZR2", "url": "https://omabrowser.org/oma/group/A0A061HZR2/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "B0S6L0-1", "protein_name": "Lysine-specific demethylase 5D", "gene_name": "kdm5c", "tax_id": 7955, "organism": "Danio rerio", "sequence": { "sequence": "MMDVGEEFVPPPECPVFEPSWEEFADPLGYIAKIRPIAEKSGICKIRPPPDWQPPFAVEVDNFHFTPRIQRLNELEAETRVKLNYLDRIAKFWEIQGSSLKIPNLERRILDLFSLAKIVTEEGGFESVSKERRWARVAQKLGYPPGKNIGSLLRSHYERIVYPFELFQSGASLPPRKPRQYDSDEVDREYKPHSIPLRQSVPPSKMSSYGRRANRLQPEGPEDPTHHPLTTGSQHISSPEPTEEDIEKNPELKKLQIYGAGPKMMGLGLVPRDKTRKKDDLPQTVIVRDSAVKDEPAETAVTKSDPDIPPPPPNLIIKEDVDDDKSHIDKPNDPSDEPCTKMTMRLRRNLNNPQFVDSFVCRMCGRGDEDEKLMLCDGCDDNYHTFCLIPPLTDPPKGNWRCPKCVAEECKKPSEAFGFEQATREYTLQSFGEMADTFKADYFNMPVHMVPTELVEKEFWRLVSSIEEDVTVEYGADIHSKEFGSGFPVNNGKRQLSEEEEEYARSGWNLNVMPVLEQSLLCHINADISGMKVPWLYVGMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPCSAAEKLEEVMKKLTPELFEFQPDLLHQLVTIMNPNILMSHGVPVVRTNQCAGEFVITFPRAYHSGFNQGYNFAEAVNFCTADWLPTGRSCIEHYRQLRRYCVFSQEELTCKMAACPEKLDLNLAAATHREMFIIVQEERKLRKSLLERGIKEAEREAFELLPDDERQCDKCKTTCFLSALACSNCPERLVCLYHAQDLCSCPSEKLYLRYRYTLDELLAMLHRLKVRAESFDSWANRVKEALEQDEGNKIDIKDLEVLKEEAADKKFPNNELLQRLNTVFVDIEKCESCSTELLSNSQSSRMTLKELKTLVDTMQNLPCVIKQQDEVQLILQKIEEFDSRAQVLVDSTKSEWKQDSPLPVATEIQALLEEGASLPVIAPACELLSGLLEQGRWLGEVRRTLGPEGSEVTLTVLRNLMESGCNVPQSVSVETAMAELQELLTIAERWEEKAQICLEDRQKHHLSTLEAIVNEAQLIPVQLPNILSLQACLSRARAWVTDLEEIQNGEHYPCLDDLEGLVAIGRDLPVKMEELKQLELQVASAHSWREKASKTFLKKNSQHSLLEVLCPCVEKSKKMEDNSMVTEADSDVNVLGLTAQDLRDPGAIVMAFKEGERLEKEALLRLQQVNLAKPSIENGVSTDQDSIKTEKKQSNSMETDVPLNSDSPVLQNGGSSHSLTSSQTVCICGGPPRPLLHRCHLCKDWFHGGCVSFPPLLATSDTHLTKPLCWWDWNTRFLCPRCQRSRRPRLETILALLVALQRLPVRLPEGEALQCLTERAINWQGRAKQALDTPEVQEALDRLQQVEDEMVSIKEEEPEEKKKWNGDAVIVLSDSEEAEDGVIDLTEDGNSPKKNERNAVNGTQSGCENGIGRKSSAHEVTGVESLLSLVPSLKGPVVELNTSVRAQLEELQLEGDLLEVTLDQTHAIYRILQASSQPPQDTLRTLIQIELQEQRSSGRGNKSKDSKRKRKSQKTEGEPKSTEASDCKKTKALNLSPPTDTHTDVVMFS", "length": 1578 }, "evidence": [ { "id": "A0A061HZR2", "url": "https://omabrowser.org/oma/group/A0A061HZR2/", "database": "OMA" } ], "glygen_name": "Zebrafish", "common_name": "Zebrafish" }, { "uniprot_canonical_ac": "P41229-1", "protein_name": "Lysine-specific demethylase 5C", "gene_name": "KDM5C", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEPGSDDFLPPPECPVFEPSWAEFRDPLGYIAKIRPIAEKSGICKIRPPADWQPPFAVEVDNFRFTPRIQRLNELEAQTRVKLNYLDQIAKFWEIQGSSLKIPNVERRILDLYSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPYEMYQSGANLVQCNTRPFDNEEKDKEYKPHSIPLRQSVQPSKFNSYGRRAKRLQPDPEPTEEDIEKNPELKKLQIYGAGPKMMGLGLMAKDKTLRKKDKEGPECPPTVVVKEELGGDVKVESTSPKTFLESKEELSHSPEPCTKMTMRLRRNHSNAQFIESYVCRMCSRGDEDDKLLLCDGCDDNYHIFCLLPPLPEIPKGVWRCPKCVMAECKRPPEAFGFEQATREYTLQSFGEMADSFKADYFNMPVHMVPTELVEKEFWRLVNSIEEDVTVEYGADIHSKEFGSGFPVSDSKRHLTPEEEEYATSGWNLNVMPVLEQSVLCHINADISGMKVPWLYVGMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPSLAAEHLEEVMKKLTPELFDSQPDLLHQLVTLMNPNTLMSHGVPVVRTNQCAGEFVITFPRAYHSGFNQGYNFAEAVNFCTADWLPAGRQCIEHYRRLRRYCVFSHEELICKMAACPEKLDLNLAAAVHKEMFIMVQEERRLRKALLEKGITEAEREAFELLPDDERQCIKCKTTCFLSALACYDCPDGLVCLSHINDLCKCSSSRQYLRYRYTLDELPAMLHKLKVRAESFDTWANKVRVALEVEDGRKRSLEELRALESEARERRFPNSELLQQLKNCLSEAEACVSRALGLVSGQEAGPHRVAGLQMTLTELRAFLDQMNNLPCAMHQIGDVKGVLEQVEAYQAEAREALASLPSSPGLLQSLLERGRQLGVEVPEAQQLQRQVEQARWLDEVKRTLAPSARRGTLAVMRGLLVAGASVAPSPAVDKAQAELQELLTIAERWEEKAHLCLEARQKHPPATLEAIIREAENIPVHLPNIQALKEALAKARAWIADVDEIQNGDHYPCLDDLEGLVAVGRDLPVGLEELRQLELQVLTAHSWREKASKTFLKKNSCYTLLEVLCPCADAGSDSTKRSRWMEKELGLYKSDTELLGLSAQDLRDPGSVIVAFKEGEQKEKEGILQLRRTNSAKPSPLASSSTASSTTSICVCGQVLAGAGALQCDLCQDWFHGRCVSVPRLLSSPRPNPTSSPLLAWWEWDTKFLCPLCMRSRRPRLETILALLVALQRLPVRLPEGEALQCLTERAISWQGRARQALASEDVTALLGRLAELRQRLQAEPRPEEPPNYPAAPASDPLREGSGKDMPKVQGLLENGDSVTSPEKVAPEEGSGKRDLELLSSLLPQLTGPVLELPEATRAPLEELMMEGDLLEVTLDENHSIWQLLQAGQPPDLERIRTLLELEKAERHGSRARGRALERRRRRKVDRGGEGDDPAREELEPKRVRSSGPEAEEVQEEEELEEETGGEGPPAPIPTTGSPSTQENQNGLEPAEGTTSGPSAPFSTLTPRLHLPCPQQPPQQQL", "length": 1560 }, "evidence": [ { "id": "A0A061HZR2", "url": "https://omabrowser.org/oma/group/A0A061HZR2/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" }, { "uniprot_canonical_ac": "P41230-1", "protein_name": "Lysine-specific demethylase 5C", "gene_name": "Kdm5c", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MELGSDDFLPPPECPVFEPSWAEFRDPLGYIAKIRPIAEKSGICKIRPPADWQPPFAVEVDNFRFTPRIQRLNELEAQTRVKLNYLDQIAKFWEIQGSSLKIPNVERRILDLYSLSKIVVEEGGYETICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPYEMYQSGANLVQCNTRPFDNEEKDKEYKPHSIPLRQSVQPSKFNSYGRRAKRLQPDPEPTEEDIEKNPELKKLQIYGAGPKMMGLGLMAKDKTLRKKDKEGPECPPTVVVKEELGGDVKMESTSPKTFLEGKEELSHSPEPCTKMTMRLRRNHSNAQFIESYVCRMCSRGDEDDKLLLCDGCDDNYHIFCLLPPLPEIPKGVWRCPKCVMAECKRPPEAFGFEQATREYTLQSFGEMADSFKADYFNMPVHMVPTELVEKEFWRLVNSIEEDVTVEYGADIHSKEFGSGFPVSDSKRHLTPEEEEYATSGWNLNVMPVLEQSVLCHINADISGMKVPWLYVGMVFSAFCWHIEDHWSYSINYLHWGEPKTWYGVPSLAAEHLEEVMKKLTPELFDSQPDLLHQLVTLMNPNTLMSHGVPVVRTNQCAGEFVITFPRAYHSGFNQGYNFAEAVNFCTADWLPAGRQCIEHYRRLRRYCVFSHEELICKMAACPEKLDLNLAAAVHKEMFIMVQEERRLRKALLEKGITEAEREAFELLPDDERQCIKCKTTCFLSALACYDCPDGLVCLSHINDLCKCSSSRQYLRYRYTLDELPAMLHKLKVRAESFDTWANKVRVALEVEDGRKRSLEELRALESEARERRFPNSELLQRLKNCLSEAEACVSRALGLVSGQEAGPDRVAGLQMTLAELRDFLGQMNNLPCAMHQIGDVKGILEQVEAYQTEAREALVSQPSSPGLLQSLLERGQQLGVEVPEAQQLQRQVEQARWLDEVKRTLAPSARRGTLAIMRGLLVAGASVAPSPAVDKAQAELQELLTIAERWEEKAHLCLEARQKHPPATLEAIIHEAENIPVHLPNIQSLKEALAKARAWIADVDEIQNGDHYPCLDDLEGLVAVGRDLPVGLEELRQLELQVLTAHSWREKASKTFLKKNSCYTLLEVLCPCADAGSDSTKRSRWMEKELGLYKSDTELLGLSAQDLRDPGSVIVAFKEGEQKEKEGILQLRRTNSAKPSPLALLTTASSTASICVCGQVPAGVGALQCDLCQDWFHGRCVTVPRLLSSQRSSLPSSPLLAWWEWDTKFLCPLCMRSRRPRLETILALLVALQRLPVRLPEGEALQCLTERAISWQGRARQVLASEEVTALLGRLAELRQRLQAESKPEESLAYPSDGGEGTGNMPKVQGLLENGDSVTSPEKVATEEGSGKRDLELLSSILPQLSGPVLELPEATRAPLEELMMEGDLLEVTLDENHSIWQLLQAGQPPDLKRVQTLLELEKAERHGSRTRGRALERRRRRKVDRGGEPDDPAREELEPKRVRSSGPEAEEVQEEEELEEETGGEVPPVPFPNSGSPSIQEDQDGLEPVLEAGSDTSAPFSTLTSRLLMSCPQQPSLQQL", "length": 1554 }, "evidence": [ { "id": "A0A061HZR2", "url": "https://omabrowser.org/oma/group/A0A061HZR2/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" } ], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 4, "go_terms": [ { "name": "histone H3K4me/H3K4me2/H3K4me3 demethylase activity", "id": "GO:0034647", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0034647", "evidence": [ { "database": "UniProtKB", "id": "A0A061HZR2", "url": "https://www.uniprot.org/uniprotkb/A0A061HZR2" } ], "pmid": "" }, { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A061HZR2", "url": "https://www.uniprot.org/uniprotkb/A0A061HZR2" } ], "pmid": "" }, { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A061HZR2", "url": "https://www.uniprot.org/uniprotkb/A0A061HZR2" } ], "pmid": "" }, { "name": "methyltransferase activity", "id": "GO:0008168", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008168", "evidence": [ { "database": "UniProtKB", "id": "A0A061HZR2", "url": "https://www.uniprot.org/uniprotkb/A0A061HZR2" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A061HZR2", "url": "https://www.uniprot.org/uniprotkb/A0A061HZR2" } ], "pmid": "" }, { "name": "chromatin", "id": "GO:0000785", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000785", "evidence": [ { "database": "UniProtKB", "id": "A0A061HZR2", "url": "https://www.uniprot.org/uniprotkb/A0A061HZR2" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 5, "go_terms": [ { "name": "DNA-templated transcription", "id": "GO:0006351", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006351", "evidence": [ { "database": "UniProtKB", "id": "A0A061HZR2", "url": "https://www.uniprot.org/uniprotkb/A0A061HZR2" } ], "pmid": "" }, { "name": "negative regulation of DNA-templated transcription", "id": "GO:0045892", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0045892", "evidence": [ { "database": "UniProtKB", "id": "A0A061HZR2", "url": "https://www.uniprot.org/uniprotkb/A0A061HZR2" } ], "pmid": "" }, { "name": "rhythmic process", "id": "GO:0048511", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0048511", "evidence": [ { "database": "UniProtKB", "id": "A0A061HZR2", "url": "https://www.uniprot.org/uniprotkb/A0A061HZR2" } ], "pmid": "" }, { "name": "methylation", "id": "GO:0032259", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0032259", "evidence": [ { "database": "UniProtKB", "id": "A0A061HZR2", "url": "https://www.uniprot.org/uniprotkb/A0A061HZR2" } ], "pmid": "" }, { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "A0A061HZR2", "url": "https://www.uniprot.org/uniprotkb/A0A061HZR2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1410, "end_pos": 1412, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1442, "end_pos": 1444, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1508, "end_pos": 1510, "annotation": "n_glycosylation_sequon" }, { "start_pos": 315, "end_pos": 317, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [ { "id": "60208", "name": "", "equation": "N(6),N(6),N(6)-trimethyl-L-lysyl(4)-[histone H3] + 3 2-oxoglutarate + 3 O2 = L-lysyl(4)-[histone H3] + 3 formaldehyde + 3 succinate + 3 CO2", "summary": "", "cellular_location": "", "input_participant_list": [], "output_participant_list": [], "enzyme_list": [ "A0A061HZR2-1", "A0A9J7K0D8-1", "A0A9J7GYJ2-1", "P41228-1" ], "evidence": [ { "id": "60208", "database": "Rhea", "url": "https://www.rhea-db.org/rhea/60208" } ] } ], "reaction_participants": [], "reaction_enzymes": [ { "uniprot_ac": "A0A061HZR2", "gene_name": "Kdm5c", "activity": [ { "ec_number": "1.14.11.67", "activity": "N(6),N(6),N(6)-trimethyl-L-lysyl(4)-[histone H3] + 3 2-oxoglutarate + 3 O2 = L-lysyl(4)-[histone H3] + 3 formaldehyde + 3 succinate + 3 CO2.", "evidence": [ { "id": "A0A061HZR2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061HZR2" } ] }, { "ec_number": "1.14.11.67", "activity": "", "evidence": [ { "id": "A0A061HZR2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061HZR2" } ] } ] }, { "uniprot_ac": "A0A9J7GYJ2", "gene_name": "Kdm5b", "activity": [ { "ec_number": "1.14.11.67", "activity": "N(6),N(6),N(6)-trimethyl-L-lysyl(4)-[histone H3] + 3 2-oxoglutarate + 3 O2 = L-lysyl(4)-[histone H3] + 3 formaldehyde + 3 succinate + 3 CO2.", "evidence": [ { "id": "A0A9J7GYJ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GYJ2" } ] }, { "ec_number": "1.14.11.67", "activity": "", "evidence": [ { "id": "A0A9J7GYJ2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GYJ2" } ] } ] }, { "uniprot_ac": "A0A9J7K0D8", "gene_name": "Kdm5a", "activity": [ { "ec_number": "1.14.11.67", "activity": "N(6),N(6),N(6)-trimethyl-L-lysyl(4)-[histone H3] + 3 2-oxoglutarate + 3 O2 = L-lysyl(4)-[histone H3] + 3 formaldehyde + 3 succinate + 3 CO2.", "evidence": [ { "id": "A0A9J7K0D8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0D8" } ] }, { "ec_number": "1.14.11.67", "activity": "", "evidence": [ { "id": "A0A9J7K0D8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K0D8" } ] } ] }, { "uniprot_ac": "P41228", "gene_name": "KDM5C", "activity": [ { "ec_number": "1.14.11.67", "activity": "N(6),N(6),N(6)-trimethyl-L-lysyl(4)-[histone H3] + 3 2-oxoglutarate + 3 O2 = L-lysyl(4)-[histone H3] + 3 formaldehyde + 3 succinate + 3 CO2.", "evidence": [ { "id": "P41228", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P41228" } ] }, { "ec_number": "1.14.11.67", "activity": "", "evidence": [ { "id": "P41228", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/P41228" } ] } ] } ], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A061HZR2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061HZR2" }, { "id": "PS51011", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51011" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "ARID", "eco_id": "ECO_0000259", "start_pos": 79, "end_pos": 169, "start_aa": "Thr", "end_aa": "Ser", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A061HZR2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061HZR2" }, { "id": "PS51184", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51184" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "JmjC", "eco_id": "ECO_0000259", "start_pos": 468, "end_pos": 634, "start_aa": "Glu", "end_aa": "Arg", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A061HZR2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061HZR2" }, { "id": "PS51183", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51183" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "JmjN", "eco_id": "ECO_0000259", "start_pos": 14, "end_pos": 55, "start_aa": "Cys", "end_aa": "Pro", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A061HZR2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A061HZR2" }, { "id": "PS50016", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50016" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PHD-type", "eco_id": "ECO_0000259", "start_pos": 324, "end_pos": 374, "start_aa": "Ser", "end_aa": "Ala", 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"publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7JFG3-1", "uniprot_ac": "A0A9J7JFG3", "uniprot_id": "A0A9J7JFG3_CRIGR", "mass": { "chemical_mass": 67314.0, "monoisotopic_mass": 67314.0 }, "refseq": { "ac": "XP_007639595", "name": "importin subunit alpha-7 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007639595" }, "gene_names": [ { "name": "Kpna6", "type": "recommended", "evidence": [ { "id": "A0A9J7JFG3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFG3" } ] }, { "name": "Kpna6", "type": "synonym", "evidence": [ { "id": "XP_007639595", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007639595" } ] } ], "protein_names": [ { "name": "Importin subunit alpha-7 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7JFG3", "database": "UniProtKB", "url": 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This record is derived from a genomic sequence (NW_003613801.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 27, 2016 this sequence version replaced XP_007639595.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007639595", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007639595" } ] }, { "annotation": "Functions in nuclear protein import.", "evidence": [ { "database": "UniProtKB", "id": "G3H951", "url": "https://www.uniprot.org/uniprotkb/G3H951#function" }, { "database": "UniProtKB", "id": "PIRNR005673", "url": "https://www.uniprot.org/uniprotkb/PIRNR005673#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JFG3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFG3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Kpna6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFG3", "locus": {} } ], "crossref": [ { "id": "A0A9J7JFG3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JFG3", "database": "AlphaFoldDB", "categories": [] }, { "id": "100754505", "url": "https://www.ncbi.nlm.nih.gov/gene/100754505", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000225", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000225", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR002652", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002652", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR024931", "url": "https://www.ebi.ac.uk/interpro/entry/IPR024931", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR032413", "url": 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Classification", "Other" ] }, { "id": "PF01749", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01749", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF16186", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF16186", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007639595", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007639595", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JFG3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFG3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JFG3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFG3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3H951", "url": "https://www.uniprot.org/uniprotkb/G3H951", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "G3H951-1", "url": "https://www.uniprot.org/uniprotkb/G3H951-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFVPVRPPSCRSAILSAEAAAEATAAAAAKSERAEPRWVSEAARRWVLGLRSWGSGSARACLSSEGDVGSVPIETMASPGKDNYRMKSYKNNALNPEEMRRRREEEGIQLRKQKREQQLFKRRNVELINEEAAMFDSLLMDSYVSSTTGESVITREMVEMLFSDDSDLQLATTQKFRKLLSKEPSPPIDEVINTPGVVDRFVEFLKRSENCTLQFEAAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDYVLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSSDSDLLADACWALSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTGDDIQTQVILNCSALPCLLHLLSSSKESIRKEACWTISNITAGNRAQIQAVIDANIFPVLIEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEGKRSGSGVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGVEDDDSSLAPQVDETQQQFIFQQPEAPMEGFQL", "length": 608, "header": "tr|A0A9J7JFG3-1|A0A9J7JFG3_CRIGR Isoform 1 of Importin subunit alpha-7 isoform X1 OS=Cricetulus griseus OX=10029 GN=Kpna6 PE=3 SV=1 CANONICAL=A0A9J7JFG3-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JFG3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFG3/entry#A0A9J7JFG3-1", "sequence": { "sequence": "MFVPVRPPSCRSAILSAEAAAEATAAAAAKSERAEPRWVSEAARRWVLGLRSWGSGSARACLSSEGDVGSVPIETMASPGKDNYRMKSYKNNALNPEEMRRRREEEGIQLRKQKREQQLFKRRNVELINEEAAMFDSLLMDSYVSSTTGESVITREMVEMLFSDDSDLQLATTQKFRKLLSKEPSPPIDEVINTPGVVDRFVEFLKRSENCTLQFEAAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDYVLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSSDSDLLADACWALSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTGDDIQTQVILNCSALPCLLHLLSSSKESIRKEACWTISNITAGNRAQIQAVIDANIFPVLIEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEGKRSGSGVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGVEDDDSSLAPQVDETQQQFIFQQPEAPMEGFQL", "length": 608, "header": "tr|A0A9J7JFG3-1|A0A9J7JFG3_CRIGR Isoform 1 of Importin subunit alpha-7 isoform X1 OS=Cricetulus griseus OX=10029 GN=Kpna6 PE=3 SV=1 CANONICAL=A0A9J7JFG3-1" }, "locus": {} }, { "isoform_ac": "G3H951-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFG3/entry#G3H951-1", "sequence": { "sequence": "METMASPGKDNYRMKSYKNNALNPEEMRRRREEEGIQLRKQKREQQLFKRRNVELINEEAAMFDSLLMDSYVSSTTGESVITREMVEMLFSDDSDLQLATTQKFRKLLSKEPSPPIDEVINTPGVVDRFVEFLKRSENCTLQFEAAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDYVLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSSDSDLLADACWALSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTGDDIQTQVILNCSALPCLLHLLSSSKESIRKEACWTISNITAGNRAQIQAVIDANIFPVLIEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEGKRSGSGVNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGVEDDDSSLAPQVDETQQQFIFQQPEAPMEGFQL", "length": 536, "header": "tr|G3H951-1|A0A9J7JFG3_CRIGR Computationally mapped isoform of Importin subunit alpha-7 isoform X1 OS=Cricetulus griseus OX=10029 GN=Kpna6 PE=3 SV=1 CANONICAL=A0A9J7JFG3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3H951", "url": "https://www.uniprot.org/uniprotkb/G3H951" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "G3H951", "url": "https://www.uniprot.org/uniprotkb/G3H951" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100754505", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754505", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JFG3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFG3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "protein import into nucleus", "id": "GO:0006606", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006606", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JFG3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFG3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "nuclear import signal receptor activity", "id": "GO:0061608", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0061608", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JFG3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFG3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 210, "end_pos": 212, "annotation": "n_glycosylation_sequon" }, { "start_pos": 279, "end_pos": 281, "annotation": "n_glycosylation_sequon" }, { "start_pos": 406, "end_pos": 408, "annotation": "n_glycosylation_sequon" }, { "start_pos": 434, "end_pos": 436, "annotation": "n_glycosylation_sequon" }, { "start_pos": 476, "end_pos": 478, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], 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automated computational analysis. This record is derived from a genomic sequence (NW_003614752.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007648487", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007648487" } ] }, { "annotation": "Probable transcription factor.", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FV22", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV22#function" }, { "database": "UniProtKB", "id": "ARBA00037260", "url": "https://www.uniprot.org/uniprotkb/ARBA00037260#function" }, { "database": "UniProtKB", "id": "A0A9J7FWX5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWX5#function" }, { "database": "UniProtKB", "id": "A0A9J7FZ56", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZ56#function" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JGX7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGX7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Znf655", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGX7", "locus": {} } ], "crossref": [ { "id": "A0A9J7JGX7", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JGX7", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd07765", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd07765", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100752055", "url": "https://www.ncbi.nlm.nih.gov/gene/100752055", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001909", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001909", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR013087", "url": "https://www.ebi.ac.uk/interpro/entry/IPR013087", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036051", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036051", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036236", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036236", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050169", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050169", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR050758", "url": "https://www.ebi.ac.uk/interpro/entry/IPR050758", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100752055", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752055", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FVI7", "url": "https://www.orthodb.org/?gene=A0A9J7FVI7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7FXZ6", "url": "https://www.orthodb.org/?gene=A0A9J7FXZ6", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JGX7", "url": "https://www.orthodb.org/?gene=A0A9J7JGX7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JPE7", "url": "https://www.orthodb.org/?gene=A0A9J7JPE7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JQ35", "url": "https://www.orthodb.org/?gene=A0A9J7JQ35", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23232", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23232", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23232:SF142", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23232:SF142", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23234", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23234", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23234:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23234:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24393", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24393", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24393:SF100", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24393:SF100", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00096", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00096", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF01352", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF01352", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007648487", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007648487", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FV22", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV22", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FV22-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV22-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FVI7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVI7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FVI7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVI7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FWX5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWX5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FWX5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWX5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FXZ6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXZ6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FXZ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FXZ6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FY41", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FY41", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FY41-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FY41-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FZ56", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZ56", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FZ56-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FZ56-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GTJ0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GTJ0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GTJ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GTJ0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GYW9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GYW9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GYW9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GYW9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JGX7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGX7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JGX7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGX7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JPE7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPE7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JPE7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPE7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JQ35", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQ35", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JQ35-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JQ35-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K7N3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7N3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K7N3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K7N3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MTQAPASGQSRAPRKGWHCSLRRVSVTGQSLGPPLHLGMEETPHEAAGSPRVQFQSLESQSECLSPELSFLQDTEMEQGFTGAPPVPQVPALPHEGSPGDQAAALLTARYQEFVTFEDVAVHLTREEWGCLDPLQRELYREVMLENYGNVVSLGFPVSMPDGISQREQDLQVFDLETKNREVIRDDCSDGETREENKLLIPKRKISEEVHSYKVRVGKFKQNIVQVPETREVYKSEDRLERLQEILRKFLFLEREFRQITISKKNFTSEKNSEPEKSFSLDSTDTDQRVLRIQTIDDSKYDMNFNQNPAVGEQEPLNLTQNFQSSDYKESLMDLSHLNKWENIPATDRSYKCDTCGKTFHQASALTRHQRIHTREKPYKCKECEKSFSQSSSLSRHKRIHTREKSYKCEVSDKSCDVPDKSCSQSSDVLQHKKAHAKAKSYKCGSCERVFSRSVHLTQHQRTHKDTACKCTVCGSDFCHTSYLVEHQRVHHQEKSYEYDECGLAYVKQQGIRFREKPYTCTECGKDFRLNSHLIQHQRIHTGEKLHECNECGKAFSQTSCLIQHHKMHRKEKSYEYNDYEENFSHNSDLTLQQEVPVRESVFDCDAWEENFSQRAHLVQHERIHTKEKPYECNELGETFSQVQASFSM", "length": 648, "header": "tr|A0A9J7JGX7-1|A0A9J7JGX7_CRIGR Isoform 1 of Zinc finger protein 655 isoform X1 OS=Cricetulus griseus OX=10029 GN=Znf655 PE=3 SV=1 CANONICAL=A0A9J7JGX7-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FV22-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGX7/entry#A0A9J7FV22-1", "sequence": { "sequence": "MTQAPASGQSRAPRKGWHCSLRRVSVTGQSLGPPLHLGMEETPHEAAGSPRVQFQSLESQSECLSPELSFLQDTEMEQGFTGDGETREENKLLIPKRKISEEVHSYKVRVGKFKQNIVQVPETREVYKSEDRLERLQEILRKFLFLEREFRQITISKKNFTSEKNSEPEKSFSLDSTDTDQRVLRIQTIDDSKYDMNFNQNPAVGEQEPLNLTQNFQSSDYKESLMDLSHLNKWENIPATDRSYKCDTCGKTFHQASALTRHQRIHTREKPYKCKECEKSFSQSSSLSRHKRIHTREKSYKCEVSDKSCDVPDKSCSQSSDVLQHKKAHAKAKSYKCGSCERVFSRSVHLTQHQRTHKDTACKCTVCGSDFCHTSYLVEHQRVHHQEKSYEYDECGLAYVKQQGIRFREKPYTCTECGKDFRLNSHLIQHQRIHTGEKLHECNECGKAFSQTSCLIQHHKMHRKEKSYEYNDYEENFSHNSDLTLQQEVPVRESVFDCDAWEENFSQRAHLVQHERIHTKEKPYECNELGETFSQVQASFSM", "length": 542, "header": "tr|A0A9J7FV22-1|A0A9J7JGX7_CRIGR Computationally mapped isoform of Zinc finger protein 655 isoform X1 OS=Cricetulus griseus OX=10029 GN=Znf655 PE=3 SV=1 CANONICAL=A0A9J7JGX7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FVI7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGX7/entry#A0A9J7FVI7-1", "sequence": { "sequence": "MEETPHEAAGSPRVQFQSLESQSECLSPELSFLQDTEMEQGFTGAPPVPQVPALPHEGSPGDQAAALLTARYQEFVTFEDVAVHLTREEWGCLDPLQRELYREVMLENYGNVVSLGFPVSMPDGISQREQDLQVFDLETKNREVIRDDCSDGETREENKLLIPKRKISEEVHSYKVRVGKFKQNIVQVPETREVYKSEDRLERLQEILRKFLFLEREFRQITISKKNFTSEKNSEPEKSFSLDSTDTDQRVLRIQTIDDSKYDMNFNQNPAVGEQEPLNLTQNFQSSDYKESLMDLSHLNKWENIPATDRSYKCDTCGKTFHQASALTRHQRIHTREKPYKCKECEKSFSQSSSLSRHKRIHTREKSYKCEVSDKSCDVPDKSCSQSSDVLQHKKAHAKAKSYKCGSCERVFSRSVHLTQHQRTHKDTACKCTVCGSDFCHTSYLVEHQRVHHQEKSYEYDECGLAYVKQQGIRFREKPYTCTECGKDFRLNSHLIQHQRIHTGEKLHECNECGKAFSQTSCLIQHHKMHRKEKSYEYNDYEENFSHNSDLTLQQEVPVRESVFDCDAWEENFSQRAHLVQHERIHTKEKPYECNELGETFSQVQASFSM", "length": 610, "header": "tr|A0A9J7FVI7-1|A0A9J7JGX7_CRIGR Computationally mapped isoform of Zinc finger protein 655 isoform X1 OS=Cricetulus griseus OX=10029 GN=Znf655 PE=3 SV=1 CANONICAL=A0A9J7JGX7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FWX5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGX7/entry#A0A9J7FWX5-1", "sequence": { "sequence": "MTQAPASGQSRAPRKGWHCSLRRVSVTGQSLGPPLHLGMEETPHEAAGSPRVQFQSLESQSECLSPELSFLQDTEMEQGFTGGFPVSMPDGISQREQDLQVFDLETKNREVIRDDCSDGETREENKLLIPKRKISEEVHSYKVRVGKFKQNIVQVPETREVYKSEDRLERLQEILRKFLFLEREFRQITISKKNFTSEKNSEPEKSFSLDSTDTDQRVLRIQTIDDSKYDMNFNQNPAVGEQEPLNLTQNFQSSDYKESLMDLSHLNKWENIPATDRSYKCDTCGKTFHQASALTRHQRIHTREKPYKCKECEKSFSQSSSLSRHKRIHTREKSYKCEVSDKSCDVPDKSCSQSSDVLQHKKAHAKAKSYKCGSCERVFSRSVHLTQHQRTHKDTACKCTVCGSDFCHTSYLVEHQRVHHQEKSYEYDECGLAYVKQQGIRFREKPYTCTECGKDFRLNSHLIQHQRIHTGEKLHECNECGKAFSQTSCLIQHHKMHRKEKSYEYNDYEENFSHNSDLTLQQEVPVRESVFDCDAWEENFSQRAHLVQHERIHTKEKPYECNELGETFSQVQASFSM", "length": 577, "header": "tr|A0A9J7FWX5-1|A0A9J7JGX7_CRIGR Computationally mapped isoform of Zinc finger protein 655 isoform X1 OS=Cricetulus griseus OX=10029 GN=Znf655 PE=3 SV=1 CANONICAL=A0A9J7JGX7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FXZ6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGX7/entry#A0A9J7FXZ6-1", "sequence": { "sequence": "MTQAPASGQSRAPRKGWHCSLRRVSVTGQSLGPPLHLGMEETPHEAAGSPRVQFQSLESQSECLSPELSFLQDTEMEQGFTGGILLRLPTTRIHCVNSCPALSHTQASAFSGETLAVLTAGITKRWPRYRLSIGSAHPCTETPFPRL", "length": 147, "header": "tr|A0A9J7FXZ6-1|A0A9J7JGX7_CRIGR Computationally mapped isoform of Zinc finger protein 655 isoform X1 OS=Cricetulus griseus OX=10029 GN=Znf655 PE=3 SV=1 CANONICAL=A0A9J7JGX7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FY41-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGX7/entry#A0A9J7FY41-1", "sequence": { "sequence": "MTQAPASGQSRAPRKGWHCSLRRVSVTGQSLGPPLHLGMEETPHEAAGSPRVQFQSLESQSECLSPELSFLQDTEMEQGFTGAPPVPQVPALPHEGSPGDQAAALLTARYQAYFSAFPPPGFIV", "length": 124, "header": "tr|A0A9J7FY41-1|A0A9J7JGX7_CRIGR Computationally mapped isoform of Zinc finger protein 655 isoform X1 OS=Cricetulus griseus OX=10029 GN=Znf655 PE=3 SV=1 CANONICAL=A0A9J7JGX7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FZ56-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGX7/entry#A0A9J7FZ56-1", "sequence": { "sequence": "MPDGISQREQDLQVFDLETKNREVIRDDCSDGETREENKLLIPKRKISEEVHSYKVRVGKFKQNIVQVPETREVYKSEDRLERLQEILRKFLFLEREFRQITISKKNFTSEKNSEPEKSFSLDSTDTDQRVLRIQTIDDSKYDMNFNQNPAVGEQEPLNLTQNFQSSDYKESLMDLSHLNKWENIPATDRSYKCDTCGKTFHQASALTRHQRIHTREKPYKCKECEKSFSQSSSLSRHKRIHTREKSYKCEVSDKSCDVPDKSCSQSSDVLQHKKAHAKAKSYKCGSCERVFSRSVHLTQHQRTHKDTACKCTVCGSDFCHTSYLVEHQRVHHQEKSYEYDECGLAYVKQQGIRFREKPYTCTECGKDFRLNSHLIQHQRIHTGEKLHECNECGKAFSQTSCLIQHHKMHRKEKSYEYNDYEENFSHNSDLTLQQEVPVRESVFDCDAWEENFSQRAHLVQHERIHTKEKPYECNELGETFSQVQASFSM", "length": 490, "header": "tr|A0A9J7FZ56-1|A0A9J7JGX7_CRIGR Computationally mapped isoform of Zinc finger protein 655 isoform X1 OS=Cricetulus griseus OX=10029 GN=Znf655 PE=3 SV=1 CANONICAL=A0A9J7JGX7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GTJ0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGX7/entry#A0A9J7GTJ0-1", "sequence": { "sequence": "MTQAPASGQSRAPRKGWHCSLRRVSVTGQSLGPPLHLGMEETPHEAAGSPRVQFQSLESQSECLSPELSFLQDTEMEQGFTGAPPVPQVPALPHEGSPGDQAAALLTARYQEFVTFEDVAVHLTREEWGCLDPLQRELYREVMLENYGNVVSLGILLRLPTTRIHCVNSCPALSHTQDFQFPCLMGSPSGNKIYRSLIWKLRIEKS", "length": 206, "header": "tr|A0A9J7GTJ0-1|A0A9J7JGX7_CRIGR Computationally mapped isoform of Zinc finger protein 655 isoform X1 OS=Cricetulus griseus OX=10029 GN=Znf655 PE=3 SV=1 CANONICAL=A0A9J7JGX7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GYW9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGX7/entry#A0A9J7GYW9-1", "sequence": { "sequence": "MTQAPASGQSRAPRKGWHCSLRRVSVTGQSLGPPLHLGMEETPHEAAGSPRVQFQSLESQSECLSPELSFLQDTEMEQGFTGGVCDIRGCGCASYSRGMGMPGPSSEGALQRSDVRELWKRGFTGHTSPPSHHPDSLCEFLPSPESYPGKCFLWRNTCSPYGRNYQEMAQDFQFPCLMGSPSGNKIYRSLIWKLRIEKS", "length": 199, "header": "tr|A0A9J7GYW9-1|A0A9J7JGX7_CRIGR Computationally mapped isoform of Zinc finger protein 655 isoform X1 OS=Cricetulus griseus OX=10029 GN=Znf655 PE=3 SV=1 CANONICAL=A0A9J7JGX7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JGX7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGX7/entry#A0A9J7JGX7-1", "sequence": { "sequence": "MTQAPASGQSRAPRKGWHCSLRRVSVTGQSLGPPLHLGMEETPHEAAGSPRVQFQSLESQSECLSPELSFLQDTEMEQGFTGAPPVPQVPALPHEGSPGDQAAALLTARYQEFVTFEDVAVHLTREEWGCLDPLQRELYREVMLENYGNVVSLGFPVSMPDGISQREQDLQVFDLETKNREVIRDDCSDGETREENKLLIPKRKISEEVHSYKVRVGKFKQNIVQVPETREVYKSEDRLERLQEILRKFLFLEREFRQITISKKNFTSEKNSEPEKSFSLDSTDTDQRVLRIQTIDDSKYDMNFNQNPAVGEQEPLNLTQNFQSSDYKESLMDLSHLNKWENIPATDRSYKCDTCGKTFHQASALTRHQRIHTREKPYKCKECEKSFSQSSSLSRHKRIHTREKSYKCEVSDKSCDVPDKSCSQSSDVLQHKKAHAKAKSYKCGSCERVFSRSVHLTQHQRTHKDTACKCTVCGSDFCHTSYLVEHQRVHHQEKSYEYDECGLAYVKQQGIRFREKPYTCTECGKDFRLNSHLIQHQRIHTGEKLHECNECGKAFSQTSCLIQHHKMHRKEKSYEYNDYEENFSHNSDLTLQQEVPVRESVFDCDAWEENFSQRAHLVQHERIHTKEKPYECNELGETFSQVQASFSM", "length": 648, "header": "tr|A0A9J7JGX7-1|A0A9J7JGX7_CRIGR Isoform 1 of Zinc finger protein 655 isoform X1 OS=Cricetulus griseus OX=10029 GN=Znf655 PE=3 SV=1 CANONICAL=A0A9J7JGX7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JPE7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGX7/entry#A0A9J7JPE7-1", "sequence": { "sequence": "MTQAPASGQSRAPRKGWHCSLRRVSVTGQSLGPPLHLGMEETPHEAAGSPRVQFQSLESQSECLSPELSFLQDTEMEQGFTGGVCDIRGCGCASYSRGMGMPGPSSEGALQRSDVRELWKRGFTGHTSPPSHHPDSLCEFLPSPESYPGFPVSMPDGISQREQDLQVFDLETKNREVIRDDCSDGETREENKLLIPKRKISEEVHSYKVRVGKFKQNIVQVPETREVYKSEDRLERLQEILRKFLFLEREFRQITISKKNFTSEKNSEPEKSFSLDSTDTDQRVLRIQTIDDSKYDMNFNQNPAVGEQEPLNLTQNFQSSDYKESLMDLSHLNKWENIPATDRSYKCDTCGKTFHQASALTRHQRIHTREKPYKCKECEKSFSQSSSLSRHKRIHTREKSYKCEVSDKSCDVPDKSCSQSSDVLQHKKAHAKAKSYKCGSCERVFSRSVHLTQHQRTHKDTACKCTVCGSDFCHTSYLVEHQRVHHQEKSYEYDECGLAYVKQQGIRFREKPYTCTECGKDFRLNSHLIQHQRIHTGEKLHECNECGKAFSQTSCLIQHHKMHRKEKSYEYNDYEENFSHNSDLTLQQEVPVRESVFDCDAWEENFSQRAHLVQHERIHTKEKPYECNELGETFSQVQASFSM", "length": 643, "header": "tr|A0A9J7JPE7-1|A0A9J7JGX7_CRIGR Computationally mapped isoform of Zinc finger protein 655 isoform X1 OS=Cricetulus griseus OX=10029 GN=Znf655 PE=3 SV=1 CANONICAL=A0A9J7JGX7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JQ35-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGX7/entry#A0A9J7JQ35-1", "sequence": { "sequence": "MTQAPASGQSRAPRKGWHCSLRRVSVTGQSLGPPLHLGMEETPHEAAGSPRVQFQSLESQSECLSPELSFLQDTEMEQGFTGAPPVPQVPALPHEGSPGDQAAALLTARYQEFVTFEDVAVHLTREEWGCLDPLQRELYREVMLENYGNVVSLGILLRLPTTRIHCVNSCPALSHTQASAFSGETLAVLTAGITKRWPRYRLSIGSAHPCTETPFPRL", "length": 218, "header": "tr|A0A9J7JQ35-1|A0A9J7JGX7_CRIGR Computationally mapped isoform of Zinc finger protein 655 isoform X1 OS=Cricetulus griseus OX=10029 GN=Znf655 PE=3 SV=1 CANONICAL=A0A9J7JGX7-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K7N3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGX7/entry#A0A9J7K7N3-1", "sequence": { "sequence": "MTQAPASGQSRAPRKGWHCSLRRVSVTGQSLGPPLHLGMEETPHEAAGSPRVQFQSLESQSECLSPELSFLQDTEMEQGFTGGVCDIRGCGCASYSRGMGMPGPSSEGALQRSDVRELWKRGFTGHTSPPSHHPDSLCEFLPSPESYPGKCFLWRNTCSPYGRNYQEMAQVSAFHR", "length": 176, "header": "tr|A0A9J7K7N3-1|A0A9J7JGX7_CRIGR Computationally mapped isoform of Zinc finger protein 655 isoform X1 OS=Cricetulus griseus OX=10029 GN=Znf655 PE=3 SV=1 CANONICAL=A0A9J7JGX7-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FV22", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV22" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FV22", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FV22" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100752055", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100752055", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JGX7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGX7" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 3, "go_terms": [ { "name": "zinc ion binding", "id": "GO:0008270", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008270", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JGX7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGX7" } ], "pmid": "" }, { "name": "RNA polymerase II cis-regulatory region sequence-specific DNA binding", "id": "GO:0000978", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000978", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JGX7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGX7" } ], "pmid": "" }, { "name": "DNA-binding transcription activator activity, RNA polymerase II-specific", "id": "GO:0001228", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0001228", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JGX7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGX7" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of DNA-templated transcription", "id": "GO:0006355", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006355", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JGX7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGX7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 265, "end_pos": 267, "annotation": "n_glycosylation_sequon" }, { "start_pos": 317, "end_pos": 319, "annotation": "n_glycosylation_sequon" }, { "start_pos": 582, "end_pos": 584, "annotation": "n_glycosylation_sequon" }, { "start_pos": 610, "end_pos": 612, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JGX7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGX7" }, { "id": "PS50157", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50157" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "C2H2-type", "eco_id": "ECO_0000259", "start_pos": 350, "end_pos": 377, "start_aa": "Tyr", "end_aa": "Pro", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7JGX7", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGX7" }, { "id": "PS50805", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50805" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "KRAB", "eco_id": "ECO_0000259", "start_pos": 114, "end_pos": 185, "start_aa": "Val", "end_aa": "Asp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 265, "end_pos": 267 }, { "start_pos": 317, "end_pos": 319 }, { "start_pos": 582, "end_pos": 584 }, { "start_pos": 610, "end_pos": 612 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { 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"authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7JHB5-1", "uniprot_ac": "A0A9J7JHB5", "uniprot_id": "A0A9J7JHB5_CRIGR", "mass": { "chemical_mass": 26452.0, "monoisotopic_mass": 26452.0 }, "refseq": { "ac": "XP_027260333", "name": "B-cell CLL/lymphoma 7 protein family member C isoform X5", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260333" }, "gene_names": [ { "name": "Bcl7c", "type": "recommended", "evidence": [ { "id": "A0A9J7JHB5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JHB5" } ] }, { "name": "Bcl7c", "type": "synonym", "evidence": [ { "id": "XP_027260333", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260333" } ] } ], "protein_names": [ { "name": "B-cell CLL/lymphoma 7 protein family member C isoform X5", "type": "synonym", "evidence": [ { "id": "XP_027260333", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260333" }, { "id": "A0A9J7JHB5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JHB5/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027260333", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260333" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JHB5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JHB5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Bcl7c", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JHB5", "locus": {} } ], "crossref": [ { "id": "A0A9J7JHB5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JHB5", "database": "AlphaFoldDB", "categories": [] }, { "id": "100753452", "url": "https://www.ncbi.nlm.nih.gov/gene/100753452", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR006804", "url": "https://www.ebi.ac.uk/interpro/entry/IPR006804", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100753452", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753452", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JHB5", "url": "https://www.orthodb.org/?gene=A0A9J7JHB5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12767", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12767", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12767:SF10", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12767:SF10", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04714", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04714", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027260333", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260333", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A061I8E3", "url": "https://www.uniprot.org/uniprotkb/A0A061I8E3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A061I8E3-1", "url": "https://www.uniprot.org/uniprotkb/A0A061I8E3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FHV0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHV0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FHV0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHV0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FL27", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FL27", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FL27-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FL27-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JHB5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JHB5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JHB5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JHB5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAGRTVRAETRSRAKDDIKKVMATIEKVRRWEKRWVTVGDTSLRIFKWVPVVDPQEEERRRAGGGTERSRGRERRGRGTSPRGGGPLILLDLNADENSNQSFHSEGSLQKGTEPSPGGTPQPSRPGSPTGPPEAITEDTQPPQLGQERDPGGTPAGGTDDPPKLTKEEPVPELLEAEDSGVRMTRRALQEKALKTEPLRRLLPRRGLRTNARSTSTVPDTRALGGGNKAQRAPRTIPQGKGR", "length": 242, "header": "tr|A0A9J7JHB5-1|A0A9J7JHB5_CRIGR Isoform 1 of B-cell CLL/lymphoma 7 protein family member C isoform X5 OS=Cricetulus griseus OX=10029 GN=Bcl7c PE=3 SV=1 CANONICAL=A0A9J7JHB5-1" }, "isoforms": [ { "isoform_ac": "A0A061I8E3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JHB5/entry#A0A061I8E3-1", "sequence": { "sequence": "MAGRTVRAETRSRAKDDIKKVMATIEKVRRWEKRWVTVGDTSLRIFKWVPVVDPQEEERRRAGGGTERSRGRERRGRGTSPRGGGPLILLDLNDENSNQSFHSEGSLQKGTEPSPGGTPQPSRPGSPTGPPEAITEDTQPPQLGQERDPGGTPAGGTDDPPKLTKEEPVPELLEAEAPEAYPVFEPVPPVPEAAQGDTEDSEGAPPLKRICPNAPDP", "length": 217, "header": "tr|A0A061I8E3-1|A0A9J7JHB5_CRIGR Computationally mapped isoform of B-cell CLL/lymphoma 7 protein family member C isoform X5 OS=Cricetulus griseus OX=10029 GN=Bcl7c PE=3 SV=1 CANONICAL=A0A9J7JHB5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FHV0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JHB5/entry#A0A9J7FHV0-1", "sequence": { "sequence": "MAGRTVRAETRSRAKDDIKKVMATIEKVRRWEKRWVTVGDTSLRIFKWVPVVDPQEEERRRAGGGTERSRGRERRGRGTSPRGGGPLILLDLNDENSNQSFHSEGSLQKGTEPSPGGTPQPSRPGSPTGPPEAITEDTQPPQLGQERDPGGTPAGGTDDPPKLTKEEPVPELLEAEDSGVRMTRRALQEKALKTEPLRRLLPRRGLRTNARSTSTVPDTRALGGGNKAQRAPRTIPQGKGR", "length": 241, "header": "tr|A0A9J7FHV0-1|A0A9J7JHB5_CRIGR Computationally mapped isoform of B-cell CLL/lymphoma 7 protein family member C isoform X5 OS=Cricetulus griseus OX=10029 GN=Bcl7c PE=3 SV=1 CANONICAL=A0A9J7JHB5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FL27-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JHB5/entry#A0A9J7FL27-1", "sequence": { "sequence": "MAGRTVRAETRSRAKDDIKKVMATIEKVRRWEKRWVTVGDTSLRIFKWVPVVDPQEEERRRAGGGTERSRGRERRGRGTSPRGGGPLILLDLNADENSNQSFHSEGSLQKGTEPSPGGTPQPSRPGSPTGPPEAITEDTQPPQLGQERDPGGTPAGGTDDPPKLTKEEPVPELLEAEAPEAYPVFEPVPPVPEAAQGDTEDSEGAPPLKRICPNAPDP", "length": 218, "header": "tr|A0A9J7FL27-1|A0A9J7JHB5_CRIGR Computationally mapped isoform of B-cell CLL/lymphoma 7 protein family member C isoform X5 OS=Cricetulus griseus OX=10029 GN=Bcl7c PE=3 SV=1 CANONICAL=A0A9J7JHB5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JHB5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JHB5/entry#A0A9J7JHB5-1", "sequence": { "sequence": 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This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027259364", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259364" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JGP7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGP7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Osgin2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGP7", "locus": {} } ], "crossref": [ { "id": "A0A9J7JGP7", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JGP7", "database": "AlphaFoldDB", "categories": [] }, { "id": "100752524", "url": "https://www.ncbi.nlm.nih.gov/gene/100752524", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029731", 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"MPVWCCRCSLAGHFRFYLRKLQCLRDYSDTETEGEIFNSLVQYFGDNLGPKVKGMPLVEETSLLEDSSVTLPVVIIGNGPSGICLSYMLSGYRPYLSSEAIHPNTILHSKLEEARHLSIVDQDLEYLSEGLEGRSSNPVAVLFDTLLHPDADFGYDYPSILHWKLEQHHYIPHLVLGKGPPGGAWNNMEGSMLTISFGNWMELPGLKFKDWMSSKRRNLKGDRVMPEEIARYYKHYVNVMGLQKNFRENTYITSVSRLYRDQGDNGSQDKDISTKHLQNQKSKFVKRNWEIRGYQRIAGGSHVPFCLFAENVALATGTLDSPAHLEVEGEELPFVFHSMPEFGAAINKRKLCGRADPVLIVGSGLTAADAVLCAYNNNIPVIHVFRRRVTDPSLIFKQLPQKLYPEYHKVYHMMCTQTYSADSDPSSDYTSFPEHRVLSFKSDMKCILQSVSGLKKIFKLSAAVVLIGSHPNLSFLKEQGCYLGHNSSQPITCKGNPVEVDAYTYECVKEANLFALGPLVGDNFVRFLKGGALGVTRCLATRQKKKQHLFVERGGGDGIA", "length": 560, "header": "tr|A0A9J7JGP7-1|A0A9J7JGP7_CRIGR Isoform 1 of Oxidative stress-induced growth inhibitor 2 isoform X2 OS=Cricetulus griseus OX=10029 GN=Osgin2 PE=4 SV=1 CANONICAL=A0A9J7JGP7-1" }, "isoforms": [ { "isoform_ac": "A0A061IGA4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGP7/entry#A0A061IGA4-1", "sequence": { "sequence": 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"https://www.ebi.ac.uk/QuickGO/term/GO:0008083", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JGP7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGP7" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 265, "end_pos": 267, "annotation": "n_glycosylation_sequon" }, { "start_pos": 472, "end_pos": 474, "annotation": "n_glycosylation_sequon" }, { "start_pos": 486, "end_pos": 488, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 265, "end_pos": 267 }, { "start_pos": 472, "end_pos": 474 }, { "start_pos": 486, "end_pos": 488 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7JGB5-1", "uniprot_ac": "A0A9J7JGB5", "uniprot_id": "A0A9J7JGB5_CRIGR", "mass": { "chemical_mass": 82568.0, "monoisotopic_mass": 82568.0 }, "refseq": { "ac": "XP_007644200", "name": "uncharacterized protein KIAA1958 homolog isoform X4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007644200" }, "gene_names": [ { "name": "Kiaa1958", "type": "recommended", "evidence": [ { "id": "A0A9J7JGB5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGB5" } ] }, { "name": "Kiaa1958", "type": "synonym", "evidence": [ { "id": "XP_007644200", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007644200" } ] } ], "protein_names": [ { "name": "Uncharacterized protein KIAA1958 homolog isoform X4", "type": "synonym", "evidence": [ { "id": "A0A9J7JGB5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGB5/entry#names_and_taxonomy" } ] }, { "name": "uncharacterized protein KIAA1958 homolog isoform X4", "type": "synonym", "evidence": [ { "id": "XP_007644200", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007644200" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614157.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007644200", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007644200" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JGB5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGB5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Kiaa1958", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGB5", "locus": {} } ], "crossref": [ { "id": "A0A9J7JGB5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JGB5", "database": "AlphaFoldDB", "categories": [] }, { "id": "100769984", "url": "https://www.ncbi.nlm.nih.gov/gene/100769984", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR021893", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021893", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042838", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042838", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100769984", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769984", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "YWCVTNG", "url": "https://omabrowser.org/oma/group/YWCVTNG/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A061IJM7", "url": "https://www.orthodb.org/?gene=A0A061IJM7", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A8C2LFR0", "url": "https://www.orthodb.org/?gene=A0A8C2LFR0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JGB5", "url": "https://www.orthodb.org/?gene=A0A9J7JGB5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR46963", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46963", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR46963:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR46963:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12012", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12012", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007644200", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007644200", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A061IJM7", "url": "https://www.uniprot.org/uniprotkb/A0A061IJM7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A061IJM7-1", "url": "https://www.uniprot.org/uniprotkb/A0A061IJM7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LFR0", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LFR0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LFR0-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LFR0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JGB5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGB5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JGB5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGB5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K4W8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4W8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K4W8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4W8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MEDCLHTSSENLSKLVSWAHSHGTICSLIPNLKHLLSEGSHGNLTAMWGCSAGHAYHWPLTATCRAGSQERVCFQDNRSFNSDSPSIIGVPSETQTSPVERYPGRPVKAKLDCNRTRDSCDFSYCSEPSELDEAVEEYEDENTLFDMVCESSVTDEDSDFEPQTQRPQSIARKRPGIVPSSIHSGSQGQMVDECSNDVIIKKIKQEIPEDYYIVANAELTGGVDGPALSLTQMAKPKLQTHAGPSCVGSAKLIPHVTSAISAELDPHIMSASPSVISRPIIPKTARVSLASPNRGPPGAHGTAHQVTMQMPVSTSHPNKQISIPLSALQLPGQDEQVVSEEFLPHLPSQVSSCEVALSPSVNTEPEVSSSQQQPPIAPTITTEATAQCIPDQDERAAELSREQNEKTIRSTQTALRNFPYSTKLNKFPVFNINDDLNDLCTSAVSPNTTKATRYALNVWRYWCMTNGLKDHTDITKIPAVKLNELLENFYVTVKKSDGSDFLATSLHAIRRGLDRILKNAGVGFSITSSTFSSSTKKLKEKLWVLSKAGMSGARSRNIVYFSLSDEEEMWQAGCLGDDSPITLLSTVVKYNSQYLNMRTLQEHADLMYGDIELLKDPQNQPYFARTDSVKRESRSGSTRVCHGKIYHEHSRGHKQCPYCLLYKYMYIHRPPTQMDAKSPFYLTARKEATDMGNVWYEEQRMGLRSLRGIVPNLARKVKLDNCENFTFVSFTQVSRRLSSHSCCQ", "length": 744, "header": "tr|A0A9J7JGB5-1|A0A9J7JGB5_CRIGR Isoform 1 of Uncharacterized protein KIAA1958 homolog isoform X4 OS=Cricetulus griseus OX=10029 GN=Kiaa1958 PE=4 SV=1 CANONICAL=A0A9J7JGB5-1" }, "isoforms": [ { "isoform_ac": "A0A061IJM7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGB5/entry#A0A061IJM7-1", "sequence": { "sequence": "MEDCLHTSSENLSKLVSWAHSHGTICSLIPNLKHLLSEGSHGNLTAMWGCSAGHAYHWPLTATCRAGSQERVCFQDNRSFNSDSPSIIGVPSETQTSPVERYPGRPVKAKLDCNRTRDSCDFSYCSEPSELDEAVEEYEDENTLFDMVCESSVTDEDSDFEPQTQRPQSIARKRPGIVPSSIHSGSQGQMVDECSNDVIIKKIKQEIPEDYYIVANAELTGGVDGPALSLTQMAKPKLQTHAGPSCVGSAKLIPHVTSAISAELDPHIMSASPSVISRPIIPKTARVSLASPNRGPPGAHGTAHQVTMQMPVSTSHPNKQISIPLSALQLPGQDEQVVSEEFLPHLPSQVSSCEVALSPSVNTEPEVSSSQQQPPIAPTITTEATAQCIPDQDERAAELSREQNEKTIRSTQTALRNFREFLISKYPSETREIYVIPCKELDAYLASFFVDARQKDGSEYEPNSLANYQCGLERYLKEHRYGYSITRDKEFKRSQEALKQKQIELRCKGKGNKPHKSMKLTFADELILRKRGLLSRYNPEGLLNLVWLNNTKAFGHCTGFHGSTLKWGDIRLRVTETGLEYLEWMGQDTGDLNAKTKRGGTDSRVYATQHAPQTCPVQDYKEYAQRRPPAMRYEDAPFYLSIKPVVNLAALHWYNCQALGKNKLAKMVKTMCEKGNIPGRKTNFSVYQSCSTLSEAQSNQLVLICNNLSQQAAQSVAGHSNSSNFIVSSYDSSSDTA", "length": 737, "header": "tr|A0A061IJM7-1|A0A9J7JGB5_CRIGR Computationally mapped isoform of Uncharacterized protein KIAA1958 homolog isoform X4 OS=Cricetulus griseus OX=10029 GN=Kiaa1958 PE=4 SV=1 CANONICAL=A0A9J7JGB5-1" }, "locus": {} }, { "isoform_ac": "A0A8C2LFR0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGB5/entry#A0A8C2LFR0-1", "sequence": { "sequence": "MEDCLHTSSENLSKLVSWAHSHGTICSLIPNLKHLLSEGSHGNLTAMWGCSAGHAYHWPLTATCRAGSQERVCFQDNRSFNSDSPSIIGVPSETQTSPVERYPGRPVKAKLDCNRTRDSCDFSYCSEPSELDEAVEEYEDENTLFDMVCESSVTDEDSDFEPQTQRPQSIARKRPGIVPSSIHSGSQGQMVDECSNDVIIKKIKQEIPEDYYIVANAELTGGVDGPALSLTQMAKPKLQTHAGPSCVGSAKLIPHVTSAISAELDPHIMSASPSVISRPIIPKTARVSLASPNRGPPGAHGTAHQVTMQMPVSTSHPNKQISIPLSALQLPGQDEQVVSEEFLPHLPSQVSSCEVALSPSVNTEPEVSSSQQQPPIAPTITTEATAQCIPAYSTKLNKFPVFNINDDLNDLCTSAVSPNTTKATRYALNVWRYWCMTNGLKDHTDITKIPAVKLNELLENFYVTVKKSDGSDFLATSLHAIRRGLDRILKNAGVGFSITSSTFSSSTKKLKEKLWVLSKAGMSGARSRNIVYFSLSDEEEMWQAGCLGDDSPITLLSTVVKYNSQYLNMRTLQEHADLMYGDIELLKDPQNQPYFARTDSVKRESRSGSTRVCHGKIYHEHSRGHKQCPYCLLYKYMYIHRPPTQMDAKSPFYLTARKEATDMGNVWYEEQRMGLRSLRGIVPNLARKVKLDNCENFTFVSFTQVSRRLSSHSCCQ", "length": 716, "header": "tr|A0A8C2LFR0-1|A0A9J7JGB5_CRIGR Computationally mapped isoform of Uncharacterized protein KIAA1958 homolog isoform X4 OS=Cricetulus griseus OX=10029 GN=Kiaa1958 PE=4 SV=1 CANONICAL=A0A9J7JGB5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JGB5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGB5/entry#A0A9J7JGB5-1", "sequence": { "sequence": "MEDCLHTSSENLSKLVSWAHSHGTICSLIPNLKHLLSEGSHGNLTAMWGCSAGHAYHWPLTATCRAGSQERVCFQDNRSFNSDSPSIIGVPSETQTSPVERYPGRPVKAKLDCNRTRDSCDFSYCSEPSELDEAVEEYEDENTLFDMVCESSVTDEDSDFEPQTQRPQSIARKRPGIVPSSIHSGSQGQMVDECSNDVIIKKIKQEIPEDYYIVANAELTGGVDGPALSLTQMAKPKLQTHAGPSCVGSAKLIPHVTSAISAELDPHIMSASPSVISRPIIPKTARVSLASPNRGPPGAHGTAHQVTMQMPVSTSHPNKQISIPLSALQLPGQDEQVVSEEFLPHLPSQVSSCEVALSPSVNTEPEVSSSQQQPPIAPTITTEATAQCIPDQDERAAELSREQNEKTIRSTQTALRNFPYSTKLNKFPVFNINDDLNDLCTSAVSPNTTKATRYALNVWRYWCMTNGLKDHTDITKIPAVKLNELLENFYVTVKKSDGSDFLATSLHAIRRGLDRILKNAGVGFSITSSTFSSSTKKLKEKLWVLSKAGMSGARSRNIVYFSLSDEEEMWQAGCLGDDSPITLLSTVVKYNSQYLNMRTLQEHADLMYGDIELLKDPQNQPYFARTDSVKRESRSGSTRVCHGKIYHEHSRGHKQCPYCLLYKYMYIHRPPTQMDAKSPFYLTARKEATDMGNVWYEEQRMGLRSLRGIVPNLARKVKLDNCENFTFVSFTQVSRRLSSHSCCQ", "length": 744, "header": "tr|A0A9J7JGB5-1|A0A9J7JGB5_CRIGR Isoform 1 of Uncharacterized protein KIAA1958 homolog isoform X4 OS=Cricetulus griseus OX=10029 GN=Kiaa1958 PE=4 SV=1 CANONICAL=A0A9J7JGB5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K4W8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGB5/entry#A0A9J7K4W8-1", "sequence": { "sequence": "MEDCLHTSSENLSKLVSWAHSHGTICSLIPNLKHLLSEGSHGNLTAMWGCSAGHAYHWPLTATCRAGSQERVCFQDNRSFNSDSPSIIGVPSETQTSPVERYPGRPVKAKLDCNRTRDSCDFSYCSEPSELDEAVEEYEDENTLFDMVCESSVTDEDSDFEPQTQRPQSIARKRPGIVPSSIHSGSQGQMVDECSNDVIIKKIKQEIPEDYYIVANAELTGGVDGPALSLTQMAKPKLQTHAGPSCVGSAKLIPHVTSAISAELDPHIMSASPSVISRPIIPKTARVSLASPNRGPPGAHGTAHQVTMQMPVSTSHPNKQISIPLSALQLPGQDEQVVSEEFLPHLPSQVSSCEVALSPSVNTEPEVSSSQQQPPIAPTITTEATAQCIPAYSTKLNKFPVFNINDDLNDLCTSAVSPNTTKATRYALNVWRYWCMTNGLKDHTDITKKGTNWKS", "length": 455, "header": "tr|A0A9J7K4W8-1|A0A9J7JGB5_CRIGR Computationally mapped isoform of Uncharacterized protein KIAA1958 homolog isoform X4 OS=Cricetulus griseus OX=10029 GN=Kiaa1958 PE=4 SV=1 CANONICAL=A0A9J7JGB5-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A061IJM7", "url": "https://www.uniprot.org/uniprotkb/A0A061IJM7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A061IJM7", "url": "https://www.uniprot.org/uniprotkb/A0A061IJM7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100769984", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100769984", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "E1BMJ6-1", "protein_name": "KIAA1958", "gene_name": "KIAA1958", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MEDCLHTSSENLSKLVSWAHSHGTICSLIPNLKHLLSEGSHGNLTAMWGCSAGHAYHWPLTATCRAGSQERVCFQDNRSFNSDSPSIIGVPSETQTSPVERYPGRPVKTKLDCNRTRDSCDFSYCSEPSELDEAVEEYEDENTLFDMVCESSVTDEDSDFEPQPQRPQSIARKRPGIVPSSLHSSSQTQMIDECSSDVIIKKIKQEIPEDYYIVANAELTGGVDGPALSLTQMAKPKSQTHAGPSLGSAKLISHVTSAISSELDPHGVSASPSVMSRPVVQKTTRVSLASPNRGPPSSHGTSQHVAMQMPVSTSHPNKQISIPLSALQLPGQDEQVASEEFLSHLPSQVSSCEVALSPSVNTEPEVSSSQQQPPVAPTITTEATAQCIPAYSTKLNKFPVFNINDDLNDLCTSAVSPNTTKATRYALNVWRYWCMTNGLKDHTDITKIPAVKLNELLENFYVTVKKSDGSDFLATSLHAIRRGLDRILKNAGVGFSITSSTFSSSTKKLKEKLWVLSKAGMSGARSRNIVYFSVSDEEEMWQTGCLGDDSPITLLSTVVKYNSQYLNMRTLQEHADLMYGDIELLTDPQNHSYFARTDSVKRESRSASTRVCHGKIYHEHSRGHKQCPYCLLYKYMYVHRPPTQMEAKSPFYLTARKEAADMGRVWYEEQRMGLRSLRGVVPNLAKKVKLENCENFTFVSFTQVSRRLSSHSCCQ", "length": 715 }, "evidence": [ { "id": "A0A9J7JGB5", "url": "https://omabrowser.org/oma/group/A0A9J7JGB5/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "F1SNA7-1", "protein_name": "KIAA1958", "gene_name": "KIAA1958", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MEDCLHTSSENLSKLVSWAHSHGTICSLIPNLKHLLSEGSHGNLTAMWGCSAGHAYHWPLTATCRAGSQERVCFQDNRSFNSDSPSIIGVPSETQTSPVERYPGRPVKAKLDCNRTRDSCDFSYCSEPSELDEAVEEYEDENTLFDMVCESSVTDEDSDFEPQTQRPQSITRKRPGIVPSSLHSSSQAQMIDECSSDVIIKKIKQEIPEDYYIVANAELTGGVDGPALSLTQMAKPKPQTHAGPSCIGSAKLIPHVTSAISTELDPHGMSASPSVMSRPIIQKTARVSLASPNRGPPGAHGTNQQVAMQMPVSTSHPNKQISIPLSALQLPGQDEQVASEEFLSHLPSQVSSCEVALSPSVNTEPEVSSSQQQPPVAPTITTEATAQCIPAYSTKLNKFPVFNINDDLNDLCTSAVSPNTTKATRYALNVWRYWCMTNGLKDHTDITKIPAVKLNELLENFYVTVKKSDGSDFLATSLHAIRRGLDRILKNAGVGFSITSSTFSSSTKKLKEKLWVLSKAGMSGARSRNIVYFSLSDEEEMWQAGCLGDDSPITLLSTVVKYNSQYLNMRTLQEHADLMYGDIELLKDPQNQPYFARTDSVKRESRSGSTRVCHGKIYHEHSRGHKQCPYCLLYKYMYIHRPPTQMDAKSPFYLTARKEATDLGSVWYEDQRMGLRSLRGIVPNLAKKVKLENCENFTFVSFTQVSRRLGSHSCCQ", "length": 716 }, "evidence": [ { "id": "A0A9J7JGB5", "url": "https://omabrowser.org/oma/group/A0A9J7JGB5/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "Q8C4P0-1", "protein_name": "Uncharacterized protein KIAA1958 homolog", "gene_name": "", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MEDCLHTSSENLSKLVSWAHSHGTICSLIPNLKHLLSEGSHGNLTAMWGCSAGHAYHWPLTATCRAGSQERVCFQDNRSFNSDSPSIIGVPSETQTSPVERYPGRPVKAKLDCNRTRDSCDFSYCSEPSELDEAVEEYEDENTLFDMVCESSVTDEDSDFEPQTQRPQSIARKRPGIVPSSIHSSSQGQMVDECSNDVIIKKIKQEIPEDYYIVANAELTGGVDGPALSLTQMAKPKPQTHAGPSCVGSAKLIPHVTSAINTELDPHILSASPSVISRPIIPKTARVSLASPNRGPPGAHGTAHQVTMQMPVSTSHPNKQISIPLSALQLPGQDEQVASEEFLPHLPSQVSSCEVALSPSVNTEPEVSSSQQQPPAAPTITTEATAQCIPAYSTKLNKFPVFNINDDLNGLCTSAVSPNTTKATRYALNVWRYWCMTNGLKDHTDITKIPAVKLNELLENFYVTVKKSDGSDFLATSLHAIRRGLDRILKNAGVGFSITSSTFSSSTKKLKEKLWVLSKAGMSGARSRNIVYFSLSDEEEMWQAGCLGDDSPITLLSTVVKYNSQYLNMRTLQEHADLMYGDIELLKDPQNQPYFARTDSVKRESRSGSTRVCHGKIYHEHSRGHKQCPYCLLYKYMYIHRPPTQMEAKSPFYLTARKEATDMGSVWYEEQRMGLRSLRGIVPNLARKVKLENCENFTFVSFTQVSRRLGSHSCCQ", "length": 716 }, "evidence": [ { "id": "A0A9J7JGB5", "url": "https://omabrowser.org/oma/group/A0A9J7JGB5/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q8N8K9-1", "protein_name": "Uncharacterized protein KIAA1958", "gene_name": "KIAA1958", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MEDCLHTSSENLSKLVSWAHSHGTICSLIPNLKHLLSEGSHGNLTAMWGCSAGHAYHWPLTATCRAGSQERVCFQDNRSFNSDSPSIIGVPSETQTSPVERYPGRPVKAKLDCNRTRDSCDFSYCSEPSELDETVEEYEDENTLFDMVCESSVTDEDSDFEPQTQRPQSIARKRPGVVPSSLHSSSQTQMVDECSNDVIIKKIKQEIPEDYYIVANAELTGGVDGPALSLTQMAKPKPQTHAGPSCVGSAKLIPHVTSAISTELDPHGMSASPSVISRPIVQKTARVSLASPNRGPPGTHGTNQQVAMQMPVSTSHPNKQISIPLSALQLPGQDEQVASEEFLSHLPSQVSSCEVALSPSVNTEPEVSSSQQQPPVAPAITTEATAQCIPAYSTKLNKFPVFNINDDLNDLCTSAVSPNTTKATRYALNVWRYWCMTNGLKDHTDITKIPAVKLNELLENFYVTVKKSDGSDFLATSLHAIRRGLDRILKNAGVGFSITSSTFSSSTKKLKEKLWVLSKAGMSGARSRNIVYFSLSDEEEMWQAGCLGDDSPITLLSTVVKYNSQYLNMRTLQEHADLMYGDIELLKDPQNQPYFARTDSVKRESRSGSTRVCHGKIYHEHSRGHKQCPYCLLYKYMYIHRPPTQMEAKSPFYLTARKEATDMGSVWYEEQRMGLRSLRGIVPNLAKKVKLENCENFTFVSFTQVSRRLGSHSCCQ", "length": 716 }, "evidence": [ { "id": "A0A9J7JGB5", "url": "https://omabrowser.org/oma/group/A0A9J7JGB5/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": {}, "pro_annotation": [], "site_annotation": [ { "start_pos": 114, "end_pos": 116, "annotation": "n_glycosylation_sequon" }, { "start_pos": 11, "end_pos": 13, "annotation": "n_glycosylation_sequon" }, { "start_pos": 43, "end_pos": 45, "annotation": "n_glycosylation_sequon" }, { "start_pos": 447, "end_pos": 449, "annotation": "n_glycosylation_sequon" }, { "start_pos": 724, "end_pos": 726, "annotation": "n_glycosylation_sequon" }, { "start_pos": 77, "end_pos": 79, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JGB5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGB5" }, { "id": "PF12012", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12012" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "ZMYM2-like/QRICH1 C-terminal", "eco_id": "ECO_0000259", "start_pos": 560, "end_pos": 713, "start_aa": "Tyr", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 114, "end_pos": 116 }, { "start_pos": 11, "end_pos": 13 }, { "start_pos": 43, "end_pos": 45 }, { "start_pos": 447, "end_pos": 449 }, { "start_pos": 724, "end_pos": 726 }, { "start_pos": 77, "end_pos": 79 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": 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}, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { 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] }, { "uniprot_canonical_ac": "A0A9J7JGI3-1", "uniprot_ac": "A0A9J7JGI3", "uniprot_id": "A0A9J7JGI3_CRIGR", "mass": { "chemical_mass": 19097.0, "monoisotopic_mass": 19097.0 }, "refseq": { "ac": "XP_027259100", "name": "C-C motif chemokine 27 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259100" }, "gene_names": [ { "name": "Ccl27", "type": "recommended", "evidence": [ { "id": "A0A9J7JGI3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGI3" } ] }, { "name": "Ccl27", "type": "synonym", "evidence": [ { "id": "XP_027259100", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259100" } ] } ], "protein_names": [ { "name": "C-C motif chemokine 27 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027259100", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259100" }, { "id": "A0A9J7JGI3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGI3/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027259100", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259100" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JGI3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGI3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ccl27", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGI3", "locus": {} } ], "crossref": [ { "id": "A0A9J7JGI3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JGI3", "database": "AlphaFoldDB", "categories": [] }, { "id": "100770725", "url": "https://www.ncbi.nlm.nih.gov/gene/100770725", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001811", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001811", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100770725", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770725", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JGI3", "url": "https://www.orthodb.org/?gene=A0A9J7JGI3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PF00048", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00048", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027259100", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259100", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2LVI5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LVI5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LVI5-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LVI5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FFL7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFL7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FFL7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFL7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FG70", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FG70", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FG70-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FG70-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FJF8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJF8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FJF8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJF8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JGI3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGI3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JGI3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGI3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MSRLRRYEVALEAEEEIYWGCFYFFPWLRMWRRERSQKLSLETTRLPLTSWQPWNKTKQKQEALPLPSSTTCCTQLYRQPLPNKLLRKITHVELQEADGDCHLQAIVLHLAQRSVCVHPQNRSLARWFERHRKRLQETISNLNLELQMKMYSSPQQQN", "length": 158, "header": "tr|A0A9J7JGI3-1|A0A9J7JGI3_CRIGR Isoform 1 of C-C motif chemokine 27 isoform X2 OS=Cricetulus griseus OX=10029 GN=Ccl27 PE=3 SV=1 CANONICAL=A0A9J7JGI3-1" }, "isoforms": [ { "isoform_ac": "A0A8C2LVI5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGI3/entry#A0A8C2LVI5-1", "sequence": { "sequence": "MEGLSPTSSLLLILLLLSPDPGAALPLPSSTTCCTQLYRQPLPNKLLRKITHVELQEADGDCHLQAIVLHLAQRSVCVHPQNRSLARWFERHRKRLQETISNLNLELQMKMYSSPQQQN", "length": 119, "header": "tr|A0A8C2LVI5-1|A0A9J7JGI3_CRIGR Computationally mapped isoform of C-C motif chemokine 27 isoform X2 OS=Cricetulus griseus OX=10029 GN=Ccl27 PE=3 SV=1 CANONICAL=A0A9J7JGI3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FFL7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGI3/entry#A0A9J7FFL7-1", "sequence": { "sequence": "MSRLRRYEVALEAEEEIYWGCFYFFPWLRMWRRERSSAHPREQKLEPLRGLMSCLSSGLRPAPQRSGRGLLCRAPTTAAQTAGALKI", "length": 87, "header": "tr|A0A9J7FFL7-1|A0A9J7JGI3_CRIGR Computationally mapped isoform of C-C motif chemokine 27 isoform X2 OS=Cricetulus griseus OX=10029 GN=Ccl27 PE=3 SV=1 CANONICAL=A0A9J7JGI3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FG70-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGI3/entry#A0A9J7FG70-1", "sequence": { "sequence": "MSRLRRYEVALEAEEEIYWGCFYFFPWLRMWRRERSQKLSLETTRLPLTSWQPWNKTKQKQEALPLPSSTTCCTQLYRQPLPNKLLRKITHVELQEADGDCHLQAIVTAAWLGGLSAIGKGSRRLYPT", "length": 128, "header": "tr|A0A9J7FG70-1|A0A9J7JGI3_CRIGR Computationally mapped isoform of C-C motif chemokine 27 isoform X2 OS=Cricetulus griseus OX=10029 GN=Ccl27 PE=3 SV=1 CANONICAL=A0A9J7JGI3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FJF8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGI3/entry#A0A9J7FJF8-1", "sequence": { "sequence": "MSPTSQKLSLETTRLPLTSWQPWNKTKQKQEALPLPSSTTCCTQLYRQPLPNKLLRKITHVELQEADGDCHLQAIVLHLAQRSVCVHPQNRSLARWFERHRKRLQETISNLNLELQMKMYSSPQQQN", "length": 127, "header": "tr|A0A9J7FJF8-1|A0A9J7JGI3_CRIGR Computationally mapped isoform of C-C motif chemokine 27 isoform X2 OS=Cricetulus griseus OX=10029 GN=Ccl27 PE=3 SV=1 CANONICAL=A0A9J7JGI3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JGI3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGI3/entry#A0A9J7JGI3-1", "sequence": { "sequence": "MSRLRRYEVALEAEEEIYWGCFYFFPWLRMWRRERSQKLSLETTRLPLTSWQPWNKTKQKQEALPLPSSTTCCTQLYRQPLPNKLLRKITHVELQEADGDCHLQAIVLHLAQRSVCVHPQNRSLARWFERHRKRLQETISNLNLELQMKMYSSPQQQN", "length": 158, "header": "tr|A0A9J7JGI3-1|A0A9J7JGI3_CRIGR Isoform 1 of C-C motif chemokine 27 isoform X2 OS=Cricetulus griseus OX=10029 GN=Ccl27 PE=3 SV=1 CANONICAL=A0A9J7JGI3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LVI5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LVI5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2LVI5", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LVI5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100770725", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770725", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "extracellular space", "id": "GO:0005615", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005615", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JGI3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGI3" } ], "pmid": "" }, { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JGI3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGI3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "immune response", "id": "GO:0006955", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0006955", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JGI3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGI3" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "chemokine activity", "id": "GO:0008009", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0008009", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JGI3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGI3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 121, "end_pos": 123, "annotation": "n_glycosylation_sequon" }, { "start_pos": 55, "end_pos": 57, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JGI3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGI3" }, { "id": "SM00199", "database": "SMART", "url": "http://smart.embl.de/smart/do_annotation.pl?DOMAIN=SM00199" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Chemokine interleukin-8-like", "eco_id": "ECO_0000259", "start_pos": 69, "end_pos": 135, "start_aa": "Ser", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 121, "end_pos": 123 }, { "start_pos": 55, "end_pos": 57 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": 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"n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7JHZ5-1", "uniprot_ac": "A0A9J7JHZ5", "uniprot_id": "A0A9J7JHZ5_CRIGR", "mass": { "chemical_mass": 102620.0, "monoisotopic_mass": 102620.0 }, "refseq": { "ac": "XP_027259020", "name": "transmembrane protein 8B isoform X4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259020" }, "gene_names": [ { "name": "Tmem8b", "type": "recommended", "evidence": [ { "id": "A0A9J7JHZ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JHZ5" } ] }, { "name": "Tmem8b", "type": "synonym", "evidence": [ { "id": "XP_027259020", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259020" } ] } ], "protein_names": [ { "name": "Transmembrane protein 8B isoform X4", "type": "synonym", "evidence": [ { "id": "A0A9J7JHZ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JHZ5/entry#names_and_taxonomy" } ] }, { "name": "transmembrane protein 8B isoform X4", "type": "synonym", "evidence": [ { "id": "XP_027259020", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259020" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027259020", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259020" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JHZ5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JHZ5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Tmem8b", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JHZ5", "locus": {} } ], "crossref": [ { "id": "A0A9J7JHZ5", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JHZ5", "database": "AlphaFoldDB", "categories": [] }, { "id": "100771785", "url": "https://www.ncbi.nlm.nih.gov/gene/100771785", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000742", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000742", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR021910", "url": "https://www.ebi.ac.uk/interpro/entry/IPR021910", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100771785", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771785", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JHZ5", "url": "https://www.orthodb.org/?gene=A0A9J7JHZ5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR14319", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14319", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR14319:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14319:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF12036", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12036", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027259020", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259020", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2M6G4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M6G4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2M6G4-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M6G4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FH43", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FH43", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FH43-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FH43-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FJ76", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ76", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FJ76-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJ76-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GPV3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GPV3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GPV3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GPV3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JHZ5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JHZ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JHZ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JHZ5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K389", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K389", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K389-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K389-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K4P7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4P7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K4P7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K4P7-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAQPLFRPLILSQSQPWPPATPSPHFPNLPRPRPMSQGMPRSRSPLQPQSLPLAWPLSPPRPLFQTLSQFPAQHLTLSHSQRLLKPLAQPQPQPQPQPLLPSPSHPLLPSHLLPLFEPQCSVQRNPVAQPLPPSLCLPKSLPLAPRLSHTLPLSQPRLRSGLQLPPALLLLLLFSVLGPGAGGLFLTDYSTCSPRKLSPFRSFANTELFHFHVPEDTFLAVWNLIIFKEQGGTFGDHCPDQSVTVYFRSGAPPVINPLHTHFPADTVVPGVFSLTLSWTLPNRTSGIFNVSSPLPGDWFLAAHLPQAHGHISVKGLQDECQYLLQPQLIVRRLLDVAVLVPGRPSEQTLSPHNRSALYKVFVPSFTYRVSAQLVCVGGRGASVCPLTLRLRPKAPPLHNSSSVTCGGASVCQLELALPPWGHWVYVRVETPSRGPGRIIRFQLCVRLQECPQPSLSRALVPGAAMNMPQSLGNQPLPPEPPSLGTPIEGSGAIVPPEHCWPVRPTLRNELDTFSVHFYIFFGPSVALPPERPAVFALRLLPVLDSGGVLSLELQLNVSSLHQENVTVFGCLTHEVPLSLGDAAVTCSKESLAGFLFSVSVTSRVARLRIPFPQTGTWFLTLRSLCGVGPRFVRCRNATAEVRLRTFLSPCVDDCGPYGQCKLLRTHNYLYAACECKAGWRGWGCTDSADALTYGFQLLSTLLLCLSNLMFLPPVVLAIRSRYVLEAAVYTFTMFFSTFYHACDQPGIVVFCIMDYDVLQFCDFLGSLMSVWVTVIAMARLQPVIKQVLYLLGAMLLSMALQLDRHGLWNLLGPSLFALGILATAWFAASGAGTVTHQHGAAGSSTCAQAALLQAVPSYCMLSWRPGTTTSTFIAFGICSLLAVWASCCRLVPRLTAGSHLELGPGAAVTSCASMNRKSWALWAQEGLLSAASVPAERGFGPGS", "length": 943, "header": "tr|A0A9J7JHZ5-1|A0A9J7JHZ5_CRIGR Isoform 1 of Transmembrane protein 8B isoform X4 OS=Cricetulus griseus OX=10029 GN=Tmem8b PE=3 SV=1 CANONICAL=A0A9J7JHZ5-1" }, "isoforms": [ { "isoform_ac": "A0A8C2M6G4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JHZ5/entry#A0A8C2M6G4-1", "sequence": { "sequence": "MAQPLFRPLILSQSQPWPPATPSPHFPNLPRPRPMSQGMPRSRSPLQPQSLPLAWPLSPPRPLFQTLSQFPAQHLTLSHSQRLLKPLAQPQPQPQPQPLLPSPSHPLLPSHLLPLFEPQCSVQRNPVAQPLPPSLCLPKSLPLAPRLSHTLPLSQPRLRSGLQLPPALLLLLLFSVLGPGAGGLFLTDYSTCSPRKLSPFRSFANTELFHFHVPEDTFLAVWNLIIFKEQGGTFGDHCPDQSVTVYFRSGAPPVINPLHTHFPADTVVPGVFSLTLSWTLPNRTSGIFNVSSPLPGDWFLAAHLPQAHGHISVKGLQDECQYLLQPQLIVRRLLDVAVLVPGRPSEQTLSPHNRSALYKVFVPSFTYRVSAQLVCVGGRGASVCPLTLRLRPKAPPLHNSSSVTCGGASVCQLELALPPWGHWVYVRVETPSRGPGRIIRFQLCVRLQECPQPSLSRALVPGAAMNMPQSLGNQPLPPEPPSLGTPIEGSGAIVPPEHCWPVRPTLRNELDTFSVHFYIFFGPSVALPPERPAVFALRLLPVLDSGGVLSLELQLNVSSLHQENVTVFGCLTHEVPLSLGDAAVTCSKESLAGFLFSVSVTSRVARLRIPFPQTGTWFLTLRSLCGVGPRFVRCRNATAEVRLRTFLSPCVDDCGPYGQCKLLRTHNYLYAACECKAGWRGWGCTDSADALTYGFQLLSTLLLCLSNLMFLPPVVLAIRSRYVLEAAVYTFTMFFSTFYHACDQPGIVVFCIMDYDVLQFCDFLGSLMSVWVTVIAMARLQPVIKQVLYLLGAMLLSMALQLDRHGLWNLLGPSLFALGILATAWTVRSVRRRHCYPPTWRRWLFYLCPGSLIAGSAVLLYAFVETRDNYFYIHSIWHMLIAGSVGFLLPPRAKTDRRVPSGARARGCGYQLCINEQEELGLVGPGGATVSSICAS", "length": 936, "header": "tr|A0A8C2M6G4-1|A0A9J7JHZ5_CRIGR Computationally mapped isoform of Transmembrane protein 8B isoform X4 OS=Cricetulus griseus OX=10029 GN=Tmem8b PE=3 SV=1 CANONICAL=A0A9J7JHZ5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FH43-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JHZ5/entry#A0A9J7FH43-1", "sequence": { "sequence": "MWLCWFLAVPQSKPSPPTIVQPCIKCPQPSLSRALVPGAAMNMPQSLGNQPLPPEPPSLGTPIEGSGAIVPPEHCWPVRPTLRNELDTFSVHFYIFFGPSVALPPERPAVFALRLLPVLDSGGVLSLELQLNVSSLHQENVTVFGCLTHEVPLSLGDAAVTCSKESLAGFLFSVSVTSRVARLRIPFPQTGTWFLTLRSLCGVGPRFVRCRNATAEVRLRTFLSPCVDDCGPYGQCKLLRTHNYLYAACECKAGWRGWGCTDSADALTYGFQLLSTLLLCLSNLMFLPPVVLAIRSRYVLEAAVYTFTMFFSTFYHACDQPGIVVFCIMDYDVLQFCDFLGSLMSVWVTVIAMARLQPVIKQVLYLLGAMLLSMALQLDRHGLWNLLGPSLFALGILATAWTVRSVRRRHCYPPTWRRWLFYLCPGSLIAGSAVLLYAFVETRDNYFYIHSIWHMLIAGSVGFLLPPRAKTDRRVPSGARARGCGYQLCINEQEELGLVGPGGATVSSICAS", "length": 512, "header": "tr|A0A9J7FH43-1|A0A9J7JHZ5_CRIGR Computationally mapped isoform of Transmembrane protein 8B isoform X4 OS=Cricetulus griseus OX=10029 GN=Tmem8b PE=3 SV=1 CANONICAL=A0A9J7JHZ5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FJ76-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JHZ5/entry#A0A9J7FJ76-1", "sequence": { "sequence": "MAQPLFRPLILSQSQPWPPATPSPHFPNLPRPRPMSQGMPRSSLDSGLGSSCHQPYCCCCCFLSLVQGLGLQDECQYLLQPQLIVRRLLDVAVLVPGRPSEQTLSPHNRSALYKVFVPSFTYRVSAQLVCVGGRGASVCPLTLRLRPKAPPLHNSSSVTCGGASVCQLELALPPWGHWVYVRVETPSRGPGRIIRFQLCVRLQECPQPSLSRALVPGAAMNMPQSLGNQPLPPEPPSLGTPIEGSGAIVPPEHCWPVRPTLRNELDTFSVHFYIFFGPSVALPPERPAVFALRLLPVLDSGGVLSLELQLNVSSLHQENVTVFGCLTHEVPLSLGDAAVTCSKESLAGFLFSVSVTSRVARLRIPFPQTGTWFLTLRSLCGVGPRFVRCRNATAEVRLRTFLSPCVDDCGPYGQCKLLRTHNYLYAACECKAGWRGWGCTDSADALTYGFQLLSTLLLCLSNLMFLPPVVLAIRSRYVLEAAVYTFTMFFSTFYHACDQPGIVVFCIMDYDVLQFCDFLGSLMSVWVTVIAMARLQPVIKQVLYLLGAMLLSMALQLDRHGLWNLLGPSLFALGILATAWFAASGAGTVTHQHGAAGSSTCAQAALLQAVPSYCMLSWRPGTTTSTFIAFGICSLLAVWASCCRLVPRLTAGSHLELGPGAAVTSCASMNRKSWALWAQEGLLSAASVPAERGFGPGS", "length": 698, "header": "tr|A0A9J7FJ76-1|A0A9J7JHZ5_CRIGR Computationally mapped isoform of Transmembrane protein 8B isoform X4 OS=Cricetulus griseus OX=10029 GN=Tmem8b PE=3 SV=1 CANONICAL=A0A9J7JHZ5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GPV3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JHZ5/entry#A0A9J7GPV3-1", "sequence": { "sequence": "MWLCWFLAVPQSKPSPPTIVQPCIKCPQPSLSRALVPGAAMNMPQSLGNQPLPPEPPSLGTPIEGSGAIVPPEHCWPVRPTLRNELDTFSVHFYIFFGPSVALPPERPAVFALRLLPVLDSGGVLSLELQLNVSSLHQENVTVFGCLTHEVPLSLGDAAVTCSKESLAGFLFSVSVTSRVARLRIPFPQTGTWFLTLRSLCGVGPRFVRCRNATAEVRLRTFLSPCVDDCGPYGQCKLLRTHNYLYAACECKAGWRGWGCTDSADALTYGFQLLSTLLLCLSNLMFLPPVVLAIRSRYVLEAAVYTFTMFFSTFYHACDQPGIVVFCIMDYDVLQFCDFLGSLMSVWVTVIAMARLQPVIKQVLYLLGAMLLSMALQLDRHGLWNLLGPSLFALGILATAWFAASGAGTVTHQHGAAGSSTCAQAALLQAVPSYCMLSWRPGTTTSTFIAFGICSLLAVWASCCRLVPRLTAGSHLELGPGAAVTSCASMNRKSWALWAQEGLLSAASVPAERGFGPGS", "length": 519, "header": "tr|A0A9J7GPV3-1|A0A9J7JHZ5_CRIGR Computationally mapped isoform of Transmembrane protein 8B isoform X4 OS=Cricetulus griseus OX=10029 GN=Tmem8b PE=3 SV=1 CANONICAL=A0A9J7JHZ5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JHZ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JHZ5/entry#A0A9J7JHZ5-1", "sequence": { "sequence": "MAQPLFRPLILSQSQPWPPATPSPHFPNLPRPRPMSQGMPRSRSPLQPQSLPLAWPLSPPRPLFQTLSQFPAQHLTLSHSQRLLKPLAQPQPQPQPQPLLPSPSHPLLPSHLLPLFEPQCSVQRNPVAQPLPPSLCLPKSLPLAPRLSHTLPLSQPRLRSGLQLPPALLLLLLFSVLGPGAGGLFLTDYSTCSPRKLSPFRSFANTELFHFHVPEDTFLAVWNLIIFKEQGGTFGDHCPDQSVTVYFRSGAPPVINPLHTHFPADTVVPGVFSLTLSWTLPNRTSGIFNVSSPLPGDWFLAAHLPQAHGHISVKGLQDECQYLLQPQLIVRRLLDVAVLVPGRPSEQTLSPHNRSALYKVFVPSFTYRVSAQLVCVGGRGASVCPLTLRLRPKAPPLHNSSSVTCGGASVCQLELALPPWGHWVYVRVETPSRGPGRIIRFQLCVRLQECPQPSLSRALVPGAAMNMPQSLGNQPLPPEPPSLGTPIEGSGAIVPPEHCWPVRPTLRNELDTFSVHFYIFFGPSVALPPERPAVFALRLLPVLDSGGVLSLELQLNVSSLHQENVTVFGCLTHEVPLSLGDAAVTCSKESLAGFLFSVSVTSRVARLRIPFPQTGTWFLTLRSLCGVGPRFVRCRNATAEVRLRTFLSPCVDDCGPYGQCKLLRTHNYLYAACECKAGWRGWGCTDSADALTYGFQLLSTLLLCLSNLMFLPPVVLAIRSRYVLEAAVYTFTMFFSTFYHACDQPGIVVFCIMDYDVLQFCDFLGSLMSVWVTVIAMARLQPVIKQVLYLLGAMLLSMALQLDRHGLWNLLGPSLFALGILATAWFAASGAGTVTHQHGAAGSSTCAQAALLQAVPSYCMLSWRPGTTTSTFIAFGICSLLAVWASCCRLVPRLTAGSHLELGPGAAVTSCASMNRKSWALWAQEGLLSAASVPAERGFGPGS", "length": 943, "header": "tr|A0A9J7JHZ5-1|A0A9J7JHZ5_CRIGR Isoform 1 of Transmembrane protein 8B isoform X4 OS=Cricetulus griseus OX=10029 GN=Tmem8b PE=3 SV=1 CANONICAL=A0A9J7JHZ5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K389-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JHZ5/entry#A0A9J7K389-1", "sequence": { "sequence": "MNMPQSLGNQPLPPEPPSLGTPIEGSGAIVPPEHCWPVRPTLRNELDTFSVHFYIFFGPSVALPPERPAVFALRLLPVLDSGGVLSLELQLNVSSLHQENVTVFGCLTHEVPLSLGDAAVTCSKESLAGFLFSVSVTSRVARLRIPFPQTGTWFLTLRSLCGVGPRFVRCRNATAEVRLRTFLSPCVDDCGPYGQCKLLRTHNYLYAACECKAGWRGWGCTDSADALTYGFQLLSTLLLCLSNLMFLPPVVLAIRSRYVLEAAVYTFTMFFSTFYHACDQPGIVVFCIMDYDVLQFCDFLGSLMSVWVTVIAMARLQPVIKQVLYLLGAMLLSMALQLDRHGLWNLLGPSLFALGILATAWFAASGAGTVTHQHGAAGSSTCAQAALLQAVPSYCMLSWRPGTTTSTFIAFGICSLLAVWASCCRLVPRLTAGSHLELGPGAAVTSCASMNRKSWALWAQEGLLSAASVPAERGFGPGS", "length": 479, "header": "tr|A0A9J7K389-1|A0A9J7JHZ5_CRIGR Computationally mapped isoform of Transmembrane protein 8B isoform X4 OS=Cricetulus griseus OX=10029 GN=Tmem8b PE=3 SV=1 CANONICAL=A0A9J7JHZ5-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K4P7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JHZ5/entry#A0A9J7K4P7-1", "sequence": { "sequence": "MAQPLFRPLILSQSQPWPPATPSPHFPNLPRPRPMSQGMPRSRSPLQPQSLPLAWPLSPPRPLFQTLSQFPAQHLTLSHSQRLLKPLAQPQPQPQPQPLLPSPSHPLLPSHLLPLFEPQCSVQRNPVAQPLPPSLCLPKSLPLAPRLSHTLPLSQPRLRSGLQLPPALLLLLLFSVLGPGAGGLFLTDYSTCSPRKLSPFRSFANTELFHFHVPEDTFLAVWNLIIFKEQGGTFGDHCPDQSVTVYFRSGAPPVINPLHTHFPADTVVPGVFSLTLSWTLPNRTSGIFNVSSPLPGDWFLAAHLPQAHGHISVKGLQDECQYLLQPQLIVRRLLDVAVLVPGRPSEQTLSPHNRSALYKVFVPSFTYRVSAQLVCVGGRGASVCPLTLRLRPKAPPLHNSSSVTCGGASVCQLELALPPWGHWVYVRVETPSRGPGRIIRFQLCVRLQECPQPSLSRALVPGAAMNMPQSLGNQPLPPEPPSLGTPIEGSGAIVPPEHCWPVRPTLRNELDTFSVHFYIFFGPSVALPPERPAVFALRLLPVLDSGGVLSLELQLNVSSLHQENVTVFGCLTHEVPLSLGDAAVTCSKESLAGFLFSVSVTSRVARLRIPFPQTGTWFLTLRSLCGVGPRFVRCRNATAEVRLRTFLSPCVDDCGPYGQCKLLRTHNYLYAACECKADSADALTYGFQLLSTLLLCLSNLMFLPPVVLAIRSRYVLEAAVYTFTMFFSTFYHACDQPGIVVFCIMDYDVLQFCDFLGSLMSVWVTVIAMARLQPVIKQVLYLLGAMLLSMALQLDRHGLWNLLGPSLFALGILATAWFAASGAGTVTHQHGAAGSSTCAQAALLQAVPSYCMLSWRPGTTTSTFIAFGICSLLAVWASCCRLVPRLTAGSHLELGPGAAVTSCASMNRKSWALWAQEGLLSAASVPAERGFGPGS", "length": 935, "header": "tr|A0A9J7K4P7-1|A0A9J7JHZ5_CRIGR Computationally mapped isoform of Transmembrane protein 8B isoform X4 OS=Cricetulus griseus OX=10029 GN=Tmem8b PE=3 SV=1 CANONICAL=A0A9J7JHZ5-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 21, "start_aa": "Thr", "end_pos": 21, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr21", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M6G4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M6G4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2M6G4", "url": "https://www.uniprot.org/uniprotkb/A0A8C2M6G4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100771785", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100771785", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JHZ5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JHZ5" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 282, "end_pos": 284, "annotation": "n_glycosylation_sequon" }, { "start_pos": 289, "end_pos": 291, "annotation": "n_glycosylation_sequon" }, { "start_pos": 353, "end_pos": 355, "annotation": "n_glycosylation_sequon" }, { "start_pos": 399, "end_pos": 401, "annotation": "n_glycosylation_sequon" }, { "start_pos": 556, "end_pos": 558, "annotation": "n_glycosylation_sequon" }, { "start_pos": 564, "end_pos": 566, "annotation": "n_glycosylation_sequon" }, { "start_pos": 636, "end_pos": 638, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JHZ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JHZ5" }, { "id": "PS00022", "database": "PROSITE", "url": "https://prosite.expasy.org/PS00022" }, { "id": "PS01186", "database": "PROSITE", "url": "https://prosite.expasy.org/PS01186" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EGF-like", "eco_id": "ECO_0000259", "start_pos": 673, "end_pos": 684, "start_aa": "Cys", "end_aa": "Cys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 21 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 282, "end_pos": 284 }, { "start_pos": 289, "end_pos": 291 }, { "start_pos": 353, "end_pos": 355 }, { "start_pos": 399, "end_pos": 401 }, { "start_pos": 556, "end_pos": 558 }, { "start_pos": 564, "end_pos": 566 }, { "start_pos": 636, "end_pos": 638 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7JGE1-1", "uniprot_ac": "A0A9J7JGE1", "uniprot_id": "A0A9J7JGE1_CRIGR", "mass": { "chemical_mass": 95581.0, "monoisotopic_mass": 95581.0 }, "refseq": { "ac": "XP_027256645", "name": "colorectal mutant cancer protein isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256645" }, "gene_names": [ { "name": "Mcc", "type": "recommended", "evidence": [ { "id": "A0A9J7JGE1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGE1" } ] }, { "name": "Mcc", "type": "synonym", "evidence": [ { "id": "XP_027256645", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256645" } ] } ], "protein_names": [ { "name": "Colorectal mutant cancer protein isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7JGE1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGE1/entry#names_and_taxonomy" } ] }, { "name": "colorectal mutant cancer protein isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027256645", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256645" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027256645", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256645" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JGE1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGE1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Mcc", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGE1", "locus": {} } ], "crossref": [ { "id": "A0A9J7JGE1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JGE1", "database": "AlphaFoldDB", "categories": [] }, { "id": "100773341", "url": "https://www.ncbi.nlm.nih.gov/gene/100773341", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR019536", "url": "https://www.ebi.ac.uk/interpro/entry/IPR019536", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040171", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040171", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100773341", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773341", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JGE1", "url": "https://www.orthodb.org/?gene=A0A9J7JGE1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23347", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23347", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23347:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23347:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10506", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10506", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027256645", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256645", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MS53", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MS53", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MS53-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MS53-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JGE1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGE1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JGE1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGE1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MNSGVAVKYGNDSSAELSEMFLLLQLKKLNHSNGQIRFNYQLHLAALASLKGDIVELNKRLQQTERERDLLEKKLAKAQCEQSHLMREHEDVQERTTLRYEERITELHSIIAELNKKIDRLQGTTIREEDEYSELRSELSQSQQEVNEDSRSMDQDQTSVSIPENQSTMVTADMDNCSDLNSELQRVLTGLESVVCGRKKSSCNLSVAEVDRHIEQLTTASEHCDLAIKTVEEIEGVLGRDLYPNLAEERSRWEKELAGLREENESLTAMLCSKEEELNRTKATMNAIREERDRLRRRVRELQTRLQSVQATGPSSPGRLTSANRPINPSTGELSTSSSSNDIPIAKIAERVKLSKTRSESSSSDRPVLGSEISSIGVSSSVAEHLAHSLQDCSNIQEIFQTLYSHGSAISESKIREFEVETERLNSRIEHLKSQNDLLTITLEECKSNAERMSMLVGKYESNATALRLALQYSEQCIEAYELLLALAESEQSLILGQFRAAGVGSSPGDQSGDENITQMLKRAHDCRKTAENAAKALLMKLDGSCGGAFAVAGCSVQPWESLSSNSHTSTTSSTASSCDTEFTKEDEQRLKDYIQQLKNDRAAVKLTMLELESIHIDPLSYDVKPRGDSQRLDLENAVLMQELMAMKEEMAELKAQLYLLEKEKKALELKLSTREAQEQAYLVHIEHLKSEVEEQKEQRMRSLSSTSSSGKEKPGKECADAASPALSLAEVRTNSDSELATEFANAIRREKKLKARVQELVSALERLTKSSEIRHQQSAEFVNDLKRANSNLVAAYEKAKKKHQNKLKKLESQMMAMVERHETQVRMLKQRIALLEEENSRPHTNETSL", "length": 850, "header": "tr|A0A9J7JGE1-1|A0A9J7JGE1_CRIGR Isoform 1 of Colorectal mutant cancer protein isoform X2 OS=Cricetulus griseus OX=10029 GN=Mcc PE=4 SV=1 CANONICAL=A0A9J7JGE1-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MS53-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGE1/entry#A0A8C2MS53-1", "sequence": { "sequence": "MNSGVAVKYGNDSSAELSELHLAALASLKGDIVELNKRLQQTERERDLLEKKLAKAQCEQSHLMREHEDVQERTTLRYEERITELHSIIAELNKKIDRLQGTTIREEDEYSELRSELSQSQQEVNEDSRSMDQDQTSVSIPENQSTMVTADMDNCSDLNSELQRVLTGLESVVCGRKKSSCNLSVAEVDRHIEQLTTASEHCDLAIKTVEEIEGVLGRDLYPNLAEERSRWEKELAGLREENESLTAMLCSKEEELNRTKATMNAIREERDRLRRRVRELQTRLQSVQATGPSSPGRLTSANRPINPSTGELSTSSSSNDIPIAKIAERVKLSKTRSESSSSDRPVLGSEISSIGVSSSVAEHLAHSLQDCSNIQEIFQTLYSHGSAISESKIREFEVETERLNSRIEHLKSQNDLLTITLEECKSNAERMSMLVGKYESNATALRLALQYSEQCIEAYELLLALAESEQSLILGQFRAAGVGSSPGDQSGDENITQMLKRAHDCRKTAENAAKALLMKLDGSCGGAFAVAGCSVQPWESLSSNSHTSTTSSTASSCDTEFTKEDEQRLKDYIQQLKNDRAAVKLTMLELESIHIDPLSYDVKPRGDSQRLDLENAVLMQELMAMKEEMAELKAQLYLLEKEKKALELKLSTREAQEQAYLVHIEHLKSEVEEQKEQRMRSLSSTSSSGKEKPGKECADAASPALSLAEVRTNSDSELATEFANAIRREKKLKARVQELVSALERLTKSSEIRHQQSAEFVNDLKRANSNLVAAYEKAKKKHQNKLKKLESQMMAMVERHETQVRMLKQRIALLEEENSRPHTNETSL", "length": 828, "header": "tr|A0A8C2MS53-1|A0A9J7JGE1_CRIGR Computationally mapped isoform of Colorectal mutant cancer protein isoform X2 OS=Cricetulus griseus OX=10029 GN=Mcc PE=4 SV=1 CANONICAL=A0A9J7JGE1-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JGE1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGE1/entry#A0A9J7JGE1-1", "sequence": { "sequence": "MNSGVAVKYGNDSSAELSEMFLLLQLKKLNHSNGQIRFNYQLHLAALASLKGDIVELNKRLQQTERERDLLEKKLAKAQCEQSHLMREHEDVQERTTLRYEERITELHSIIAELNKKIDRLQGTTIREEDEYSELRSELSQSQQEVNEDSRSMDQDQTSVSIPENQSTMVTADMDNCSDLNSELQRVLTGLESVVCGRKKSSCNLSVAEVDRHIEQLTTASEHCDLAIKTVEEIEGVLGRDLYPNLAEERSRWEKELAGLREENESLTAMLCSKEEELNRTKATMNAIREERDRLRRRVRELQTRLQSVQATGPSSPGRLTSANRPINPSTGELSTSSSSNDIPIAKIAERVKLSKTRSESSSSDRPVLGSEISSIGVSSSVAEHLAHSLQDCSNIQEIFQTLYSHGSAISESKIREFEVETERLNSRIEHLKSQNDLLTITLEECKSNAERMSMLVGKYESNATALRLALQYSEQCIEAYELLLALAESEQSLILGQFRAAGVGSSPGDQSGDENITQMLKRAHDCRKTAENAAKALLMKLDGSCGGAFAVAGCSVQPWESLSSNSHTSTTSSTASSCDTEFTKEDEQRLKDYIQQLKNDRAAVKLTMLELESIHIDPLSYDVKPRGDSQRLDLENAVLMQELMAMKEEMAELKAQLYLLEKEKKALELKLSTREAQEQAYLVHIEHLKSEVEEQKEQRMRSLSSTSSSGKEKPGKECADAASPALSLAEVRTNSDSELATEFANAIRREKKLKARVQELVSALERLTKSSEIRHQQSAEFVNDLKRANSNLVAAYEKAKKKHQNKLKKLESQMMAMVERHETQVRMLKQRIALLEEENSRPHTNETSL", "length": 850, "header": "tr|A0A9J7JGE1-1|A0A9J7JGE1_CRIGR Isoform 1 of Colorectal mutant cancer protein isoform X2 OS=Cricetulus griseus OX=10029 GN=Mcc PE=4 SV=1 CANONICAL=A0A9J7JGE1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MS53", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MS53" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MS53", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MS53" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100773341", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773341", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JGE1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGE1" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "negative regulation of canonical Wnt signaling pathway", "id": "GO:0090090", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0090090", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JGE1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGE1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 11, "end_pos": 13, "annotation": "n_glycosylation_sequon" }, { "start_pos": 165, "end_pos": 167, "annotation": "n_glycosylation_sequon" }, { "start_pos": 176, "end_pos": 178, "annotation": "n_glycosylation_sequon" }, { "start_pos": 204, "end_pos": 206, "annotation": "n_glycosylation_sequon" }, { "start_pos": 264, "end_pos": 266, "annotation": "n_glycosylation_sequon" }, { "start_pos": 279, "end_pos": 281, "annotation": "n_glycosylation_sequon" }, { "start_pos": 30, "end_pos": 32, "annotation": "n_glycosylation_sequon" }, { "start_pos": 463, "end_pos": 465, "annotation": "n_glycosylation_sequon" }, { "start_pos": 516, "end_pos": 518, "annotation": "n_glycosylation_sequon" }, { "start_pos": 846, "end_pos": 848, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JGE1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGE1" }, { "id": "PF10506", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10506" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Harmonin-binding protein USHBP1 PDZ-binding", "eco_id": "ECO_0000259", "start_pos": 424, "end_pos": 487, "start_aa": "Arg", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 11, "end_pos": 13 }, { "start_pos": 165, "end_pos": 167 }, { "start_pos": 176, "end_pos": 178 }, { "start_pos": 204, "end_pos": 206 }, { "start_pos": 264, "end_pos": 266 }, { "start_pos": 279, "end_pos": 281 }, { "start_pos": 30, "end_pos": 32 }, { "start_pos": 463, "end_pos": 465 }, { "start_pos": 516, "end_pos": 518 }, { "start_pos": 846, "end_pos": 848 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7JGH3-1", "uniprot_ac": "A0A9J7JGH3", "uniprot_id": "A0A9J7JGH3_CRIGR", "mass": { "chemical_mass": 140153.0, "monoisotopic_mass": 140153.0 }, "refseq": { "ac": "XP_027258600", "name": "HMG domain-containing protein 3 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027258600" }, "gene_names": [ { "name": "Hmgxb3", "type": "recommended", "evidence": [ { "id": "A0A9J7JGH3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGH3" } ] }, { "name": "Hmgxb3", "type": "synonym", "evidence": [ { "id": "XP_027258600", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027258600" } ] } ], "protein_names": [ { "name": "HMG domain-containing protein 3 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027258600", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027258600" }, { "id": "A0A9J7JGH3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGH3/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027258600", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027258600" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JGH3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGH3" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Hmgxb3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGH3", "locus": {} } ], "crossref": [ { "id": "A0A9J7JGH3", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JGH3", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd21981", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21981", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100764075", "url": "https://www.ncbi.nlm.nih.gov/gene/100764075", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR009071", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009071", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036910", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036910", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039598", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039598", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR040648", "url": "https://www.ebi.ac.uk/interpro/entry/IPR040648", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100764075", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764075", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JGH3", "url": "https://www.orthodb.org/?gene=A0A9J7JGH3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR17609", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR17609", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR17609:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR17609:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF09011", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF09011", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF18717", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF18717", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027258600", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027258600", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2MUY6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MUY6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2MUY6-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MUY6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JGH3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGH3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JGH3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGH3-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MDTPYDGAEVTVVMEEIEEAYYTSPGPPKKKRKYKLQGEKAKKPRSAYLLYYYDIYLKVQQELPHLPQSEINKKISESWRLLSVAERSYYLEKAKLEKEGLDPNSKLSALTAVVPDIPGFRKILPRSDYIIIPKSTLQEDRSCPQLELCVAQNQMSPKGSTLVSHASPDVVPSHAGMAEQCLAVEALAEEVGALSQPGAVQEIATSEILSQDMLLEEASLEVGESHHPYQTSLVIEETLVNGSPDVPTGSLAVPHSQVGESLSVLTVMRDSSENGSSASTPQFIMLPLPAYSVVENPSSIKLTTTYTRRGHGTCTSPGCSFTYVTRHKPPKCPTCGNFLGGKWIPKEKAGKVKVELTPGVPSKGSVIKRGQQPVITEKNPCTENASKLTLENSEAVSQLLTVAPPREVGEENEWEEVIVSDDHLFVKEVPGNCATTVTKTPIVKSGIQAEVTLGTTENGSPGPDIASAAEGTSTSSLLPAQKKSPGVDLFTAGPKGPELKGRARGKPSLLAAARPMRAILPAPTSVGLPRARQAFPLDKTPPVRTCGLKPSTLKQLGQPMQQPASTGEVKLSNCPSNRTPQVKVVEVKPDMFPPYKYSCTVTLDLGLATSRGRGKCKNPSCSYVYTNRHKPRICPSCGFNLAKDRTEKTMKTEVNSSHPDMPSTTEPLNTAQREIQRQSTLQLLRKVLQIPENESELAEVFALIHELNSSRLILSNVSEETVTIEQTSWSNYYESPSTQCLLCSSPLFKGGQNSLAGPQECWLLTANRLQVVTAQVKMCLNPHCLALHSFMDIYTGLFNVGNKLLVSLDLLFAIRNQIKMGEDPKMSVSVVLKSVQEQTEKTLTSEELSQLQELLCNGYWAFECLTVRDYNDMICGICGVAPKVEMAQRNEENVLALKSVEFTWPEFLGSSEVNVEDFWTTMETEVIEQVAFPTSIPITKFDASVIAPFFPPLMRGTVVVNTEKDKNLDVQPVPGNGSALVRLLQEGTCKLEELSSYGGEELQYLLEQCGIPYGPEDSRDQLCFSLLALYESVQNGARARPPPTHFTGGKIYKVCPHQVVCGSKYLVRGESARDHVDLLASSRHWPPIYVVDMATPVALCADLCYPELTSQMWGKNQGCFSSPTEPVVSVSCPELLDQHYSVDVPEAENSVQHPVTKTTARRIVHANTKPDPSDPSAGHHSLSLCPELAPYASIVDCKLTSVRQRPIAFDNATHYYLYNRLMDFLTSREIVNRQIHDVVQSCQPGEVVIRDNLYRLGVAQIKTEAQEDGEEEGASVAE", "length": 1278, "header": "tr|A0A9J7JGH3-1|A0A9J7JGH3_CRIGR Isoform 1 of HMG domain-containing protein 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Hmgxb3 PE=4 SV=1 CANONICAL=A0A9J7JGH3-1" }, "isoforms": [ { "isoform_ac": "A0A8C2MUY6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGH3/entry#A0A8C2MUY6-1", "sequence": { "sequence": "MDTPYDGAEVTVVMEEIEEAYYTSPGPPKKKRKYKLQGEKAKKPRSAYLLYYYDIYLKVQQELPHLPQSEINKKISESWRLLSVAERSYYLEKAKLEKEGLDPNSKLSALTAVVPDIPGFRKILPRSDYIIIPKSTLQEDRSCPQLELCVAQNQMSPKGSTLVSHASPDVVPSHAGMAEQCLAVEALAEEVGALSQPGAVQEIATSEILSQDMLLEEASLEVGESHHPYQTSLVIEETLVNGSPDVPTGSLAVPHSQVGESLSVLTVMRDSSENGSSASTPQFIMLPLPAYSVVENPSSIKLTTTYTRRGHGTCTSPGCSFTYVTRHKPPKCPTCGNFLGGKWIPKEKAGKVKVELTPGVPSKGSVIKRGQQPVITEKNPCTENASKLTLENSEAEVPGNCATTVTKTPIVKSGIQAEVTLGTTENGSPGPDIASAAEGTSTSSLLPAQKKSPGVDLFTAGPKGPELKGRARGKPSLLAAARPMRAILPAPTSVGLPRARQAFPLDKTPPVRTCGLKPSTLKQLGQPMQQPASTGEVKLSNCPSNRTPQVKVVEVKPDMFPPYKYSCTVTLDLGLATSRGRGKCKNPSCSYVYTNRHKPRICPSCGFNLAKDRTEKTMKTEVNSSHPDMPSTTEPLNTAQREIQRQSTLQLLRKVLQIPENESELAEVFALIHELNSSRLILSNVSEETVTIEQTSWSNYYESPSTQCLLCSSPLFKGGQNSLAGPQECWLLTANRLQVVTAQVKMCLNPHCLALHSFMDIYTGLFNVGNKLLVSLDLLFAIRNQIKMGEDPKMSVSVVLKSVQEQTEKTLTSEELSQLQELLCNGYWAFECLTVRDYNDMICGICGVAPKVEMAQRNEENVLALKSVEFTWPEFLGSSEVNVEDFWTTMETEVIEQVAFPTSIPITKFDASVIAPFFPPLMRGTVVVNTEKDKNLDVQPVPGNGSALVRLLQEGTCKLEELSSYGGEELQYLLEQCGIPYGPEDSRDQLCFSLLALYESVQNGARARPPPTHFTGGKIYKVCPHQVVCGSKYLVRGESARDHVDLLASSRHWPPIYVVDMATPVALCADLCYPELTSQMWGKNQGCFSSPTEPVVSVSCPELLDQHYSVDVPEAENSVQHPVTKTTARRIVHANTKPDPSDPSAGHHSLSLCPELAPYASIVDCKLTSVRQRPIAFDNATHYYLYNRLMDFLTSREIVNRQIHDVVQSCQPGEVVIRDNLYRLGVAQIKTEAQEDGEEEGASVAE", "length": 1246, "header": "tr|A0A8C2MUY6-1|A0A9J7JGH3_CRIGR Computationally mapped isoform of HMG domain-containing protein 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Hmgxb3 PE=4 SV=1 CANONICAL=A0A9J7JGH3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JGH3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGH3/entry#A0A9J7JGH3-1", "sequence": { "sequence": "MDTPYDGAEVTVVMEEIEEAYYTSPGPPKKKRKYKLQGEKAKKPRSAYLLYYYDIYLKVQQELPHLPQSEINKKISESWRLLSVAERSYYLEKAKLEKEGLDPNSKLSALTAVVPDIPGFRKILPRSDYIIIPKSTLQEDRSCPQLELCVAQNQMSPKGSTLVSHASPDVVPSHAGMAEQCLAVEALAEEVGALSQPGAVQEIATSEILSQDMLLEEASLEVGESHHPYQTSLVIEETLVNGSPDVPTGSLAVPHSQVGESLSVLTVMRDSSENGSSASTPQFIMLPLPAYSVVENPSSIKLTTTYTRRGHGTCTSPGCSFTYVTRHKPPKCPTCGNFLGGKWIPKEKAGKVKVELTPGVPSKGSVIKRGQQPVITEKNPCTENASKLTLENSEAVSQLLTVAPPREVGEENEWEEVIVSDDHLFVKEVPGNCATTVTKTPIVKSGIQAEVTLGTTENGSPGPDIASAAEGTSTSSLLPAQKKSPGVDLFTAGPKGPELKGRARGKPSLLAAARPMRAILPAPTSVGLPRARQAFPLDKTPPVRTCGLKPSTLKQLGQPMQQPASTGEVKLSNCPSNRTPQVKVVEVKPDMFPPYKYSCTVTLDLGLATSRGRGKCKNPSCSYVYTNRHKPRICPSCGFNLAKDRTEKTMKTEVNSSHPDMPSTTEPLNTAQREIQRQSTLQLLRKVLQIPENESELAEVFALIHELNSSRLILSNVSEETVTIEQTSWSNYYESPSTQCLLCSSPLFKGGQNSLAGPQECWLLTANRLQVVTAQVKMCLNPHCLALHSFMDIYTGLFNVGNKLLVSLDLLFAIRNQIKMGEDPKMSVSVVLKSVQEQTEKTLTSEELSQLQELLCNGYWAFECLTVRDYNDMICGICGVAPKVEMAQRNEENVLALKSVEFTWPEFLGSSEVNVEDFWTTMETEVIEQVAFPTSIPITKFDASVIAPFFPPLMRGTVVVNTEKDKNLDVQPVPGNGSALVRLLQEGTCKLEELSSYGGEELQYLLEQCGIPYGPEDSRDQLCFSLLALYESVQNGARARPPPTHFTGGKIYKVCPHQVVCGSKYLVRGESARDHVDLLASSRHWPPIYVVDMATPVALCADLCYPELTSQMWGKNQGCFSSPTEPVVSVSCPELLDQHYSVDVPEAENSVQHPVTKTTARRIVHANTKPDPSDPSAGHHSLSLCPELAPYASIVDCKLTSVRQRPIAFDNATHYYLYNRLMDFLTSREIVNRQIHDVVQSCQPGEVVIRDNLYRLGVAQIKTEAQEDGEEEGASVAE", "length": 1278, "header": "tr|A0A9J7JGH3-1|A0A9J7JGH3_CRIGR Isoform 1 of HMG domain-containing protein 3 isoform X1 OS=Cricetulus griseus OX=10029 GN=Hmgxb3 PE=4 SV=1 CANONICAL=A0A9J7JGH3-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MUY6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MUY6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A8C2MUY6", "url": "https://www.uniprot.org/uniprotkb/A0A8C2MUY6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100764075", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764075", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "DNA binding", "id": "GO:0003677", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003677", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JGH3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGH3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JGH3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGH3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1211, "end_pos": 1213, "annotation": "n_glycosylation_sequon" }, { "start_pos": 241, "end_pos": 243, "annotation": "n_glycosylation_sequon" }, { "start_pos": 274, "end_pos": 276, "annotation": "n_glycosylation_sequon" }, { "start_pos": 384, "end_pos": 386, "annotation": "n_glycosylation_sequon" }, { "start_pos": 458, "end_pos": 460, "annotation": "n_glycosylation_sequon" }, { "start_pos": 577, "end_pos": 579, "annotation": "n_glycosylation_sequon" }, { "start_pos": 655, "end_pos": 657, "annotation": "n_glycosylation_sequon" }, { "start_pos": 693, "end_pos": 695, "annotation": "n_glycosylation_sequon" }, { "start_pos": 708, "end_pos": 710, "annotation": "n_glycosylation_sequon" }, { "start_pos": 716, "end_pos": 718, "annotation": "n_glycosylation_sequon" }, { "start_pos": 976, "end_pos": 978, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JGH3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGH3" }, { "id": "PS50118", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50118" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "HMG box", "eco_id": "ECO_0000259", "start_pos": 41, "end_pos": 99, "start_aa": "Ala", "end_aa": "Glu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1211, "end_pos": 1213 }, { "start_pos": 241, "end_pos": 243 }, { "start_pos": 274, "end_pos": 276 }, { "start_pos": 384, "end_pos": 386 }, { "start_pos": 458, "end_pos": 460 }, { "start_pos": 577, "end_pos": 579 }, { "start_pos": 655, "end_pos": 657 }, { "start_pos": 693, "end_pos": 695 }, { "start_pos": 708, "end_pos": 710 }, { "start_pos": 716, "end_pos": 718 }, { "start_pos": 976, "end_pos": 978 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7JEX2-1", "uniprot_ac": "A0A9J7JEX2", "uniprot_id": "A0A9J7JEX2_CRIGR", "mass": { "chemical_mass": 54982.0, "monoisotopic_mass": 54982.0 }, "refseq": { "ac": "XP_027256657", "name": "coiled-coil domain-containing protein 112 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256657" }, "gene_names": [ { "name": "Ccdc112", "type": "recommended", "evidence": [ { "id": "A0A9J7JEX2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEX2" } ] }, { "name": "Ccdc112", "type": "synonym", "evidence": [ { "id": "XP_027256657", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256657" } ] } ], "protein_names": [ { "name": "Coiled-coil domain-containing protein 112 isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7JEX2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEX2/entry#names_and_taxonomy" } ] }, { "name": "coiled-coil domain-containing protein 112 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027256657", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256657" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027256657", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256657" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JEX2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEX2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ccdc112", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEX2", "locus": {} } ], "crossref": [ { "id": "A0A9J7JEX2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JEX2", "database": "AlphaFoldDB", "categories": [] }, { "id": "100759442", "url": "https://www.ncbi.nlm.nih.gov/gene/100759442", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR039902", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039902", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100759442", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759442", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JEX2", "url": "https://www.orthodb.org/?gene=A0A9J7JEX2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21549", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21549", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21549:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21549:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_027256657", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027256657", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FCW7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCW7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FCW7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FCW7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FGB0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGB0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FGB0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGB0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JEX2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEX2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JEX2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEX2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKKAEFIRTAEKLKNQVIVIEKDKHSHFYNQRGDFRTEHCMLEELENKLINSRKTERAKIQQQLAKIHNNVKKLQHQLKDVKPTPDFVEKLREMMEEIENAINTFKEEQRLIYEELIQEEKATNNELSAISRKIDSWALGNSETEKAFRAISSKVPVARVIPSTLPEEVIEFERFLQQTGGRQGGWDDFDHQNFMKLRNKHKGKPAFLKEVVEHLPGRTLDEVQQHEKWYQKFLALEERKKESIQNWKTKKQQKKEEILKLKEKADTAPMPSHSKPEDNQKQKEEQRKKQKLAVEAWKKQKSIEMSMKHASQLKEEEERERKQQKERQRQCKLKLLLESYTQQKKEQEEFLRLEKEIKEKTEKAEKRKTAADEISRFQERDLHKLELKILDRQSKEEEKAEKQRRLAKLKEKVENNVSRDPSRLYKPTKGWEERTKKIGPSGSGPLLHIPHRAIPSWRQGI", "length": 461, "header": "tr|A0A9J7JEX2-1|A0A9J7JEX2_CRIGR Isoform 1 of Coiled-coil domain-containing protein 112 isoform X2 OS=Cricetulus griseus OX=10029 GN=Ccdc112 PE=4 SV=1 CANONICAL=A0A9J7JEX2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FCW7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEX2/entry#A0A9J7FCW7-1", "sequence": { "sequence": "MKKAEFIRTAEKLKNQVIVIEKDKHSHFYNQRGDFRTEHCMLEELENKLINSRKTEIVEKLREMMEEIENAINTFKEEQRLIYEELIQEEKATNNELSAISRKIDSWALGNSETEKAFRAISSKVPVARVIPSTLPEEVIEFERFLQQTGGRQGGWDDFDHQNFMKLRNKHKGKPAFLKEVVEHLPGRTLDEVQQHEKWYQKFLALEERKKESIQNWKTKKQQKKEEILKLKEKADTAPMPSHSKPEDNQKQKEEQRKKQKLAVEAWKKQKSIEMSMKHASQLKEEEERERKQQKERQRQCKLKLLLESYTQQKKEQEEFLRLEKEIKEKTEKAEKRKTAADEISRFQERDLHKLELKILDRQSKEEEKAEKQRRLAKLKEKVENNVSRDPSRLYKPTKGWEERTKKIGPSGSGPLLHIPHRAIPSWRQGI", "length": 431, "header": "tr|A0A9J7FCW7-1|A0A9J7JEX2_CRIGR Computationally mapped isoform of Coiled-coil domain-containing protein 112 isoform X2 OS=Cricetulus griseus OX=10029 GN=Ccdc112 PE=4 SV=1 CANONICAL=A0A9J7JEX2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FGB0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEX2/entry#A0A9J7FGB0-1", "sequence": { "sequence": "MKKAEFIRTAEKLKNQVIVIEKDKHSHFYNQRGDFRTEHCMLEELENKLINSRKTERAKIQQQLAKIHNNVKKLQHQLKDVKPTPDFVEKLREMMEEIENAINTFKEEQRLIYEELIQEEKATNNELSAISRKIDSWALGNSETEKAFRAISSKVPVARVIPSTLPEEVIEFERFLQQTGGRQGGWDDFDHQNFMKLRNKHKGKPAFLKEVVEHLPGRTLDEVQQHEKWYQKFLALEERKKESIQNWKTKKQQKKEEILKLKEKADTAPMPSHSKPEDNQKQKEEQRKKQKLAVEAWKKQKSIEMSMKHASQLKEEEERERKQQKERQRQCKLKLLLESYTQQKKEQEEFLRLEKEIKEKTEKAEKRKTAADEISRFQERVENNVSRDPSRLYKPTKGWEERTKKIGPSGSGPLLHIPHRAIPSWRQGI", "length": 429, "header": "tr|A0A9J7FGB0-1|A0A9J7JEX2_CRIGR Computationally mapped isoform of Coiled-coil domain-containing protein 112 isoform X2 OS=Cricetulus griseus OX=10029 GN=Ccdc112 PE=4 SV=1 CANONICAL=A0A9J7JEX2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JEX2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEX2/entry#A0A9J7JEX2-1", "sequence": { "sequence": "MKKAEFIRTAEKLKNQVIVIEKDKHSHFYNQRGDFRTEHCMLEELENKLINSRKTERAKIQQQLAKIHNNVKKLQHQLKDVKPTPDFVEKLREMMEEIENAINTFKEEQRLIYEELIQEEKATNNELSAISRKIDSWALGNSETEKAFRAISSKVPVARVIPSTLPEEVIEFERFLQQTGGRQGGWDDFDHQNFMKLRNKHKGKPAFLKEVVEHLPGRTLDEVQQHEKWYQKFLALEERKKESIQNWKTKKQQKKEEILKLKEKADTAPMPSHSKPEDNQKQKEEQRKKQKLAVEAWKKQKSIEMSMKHASQLKEEEERERKQQKERQRQCKLKLLLESYTQQKKEQEEFLRLEKEIKEKTEKAEKRKTAADEISRFQERDLHKLELKILDRQSKEEEKAEKQRRLAKLKEKVENNVSRDPSRLYKPTKGWEERTKKIGPSGSGPLLHIPHRAIPSWRQGI", "length": 461, "header": "tr|A0A9J7JEX2-1|A0A9J7JEX2_CRIGR Isoform 1 of Coiled-coil domain-containing protein 112 isoform X2 OS=Cricetulus griseus OX=10029 GN=Ccdc112 PE=4 SV=1 CANONICAL=A0A9J7JEX2-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 84, "start_aa": "Thr", "end_pos": 84, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr84", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027257486", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257486" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JGY8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGY8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ankdd1b", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGY8", "locus": {} } ], "crossref": [ { "id": "A0A9J7JGY8", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JGY8", "database": "AlphaFoldDB", "categories": [] }, { "id": "100773274", "url": "https://www.ncbi.nlm.nih.gov/gene/100773274", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": 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"categories": [ "Protein Classification" ] }, { "id": "PTHR24166", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24166", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24166:SF48", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24166:SF48", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24198", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24198", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24198:SF165", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24198:SF165", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00023", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00023", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12796", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12796", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027257486", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257486", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FFB6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFB6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FFB6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFB6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FH70", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FH70", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FH70-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FH70-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FHF9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHF9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FHF9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHF9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": 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"sequence": { "sequence": "MNPNSSQGHGARALMFQAARGLRADLRGASTGPWRSLARMSKPERTDLEAAVAGHECLLPIERSFQNAAKSNDLALMEKLFEKKVNINAVNNMNRTALHFAVAKNHLSAVDFLLSHKARVDVADKHGLTVIHLAAWSGSFEIMLMLVKAGADQRAKSQEGMNALHFAAQNNNPHIVDYLIQDLHLQDLNQPNERGRKPFLLAAERGHVEMIEKLVFLNLHSLEKDKEGNTALHLAAMHGHSPVVQVLLTQWLEVNETNENGETPFMLAVEGGHEECSRVLLEGGSDVNIPNKLNVSALQTATRNGHTSLVNFLLSENADLQRQKEPKESPLHLAVINNHPTVVNSLLSARHDVDILDQRQQTPLHVAADLGNVELVETLLKAGCDLKITDKQGKTALAVAARSHHSLIVDMLIKAERYYAWREDHSLETRHIRTLLWNLAYQQFKEKDWQRLARLWSFTEDQIRAIEEQWSGNKSFREHGYRALLIWLHGTLMTQPDPVKLLYEELLRAGFLESAEKIRQFKGKTDPSSKKCAVS", "length": 535, "header": "tr|A0A9J7FHF9-1|A0A9J7JGY8_CRIGR Computationally mapped isoform of Ankyrin repeat and death domain-containing protein 1B isoform X1 OS=Cricetulus griseus OX=10029 GN=Ankdd1b PE=4 SV=1 CANONICAL=A0A9J7JGY8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JGY8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGY8/entry#A0A9J7JGY8-1", "sequence": { "sequence": "MNPNSSQGHGARALMFQAARGLRADLRGASTGPWRSLARMSKPERTDLEAAVAGHECLLPIERSFQNAAKSNDLALMEKLFEKKVNINAVNNMNRTALHFAVAKNHLSAVDFLLSHKARVDVADKHGLTVIHLAAWSGSFEIMLMLVKAGADQRAKSQEGMNALHFAAQNNNPHIVDYLIQDLHLQDLNQPNERGRKPFLLAAERGHVEMIEKLVFLNLHSLEKDKEGNTALHLAAMHGHSPVVQVLLTQWLEVNETNENGETPFMLAVEGGHEECSRVLLEGGSDVNIPNKLNVSALQTATRNGHTSLVNFLLSENADLQRQKEPKESPLHLAVINNHPTVVNSLLSARHDVDILDQRQQTPLHVAADLGNVELVETLLKAGCDLKITDKQGKTALAVAARSHHSLIVDMLIKAERYYAWREEHRESIQDSAGSSPLTFKQDHSLETRHIRTLLWNLAYQQFKEKDWQRLARLWSFTEDQIRAIEEQWSGNKSFREHGYRALLIWLHGTLMTQPDPVKLLYEELLRAGFLESAEKIRQFKGKTDPSSKKCAVS", "length": 554, "header": "tr|A0A9J7JGY8-1|A0A9J7JGY8_CRIGR Isoform 1 of Ankyrin repeat and death domain-containing protein 1B isoform X1 OS=Cricetulus griseus OX=10029 GN=Ankdd1b PE=4 SV=1 CANONICAL=A0A9J7JGY8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FFB6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFB6" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FFB6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FFB6" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100773274", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100773274", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JGY8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGY8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 255, "end_pos": 257, "annotation": "n_glycosylation_sequon" }, { "start_pos": 294, "end_pos": 296, "annotation": "n_glycosylation_sequon" }, { "start_pos": 492, "end_pos": 494, "annotation": "n_glycosylation_sequon" }, { "start_pos": 4, "end_pos": 6, "annotation": "n_glycosylation_sequon" }, { "start_pos": 94, "end_pos": 96, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JGY8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGY8" }, { "id": "PS50017", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50017" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Death", "eco_id": "ECO_0000259", "start_pos": 467, "end_pos": 541, "start_aa": "Asp", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 255, "end_pos": 257 }, { "start_pos": 294, "end_pos": 296 }, { "start_pos": 492, "end_pos": 494 }, { "start_pos": 4, "end_pos": 6 }, { "start_pos": 94, "end_pos": 96 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { 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"https://www.uniprot.org/uniprotkb/A0A9J7JGQ5" } ] }, { "name": "Rictor", "type": "synonym", "evidence": [ { "id": "XP_027257148", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257148" } ] } ], "protein_names": [ { "name": "Rapamycin-insensitive companion of mTOR isoform X4", "type": "synonym", "evidence": [ { "id": "A0A9J7JGQ5", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGQ5/entry#names_and_taxonomy" } ] }, { "name": "rapamycin-insensitive companion of mTOR isoform X4", "type": "synonym", "evidence": [ { "id": "XP_027257148", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257148" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027257148", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257148" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JGQ5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGQ5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Rictor", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGQ5", "locus": {} } ], "crossref": [ { "id": "100750773", "url": "https://www.ncbi.nlm.nih.gov/gene/100750773", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011989", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011989", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR016024", "url": "https://www.ebi.ac.uk/interpro/entry/IPR016024", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028267", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028267", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR028268", "url": "https://www.ebi.ac.uk/interpro/entry/IPR028268", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029259", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029259", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029451", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029451", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029452", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029452", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR029453", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029453", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100750773", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100750773", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FGR3", "url": "https://www.orthodb.org/?gene=A0A9J7FGR3", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JGQ5", "url": "https://www.orthodb.org/?gene=A0A9J7JGQ5", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR13298", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13298", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR13298:SF11", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13298:SF11", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF14663", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14663", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14664", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14664", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14665", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14665", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14666", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14666", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF14668", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF14668", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027257148", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257148", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A8C2LPM3", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LPM3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A8C2LPM3-1", "url": "https://www.uniprot.org/uniprotkb/A0A8C2LPM3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FGR3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGR3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FGR3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGR3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GTA0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GTA0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GTA0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GTA0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JGQ5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGQ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JGQ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGQ5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAIGRGRSLKNLRIRGRNDSGEENVPLDLTREPSDNLREILQNVAKLQGVSNMRKLGHLNNFTKLLCDIGHSEEKLGFNYEDIIICLRLALLNEAKEVRAAGLRALRYLIQDSSILQKVLRLKVDYLIARCIDIQQSNEVERTQALRLVRKMITVNASLFPSSVANSLIAVGNDGLQERDRMVRACIAIICELALQNPEVVAIRGGLNTILKNVIDCQLSRINEALITTILHLLNHPKTRQYVRADVELERILAPYTDFHYRHSPDTAEGQLKEDREARFLASKMGIIATFRSWAGIINLCKPGNSGIQSLIGILCIPNMEIRRGLLEVLYDIFRLPLPVVTDEFIEALLSVDPGRFQDSWRLSDGFVAAEAKTILPHRARSRPDLMDNYLALILSAFIRNGLLEGLVEVITNSDEHISVRATILLGELLHMANTILPHSHSHHLHCLPTLMNMAASFDIPKEKRLRASAALNCLKRFHEMKKRGPKPYSLHLDHIVQKAIATHQKRDQYLRVQKDIFVLKDTEEALLINLRDSQVLQHKENLEWNWNLIGTILKWPNVNLRNYKDEQLHRFVRRLLYFYKPSSKLYASLDLDFAKSKQLTVVGCQFTEFLLESEEDGQGYLEDLVKDIVQWLNASSGMKPERSLQNNGLLTTLSQHYFLFIGTLSCHPHGVKMLEKCSVFQCLLNLCSLKNQDHLLKLTVSSLDYSRDGLARVILSKILTAATDACRLYATKHLRVLLRANVEFFNNWGIELLVTQLHDKNKTISSEALDILDEACEDKANLHALIQMKPALSHLGDKGLLLLLRFLSIPKGFSYLNERGYVAKQLEKWHKEYNSKYVDLIEEQLNEALTTYRKPIDGDNYVRRSNQRLQRPHVYLPVHLYGQLVHHKTGCHLLEVQNVITELCHNVRTPDLDKWEEIKKLKAALWALGNIGSSNWGLNLLQEENVIPDILKLAKQCEVLSIRGTCVYVLGLIAKTKQGCDILKCHSWDSVRHNRKHLWPVVPDDVEQLCNELSSVPSTLSLNSESTSSRHNSESESAPSSMFILEDDRFGSSSTSTFFLDINEDAEPAFYDRPGPIKDKNSFPFFASSKLVKNRILNSLTLPNKKHRSSSDPKGGKLSSENKTSNRRIRTLTEPSVDFNHSDDFTPISTAQKTLQLETSFVGNKHLEDTGSTPSIGENDLKFPKSFGAENHRENTSRERLVVETSTSSHMKIRSQSFNTDTTTSGISSMSSSPSRETVGVDPTTMDTDCGSMSTVVSTKTVKTSHYLTPQSNHLSLSKSNSVSLVPPGSSHTLPRRAQSLKAPSIATIKSLADCNFSYTSSRDAFGYATLKRLQQQRMHPSLSHSEALASPAKDVLFTDTITMKANSFESRLTPSRIDFKKKHVGGIRSLRPTITNNLFRFMKALSYASLDKEDLLSPINQNTLQRSSSVRSMVSSATYGGSDDYIGLALPVDINDIFQIKDIPYFQSKHVPPPDDRGARMFSHDSGGLPSGTGGLVKNSFHLLRQQMSLTEIMNSVHSDASLFLESTEDTGLQEHTDDNCLYCVCIEILGFQPSNQLSSICSHSDLQDIPYSDWCEQTIHNPLEVVPSKFSGISGCSDGASQEGSASSTKSTELLLGVKTIPDDTPMCRILLRKEVLRLVVNLSSSVSTKCHETGLLTIKEKYPQTFDDICLYSEVSHLLAHCTFRLQCRRFIQELFQDVQFLQMHEEAEAVLAIPPKQPIVDESDES", "length": 1732, "header": "tr|A0A9J7JGQ5-1|A0A9J7JGQ5_CRIGR Isoform 1 of Rapamycin-insensitive companion of mTOR isoform X4 OS=Cricetulus griseus OX=10029 GN=Rictor PE=3 SV=1 CANONICAL=A0A9J7JGQ5-1" }, "isoforms": [ { "isoform_ac": "A0A8C2LPM3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGQ5/entry#A0A8C2LPM3-1", "sequence": { "sequence": "MAAIGRGRSLKNLRIRGRNDSGEENVPLDLTREPSDNLREILQNVAKLQGVSNMRKLGHLNNFTKLLCDIGHSEEKLGFNYEDIIICLRLALLNEAKEVRAAGLRALRYLIQDSSILQKVLRLKVDYLIARCIDIQQSNEVERTQALRLVRKMITVNASLFPSSVANSLIAVGNDGLQERDRMVRACIAIICELALQNPEVVAIRGGLNTILKNVIDCQLSRINEALITTILHLLNHPKTRQYVRADVELERILAPYTDFHYRHSPDTAEGQLKEDREARFLASKMGIIATFRSWAGIINLCKPGNSGIQSLIGILCIPNMEIRRGLLEVLYDIFRLPLPVVTDEFIEALLSVDPGRFQDSWRLSDGFVAAEAKTILPHRARSRPDLMDNYLALILSAFIRNGLLEGLVEVITNSDEHISVRATILLGELLHMANTILPHSHSHHLHCLPTLMNMAASFDIPKEKRLRASAALNCLKRFHEMKKRGPKPYSLHLDHIVQKAIATHQKRDQYLRVQKDIFVLKDTEEALLINLRDSQVLQHKENLEWNWNLIGTILKWPNVNLRNYKDEQLHRFVRRLLYFYKPSSKLYASLDLDFAKSKQLTVVGCQFTEFLLESEEDGQGYLEDLVKDIVQWLNASSGMKPERSLQNNGLLTTLSQHYFLFIGTLSCHPHGVKMLEKCSVFQCLLNLCSLKNQDHLLKLTVSSLDYSRDGLARVILSKILTAATDACRLYATKHLRVLLRANVEFFNNWGIELLVTQLHDKNKTISSEALDILDEACEDKANLHALIQMKPALSHLGDKGLLLLLRFLSIPKGFSYLNERGYVAKQLEKWHKEYNSKYVDLIEEQLNEALTTYRKPIDGDNYVRRSNQRLQRPHVYLPVHLYGQLVHHKTGCHLLEVQNVITELCHNVRTPDLDKWEEIKKLKAALWALGNIGSSNWGLNLLQEENVIPDILKLAKQCEVLSIRGTCVYVLGLIAKTKQGCDILKCHSWDSVRHNRKHLWPVVPDDVEQLCNELSSVPSTLSLNSESTSSRHNSESESAPSSMFILEDDRFGSSSTSTFFLDINEDAEPAFYDRPGPIKDKNSFPFFASSKLVKNRILNSLTLPNKKHRSSSDPKGGKLSSENKTSNRRIRTLTEPSVDFNHSDDFTPISTAQKTLQLETSFVGNKHLEDTGSTPSIGENDLKFPKSFGAENHRENTSRERLVVETSTSSHMKIRSQSFNTDTTTSGISSMSSSPSRETVGVDPTTMDTDCGSMSTVVSTKTVKTSHYLTPQSNHLSLSKSNSVSLVPPGSSHTLPRRAQSLKAPSIATIKSLADCNFSYTSSRDAFGYATLKRLQQQRMHPSLSHSEALASPAKDVLFTDTITMKANSFESRLTPSRFMKALSYASLDKEDLLSPINQNTLQRSSSVRSMVSSATYGGSDDYIGLALPVDINDIFQIKDIPYFQSKHVPPPDDRGARMFSHDSGGLPSGTGGLVKNSFHLLRQQMSLTEIMNSVHSDASLFLESTEDTGLQEHTDDNCLYCVCIEILGFQPSNQLSSICSHSDLQDIPYSDWCEQTIHNPLEVVPSKFSGISGCSDGASQEGSASSTKSTELLLGVKTIPDDTPMCRILLRKEVLRLVVNLSSSVSTKCHETGLLTIKEKYPQTFDDICLYSEVSHLLAHCTFRLQCRRFIQELFQDVQFLQMHEEAEAVLAIPPKQPIVDESDES", 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Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FGR3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGR3" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FGR3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGR3" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100750773", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100750773", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 8, "go_terms": [ { "name": "positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction", "id": "GO:0051897", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051897", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JGQ5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGQ5" } ], "pmid": "" }, { "name": "TORC2 signaling", "id": "GO:0038203", "url": 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"o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7JGM8-1", "uniprot_ac": "A0A9J7JGM8", "uniprot_id": "A0A9J7JGM8_CRIGR", "mass": { "chemical_mass": 278900.0, "monoisotopic_mass": 278900.0 }, "refseq": { "ac": "XP_007642427", "name": "PDZ domain-containing protein 2 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007642427" }, "gene_names": [ { "name": "Pdzd2", "type": "recommended", "evidence": [ { "id": "A0A9J7JGM8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGM8" } ] }, { "name": "Pdzd2", "type": "synonym", "evidence": [ { "id": "XP_007642427", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007642427" } ] } ], "protein_names": [ { "name": "PDZ domain-containing protein 2 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007642427", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007642427" }, { "id": "A0A9J7JGM8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGM8/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613986.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 27, 2016 this sequence version replaced XP_007642427.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007642427", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007642427" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JGM8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGM8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Pdzd2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGM8", "locus": {} } ], "crossref": [ { "id": "cd06758", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06758", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd06759", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06759", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd06760", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06760", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd06762", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06762", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd06763", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06763", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100774098", "url": "https://www.ncbi.nlm.nih.gov/gene/100774098", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001478", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001478", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036034", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036034", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100774098", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774098", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FGT9", "url": "https://www.orthodb.org/?gene=A0A9J7FGT9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JGM8", "url": "https://www.orthodb.org/?gene=A0A9J7JGM8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR11324", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11324", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR11324:SF16", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11324:SF16", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00595", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00595", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007642427", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007642427", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FGT9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGT9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FGT9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGT9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GRV6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GRV6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GRV6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GRV6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JGM8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGM8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JGM8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGM8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JV78", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JV78", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JV78-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JV78-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K3V3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3V3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K3V3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K3V3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K5A5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K5A5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K5A5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K5A5-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLRRFKHKTQLTYNGNDGNSSEPGETPTLELGDQTSKKGKRTRKFGVISRPPISKAPEEPKSSSGCDVTGDPSSELENGTDPELGNGHDFELENSPHSLKDVAGPHLERSEVDRGAELRIPNTEAPLGTSNDKRRVSKSGKTDFQSSDCLAREEVGRIWKMELLKETDGLGIQVSGGRGSKRSPHAIVVTQVKEGGAAHRDGRLSLGDELLVINGHLLVGLSHEEAVAILRSATGMVQLVVASKESSAEDLLRFTSKSLPDLTSSAEDVSSWTDNEDQEADGEDEEGTGPAAVRGMMPESEESHDVGSSEESKGSLESPKQGNSKMKLKSRLSGGVHRLESVEEYNELMVRNGDPRIRMLEVSRDGRKHSLPQLLDSTGTSQEYHIVKKSTRSLSTTHVESPWRLIRPSVISIIGLYKEKGKGLGFSIAGGRDCIRGQMGIFVKTIFPNGSAAEDGRLKEGDEILDVNGIPIKGLTFQEAIHTFKQIRSGLFVLTVRTKLLSPSLTPCSTPTHMSRSSSPSFNTSGGPPTGGGPDEGGSASLGRKAPGPKDRIVMEVTLNKEPRVGLGIGACCLALENSPPGIYIHSLAPGSVAKMESNLSRGDQILEVNSVNVRHAALSKVHSILSKCPPGPVRLVIGRHPNPKVSEQEMDEVIARSTYQESKEANSSPGLGTPLKSPSLAKKDSLLSESELSQYFVHDGRGSLSDFVVAGSEDEDHPGSGCGTSDDGSLLPGPSAHKEPGKARANSLVTLGSQRTSGLLHKQVTVARQASLPGSPQVLRNPLLRQRRVRCYDGNDASDEEDFDGEGDCISLPGVLPDPSKSLIEDNTRLALTASSKSVDANKREERPQKPLVSKACSVPLLGSSLDLEHSIPDGMTGTPPKAVSLPGSVETPKSGPGGPGRKELSGSRSSPKLEYSVTTHSPRSPENPISPPQKNANLVSRHKPVARISPHHQRSDTEAPSGTANGPCSQDLKVQVPSMKDTVTGHQPSGTTEKDLWGNPTPGDRYVPTNCGPASTPCHPNTGLPTESLQGAAPECGPHPETERDGSSAPPSPGKSREAHHDSSETSTVTEQVSQSVSPRTTEPESQGISKVKPASKRSPSPREKALAPPDFRRTWAAPGDSSPDTRRAAVPMNTGATPATAIPHVSLVSQERSRGPSKTLETSGLSIPKSWKDGAPLEDTACMSEKTSPASPSLPVATDSTMSKSRESPVTDIDNFIREASEVRSQSSQKASCGAHPGIFEDQPPEGTRDGSSYHAQSVRSDQTSSPRKTGGTAPPPPPQWASQPSVLDSIHPDKHFAVNKNFLNNYSRNFSNFHEDNISLSGPGDSTEPSLSSMYGDAEDSSSDPESLAEAPQAAARNSWSPPHSHGSSHQEGTSESEDEHIEICSTSGCPETPVTAHPPAQAALCRVLPLQHSALSEPVADSCERACFLPGTSHISIPSSSQPFSFLDVSSQEHEPWVSINASQSQGPSCTEEIMATTGMSSVTADRQPSEMTSHGHNLPFALRNPNVVNGLECDLLAEGPPNEEAAAASVMHSVYVLGTEGPKNGEAVLANLHVAKSRNLDDLLQKPKSISRRPIMAWFKEINKTSQGTHSQSKSEKEQSSMLATSPGYKAQIVGTSHSKGVAVLKSPPPLHKSQENKDLPKKSPVETLSNCQKPKCGPKLRRLSGKSKAGPETPVASSVKATGTDHRKTLISPQASHKMFSKAVSQRLHIADQEEPANTLVDTPKPPQCMPEGKPPLAASGSPRTSASDTSIRPFALPLTSPKTVPQQSASSRFHMAVYSESGTSCPTTSRSPRCGAEGKVPPGDSGSSSPTAPRNSLALTGTRQSKHLTPSRVDLVVSEAAQPRGTSEKGSEKITSDLLERTTQLKTVDISPERMPKNAGGDKPPNGDRQGGFLTQSSCQEKNGTSLRQSGESVPKHLPSSPSQASQVEQEMCWSFRVAKPASSPKLPAKTLDSSQGRSSQMPASSGMPKNDVPPGPRGEEHPYFTPRPATRTYSMPAQFSSHFGREGPSPNSPSRSPQDPQVPVMSISVSEAKAAKGVTNGQGVYSVKPLLEMSRNLPPTDGGDTCAVPETSGIIADKVKATRRHYYYEHNWPHESTSFFSVKQRIKSFENLANSDRPAAKSTTSPFLSVNSKPLISRRSSGSITSGSLSHPSDVSARSLRRSLSSCSESQSEASSLLPQMTKSPSSVTLVVSKQNPPETGKSPSSDPKKSLVPVGIPSSTVTPASPTKRNKSSVRHSQPSPVSRSKLQELRALSMPDLDKLCGGEEYSAGPGSVLFKTQLEIIPRRSLGSPATSPAGSPARGHPGLDGSASLSCPMNGRTKVCPGENYPSASEPAVSPGAREGDEAVQALPSGRSWSVNLNQLLASAGDQQKLQTVLSLVGSKSTIFTLMQEAKAQSENKEDTCFIVLNKKEGSGLGFSVAGGADVEPKSVMVHRVFSQGVASQEGTMSRGDFLLSINGTSLAGLAHSEVAKVLHQAQLHKHALMIIKKGNDQPRPSLRQEPPSANGKGPLSRKTLPLEPGAGRNGAAHDALCVEVLKTSAGLGLSLDGGKSSVSGDGPLVIKRVYKGGAAEQAGTIEAGDEILAINGKPLVGLVHFDAWNIMKSVPEGPVQLVIRKHRNS", "length": 2631, "header": "tr|A0A9J7JGM8-1|A0A9J7JGM8_CRIGR Isoform 1 of PDZ domain-containing protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Pdzd2 PE=4 SV=1 CANONICAL=A0A9J7JGM8-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FGT9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGM8/entry#A0A9J7FGT9-1", "sequence": { "sequence": "MWLDPIWRGLKWTEEQNSEFQIQKLLWVPAMTNAASQRVGRQTSSPVTAWHGRKLAGYGRWSYSKKQMGWEFRDGRLSLGDELLVINGHLLVGLSHEEAVAILRSATGMVQLVVASKESSAEDLLRFTSKSLPDLTSSAEDVSSWTDNEDQEADGEDEEGTGPAAVRGMMPESEESHDVGSSEESKGSLESPKQGNSKMKLKSRLSGGVHRLESVEEYNELMVRNGDPRIRMLEVSRDGRKHSLPQLLDSTGTSQEYHIVKKSTRSLSTTHVESPWRLIRPSVISIIGLYKEKGKGLGFSIAGGRDCIRGQMGIFVKTIFPNGSAAEDGRLKEGDEILDVNGIPIKGLTFQEAIHTFKQIRSGLFVLTVRTKLLSPSLTPCSTPTHMSRSSSPSFNTSGGPPTGGGPDEGGSASLGRKAPGPKDRIVMEVTLNKEPRVGLGIGACCLALENSPPGIYIHSLAPGSVAKMESNLSRGDQILEVNSVNVRHAALSKVHSILSKCPPGPVRLVIGRHPNPKVSEQEMDEVIARSTYQESKEANSSPGLGTPLKSPSLAKKDSLLSESELSQYFVHDGRGSLSDFVVAGSEDEDHPGSGCGTSDDGSLLPGPSAHKEPGKARANSLVTLGSQRTSGLLHKQVTVARQASLPGSPQVLRNPLLRQRRVRCYDGNDASDEEDFDGEGDCISLPGVLPDPSKSLIEDNTRLALTASSKSVDANKREERPQKPLVSKACSVPLLGSSLDLEHSIPDGMTGTPPKAVSLPGSVETPKSGPGGPGRKELSGSRSSPKLEYSVTTHSPRSPENPISPPQKNANLVSRHKPVARISPHHQRSDTEAPSGTANGPCSQDLKVQVPSMKDTVTGHQPSGTTEKDLWGNPTPGDRYVPTNCGPASTPCHPNTGLPTESLQGAAPECGPHPETERDGSSAPPSPGKSREAHHDSSETSTVTEQVSQSVSPRTTEPESQGISKVKPASKRSPSPREKALAPPDFRRTWAAPGDSSPDTRRAAVPMNTGATPATAIPHVSLVSQERSRGPSKTLETSGLSIPKSWKDGAPLEDTACMSEKTSPASPSLPVATDSTMSKSRESPVTDIDNFIREASEVRSQSSQKASCGAHPGIFEDQPPEGTRDGSSYHAQSVRSDQTSSPRKTGGTAPPPPPQWASQPSVLDSIHPDKHFAVNKNFLNNYSRNFSNFHEDNISLSGPGDSTEPSLSSMYGDAEDSSSDPESLAEAPQAAARNSWSPPHSHGSSHQEGTSESEDEHIEICSTSGCPETPVTAHPPAQAALCRVLPLQHSALSEPVADSCERACFLPGTSHISIPSSSQPFSFLDVSSQEHEPWVSINASQSQGPSCTEEIMATTGMSSVTADRQPSEMTSHGHNLPFALRNPNVVNGLECDLLAEGPPNEEAAAASVMHSVYVLGTEGPKNGEAVLANLHVAKSRNLDDLLQKPKSISRRPIMAWFKEINKTSQGTHSQSKSEKEQSSMLATSPGYKAQIVGTSHSKGVAVLKSPPPLHKSQENKDLPKKSPVETLSNCQKPKCGPKLRRLSGKSKAGPETPVASSVKATGTDHRKTLISPQASHKMFSKAVSQRLHIADQEEPANTLVDTPKPPQCMPEGKPPLAASGSPRTSASDTSIRPFALPLTSPKTVPQQSASSRFHMAVYSESGTSCPTTSRSPRCGAEGKVPPGDSGSSSPTAPRNSLALTGTRQSKHLTPSRVDLVVSEAAQPRGTSEKGSEKITSDLLERTTQLKTVDISPERMPKNAGGDKPPNGDRQGGFLTQSSCQEKNGTSLRQSGESVPKHLPSSPSQASQVEQEMCWSFRVAKPASSPKLPAKTLDSSQGRSSQMPASSGMPKNDVPPGPRGEEHPYFTPRPATRTYSMPAQFSSHFGREGPSPNSPSRSPQDPQVPVMSISVSEAKAAKGVTNGQGVYSVKPLLEMSRNLPPTDGGDTCAVPETSGIIADKVKATRRHYYYEHNWPHESTSFFSVKQRIKSFENLANSDRPAAKSTTSPFLSVNSKPLISRRSSGSITSGSLSHPSDVSARSLRRSLSSCSESQSEASSLLPQMTKSPSSVTLVVSKQNPPETGKSPSSDPKKSLVPVGIPSSTVTPASPTKRNKSSVRHSQPSPVSRSKLQELRALSMPDLDKLCGGEEYSAGPGSVLFKTQLEIIPRRSLGSPATSPAGSPARGHPGLDGSASLSCPMNGRTKVCPGENYPSASEPAVSPGAREGDEAVQALPSGRSWSVNLNQLLASAGDQQKLQTVLSLVGSKSTIFTLMQEAKAQSENKEDTCFIVLNKKEGSGLGFSVAGGADVEPKSVMVHRVFSQGVASQEGTMSRGDFLLSINGTSLAGLAHSEVAKVLHQAQLHKHALMIIKKGNDQPRPSLRQEPPSANGKGPLSRKTLPLEPGAGRNGAAHDALCVEVLKTSAGLGLSLDGGKSSVSGDGPLVIKRVYKGGAAEQAGTIEAGDEILAINGKPLVGLVHFDAWNIMKSVPEGPVQLVIRKHRNS", "length": 2504, "header": "tr|A0A9J7FGT9-1|A0A9J7JGM8_CRIGR Computationally mapped isoform of PDZ domain-containing protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Pdzd2 PE=4 SV=1 CANONICAL=A0A9J7JGM8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GRV6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGM8/entry#A0A9J7GRV6-1", "sequence": { "sequence": "MLRRFKHKTQLTYNGNDGNSSEPGETPTLELGDQTSKKGKRTRKFGVISRPPISKAPEEPKSSSGCDVTGDPSSELENGTDPELGNGHDFELENSPHSLKDVAGPHLERSEVDRGAELRIPNTEAPLGTSNDKRRVSKSGKTDFQSSDCLAREEVGRIWKMELLKETDGLGIQVSGGRGSKRSPHAIVVTQVKEGGAAHRDGRLSLGDELLVINGHLLVGLSHEEAVAILRSATGMVQLVVASKMPESEESHDVGSSEESKGSLESPKQGNSKMKLKSRLSGGVHRLESVEEYNELMVRNGDPRIRMLEVSRDGRKHSLPQLLDSTGTSQEYHIVKKSTRSLSTTHVESPWRLIRPSVISIIGLYKEKGKGLGFSIAGGRDCIRGQMGIFVKTIFPNGSAAEDGRLKEGDEILDVNGIPIKGLTFQEAIHTFKQIRSGLFVLTVRTKLLSPSLTPCSTPTHMSRSSSPSFNTSGGPPTGGGPDEGGSASLGRKAPGPKDRIVMEVTLNKEPRVGLGIGACCLALENSPPGIYIHSLAPGSVAKMESNLSRGDQILEVNSVNVRHAALSKVHSILSKCPPGPVRLVIGRHPNPKVSEQEMDEVIARSTYQESKEANSSPGLGTPLKSPSLAKKDSLLSESELSQYFVHDGRGSLSDFVVAGSEDEDHPGSGCGTSDDGSLLPGPSAHKEPGKARANSLVTLGSQRTSGLLHKQVTVARQASLPGSPQVLRNPLLRQRRVRCYDGNDASDEEDFDGEGDCISLPGVLPDPSKSLIEDNTRLALTASSKSVDANKREERPQKPLVSKACSVPLLGSSLDLEHSIPDGMTGTPPKAVSLPGSVETPKSGPGGPGRKELSGSRSSPKLEYSVTTHSPRSPENPISPPQKNANLVSRHKPVARISPHHQRSDTEAPSGTANGPCSQDLKVQVPSMKDTVTGHQPSGTTEKDLWGNPTPGDRYVPTNCGPASTPCHPNTGLPTESLQGAAPECGPHPETERDGSSAPPSPGKSREAHHDSSETSTVTEQVSQSVSPRTTEPESQGISKVKPASKRSPSPREKALAPPDFRRTWAAPGDSSPDTRRAAVPMNTGATPATAIPHVSLVSQERSRGPSKTLETSGLSIPKSWKDGAPLEDTACMSEKTSPASPSLPVATDSTMSKSRESPVTDIDNFIREASEVRSQSSQKASCGAHPGIFEDQPPEGTRDGSSYHAQSVRSDQTSSPRKTGGTAPPPPPQWASQPSVLDSIHPDKHFAVNKNFLNNYSRNFSNFHEDNISLSGPGDSTEPSLSSMYGDAEDSSSDPESLAEAPQAAARNSWSPPHSHGSSHQEGTSESEDEHIEICSTSGCPETPVTAHPPAQAALCRVLPLQHSALSEPVADSCERACFLPGTSHISIPSSSQPFSFLDVSSQEHEPWVSINASQSQGPSCTEEIMATTGMSSVTADRQPSEMTSHGHNLPFALRNPNVVNGLECDLLAEGPPNEEAAAASVMHSVYVLGTEGPKNGEAVLANLHVAKSRNLDDLLQKPKSISRRPIMAWFKEINKTSQGTHSQSKSEKEQSSMLATSPGYKAQIVGTSHSKGVAVLKSPPPLHKSQENKDLPKKSPVETLSNCQKPKCGPKLRRLSGKSKAGPETPVASSVKATGTDHRKTLISPQASHKMFSKAVSQRLHIADQEEPANTLVDTPKPPQCMPEGKPPLAASGSPRTSASDTSIRPFALPLTSPKTVPQQSASSRFHMAVYSESGTSCPTTSRSPRCGAEGKVPPGDSGSSSPTAPRNSLALTGTRQSKHLTPSRVDLVVSEAAQPRGTSEKGSEKITSDLLERTTQLKTVDISPERMPKNAGGDKPPNGDRQGGFLTQSSCQEKNGTSLRQSGESVPKHLPSSPSQASQVEQEMCWSFRVAKPASSPKLPAKTLDSSQGRSSQMPASSGMPKNDVPPGPRGEEHPYFTPRPATRTYSMPAQFSSHFGREGPSPNSPSRSPQDPQVPVMSISVSEAKAAKGVTNGQGVYSVKPLLEMSRNLPPTDGGDTCAVPETSGIIADKVKATRRHYYYEHNWPHESTSFFSVKQRIKSFENLANSDRPAAKSTTSPFLSVNSKPLISRRSSGSITSGSLSHPSDVSARSLRRSLSSCSESQSEASSLLPQMTKSPSSVTLVVSKQNPPETGKSPSSDPKKSLVPVGIPSSTVTPASPTKRNKSSVRHSQPSPVSRSKLQELRALSMPDLDKLCGGEEYSAGPGSVLFKTQLEIIPRRSLGSPATSPAGSPARGHPGLDGSASLSCPMNGRTKVCPGENYPSASEPAVSPGAREGDEAVQALPSGRSWSVNLNQLLASAGDQQKLQTVLSLVGSKSTIFTLMQEAKAQSENKEDTCFIVLNKKEGSGLGFSVAGGADVEPKSVMVHRVFSQGVASQEGTMSRGDFLLSINGTSLAGLAHSEVAKVLHQAQLHKHALMIIKKGNDQPRPSLRQEPPSANGKGPLSRKTLPLEPGAGRNGAAHDALCVEVLKTSAGLGLSLDGGKSSVSGDGPLVIKRVYKGGAAEQAGTIEAGDEILAINGKPLVGLVHFDAWNIMKSVPEGPVQLVIRKHRNS", "length": 2579, "header": "tr|A0A9J7GRV6-1|A0A9J7JGM8_CRIGR Computationally mapped isoform of PDZ domain-containing protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Pdzd2 PE=4 SV=1 CANONICAL=A0A9J7JGM8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JGM8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGM8/entry#A0A9J7JGM8-1", "sequence": { "sequence": "MLRRFKHKTQLTYNGNDGNSSEPGETPTLELGDQTSKKGKRTRKFGVISRPPISKAPEEPKSSSGCDVTGDPSSELENGTDPELGNGHDFELENSPHSLKDVAGPHLERSEVDRGAELRIPNTEAPLGTSNDKRRVSKSGKTDFQSSDCLAREEVGRIWKMELLKETDGLGIQVSGGRGSKRSPHAIVVTQVKEGGAAHRDGRLSLGDELLVINGHLLVGLSHEEAVAILRSATGMVQLVVASKESSAEDLLRFTSKSLPDLTSSAEDVSSWTDNEDQEADGEDEEGTGPAAVRGMMPESEESHDVGSSEESKGSLESPKQGNSKMKLKSRLSGGVHRLESVEEYNELMVRNGDPRIRMLEVSRDGRKHSLPQLLDSTGTSQEYHIVKKSTRSLSTTHVESPWRLIRPSVISIIGLYKEKGKGLGFSIAGGRDCIRGQMGIFVKTIFPNGSAAEDGRLKEGDEILDVNGIPIKGLTFQEAIHTFKQIRSGLFVLTVRTKLLSPSLTPCSTPTHMSRSSSPSFNTSGGPPTGGGPDEGGSASLGRKAPGPKDRIVMEVTLNKEPRVGLGIGACCLALENSPPGIYIHSLAPGSVAKMESNLSRGDQILEVNSVNVRHAALSKVHSILSKCPPGPVRLVIGRHPNPKVSEQEMDEVIARSTYQESKEANSSPGLGTPLKSPSLAKKDSLLSESELSQYFVHDGRGSLSDFVVAGSEDEDHPGSGCGTSDDGSLLPGPSAHKEPGKARANSLVTLGSQRTSGLLHKQVTVARQASLPGSPQVLRNPLLRQRRVRCYDGNDASDEEDFDGEGDCISLPGVLPDPSKSLIEDNTRLALTASSKSVDANKREERPQKPLVSKACSVPLLGSSLDLEHSIPDGMTGTPPKAVSLPGSVETPKSGPGGPGRKELSGSRSSPKLEYSVTTHSPRSPENPISPPQKNANLVSRHKPVARISPHHQRSDTEAPSGTANGPCSQDLKVQVPSMKDTVTGHQPSGTTEKDLWGNPTPGDRYVPTNCGPASTPCHPNTGLPTESLQGAAPECGPHPETERDGSSAPPSPGKSREAHHDSSETSTVTEQVSQSVSPRTTEPESQGISKVKPASKRSPSPREKALAPPDFRRTWAAPGDSSPDTRRAAVPMNTGATPATAIPHVSLVSQERSRGPSKTLETSGLSIPKSWKDGAPLEDTACMSEKTSPASPSLPVATDSTMSKSRESPVTDIDNFIREASEVRSQSSQKASCGAHPGIFEDQPPEGTRDGSSYHAQSVRSDQTSSPRKTGGTAPPPPPQWASQPSVLDSIHPDKHFAVNKNFLNNYSRNFSNFHEDNISLSGPGDSTEPSLSSMYGDAEDSSSDPESLAEAPQAAARNSWSPPHSHGSSHQEGTSESEDEHIEICSTSGCPETPVTAHPPAQAALCRVLPLQHSALSEPVADSCERACFLPGTSHISIPSSSQPFSFLDVSSQEHEPWVSINASQSQGPSCTEEIMATTGMSSVTADRQPSEMTSHGHNLPFALRNPNVVNGLECDLLAEGPPNEEAAAASVMHSVYVLGTEGPKNGEAVLANLHVAKSRNLDDLLQKPKSISRRPIMAWFKEINKTSQGTHSQSKSEKEQSSMLATSPGYKAQIVGTSHSKGVAVLKSPPPLHKSQENKDLPKKSPVETLSNCQKPKCGPKLRRLSGKSKAGPETPVASSVKATGTDHRKTLISPQASHKMFSKAVSQRLHIADQEEPANTLVDTPKPPQCMPEGKPPLAASGSPRTSASDTSIRPFALPLTSPKTVPQQSASSRFHMAVYSESGTSCPTTSRSPRCGAEGKVPPGDSGSSSPTAPRNSLALTGTRQSKHLTPSRVDLVVSEAAQPRGTSEKGSEKITSDLLERTTQLKTVDISPERMPKNAGGDKPPNGDRQGGFLTQSSCQEKNGTSLRQSGESVPKHLPSSPSQASQVEQEMCWSFRVAKPASSPKLPAKTLDSSQGRSSQMPASSGMPKNDVPPGPRGEEHPYFTPRPATRTYSMPAQFSSHFGREGPSPNSPSRSPQDPQVPVMSISVSEAKAAKGVTNGQGVYSVKPLLEMSRNLPPTDGGDTCAVPETSGIIADKVKATRRHYYYEHNWPHESTSFFSVKQRIKSFENLANSDRPAAKSTTSPFLSVNSKPLISRRSSGSITSGSLSHPSDVSARSLRRSLSSCSESQSEASSLLPQMTKSPSSVTLVVSKQNPPETGKSPSSDPKKSLVPVGIPSSTVTPASPTKRNKSSVRHSQPSPVSRSKLQELRALSMPDLDKLCGGEEYSAGPGSVLFKTQLEIIPRRSLGSPATSPAGSPARGHPGLDGSASLSCPMNGRTKVCPGENYPSASEPAVSPGAREGDEAVQALPSGRSWSVNLNQLLASAGDQQKLQTVLSLVGSKSTIFTLMQEAKAQSENKEDTCFIVLNKKEGSGLGFSVAGGADVEPKSVMVHRVFSQGVASQEGTMSRGDFLLSINGTSLAGLAHSEVAKVLHQAQLHKHALMIIKKGNDQPRPSLRQEPPSANGKGPLSRKTLPLEPGAGRNGAAHDALCVEVLKTSAGLGLSLDGGKSSVSGDGPLVIKRVYKGGAAEQAGTIEAGDEILAINGKPLVGLVHFDAWNIMKSVPEGPVQLVIRKHRNS", "length": 2631, "header": "tr|A0A9J7JGM8-1|A0A9J7JGM8_CRIGR Isoform 1 of PDZ domain-containing protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Pdzd2 PE=4 SV=1 CANONICAL=A0A9J7JGM8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JV78-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGM8/entry#A0A9J7JV78-1", "sequence": { "sequence": "MLRRFKHKTQLTYNGNDGNSSEPGETPTLELGDQTSKKGKRTRKFGVISRPPISKAPEEPKSSSGCDVTGDPSSELENGTDPELGNGHDFELENSPHSLKDVAGPHLERSEVDRGAELRIPNTEAPLGTSNDKRRVSKSGKTDFQSSDCLARESSAEDLLRFTSKSLPDLTSSAEDVSSWTDNEDQEADGEDEEGTGPAAVRGMMPESEESHDVGSSEESKGSLESPKQGNSKMKLKSRLSGGVHRLESVEEYNELMVRNGDPRIRMLEVSRDGRKHSLPQLLDSTGTSQEYHIVKKSTRSLSTTHVESPWRLIRPSVISIIGLYKEKGKGLGFSIAGGRDCIRGQMGIFVKTIFPNGSAAEDGRLKEGDEILDVNGIPIKGLTFQEAIHTFKQIRSGLFVLTVRTKLLSPSLTPCSTPTHMSRSSSPSFNTSGGPPTGGGPDEGGSASLGRKAPGPKDRIVMEVTLNKEPRVGLGIGACCLALENSPPGIYIHSLAPGSVAKMESNLSRGDQILEVNSVNVRHAALSKVHSILSKCPPGPVRLVIGRHPNPKVSEQEMDEVIARSTYQESKEANSSPGLGTPLKSPSLAKKDSLLSESELSQYFVHDGRGSLSDFVVAGSEDEDHPGSGCGTSDDGSLLPGPSAHKEPGKARANSLVTLGSQRTSGLLHKQVTVARQASLPGSPQVLRNPLLRQRRVRCYDGNDASDEEDFDGEGDCISLPGVLPDPSKSLIEDNTRLALTASSKSVDANKREERPQKPLVSKACSVPLLGSSLDLEHSIPDGMTGTPPKAVSLPGSVETPKSGPGGPGRKELSGSRSSPKLEYSVTTHSPRSPENPISPPQKNANLVSRHKPVARISPHHQRSDTEAPSGTANGPCSQDLKVQVPSMKDTVTGHQPSGTTEKDLWGNPTPGDRYVPTNCGPASTPCHPNTGLPTESLQGAAPECGPHPETERDGSSAPPSPGKSREAHHDSSETSTVTEQVSQSVSPRTTEPESQGISKVKPASKRSPSPREKALAPPDFRRTWAAPGDSSPDTRRAAVPMNTGATPATAIPHVSLVSQERSRGPSKTLETSGLSIPKSWKDGAPLEDTACMSEKTSPASPSLPVATDSTMSKSRESPVTDIDNFIREASEVRSQSSQKASCGAHPGIFEDQPPEGTRDGSSYHAQSVRSDQTSSPRKTGGTAPPPPPQWASQPSVLDSIHPDKHFAVNKNFLNNYSRNFSNFHEDNISLSGPGDSTEPSLSSMYGDAEDSSSDPESLAEAPQAAARNSWSPPHSHGSSHQEGTSESEDEHIEICSTSGCPETPVTAHPPAQAALCRVLPLQHSALSEPVADSCERACFLPGTSHISIPSSSQPFSFLDVSSQEHEPWVSINASQSQGPSCTEEIMATTGMSSVTADRQPSEMTSHGHNLPFALRNPNVVNGLECDLLAEGPPNEEAAAASVMHSVYVLGTEGPKNGEAVLANLHVAKSRNLDDLLQKPKSISRRPIMAWFKEINKTSQGTHSQSKSEKEQSSMLATSPGYKAQIVGTSHSKGVAVLKSPPPLHKSQENKDLPKKSPVETLSNCQKPKCGPKLRRLSGKSKAGPETPVASSVKATGTDHRKTLISPQASHKMFSKAVSQRLHIADQEEPANTLVDTPKPPQCMPEGKPPLAASGSPRTSASDTSIRPFALPLTSPKTVPQQSASSRFHMAVYSESGTSCPTTSRSPRCGAEGKVPPGDSGSSSPTAPRNSLALTGTRQSKHLTPSRVDLVVSEAAQPRGTSEKGSEKITSDLLERTTQLKTVDISPERMPKNAGGDKPPNGDRQGGFLTQSSCQEKNGTSLRQSGESVPKHLPSSPSQASQVEQEMCWSFRVAKPASSPKLPAKTLDSSQGRSSQMPASSGMPKNDVPPGPRGEEHPYFTPRPATRTYSMPAQFSSHFGREGPSPNSPSRSPQDPQVPVMSISVSEAKAAKGVTNGQGVYSVKPLLEMSRNLPPTDGGDTCAVPETSGIIADKVKATRRHYYYEHNWPHESTSFFSVKQRIKSFENLANSDRPAAKSTTSPFLSVNSKPLISRRSSGSITSGSLSHPSDVSARSLRRSLSSCSESQSEASSLLPQMTKSPSSVTLVVSKQNPPETGKSPSSDPKKSLVPVGIPSSTVTPASPTKRNKSSVRHSQPSPVSRSKLQELRALSMPDLDKLCGGEEYSAGPGSVLFKTQLEIIPRRSLGSPATSPAGSPARGHPGLDGSASLSCPMNGRTKVCPGENYPSASEPAVSPGAREGDEAVQALPSGRSWSVNLNQLLASAGDQQKLQTVLSLVGSKSTIFTLMQEAKAQSENKEDTCFIVLNKKEGSGLGFSVAGGADVEPKSVMVHRVFSQGVASQEGTMSRGDFLLSINGTSLAGLAHSEVAKVLHQAQLHKHALMIIKKGNDQPRPSLRQEPPSANGKGPLSRKTLPLEPGAGRNGAAHDALCVEVLKTSAGLGLSLDGGKSSVSGDGPLVIKRVYKGGAAEQAGTIEAGDEILAINGKPLVGLVHFDAWNIMKSVPEGPVQLVIRKHRNS", "length": 2539, "header": "tr|A0A9J7JV78-1|A0A9J7JGM8_CRIGR Computationally mapped isoform of PDZ domain-containing protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Pdzd2 PE=4 SV=1 CANONICAL=A0A9J7JGM8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K3V3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGM8/entry#A0A9J7K3V3-1", "sequence": { "sequence": "MWLDPIWRGLKWTEEQNSEFQIQKLLWVPAMTNAASQRVGRQTSSPVTAWHGDGRLSLGDELLVINGHLLVGLSHEEAVAILRSATGMVQLVVASKESSAEDLLRFTSKSLPDLTSSAEDVSSWTDNEDQEADGEDEEGTGPAAVRGMMPESEESHDVGSSEESKGSLESPKQGNSKMKLKSRLSGGVHRLESVEEYNELMVRNGDPRIRMLEVSRDGRKHSLPQLLDSTGTSQEYHIVKKSTRSLSTTHVESPWRLIRPSVISIIGLYKEKGKGLGFSIAGGRDCIRGQMGIFVKTIFPNGSAAEDGRLKEGDEILDVNGIPIKGLTFQEAIHTFKQIRSGLFVLTVRTKLLSPSLTPCSTPTHMSRSSSPSFNTSGGPPTGGGPDEGGSASLGRKAPGPKDRIVMEVTLNKEPRVGLGIGACCLALENSPPGIYIHSLAPGSVAKMESNLSRGDQILEVNSVNVRHAALSKVHSILSKCPPGPVRLVIGRHPNPKVSEQEMDEVIARSTYQESKEANSSPGLGTPLKSPSLAKKDSLLSESELSQYFVHDGRGSLSDFVVAGSEDEDHPGSGCGTSDDGSLLPGPSAHKEPGKARANSLVTLGSQRTSGLLHKQVTVARQASLPGSPQVLRNPLLRQRRVRCYDGNDASDEEDFDGEGDCISLPGVLPDPSKSLIEDNTRLALTASSKSVDANKREERPQKPLVSKACSVPLLGSSLDLEHSIPDGMTGTPPKAVSLPGSVETPKSGPGGPGRKELSGSRSSPKLEYSVTTHSPRSPENPISPPQKNANLVSRHKPVARISPHHQRSDTEAPSGTANGPCSQDLKVQVPSMKDTVTGHQPSGTTEKDLWGNPTPGDRYVPTNCGPASTPCHPNTGLPTESLQGAAPECGPHPETERDGSSAPPSPGKSREAHHDSSETSTVTEQVSQSVSPRTTEPESQGISKVKPASKRSPSPREKALAPPDFRRTWAAPGDSSPDTRRAAVPMNTGATPATAIPHVSLVSQERSRGPSKTLETSGLSIPKSWKDGAPLEDTACMSEKTSPASPSLPVATDSTMSKSRESPVTDIDNFIREASEVRSQSSQKASCGAHPGIFEDQPPEGTRDGSSYHAQSVRSDQTSSPRKTGGTAPPPPPQWASQPSVLDSIHPDKHFAVNKNFLNNYSRNFSNFHEDNISLSGPGDSTEPSLSSMYGDAEDSSSDPESLAEAPQAAARNSWSPPHSHGSSHQEGTSESEDEHIEICSTSGCPETPVTAHPPAQAALCRVLPLQHSALSEPVADSCERACFLPGTSHISIPSSSQPFSFLDVSSQEHEPWVSINASQSQGPSCTEEIMATTGMSSVTADRQPSEMTSHGHNLPFALRNPNVVNGLECDLLAEGPPNEEAAAASVMHSVYVLGTEGPKNGEAVLANLHVAKSRNLDDLLQKPKSISRRPIMAWFKEINKTSQGTHSQSKSEKEQSSMLATSPGYKAQIVGTSHSKGVAVLKSPPPLHKSQENKDLPKKSPVETLSNCQKPKCGPKLRRLSGKSKAGPETPVASSVKATGTDHRKTLISPQASHKMFSKAVSQRLHIADQEEPANTLVDTPKPPQCMPEGKPPLAASGSPRTSASDTSIRPFALPLTSPKTVPQQSASSRFHMAVYSESGTSCPTTSRSPRCGAEGKVPPGDSGSSSPTAPRNSLALTGTRQSKHLTPSRVDLVVSEAAQPRGTSEKGSEKITSDLLERTTQLKTVDISPERMPKNAGGDKPPNGDRQGGFLTQSSCQEKNGTSLRQSGESVPKHLPSSPSQASQVEQEMCWSFRVAKPASSPKLPAKTLDSSQGRSSQMPASSGMPKNDVPPGPRGEEHPYFTPRPATRTYSMPAQFSSHFGREGPSPNSPSRSPQDPQVPVMSISVSEAKAAKGVTNGQGVYSVKPLLEMSRNLPPTDGGDTCAVPETSGIIADKVKATRRHYYYEHNWPHESTSFFSVKQRIKSFENLANSDRPAAKSTTSPFLSVNSKPLISRRSSGSITSGSLSHPSDVSARSLRRSLSSCSESQSEASSLLPQMTKSPSSVTLVVSKQNPPETGKSPSSDPKKSLVPVGIPSSTVTPASPTKRNKSSVRHSQPSPVSRSKLQELRALSMPDLDKLCGGEEYSAGPGSVLFKTQLEIIPRRSLGSPATSPAGSPARGHPGLDGSASLSCPMNGRTKVCPGENYPSASEPAVSPGAREGDEAVQALPSGRSWSVNLNQLLASAGDQQKLQTVLSLVGSKSTIFTLMQEAKAQSENKEDTCFIVLNKKEGSGLGFSVAGGADVEPKSVMVHRVFSQGVASQEGTMSRGDFLLSINGTSLAGLAHSEVAKVLHQAQLHKHALMIIKKGNDQPRPSLRQEPPSANGKGPLSRKTLPLEPGAGRNGAAHDALCVEVLKTSAGLGLSLDGGKSSVSGDGPLVIKRVYKGGAAEQAGTIEAGDEILAINGKPLVGLVHFDAWNIMKSVPEGPVQLVIRKHRNS", "length": 2483, "header": "tr|A0A9J7K3V3-1|A0A9J7JGM8_CRIGR Computationally mapped isoform of PDZ domain-containing protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Pdzd2 PE=4 SV=1 CANONICAL=A0A9J7JGM8-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K5A5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGM8/entry#A0A9J7K5A5-1", "sequence": { "sequence": 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"length": 2487, "header": "tr|A0A9J7K5A5-1|A0A9J7JGM8_CRIGR Computationally mapped isoform of PDZ domain-containing protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Pdzd2 PE=4 SV=1 CANONICAL=A0A9J7JGM8-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1003, "start_aa": "Thr", "end_pos": 1003, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1003", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1140, "start_aa": "Thr", "end_pos": 1140, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1140", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 2232, "start_aa": "Thr", "end_pos": 2232, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr2232", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 530, "start_aa": "Thr", "end_pos": 530, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr530", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FGT9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGT9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FGT9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FGT9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100774098", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100774098", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "extracellular region", "id": "GO:0005576", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005576", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JGM8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGM8" } ], "pmid": "" }, { "name": "nucleus", "id": "GO:0005634", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005634", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JGM8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGM8" } ], "pmid": "" }, { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JGM8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGM8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1309, "end_pos": 1311, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1313, "end_pos": 1315, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1321, "end_pos": 1323, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1466, "end_pos": 1468, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1589, "end_pos": 1591, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1911, "end_pos": 1913, "annotation": "n_glycosylation_sequon" }, { "start_pos": 19, "end_pos": 21, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2240, "end_pos": 2242, "annotation": "n_glycosylation_sequon" }, { "start_pos": 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"table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7JGX2-1", "uniprot_ac": "A0A9J7JGX2", "uniprot_id": "A0A9J7JGX2_CRIGR", "mass": { "chemical_mass": 274293.0, "monoisotopic_mass": 274293.0 }, "refseq": { "ac": "XP_027257434", "name": "transcription factor TFIIIB component B'' homolog isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257434" }, "gene_names": [ { "name": "Bdp1", "type": "recommended", "evidence": [ { "id": "A0A9J7JGX2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGX2" } ] }, { "name": "Bdp1", "type": "synonym", "evidence": [ { "id": "XP_027257434", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257434" } ] } ], "protein_names": [ { "name": "Transcription factor TFIIIB component B'' homolog isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7JGX2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGX2/entry#names_and_taxonomy" } ] }, { "name": "transcription factor TFIIIB component B'' homolog isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027257434", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257434" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027257434", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257434" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JGX2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGX2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Bdp1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGX2", "locus": {} } ], "crossref": [ { "id": "100759229", "url": "https://www.ncbi.nlm.nih.gov/gene/100759229", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001005", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001005", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009057", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009057", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039467", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039467", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100759229", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759229", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JGX2", "url": "https://www.orthodb.org/?gene=A0A9J7JGX2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22929", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22929", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22929:SF0", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22929:SF0", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15963", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15963", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027257434", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257434", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FH38", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FH38", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FH38-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FH38-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FHB9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHB9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FHB9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHB9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JGX2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGX2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JGX2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGX2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MFRRARLSVKPNVRPGGGARGSAAPNPQRGPEAPRPPEPATEPAPKPAEPTDVPAVDSGGAEPQEKAPGSSFNSDSKTGDENNVEESSKSSNTVSQRRKRLSSTSSLAKPTVSVPSQCHPISTVNHDAPQPNPTPAKEKQPCSDRYRIYKARKLREMLKEELRKEKKQWKNKFATNESQRPPDRSKMTMRDFIYYLPDNNPMTSSVEQEKKTEKSLAPTLTRDRQENQSTQDADDNEEVEEEADDGPLLVPRVKVAEDGSIILDEESLTVEVLRTKGPCVVEENDPIFERGSTTTYSSFRKNYYSKPWSNKETDMFFLAISMVGTDFSMIGQLFPHRARIEIKNKFKREEKTNGWRIDKAFQEKRPFDFDFFAHLLQKVLAEEEKRKQKSNKCQSSKEKTSKPRKNVKAKKVTNEEVNDDPDESVNSNVSDPERSQKSAQTVAEESPTSSGQELEQAMVEQDQNQEKRRRRRRRKNQDEADKQEATNPLGNVHVESTPPVAEIHKNTCPSEENEGECNKEQIPSFPQNIDDVTGLASNEKMEMRTDSVTFTCDQQDIMPLASESLESSGSDFPVSEVGGAASCELNNAGSTCMEERNTDLKNKPPETEQTETVKPKSRSRLQRPKPNLSRAVGKKSVVPQDKQDERNKNSPSETSSEKNHVEKERMNISENSGTENIERENLGAETVSDLSEKSYIPEDGQPKVLRPARLMRGRMQRPRPNIQKAAERKESPTPQKEIGAHVEKNEDESGVDREKNETCVVIPQQMENESLKNLQCEEDVISQPEKKGPFENVQSDEVKFLDECPSIQEGSKANKLKQAPVLRTRFQRPKPKPNTGRKRMASRGGVPEEIPVSREITATLEETTRPDTSPREKIPNVTIATPSTKELESDLKDTGRNDISSNMKVSEMTDVTMEMEIGLETFGRDISPGDMGGEMIDIPMETETGVNEISPMEKVPELIDTTEEICTNLEETGRGEIFPQENGPKEVSPISETETNLQETGKELPTKDRTPDMIDSNEKGDAHSEETERQEISAPVKEAEEARTMGEMETETMGEMERDWRETSQRENTVVAPSEQLVSEVDISSSTCREKVGVEWSAVEEKELDLKGTGERDFSVMAMDSGERTTSEEETNENLKQTGEISVSWERGCGEIIVGEEMVADLEKTEKVNVSPRDCEPEEHISRQLSADVIQSSSDDSIPGPSLDRKNISNKTSVMSAFVEEKENADKEVSSHLSHTEYSSQNSEQHEIDPGIQLPDVLEQFSDTSLSKSLPQEQKPLEVKPAPFLRSRFKKPKPNLSRAALKRATTEAEHCVPGKKSEADKMVTIMLQQDSKQADSPSSKHVPSLMAPRENDNSGPQEEAVILPCIQTEKNSSLSNSCEPKEDSQLTHNQEKENGLVVPIGTQKVNVVTQETKQNVQITLPVRGRLQRPRPNVQKARQRQVVEKGEAEGITKNEGSELPKDEAKTSLAMVNSHIESEVKVVSFGVSEYSVNESHSHVVPVENLNINKTSILDEQIRPENKPHVPSPAQLIRRRFQRVKPNLGGAHHKKEQPGIEKDTTDQRTAPEPEDRVLPKGDLDIQLSLNEKTEILTPLEVSERTDCVVPEESGSDRNDAQLKAAPAGGARDETVEDHPTSSLVLEEHGLSKQISYPQLLKESNYSKTAPHRRTPLSSASECEIDHSGKRAHRKMKPSVTKGRGSKRIRGKTAKKEPRAAKSVLVTLRASQKEDEDDAEDFDSDYEEETCHLAPEELNKAPVFVPVGLRSPEPVSAQIEETMEELEITMDVTDMGCVTVVEHQLSNMDATTQDVQPGKDLHSSSFEMVMSEQTQEEPGPSDGSTEAAITLLAMGDIVLQSEIITEQGDVGVCVFPDVHSKDKSHVPFSPDNVNHKIVHDYQEVSSPVISISPASLEENKIVSKEQSAREEADMMEEVMENTVSTRNIEPTEHLRMESHFILPEPNSEKILGICGIDGHQEVASVCVTKGTELEIQRETEENDSKAIELEDKSLEPTETEEQHQLPYVHDVEGATVSQEAILSARSEDQEANLQEVQMSAAAVASSEIGPHILDSGQGLGESPAEEPLKENSKGSSMLMLQVPEQIVPANIPEVQQENMIGSQDVTVNLFTNLQQDGEDEQAFILTLVEIPTNATEGFTDASMQLMPSALLPAPILVKSGNTVERGDLSGSSQATSVVEDAICLSSGNSDSEKLPAKLDTISRKRFHCSPDENIPLPPAKKSAVTPAIDCQECASEVCSKEFNVFEKTESCVGQGIFPTSESTHTTPQPQKEHNEPTFQNAGTRSPNEIKDACVEKTMTQLPQDEMVSDKEEKTGPVSSSEQRDSMTSSSKPPLTRPGRRPLGFLSLICPKNSLDSDEVTQTHSKKRLKPHIPVSRRNLKKSNVVTANQKKNESSDPLPSPSVTDTQSDNPGTSASQVSSDQPLLKEKCKNGPKRASEEEATTVSEFVFNDIFIEVDETE", "length": 2472, "header": "tr|A0A9J7JGX2-1|A0A9J7JGX2_CRIGR Isoform 1 of Transcription factor TFIIIB component B'' homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=Bdp1 PE=4 SV=1 CANONICAL=A0A9J7JGX2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FH38-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGX2/entry#A0A9J7FH38-1", "sequence": { "sequence": "MFRRARLSVKPNVRPGGGARGSAAPNPQRGPEAPRPPEPATEPAPKPAEPTDVPAVDSGGAEPQEKAPGSSFNSDSKTGDENNVEESSKSSNTVSQRRKRLSSTSSLAKPTVSVPSQCHPISTVNHDAPQPNPTPAKEKQPCSDRYRIYKARKLREMLKEELRKEKKQWKNKFATNESQRPPDRSKMTMRDFIYYLPDNNPMTSSVEQEKKTEKSLAPTLTRDRQENQSTQDADDNEEVEEEADDGPLLVPRVKVAEDGSIILDEESLTVEVLRTKGPCVVEENDPIFERGSTTTYSSFRKNYYSKPWSNKETDMFFLAISMVGTDFSMIGQLFPHRARIEIKNKFKREEKTNGWRIDKAFQEKRPFDFDFFAHLLQKVLAEEEKRKQKSNKCQSSKEKTSKPRKNVKAKKVTNEEVNDDPDESVNSNVSDPERSQKSAQTVAEESPTSSGQELEQAMVEQDQNQEKRRRRRRRKNQDEADKQEATNPLGNVHVESTPPVAEIHKNTCPSEENEGECNKEQIPSFPQNIDDVTGDQQDIMPLASESLESSGSDFPVSEVGGAASCELNNAGSTCMEERNTDLKNKPPETEQTETVKPKSRSRLQRPKPNLSRAVGKKSVVPQDKQDERNKNSPSETSSEKNHVEKERMNISENSGTENIERENLGAETVSDLSEKSYIPEDGQPKVLRPARLMRGRMQRPRPNIQKAAERKESPTPQKEIGAHVEKNEDESGVDREKNETCVVIPQQMENESLKNLQCEEDVISQPEKKGPFENVQSDEVKFLDECPSIQEGSKANKLKQAPVLRTRFQRPKPKPNTGRKRMASRGGVPEEIPVSREITATLEETTRPDTSPREKIPNVTIATPSTKELESDLKDTGRNDISSNMKVSEMTDVTMEMEIGLETFGRDISPGDMGGEMIDIPMETETGVNEISPMEKVPELIDTTEEICTNLEETGRGEIFPQENGPKEVSPISETETNLQETGKELPTKDRTPDMIDSNEKGDAHSEETERQEISAPVKEAEEARTMGEMETETMGEMERDWRETSQRENTVVAPSEQLVSEVDISSSTCREKVGVEWSAVEEKELDLKGTGERDFSVMAMDSGERTTSEEETNENLKQTGEISVSWERGCGEIIVGEEMVADLEKTEKVNVSPRDCEPEEHISRQLSADVIQSSSDDSIPGPSLDRKNISNKTSVMSAFVEEKENADKEVSSHLSHTEYSSQNSEQHEIDPGIQLPDVLEQFSDTSLSKSLPQEQKPLEVKPAPFLRSRFKKPKPNLSRAALKRATTEAEHCVPGKKSEADKMVTIMLQQDSKQADSPSSKHVPSLMAPRENDNSGPQEEAVILPCIQTEKNSSLSNSCEPKEDSQLTHNQEKENGLVVPIGTQKVNVVTQETKQNVQITLPVRGRLQRPRPNVQKARQRQVVEKGEAEGITKNEGSELPKDEAKTSLAMVNSHIESEVKVVSFGVSEYSVNESHSHVVPVENLNINKTSILDEQIRPENKPHVPSPAQLIRRRFQRVKPNLGGAHHKKEQPGIEKDTTDQRTAPEPEDRVLPKGDLDIQLSLNEKTEILTPLEVSERTDCVVPEESGSDRNDAQLKAAPAGGARDETVEDHPTSSLVLEEHGLSKQISYPQLLKESNYSKTAPHRRTPLSSASECEIDHSGKRAHRKMKPSVTKGRGSKRIRGKTAKKEPRAAKSVLVTLRASQKEDEDDAEDFDSDYEEETCHLAPEELNKAPVFVPVGLRSPEPVSAQIEETMEELEITMDVTDMGCVTVVEHQLSNMDATTQDVQPGKDLHSSSFEMVMSEQTQEEPGPSDGSTEAAITLLAMGDIVLQSEIITEQGDVGVCVFPDVHSKDKSHVPFSPDNVNHKIVHDYQEVSSPVISISPASLEENKIVSKEQSAREEADMMEEVMENTVSTRNIEPTEHLRMESHFILPEPNSEKILGICGIDGHQEVASVCVTKGTELEIQRETEENDSKAIELEDKSLEPTETEEQHQLPYVHDVEGATVSQEAILSARSEDQEANLQEVQMSAAAVASSEIGPHILDSGQGLGESPAEEPLKENSKGSSMLMLQVPEQIVPANIPEVQQENMIGSQDVTVNLFTNLQQDGEDEQAFILTLVEIPTNATEGFTDASMQLMPSALLPAPILVKSGNTVERGDLSGSSQATSVVEDAICLSSGNSDSEKLPAKLDTISRKRFHCSPDENIPLPPAKKSAVTPAIDCQECASEVCSKEFNVFEKTESCVGQGIFPTSESTHTTPQPQKEHNEPTFQNAGTRSPNEIKDACVEKTMTQLPQDEMVSDKEEKTGPVSSSEQRDSMTSSSKPPLTRPGRRPLGFLSLICPKNSLDSDEVTQTHSKKRLKPHIPVSRRNLKKSNVVTANQKKNESSDPLPSPSVTDTQSDNPGTSASQVSSDQPLLKEKCKNGPKRASEEEATTVSEFVFNDIFIEVDETE", "length": 2454, "header": "tr|A0A9J7FH38-1|A0A9J7JGX2_CRIGR Computationally mapped isoform of Transcription factor TFIIIB component B'' homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=Bdp1 PE=4 SV=1 CANONICAL=A0A9J7JGX2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FHB9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGX2/entry#A0A9J7FHB9-1", "sequence": { "sequence": "MFRRARLSVKPNVRPGGGARGSAAPNPQRGPEAPRPPEPATEPAPKPAEPTDVPAVDSGGAEPQEKAPGSSFNSDSKTGDENNVEESSKSSNTVSQRRKRLSSTSSLAKPTVSVPSQCHPISTVNHDAPQPNPTPAKEKQPCSDRYRIYKARKLREMLKEELRKEKKQWKNKFATNESQRPPDRSKMTMRDFIYYLPDNNPMTSSVEQEKKTEKSLAPTLTRDRQENQSTQDADDNEEVEEEADDGPLLVPRVKVAEDGSIILDEESLTVEVLRTKGPCVVEENDPIFERGSTTTYSSFRKNYYSKPWSNKETDMFFLAISMVGTDFSMIGQLFPHRARIEIKNKFKREEKTNGWRIDKAFQEKRPFDFDFFAHLLQKVLAEEEKRKQKSNKCQSSKEKTSKPRKNVKAKKVTNEEVNDDPDESVNSNVSDPERSQKSAQTVAEESPTSSGQELEQAMVEQDQNQEKRRRRRRRKNQDEADKQEATNPLGNVHVESTPPVAEIHKNTCPSEENEGECNKEQIPSFPQNIDDVTGLASNEKMEMRTDSVTFTCDQQDIMPLASESLESSGSDFPVSEVGGAASCELNNAGSTCMEERNTDLKNKPPETEQTETVKPKSRSRLQRPKPNLSRAVGKKSVVPQDKQDERNKNSPSETSSEKNHVEKERMNISENSGTENIERENLGAETVSDLSEKSYIPEDGQPKVLRPARLMRGRMQRPRPNIQKAAERKESPTPQKEIGAHVEKNEDESGVDREKNETCVVIPQQMENESLKNLQCEEDVISQPEKKGPFENVQSDEVKFLDECPSIQEGSKANKLKQAPVLRTRFQRPKPKPNTGRKRMASRGGVPEEIPVSREITATLEETTRPDTSPREKIPNVTIATPSTKELESDLKDTGRNDISSNMKVSEMTDVTMEMEIGLETFGRDISPGDMGGEMIDIPMETETGVNEISPMEKVPELIDTTEEICTNLEETGRGEIFPQENGPKEVSPISETETNLQETGKELPTKDRTPDMIDSNEKGDAHSEETERQEISAPVKEAEEARTMGEMETETMGEMERDWRETSQRENTVVAPSEQLVSEVDISSSTCREKVGVEWSAVEEKELDLKGTGERDFSVMAMDSGERTTSEEETNENLKQTGEISVSWERGCGEIIVGEEMVADLEKTEKVNVSPRDCEPEEHISRQLSADVIQSSSDDSIPGPSLDRKNISNKTSVMSAFVEEKENADKEVSSHLSHTEYSSQNSEQHEIDPGIQLPDVLEQFSDTSLSKSLPQEQKPLEVKPAPFLRSRFKKPKPNLSRAALKRATTEAEHCVPGKKSEADKMVTIMLQQDSKQADSPSSKHVPSLMAPRENDNSGPQEEAVILPCIQTEKNSSLSNSCEPKEDSQLTHNQEKENGLVVPIGTQKVNVVTQETKQNVQITLPVRGRLQRPRPNVQKARQRQVVEKGEAEGITKNEGSELPKDEAKTSLAMVNSHIESEVKVVSFGVSEYSVNESHSHVVPVENLNINKTSILDEQIRPENKPHVPSPAQLIRRRFQRVKPNLGGAHHKKEQPGIEKDTTDQRTAPEPEDRVLPKGDLDIQLSLNEKTEILTPLEVSERTDCVVPEESGSDRNDAQLKAAPAGGARDETVEDHPTSSLVLEEHGLSKQISYPQLLKESNYSKTAPHRRTPLSSASECEIDHSGKRAHRKMKPSVTKGRGSKRIRGKTAKKEPRAAKSVLVTLRASQKEDEDDAEDFDSDYEEETCHLAPEELNKAPVFVPVGLRSPEPVSAQIEETMEELEITMDVTDMGCVTVVEHQLSNMDATTQDVQPGKDLHSSSFEMVMSEQTQEEPGPSDGSTEAAITLLAMGDIVLQSEIITEQGDVGVCVFPDVHSKDKSHVPFSPDNVNHKIVHDYQEVSSPVISISPASLEENKIVSKEQSAREEADMMEEVMENTVSTRNIEPTEHLRMESHFILPEPNSEKILGICGIDGHQEVASVCVTKGTELEIQRETEENDSKAIELEDKSLEPTETEEQHQLPYVHDVEGATVSQEAILSARSEDQEANLQEVQMSAAAVASSEIGPHILDSGQGLGESPAEEPLKENSKGSSMLMLQVPEIVPANIPEVQQENMIGSQDVTVNLFTNLQQDGEDEQAFILTLVEIPTNATEGFTDASMQLMPSALLPAPILVKSGNTVERGDLSGSSQATSVVEDAICLSSGNSDSEKLPAKLDTISRKRFHCSPDENIPLPPAKKSAVTPAIDCQECASEVCSKEFNVFEKTESCVGQGIFPTSESTHTTPQPQKEHNEPTFQNAGTRSPNEIKDACVEKTMTQLPQDEMVSDKEEKTGPVSSSEQRDSMTSSSKPPLTRPGRRPLGFLSLICPKNSLDSDEVTQTHSKKRLKPHIPVSRRNLKKSNVVTANQKKNESSDPLPSPSVTDTQSDNPGTSASQVSSDQPLLKEKCKNGPKRASEEEATTVSEFVFNDIFIEVDETE", "length": 2471, "header": "tr|A0A9J7FHB9-1|A0A9J7JGX2_CRIGR Computationally mapped isoform of Transcription factor TFIIIB component B'' homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=Bdp1 PE=4 SV=1 CANONICAL=A0A9J7JGX2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JGX2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGX2/entry#A0A9J7JGX2-1", "sequence": { "sequence": "MFRRARLSVKPNVRPGGGARGSAAPNPQRGPEAPRPPEPATEPAPKPAEPTDVPAVDSGGAEPQEKAPGSSFNSDSKTGDENNVEESSKSSNTVSQRRKRLSSTSSLAKPTVSVPSQCHPISTVNHDAPQPNPTPAKEKQPCSDRYRIYKARKLREMLKEELRKEKKQWKNKFATNESQRPPDRSKMTMRDFIYYLPDNNPMTSSVEQEKKTEKSLAPTLTRDRQENQSTQDADDNEEVEEEADDGPLLVPRVKVAEDGSIILDEESLTVEVLRTKGPCVVEENDPIFERGSTTTYSSFRKNYYSKPWSNKETDMFFLAISMVGTDFSMIGQLFPHRARIEIKNKFKREEKTNGWRIDKAFQEKRPFDFDFFAHLLQKVLAEEEKRKQKSNKCQSSKEKTSKPRKNVKAKKVTNEEVNDDPDESVNSNVSDPERSQKSAQTVAEESPTSSGQELEQAMVEQDQNQEKRRRRRRRKNQDEADKQEATNPLGNVHVESTPPVAEIHKNTCPSEENEGECNKEQIPSFPQNIDDVTGLASNEKMEMRTDSVTFTCDQQDIMPLASESLESSGSDFPVSEVGGAASCELNNAGSTCMEERNTDLKNKPPETEQTETVKPKSRSRLQRPKPNLSRAVGKKSVVPQDKQDERNKNSPSETSSEKNHVEKERMNISENSGTENIERENLGAETVSDLSEKSYIPEDGQPKVLRPARLMRGRMQRPRPNIQKAAERKESPTPQKEIGAHVEKNEDESGVDREKNETCVVIPQQMENESLKNLQCEEDVISQPEKKGPFENVQSDEVKFLDECPSIQEGSKANKLKQAPVLRTRFQRPKPKPNTGRKRMASRGGVPEEIPVSREITATLEETTRPDTSPREKIPNVTIATPSTKELESDLKDTGRNDISSNMKVSEMTDVTMEMEIGLETFGRDISPGDMGGEMIDIPMETETGVNEISPMEKVPELIDTTEEICTNLEETGRGEIFPQENGPKEVSPISETETNLQETGKELPTKDRTPDMIDSNEKGDAHSEETERQEISAPVKEAEEARTMGEMETETMGEMERDWRETSQRENTVVAPSEQLVSEVDISSSTCREKVGVEWSAVEEKELDLKGTGERDFSVMAMDSGERTTSEEETNENLKQTGEISVSWERGCGEIIVGEEMVADLEKTEKVNVSPRDCEPEEHISRQLSADVIQSSSDDSIPGPSLDRKNISNKTSVMSAFVEEKENADKEVSSHLSHTEYSSQNSEQHEIDPGIQLPDVLEQFSDTSLSKSLPQEQKPLEVKPAPFLRSRFKKPKPNLSRAALKRATTEAEHCVPGKKSEADKMVTIMLQQDSKQADSPSSKHVPSLMAPRENDNSGPQEEAVILPCIQTEKNSSLSNSCEPKEDSQLTHNQEKENGLVVPIGTQKVNVVTQETKQNVQITLPVRGRLQRPRPNVQKARQRQVVEKGEAEGITKNEGSELPKDEAKTSLAMVNSHIESEVKVVSFGVSEYSVNESHSHVVPVENLNINKTSILDEQIRPENKPHVPSPAQLIRRRFQRVKPNLGGAHHKKEQPGIEKDTTDQRTAPEPEDRVLPKGDLDIQLSLNEKTEILTPLEVSERTDCVVPEESGSDRNDAQLKAAPAGGARDETVEDHPTSSLVLEEHGLSKQISYPQLLKESNYSKTAPHRRTPLSSASECEIDHSGKRAHRKMKPSVTKGRGSKRIRGKTAKKEPRAAKSVLVTLRASQKEDEDDAEDFDSDYEEETCHLAPEELNKAPVFVPVGLRSPEPVSAQIEETMEELEITMDVTDMGCVTVVEHQLSNMDATTQDVQPGKDLHSSSFEMVMSEQTQEEPGPSDGSTEAAITLLAMGDIVLQSEIITEQGDVGVCVFPDVHSKDKSHVPFSPDNVNHKIVHDYQEVSSPVISISPASLEENKIVSKEQSAREEADMMEEVMENTVSTRNIEPTEHLRMESHFILPEPNSEKILGICGIDGHQEVASVCVTKGTELEIQRETEENDSKAIELEDKSLEPTETEEQHQLPYVHDVEGATVSQEAILSARSEDQEANLQEVQMSAAAVASSEIGPHILDSGQGLGESPAEEPLKENSKGSSMLMLQVPEQIVPANIPEVQQENMIGSQDVTVNLFTNLQQDGEDEQAFILTLVEIPTNATEGFTDASMQLMPSALLPAPILVKSGNTVERGDLSGSSQATSVVEDAICLSSGNSDSEKLPAKLDTISRKRFHCSPDENIPLPPAKKSAVTPAIDCQECASEVCSKEFNVFEKTESCVGQGIFPTSESTHTTPQPQKEHNEPTFQNAGTRSPNEIKDACVEKTMTQLPQDEMVSDKEEKTGPVSSSEQRDSMTSSSKPPLTRPGRRPLGFLSLICPKNSLDSDEVTQTHSKKRLKPHIPVSRRNLKKSNVVTANQKKNESSDPLPSPSVTDTQSDNPGTSASQVSSDQPLLKEKCKNGPKRASEEEATTVSEFVFNDIFIEVDETE", "length": 2472, "header": "tr|A0A9J7JGX2-1|A0A9J7JGX2_CRIGR Isoform 1 of Transcription factor TFIIIB component B'' homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=Bdp1 PE=4 SV=1 CANONICAL=A0A9J7JGX2-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 134, "start_aa": "Thr", "end_pos": 134, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr134", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 2237, "start_aa": "Thr", "end_pos": 2237, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr2237", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 733, "start_aa": "Thr", "end_pos": 733, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr733", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"length": 1703, "header": "tr|A0A9J7FHN2-1|A0A9J7JHX3_CRIGR Computationally mapped isoform of Signal-induced proliferation-associated 1-like protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Sipa1l2 PE=4 SV=1 CANONICAL=A0A9J7JHX3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FI93-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JHX3/entry#A0A9J7FI93-1", "sequence": { "sequence": "MSDPRPSQVEKHKLGRAASKFKDPSRTMQSDDYFARKFKAINGSMGPATLNTSSPSEGSGGGGGPANGTPAVPKMGVRARVSEWPPKKDCSKDLACKMLWESRSQSSYESVTSIIQNGQNDQGDRQQEEQLDLDFVEAKYTIGDIFVHSPQRGLHPIRQRSNSDVTISDIDTEDVLDQHAVNPNTGAALHREYGSTSSIDRQGLSGENVFAMLRGYRVENYDPKVTSSFGFPDFFPCNTAISPSLHAAAQISRGEFVRISGLDYMDGGLLMGRDRDKPFKRRLKSESVETSLFRKLRTVKSEHETFKFTSDLEEGRLDRGIRPWSCQRCFAHYDVQSILFNINEAMATRASVGKRKNITTGASAASQTPVPVGPAGGCESPLGSKEDLNSKENPDADEGDGKSNDLVLSCPYFRNETGGEGDRRIALSRANSASFSSGESCSFESSLSSHCTNAGVSVLEVPRENQPIHREKVKRYIIEHVDLGAYYYRKFFYGKEHQNYFGIDENLGPVAVSIRREKVEDPKEKEGSQFNYRVAFRTSELTTLRGAILEDAVPSTARHGTARGLPLKEVLEYVIPELSIQCLRQAASSPKVPEQLLKLDEQGLSFQHKIGILYCKAGQSTEEEMYNNETAGPAFEEFLDLLGQRVRLKGFSKYRAQLDNKTDSTGTHSLYTTYKDFELMFHVSTLLPYMPNNRQQLLRKRHIGNDIVTIVFQEPGALPFTPKNIRSHFQHVFVIVKVHNPCTENVCYSVGVSRSKDVPPFGPPIPKGVTFPKSAVFRDFLLAKVINAENAAHKSEKFRAMATRTRQEYLKDLAENFVTTATVDTSAKFSFITLGAKKKERVKPRKDAHLFSIGAIMWHVVARDFGQSADIECLLGISNEFIMLIEKDSKNVVFNCSCRDVIGWTSGLVSIKVFYERGECILLSSVDNCSEDIREIVQRLVIVTRGCETVEMTLRRNGLGQLGFHVNFEGIVADVEPFGFAWKAGLRQGSRLVEICKVAVATLTHEQMIDLLRTSVTVKVVIIHPHEDGSPRRGCSELCRIPMVEYKLDSEGTPCEYKTPFRRNTTWHRVPTPALQPVSRASPVPGTPDRLQCQPLLQQTQAAIPRSTSFDRKLPDGTRSSPSNQSSSSDPGPGGSGPWRPQVGYDGCPSPLLLEHQGPGSVECDGTREHEDIVEGSRLPETKWHGPPSKVLSSYKERALQKDGSCKDSPNKLSHIGDKSCSSHSSSNTLSSNTSSNSDDKHFGSGDLMDPELLGLTYIKGASTDSGIDTTPCMPATILGPVHLTGSRSLIHSRAEQWADAADASGADEPAEMYALHGYASAISTSAAEGSMGDLSEISSHSSGSHHSGSPSAHCSKSTGSLDSSKVYIVSHSSSQQVPGAMSKPYHRQEAANKYVIGWKKSEDSPPPEEPEVTECPRIYGEMDLMSTATQHPAVVGDAVSETQHVLSKDDFLKLMLPDSPLVEEGRRKFSFYGNLSPRRSLYRTLSDESVCSNRRGSSFASSRSSILDQALPNDILFSTTPPYHSTLPPRTHPAPNMGSLRNEFWFSDGSLSDKSKCADPGLMPLPDTATGLDWSHLVDAARAFEGLDSDEELGLLCHHASYLDQRVASFCTLTDLQHGQDLEGAPELSLCVDPTGGKQFMDAPGERSPSTLTGKVNQLELILRQLQTDLRKEKQDKAVLQAEVQHLRQDNMRLQEESQTATAQLRKFTEWFFSTIDKKA", "length": 1721, "header": "tr|A0A9J7FI93-1|A0A9J7JHX3_CRIGR Computationally mapped isoform of Signal-induced proliferation-associated 1-like protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Sipa1l2 PE=4 SV=1 CANONICAL=A0A9J7JHX3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FLH6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JHX3/entry#A0A9J7FLH6-1", "sequence": { "sequence": "MSDPRPSQVEKHKLGRAASKFKDPSRTMQSDDYFARKFKAINGSMGPATLNTSSPSEGSGGGGGPANGTPAVPKMGVRARVSEWPPKKDCSKDLACKMLWESRSQSSYESVTSIIQNGQNDQGDRQQEEQLDLDFVEAKYTIGDIFVHSPQRGLHPIRQRSNSDVTISDIDTEDVLDQHAVNPNTGAALHREYGSTSSIDRQGLSGENVFAMLRGYRVENYDPKVTSSFGFPDFFPCNTAISPSLHAAAQISRGEFVRISGLDYMDGGLLMGRDRDKPFKRRLKSESVETSLFRKLRTVKSEHETFKFTSDLEEGRLDRGIRPWSCQRCFAHYDVQSILFNINEAMATRASVGKRKNITTGASAASQTPVPVGPAGGCESPLGSKEDLNSKENPDADEGDGKSNDLVLSCPYFRNETGGEGDRRIALSRANSASFSSGESCSFESSLSSHCTNAGVSVLEVPRENQPIHREKVKRYIIEHVDLGAYYYRKFFYGKEHQNYFGIDENLGPVAVSIRREKVEDPKEKEGSQFNYRVAFRTSELTTLRGAILEDAVPSTARHGTARGLPLKEVLEYVIPELSIQCLRQAASSPKVPEQLLKLDEQGLSFQHKIGILYCKAGQSTEEEMYNNETAGPAFEEFLDLLGQRVRLKGFSKYRAQLDNKTDSTGTHSLYTTYKDFELMFHVSTLLPYMPNNRQQLLRKRHIGNDIVTIVFQEPGALPFTPKNIRSHFQHVFVIVKVHNPCTENVCYSVGVSRSKDVPPFGPPIPKGVTFPKSAVFRDFLLAKVINAENAAHKSEKFRAMATRTRQEYLKDLAENFVTTATVDTSAKFSFITLGAKKKERVKPRKDAHLFSIGAIMWHVVARDFGQSADIECLLGISNEFIMLIEKDSKNVVFNCSCRDVIGWTSGLVSIKVFYERGECILLSSVDNCSEDIREIVQRLVIVTRGCETVEMTLRRNGLGQLGFHVNFEGIVADVEPFGFAWKAGLRQGSRLVEICKVAVATLTHEQMIDLLRTSVTVKVVIIHPHEDGSPRRGCSELCRIPMVEYKLDSEGTPCEYKTPFRRNTTWHRVPTPALQPVSRASPVPGTPDRLQCQPLLQQTQAAIPRSTSFDRKLPDGTRSSPSNQSSSSDPGPGGSGPWRPQVGYDGCPSPLLLEHQGPGSVECDGTREHEDIVEGSRLPETKWHGPPSKVLSSYKERALQKDGSCKDSPNKLSHIGDKSCSSHSSSNTLSSNTSSNSDDKHFGSGDLMDPELLGLTYIKGASTDSGIDTTPCMPATILGPVHLTGSRSLIHSRAEQWADAADASGADEPAEMYALHGYASAISTSAAEGSMGDLSEISSHSSGSHHSGSPSAHCSKSTGSLDSSKVYIVSHSSSQQVPGAMSKPYHRQEAANKYVIGWKKSEDSPPPEEPEVTECPRIYGEMDLMSTATQHPAVVGDAVSETQHVLSKDDFLKLMLPDSPLVEEGRRKFSFYGNLSPRRSLYRTLSDESVCSNRRGSSFASSRSSILDQALPNDILFSTTPPYHSTLPPRTHPAPNMGSLRNEFWFSDGSLSDKSKCADPGLMPLPDTATGLDWSHLVDAARAFEGHCDQRVASFCTLTDLQHGQDLEGAPELSLCVDPTGGKQFMDAPGERSPSTLTGKVNQLELILRQLQTDLRKEKQDKAVLQAEVQHLRQDNMRLQEESQTATAQLRKFTEWFFSTIDKKA", "length": 1706, "header": "tr|A0A9J7FLH6-1|A0A9J7JHX3_CRIGR Computationally mapped isoform of Signal-induced proliferation-associated 1-like protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Sipa1l2 PE=4 SV=1 CANONICAL=A0A9J7JHX3-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JHX3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JHX3/entry#A0A9J7JHX3-1", "sequence": { "sequence": "MSDPRPSQVEKHKLGRAASKFKDPSRTMQSDDYFARKFKAINGSMGPATLNTSSPSEGSGGGGGPANGTPAVPKMGVRARVSEWPPKKDCSKDLACKMLWESRSQSSYESVTSIIQNGQNDQGDRQQEEQLDLDFVEAKYTIGDIFVHSPQRGLHPIRQRSNSDVTISDIDTEDVLDQHAVNPNTGAALHREYGSTSSIDRQGLSGENVFAMLRGYRVENYDPKVTSSFGFPDFFPCNTAISPSLHAAAQISRGEFVRISGLDYMDGGLLMGRDRDKPFKRRLKSESVETSLFRKLRTVKSEHETFKFTSDLEEGRLDRGIRPWSCQRCFAHYDVQSILFNINEAMATRASVGKRKNITTGASAASQTPVPVGPAGGCESPLGSKEDLNSKENPDADEGDGKSNDLVLSCPYFRNETGGEGDRRIALSRANSASFSSGESCSFESSLSSHCTNAGVSVLEVPRENQPIHREKVKRYIIEHVDLGAYYYRKFFYGKEHQNYFGIDENLGPVAVSIRREKVEDPKEKEGSQFNYRVAFRTSELTTLRGAILEDAVPSTARHGTARGLPLKEVLEYVIPELSIQCLRQAASSPKVPEQLLKLDEQGLSFQHKIGILYCKAGQSTEEEMYNNETAGPAFEEFLDLLGQRVRLKGFSKYRAQLDNKTDSTGTHSLYTTYKDFELMFHVSTLLPYMPNNRQQLLRKRHIGNDIVTIVFQEPGALPFTPKNIRSHFQHVFVIVKVHNPCTENVCYSVGVSRSKDVPPFGPPIPKGVTFPKSAVFRDFLLAKVINAENAAHKSEKFRAMATRTRQEYLKDLAENFVTTATVDTSAKFSFITLGAKKKERVKPRKDAHLFSIGAIMWHVVARDFGQSADIECLLGISNEFIMLIEKDSKNVVFNCSCRDVIGWTSGLVSIKVFYERGECILLSSVDNCSEDIREIVQRLVIVTRGCETVEMTLRRNGLGQLGFHVNFEGIVADVEPFGFAWKAGLRQGSRLVEICKVAVATLTHEQMIDLLRTSVTVKVVIIHPHEDGSPRRGCSELCRIPMVEYKLDSEGTPCEYKTPFRRNTTWHRVPTPALQPVSRASPVPGTPDRLQCQPLLQQTQAAIPRSTSFDRKLPDGTRSSPSNQSSSSDPGPGGSGPWRPQVGYDGCPSPLLLEHQGPGSVECDGTREHEDIVEGSRLPETKWHGPPSKVLSSYKERALQKDGSCKDSPNKLSHIGDKSCSSHSSSNTLSSNTSSNSDDKHFGSGDLMDPELLGLTYIKGASTDSGIDTTPCMPATILGPVHLTGSRSLIHSRAEQWADAADASGADEPAEMYALHGYASAISTSAAEGSMGDLSEISSHSSGSHHSGSPSAHCSKSTGSLDSSKVYIVSHSSSQQVPGAMSKPYHRQEAANKYVIGWKKSEDSPPPEEPEVTECPRIYGEMDLMSTATQHPAVVGDAVSETQHVLSKDDFLKLMLPDSPLVEEGRRKFSFYGNLSPRRSLYRTLSDESVCSNRRGSSFASSRSSILDQALPNDILFSTTPPYHSTLPPRTHPAPNMGSLRNEFWFSDGSLSDKSKCADPGLMPLPDTATGLDWSHLVDAARAFEGLDSDEELGLLCHHASYLGHCDQRVASFCTLTDLQHGQDLEGAPELSLCVDPTGGKQFMDAPGERSPSTLTGKVNQLELILRQLQTDLRKEKQDKAVLQAEVQHLRQDNMRLQEESQTATAQLRKFTEWFFSTIDKKA", "length": 1724, "header": "tr|A0A9J7JHX3-1|A0A9J7JHX3_CRIGR Isoform 1 of Signal-induced proliferation-associated 1-like protein 2 isoform X1 OS=Cricetulus griseus OX=10029 GN=Sipa1l2 PE=4 SV=1 CANONICAL=A0A9J7JHX3-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 1639, "start_aa": "Thr", "end_pos": 1639, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr1639", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 69, "start_aa": "Thr", "end_pos": 69, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr69", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FHN2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHN2" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FHN2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FHN2" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100763357", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763357", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "GTPase activator activity", "id": "GO:0005096", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005096", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JHX3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JHX3" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "cytoplasm", "id": "GO:0005737", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005737", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JHX3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JHX3" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "regulation of small GTPase mediated signal transduction", "id": "GO:0051056", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051056", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JHX3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JHX3" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1064, "end_pos": 1066, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1124, "end_pos": 1126, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1233, "end_pos": 1235, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1475, "end_pos": 1477, "annotation": "n_glycosylation_sequon" }, { "start_pos": 357, "end_pos": 359, "annotation": "n_glycosylation_sequon" }, { "start_pos": 415, "end_pos": 417, "annotation": "n_glycosylation_sequon" }, { "start_pos": 42, "end_pos": 44, "annotation": "n_glycosylation_sequon" }, { "start_pos": 51, "end_pos": 53, "annotation": "n_glycosylation_sequon" }, { "start_pos": 628, "end_pos": 630, "annotation": "n_glycosylation_sequon" }, { "start_pos": 660, "end_pos": 662, "annotation": "n_glycosylation_sequon" }, { "start_pos": 67, "end_pos": 69, "annotation": "n_glycosylation_sequon" }, { "start_pos": 895, "end_pos": 897, "annotation": "n_glycosylation_sequon" }, { "start_pos": 928, "end_pos": 930, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JHX3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JHX3" }, { "id": "PS50106", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50106" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PDZ", "eco_id": "ECO_0000259", "start_pos": 951, "end_pos": 1027, "start_aa": "Glu", "end_aa": "Glu", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7JHX3", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JHX3" }, { "id": "PS50085", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50085" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "Rap-GAP", "eco_id": "ECO_0000259", "start_pos": 596, "end_pos": 813, "start_aa": "Leu", "end_aa": "Leu", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 69, 1639 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1064, "end_pos": 1066 }, { "start_pos": 1124, "end_pos": 1126 }, { "start_pos": 1233, "end_pos": 1235 }, { "start_pos": 1475, "end_pos": 1477 }, { "start_pos": 357, "end_pos": 359 }, { "start_pos": 415, "end_pos": 417 }, { "start_pos": 42, "end_pos": 44 }, { "start_pos": 51, "end_pos": 53 }, { "start_pos": 628, "end_pos": 630 }, { "start_pos": 660, "end_pos": 662 }, { "start_pos": 67, "end_pos": 69 }, { "start_pos": 895, "end_pos": 897 }, { "start_pos": 928, "end_pos": 930 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7JF83-1", "uniprot_ac": "A0A9J7JF83", "uniprot_id": "A0A9J7JF83_CRIGR", "mass": { "chemical_mass": 127906.0, "monoisotopic_mass": 127906.0 }, "refseq": { "ac": "XP_027260254", "name": "phosphatidylinositide phosphatase SAC2 isoform X4", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260254" }, "gene_names": [ { "name": "Inpp5f", "type": "recommended", "evidence": [ { "id": "A0A9J7JF83", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JF83" } ] }, { "name": "Inpp5f", "type": "synonym", "evidence": [ { "id": "XP_027260254", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260254" } ] } ], "protein_names": [ { "name": "Phosphatidylinositide phosphatase SAC2 isoform X4", "type": "synonym", "evidence": [ { "id": "A0A9J7JF83", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JF83/entry#names_and_taxonomy" } ] }, { "name": "phosphatidylinositide phosphatase SAC2 isoform X4", "type": "synonym", "evidence": [ { "id": "XP_027260254", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260254" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027260254", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260254" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JF83", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JF83" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Inpp5f", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JF83", "locus": {} } ], "crossref": [ { "id": "A0A9J7JF83", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JF83", "database": "AlphaFoldDB", "categories": [] }, { "id": "100753756", "url": "https://www.ncbi.nlm.nih.gov/gene/100753756", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002013", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002013", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR022158", "url": "https://www.ebi.ac.uk/interpro/entry/IPR022158", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR034753", "url": "https://www.ebi.ac.uk/interpro/entry/IPR034753", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100753756", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100753756", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JF83", "url": "https://www.orthodb.org/?gene=A0A9J7JF83", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7K573", "url": "https://www.orthodb.org/?gene=A0A9J7K573", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR45662", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45662", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR45662:SF8", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR45662:SF8", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF02383", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02383", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12456", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12456", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027260254", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260254", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "55652", "url": "https://www.rhea-db.org/rhea/55652", "database": "Rhea", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7FIF0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIF0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FIF0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIF0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JBE5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBE5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JBE5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JBE5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JF83", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JF83", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JF83-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JF83-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K573", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K573", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K573-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K573-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MELFQAKDHYILQQGERALWCSRRDGGLQLRPATDLLLAWNPICLGLVEGVIGKIQLHSDLPWWLILIRQKALVGKLPGDHEVCKVTKIAVLSLSELEPQELELELCKKHHFGINKPEKIIPSPDDSKFLLKTFTHIKSNVSVPNKKKVKESKEKEKLERRLLEELLKMFMDSESFYYSLTYDLTNSVQRQSTGERDGRPLWQKVDDRFFWNKYMIQDLTEIGTPDVDFWIIPIIQGFVQIEELVVNYNESSDEEKSSPETPPQESTCVDDIHPRFLVALISRRSRHRAGMRYKRRGVDKNGNVANYVETEQLIHVHNHTLSFIQTRGSVPVFWSQVGYRYNPRPRLDKSEKETVDCFCAHFEEQLKIYKKQVIINLVDQAGREKVIGDAYLKQVLLFNSSKLTYVSFDFHEHCRGMKFENVQTLTDAIYDIILDMKWCWVDQAGVICKQEGIFRVNCMDCLDRTNVVQAAIARVVMEHQLKKLGVMPPEQPLPVKCNRIYQIMWANNGDSISRQYAGTAALKGDFTRTGERKLAGVMKDGVNSANRYYLSRFKDAYRQAVIDLMQGIPVTEDLYSIFTKEKEHEALHKENQRSHQELISQLLQSYMKLLLPGDEKFHGGWALIDCDPSLTDAAHRDVDVLLLLSNSAYYVAYYDDEVDKVNQYQRLSLEDLEKIEIGPEPTLFGKPKFSCMRLHYKCKEASGYFHTLRAVIRSPEEDGKDTLQCIAEMLQITKQAMGLDVPIVEKKLERKSSKPHEDIIGIRSQNQGSLAQGKSFLMSKFSSLNQKVKQTKSNVNIGSLRKLGNFTKPEMKVNFLKPNLKVNLWKSDSSLETMENSGVMDNQVQGESDGDMSSDNDSYHSDEFLTNSKSQEDKQLANSLESVGPTDYILPSCGIIASAPRLGSRSQSASSTDVSIHVPSEATVGHGNGLAKGQESPLKRSPSADNIRVLMGFAKPVDVYCHRFVQDAHNKMTELSETRSVSQNIVEGNQKTNNVSNEENQSQSMGQMPSRPSQLNVSCSLTGPQFLSVEPVHSVVSQKSPSSGSSLLELEAGLCVTPSSESSSSRAVSPFAKIRSSMVQVASITQAGLTHGINLAVAKVQKSPAEPEVANEIQQNELKNMFTQCQTRIIQI", "length": 1132, "header": "tr|A0A9J7JF83-1|A0A9J7JF83_CRIGR Isoform 1 of Phosphatidylinositide phosphatase SAC2 isoform X4 OS=Cricetulus griseus OX=10029 GN=Inpp5f PE=4 SV=1 CANONICAL=A0A9J7JF83-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FIF0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JF83/entry#A0A9J7FIF0-1", "sequence": { "sequence": "MELFQAKDHYILQQGERALWCSRRDGGLQLRPATDLLLAWNPICLGLVEGVIGKIQLHSDLPWWLILIRQKALVGKLPGDHEVCKVTKIAVLSLSELEPQELELELCKKHHFGINKPEKIIPSPDDSKFLLKTFTHIKSNVSVPNKKKVKESKEKEKLERRLLEELLKMFMDSESFYYSLTYDLTNSVQRQSTGERDGRPLWQKVDDRFFWNKYMIQDLTEIGTPDVDFWIIPIIQGFVQIEELVVNYNESSDEEKSSPETPPQESTCVDDIHPRFLVALISRRSRHRAGMRYKRRGVDKNGNVANYVETEQLIHVHNHTLSFIQTRGSVPVFWSQVGYRYNPRPRLDKSEKETVDCFCAHFEEQLKIYKKQVIINLVDQAGREKVIGDAYLKQVLLFNSSKLTYVSFDFHEHCRGMKFENVQTLTDAIYDIILDMKWCWVDQAGVICKQEGIFRVNCMDCLDRTNVVQAAIARVVMEHQGDFTRTGERKLAGVMKDGVNSANRYYLSRFKDAYRQAVIDLMQGIPVTEDLYSIFTKEKEHEALHKENQRSHQELISQLLQSYMKLLLPGDEKFHGGWALIDCDPSLTDAAHRDVDVLLLLSNSAYYVAYYDDEVDKVNQYQRLSLEDLEKIEIGPEPTLFGKPKFSCMRLHYKCKEASGYFHTLRAVIRSPEEDGKDTLQCIAEMLQITKQAMGLDVPIVEKKLERKSSKPHEDIIGIRSQNQGSLAQGKSFLMSKFSSLNQKVKQTKSNVNIGSLRKLGNFTKPEMKVNFLKPNLKVNLWKSDSSLETMENSGVMDNQVQGESDGDMSSDNDSYHSDEFLTNSKSQEDKQLANSLESVGPTDYILPSCGIIASAPRLGSRSQSASSTDVSIHVPSEATVGHGNGLAKGQESPLKRSPSADNIRVLMGFAKPVDVYCHRFVQDAHNKMTELSETRSVSQNIVEGNQKTNNVSNEENQSQSMGQMPSRPSQLNVSCSLTGPQFLSVEPVHSVVSQKSPSSGSSLLELEAGLCVTPSSESSSSRAVSPFAKIRSSMVQVASITQAGLTHGINLAVAKVQKSPAEPEVANEIQQNELKNMFTQCQTRIIQI", "length": 1089, "header": "tr|A0A9J7FIF0-1|A0A9J7JF83_CRIGR Computationally mapped isoform of Phosphatidylinositide phosphatase SAC2 isoform X4 OS=Cricetulus griseus OX=10029 GN=Inpp5f PE=4 SV=1 CANONICAL=A0A9J7JF83-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JBE5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JF83/entry#A0A9J7JBE5-1", "sequence": { "sequence": "MELFQAKDHYILQQGERALWCSRRDGGLQLRPATDLLLAWNPICLGLVEGVIGKIQLHSDLPWWLILIRQKALVGKLPGDHEVCKVTKIAVLSLSELEPQELELELCKKHHFGINKPEKIIPSPDDSKFLLKTFTHIKSNVSVPNKKKVKESKEKEKLERRLLEELLKMFMDSESFYYSLTYDLTNSVQRQSTGERDGRPLWQKVDDRFFWNKYMIQDLTEIGTPDVDFWIIPIIQGFVQIEELVVNYNESSDEEKSSPETPPQESTCVDDIHPRFLVALISRRSRHRAGMRYKRRGVDKNGNVANYVETEQLIHVHNHTLSFIQTRGSVPVFWSQVGYRYNPRPRLDKSEKETVDCFCAHFEEQLKIYKKQVIINLVDQAGREKVIGDAYLKQVLLFNSSKLTYVSFDFHEHCRGMKFENVQTLTDAIYDIILDMKWCWVDQAGVICKQEGIFRVNCMDCLDRTNVVQAAIARVVMEHQLKKLGVMPPEQPLPVKCNRIYQIMWANNGDSISRQYAGTAALKGDFTRTGERKLAGVMKDGVNSANRYYLSRFKDAYRQAVIDLMQGIPVTEDLYSIFTKEKEHEALHKENQRSHQELISQLLQSYMKLLLPGDEKFHGGWALIDCDPSLTDAAHRDVDVLLLLSNSAYYVAYYDDEVDKVNQYQRLSLEDLEKIEIGPEPTLFGKPKFSCMRLHYKCKEASGYFHTLRAVIRSPEEDGKGKAVSLTKTSLVSDLKTKALWPRGKVF", "length": 747, "header": "tr|A0A9J7JBE5-1|A0A9J7JF83_CRIGR Computationally mapped isoform of Phosphatidylinositide phosphatase SAC2 isoform X4 OS=Cricetulus griseus OX=10029 GN=Inpp5f PE=4 SV=1 CANONICAL=A0A9J7JF83-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JF83-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JF83/entry#A0A9J7JF83-1", "sequence": { "sequence": "MELFQAKDHYILQQGERALWCSRRDGGLQLRPATDLLLAWNPICLGLVEGVIGKIQLHSDLPWWLILIRQKALVGKLPGDHEVCKVTKIAVLSLSELEPQELELELCKKHHFGINKPEKIIPSPDDSKFLLKTFTHIKSNVSVPNKKKVKESKEKEKLERRLLEELLKMFMDSESFYYSLTYDLTNSVQRQSTGERDGRPLWQKVDDRFFWNKYMIQDLTEIGTPDVDFWIIPIIQGFVQIEELVVNYNESSDEEKSSPETPPQESTCVDDIHPRFLVALISRRSRHRAGMRYKRRGVDKNGNVANYVETEQLIHVHNHTLSFIQTRGSVPVFWSQVGYRYNPRPRLDKSEKETVDCFCAHFEEQLKIYKKQVIINLVDQAGREKVIGDAYLKQVLLFNSSKLTYVSFDFHEHCRGMKFENVQTLTDAIYDIILDMKWCWVDQAGVICKQEGIFRVNCMDCLDRTNVVQAAIARVVMEHQLKKLGVMPPEQPLPVKCNRIYQIMWANNGDSISRQYAGTAALKGDFTRTGERKLAGVMKDGVNSANRYYLSRFKDAYRQAVIDLMQGIPVTEDLYSIFTKEKEHEALHKENQRSHQELISQLLQSYMKLLLPGDEKFHGGWALIDCDPSLTDAAHRDVDVLLLLSNSAYYVAYYDDEVDKVNQYQRLSLEDLEKIEIGPEPTLFGKPKFSCMRLHYKCKEASGYFHTLRAVIRSPEEDGKDTLQCIAEMLQITKQAMGLDVPIVEKKLERKSSKPHEDIIGIRSQNQGSLAQGKSFLMSKFSSLNQKVKQTKSNVNIGSLRKLGNFTKPEMKVNFLKPNLKVNLWKSDSSLETMENSGVMDNQVQGESDGDMSSDNDSYHSDEFLTNSKSQEDKQLANSLESVGPTDYILPSCGIIASAPRLGSRSQSASSTDVSIHVPSEATVGHGNGLAKGQESPLKRSPSADNIRVLMGFAKPVDVYCHRFVQDAHNKMTELSETRSVSQNIVEGNQKTNNVSNEENQSQSMGQMPSRPSQLNVSCSLTGPQFLSVEPVHSVVSQKSPSSGSSLLELEAGLCVTPSSESSSSRAVSPFAKIRSSMVQVASITQAGLTHGINLAVAKVQKSPAEPEVANEIQQNELKNMFTQCQTRIIQI", "length": 1132, "header": "tr|A0A9J7JF83-1|A0A9J7JF83_CRIGR Isoform 1 of Phosphatidylinositide phosphatase SAC2 isoform X4 OS=Cricetulus griseus OX=10029 GN=Inpp5f PE=4 SV=1 CANONICAL=A0A9J7JF83-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K573-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JF83/entry#A0A9J7K573-1", "sequence": { "sequence": "MELFQAKDHYILQQGERALWCSRRDGGLQLRPATDLLLAWNPICLGLVEGVIGKIQLHSDLPWWLILIRQKALVGKLPGDHEVCKVTKIAVLSLSELEPQELELELCKKHHFGINKPEKIIPSPDDSKFLLKTFTHIKSNVSVPNKKKVKESKEKEKLERRLLEELLKMFMDSESFYYSLTYDLTNSVQRQSTGERDGRPLWQKVDDRFFWNKYMIQDLTEIDSGCGLLDHPHYPGFCAD", "length": 240, "header": "tr|A0A9J7K573-1|A0A9J7JF83_CRIGR Computationally mapped isoform of Phosphatidylinositide phosphatase SAC2 isoform X4 OS=Cricetulus griseus OX=10029 GN=Inpp5f PE=4 SV=1 CANONICAL=A0A9J7JF83-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FIF0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIF0" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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"field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7JI53-1", "uniprot_ac": "A0A9J7JI53", "uniprot_id": "A0A9J7JI53_CRIGR", "mass": { "chemical_mass": 177435.0, "monoisotopic_mass": 177435.0 }, "refseq": { "ac": "XP_027260866", "name": "disco-interacting protein 2 homolog C isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260866" }, "gene_names": [ { "name": "LOC100754252", "type": "recommended", "evidence": [ { "id": "A0A9J7JI53", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JI53" } ] }, { "name": "LOC100754252", "type": "synonym", "evidence": [ { "id": "XP_027260866", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260866" } ] } ], "protein_names": [ { "name": "Disco-interacting protein 2 homolog C isoform X2", "type": "synonym", "evidence": [ { "id": "A0A9J7JI53", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JI53/entry#names_and_taxonomy" } ] }, { "name": "disco-interacting protein 2 homolog C isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027260866", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260866" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027260866", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260866" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JI53", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JI53" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100754252", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JI53", "locus": {} } ], "crossref": [ { "id": "cd05905", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05905", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100754252", "url": "https://www.ncbi.nlm.nih.gov/gene/100754252", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000873", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000873", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR010506", "url": "https://www.ebi.ac.uk/interpro/entry/IPR010506", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR025110", "url": "https://www.ebi.ac.uk/interpro/entry/IPR025110", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR037337", "url": "https://www.ebi.ac.uk/interpro/entry/IPR037337", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR042099", "url": "https://www.ebi.ac.uk/interpro/entry/IPR042099", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR045851", "url": "https://www.ebi.ac.uk/interpro/entry/IPR045851", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100754252", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754252", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JI53", "url": "https://www.orthodb.org/?gene=A0A9J7JI53", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22754", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22754", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22754:SF33", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22754:SF33", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00501", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00501", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF06464", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF06464", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF23024", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF23024", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027260866", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260866", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FIN7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIN7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FIN7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIN7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FLU5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLU5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FLU5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FLU5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JHQ3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JHQ3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JHQ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JHQ3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JI53", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JI53", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JI53-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JI53-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MADRSLEGMALPLEVRARLAELELELSEGDITQKGYEKKRSKLIGAYLPQPPTANGAAVVRCRLQPGEGVPRRPFRSTHIGVCDIREAAARERAASAAGNRPLFYFRFGVDQALPQERRAPVTPSSASRYHRRRSSGSRDERYRSDVHTEAVQAALAKHKERKMAVPMPSKRRSLVVQTSMDAYTPPDTSSGSEDEGSVQGDSQGTPTSSQGSINMEHWISQAIHGSTTSTTSSSSTQSGGSGAAHRLADVMAQTHIENHSAPPDVTTYTSEHSIQVERPQGSTTSRTAPKYGNAELMETGDGVPVSSRVSAKIQQLVNTLKRPKRPPLREFFVDDFEELLEVQQPDPNQPKPEGAQMLATRGEQLGVVTNWPPSLEAALQRWGTISPKAPCLTTMDTNGKPLYILTYGKLWTRSMKVAYNILHKLGTKQEPMVRPGDRVALVFPNNDPAAFMVAFYGCLLAEVVPVPIEVPLTRKDAGSQQIGFLLGSCGVTVALTSDACHKGLPKSPTGEIPQFKGWPKLLWFVTESKHLSKPPRDWFPHIKDANNDTAYIEYKTCKDGSVLGVTVTRIALLTHCQALTQACGYTEAETIVNVLDFKKDVGLWHGILTSVMNMMHVISIPYSLMKVNPLSWIQKVCQYKAKVACVKSRDMHWALVAHRDQRDVNLSSLRMLIVADGANPWSISSCDAFLNVFQSKGLRQEVICPCASSPEALTVAIRRPTDDSNQPPGRGVLSMHGLTYGVIRVDSEEKLSVLTVQDVGLVMPGAIMCSVKPDGIPQLCRTDEIGELCVCAVATGTSYYGLSGMTKNTFEVFPMTSSGAPISEYPFIRTGLLGFVGPGGLVFVVGKMDGLMVVSGRRHNADDIVATALAVEPMKFVYRGRIAVFSVTVLHDERIVIVAEQRPDSTEEDSFQWMSRVLQAIDSIHQVGVYCLALVPANTLPKTPLGGIHLSETKQLFLEGSLHPCNVLMCPHTCVTNLPKPRQKQPEIGPASVMVGNLVSGKRIAQASGRDLGQIEDNDQARKVRTEFLFLSEVLQWRAQTTPDHLLYTLLNCRGTIANSLTCVQLHKRAEKIAVMLMERGHLQDGDHVALVYPPGIDLIAAFYGCLYAGCVPITVRPPHPQNIATTLPTVKMIVEVSRSACLMTTQLICKLLRSREAAAAVDVRTWPLILDTDDLPKKRPAQIYKPSNPDTLAYLDFSVSTTGMLAGVKMSHAATSAFCRSIKLQCELYPSREVAICLDPYCGLGFVLWCLCSVYSGHQSILIPPSELETNPALWLLAVSQYKVRDTFCSYSVMELCTKGLGSQTESLKARGLDLSRVRTCVVVAEERPRIALTQSFSKLFKDLGLHPRAVSTSFGCRVNLAICLQGTSGPDPTTVYVDMRALRHDRVRLVERGSPHSLPLMESGKILPGVRIIIANPETKGPLGDSHLGEIWVHSAHNASGYFTIYGDESLQSDHFNSRLSFGDTQTIWARTGYLGFLRRTELTDANGERHDALYVVGALDEAMELRGMRYHPIDIETSVIRAHKSVTECAVFTWTNLLVVVVELDGSEQEALDLVPLVTNVVLEEHYLIVGVVVVVDIGVIPINSRGEKQRMHLRDGFLADQLDPIYVAYNM", "length": 1616, "header": "tr|A0A9J7JI53-1|A0A9J7JI53_CRIGR Isoform 1 of Disco-interacting protein 2 homolog C isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100754252 PE=3 SV=1 CANONICAL=A0A9J7JI53-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FIN7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JI53/entry#A0A9J7FIN7-1", "sequence": { "sequence": "MADRSLEGMALPLEVRARLAELELELSEGDITQKGYEKKRSKLIGAYLPQPPRVDQALPQERRAPVTPSSASRYHRRRSSGSRDERYRSDVHTEAVQAALAKHKERKMAVPMPSKRRSLVVQTSMDAYTPPDTSSGSEDEGSVQGDSQGTPTSSQGSINMEHWISQAIHGSTTSTTSSSSTQSGGSGAAHRLADVMAQTHIENHSAPPDVTTYTSEHSIQVERPQGSTTSRTAPKYGNAELMETGDGVPVSSRVSAKIQQLVNTLKRPKRPPLREFFVDDFEELLEVQQPDPNQPKPEGAQMLATRGEQLGVVTNWPPSLEAALQRWGTISPKAPCLTTMDTNGKPLYILTYGKLWTRSMKVAYNILHKLGTKQEPMVRPGDRVALVFPNNDPAAFMVAFYGCLLAEVVPVPIEVPLTRKDAGSQQIGFLLGSCGVTVALTSDACHKGLPKSPTGEIPQFKGWPKLLWFVTESKHLSKPPRDWFPHIKDANNDTAYIEYKTCKDGSVLGVTVTRIALLTHCQALTQACGYTEAETIVNVLDFKKDVGLWHGILTSVMNMMHVISIPYSLMKVNPLSWIQKVCQYKAKVACVKSRDMHWALVAHRDQRDVNLSSLRMLIVADGANPWSISSCDAFLNVFQSKGLRQEVICPCASSPEALTVAIRRPTDDSNQPPGRGVLSMHGLTYGVIRVDSEEKLSVLTVQDVGLVMPGAIMCSVKPDGIPQLCRTDEIGELCVCAVATGTSYYGLSGMTKNTFEVFPMTSSGAPISEYPFIRTGLLGFVGPGGLVFVVGKMDGLMVVSGRRHNADDIVATALAVEPMKFVYRGRIAVFSVTVLHDERIVIVAEQRPDSTEEDSFQWMSRVLQAIDSIHQVGVYCLALVPANTLPKTPLGGIHLSETKQLFLEGSLHPCNVLMCPHTCVTNLPKPRQKQPEIGPASVMVGNLVSGKRIAQASGRDLGQIEDNDQARKVRTEFLFLSEVLQWRAQTTPDHLLYTLLNCRGTIANSLTCVQLHKRAEKIAVMLMERGHLQDGDHVALVYPPGIDLIAAFYGCLYAGCVPITVRPPHPQNIATTLPTVKMIVEVSRSACLMTTQLICKLLRSREAAAAVDVRTWPLILDTDDLPKKRPAQIYKPSNPDTLAYLDFSVSTTGMLAGVKMSHAATSAFCRSIKLQCELYPSREVAICLDPYCGLGFVLWCLCSVYSGHQSILIPPSELETNPALWLLAVSQYKVRDTFCSYSVMELCTKGLGSQTESLKARGLDLSRVRTCVVVAEERPRIALTQSFSKLFKDLGLHPRAVSTSFGCRVNLAICLQGTSGPDPTTVYVDMRALRHDRVRLVERGSPHSLPLMESGKILPGVRIIIANPETKGPLGDSHLGEIWVHSAHNASGYFTIYGDESLQSDHFNSRLSFGDTQTIWARTGYLGFLRRTELTDANGERHDALYVVGALDEAMELRGMRYHPIDIETSVIRAHKSVTECAVFTWTNLLVVVVELDGSEQEALDLVPLVTNVVLEEHYLIVGVVVVVDIGVIPINSRGEKQRMHLRDGFLADQLDPIYVAYNM", "length": 1560, "header": "tr|A0A9J7FIN7-1|A0A9J7JI53_CRIGR Computationally mapped isoform of Disco-interacting protein 2 homolog C isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100754252 PE=3 SV=1 CANONICAL=A0A9J7JI53-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FLU5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JI53/entry#A0A9J7FLU5-1", "sequence": { "sequence": "MADRSLEGMALPLEVRARLAELELELSEGDITQKGYEKKRSKLIGAYLPQPPRVDQALPQERRAPVTPSSASRYHRRRSSGSRDERYRSDVHTEAVQAALAKHKERKMAVPMPSKRRSLVVQTSMDAYTPPDTSSGSEDEGSVQGDSQGTPTSSQGSINMEHWISQAIHGSTTSTTSSSSTQSGGSGAAHRLADVMAQTHIENHSAPPDVTTYTSEHSIQVERPQGSTTSRTAPKYGNAELMETGDGVPVSSRVSAKIQQLVNTLKRPKRPPLREFFVDDFEELLEVQQPDPNQPKPEGAQMLATRGEQLGVVTNWPPSLEAALQRWGTISPKAPCLTTMDTNGKPLYILTYGKLWTRSMKVAYNILHKLGTKQEPMVRPGDRVALVFPNNDPAAFMVAFYGCLLAEVVPVPIEVPLTRKDAGSQQIGFLLGSCGVTVALTSDACHKGLPKSPTGEIPQFKGWPKLLWFVTESKHLSKPPRDWFPHIKDANNDTAYIEYKTCKDGSVLGVTVTRIALLTHCQALTQACGYTEAETIVNVLDFKKDVGLWHGILTSVMNMMHVISIPYSLMKVNPLSWIQKVCQYKAKVACVKSRDMHWALVAHRDQRDVNLSSLRMLIVADGANPWSISSCDAFLNVFQSKGLRQEVICPCASSPEALTVAIRRPTDDSNQPPGRGVLSMHGLTYGVIRVDSEEKLSVLTVQDVGLVMPGAIMCSVKPDGIPQLCRTDEIGELCVCAVATGTSYYGLSGMTKNTFEVFPMTSSGAPISEYPFIRTGLLGFVGPGGLVFVVGKMDGLMVVSGRRHNADDIVATALAVEPMKFVYRGRIAVFSVTVLHDERIVIVAEQRPDSTEEDSFQWMSRVLQAIDSIHQVGVYCLALVPANTLPKTPLGGIHLSETKQLFLEGSLHPCNVLMCPHTCVTNLPKPRQKQPEIGPASVMVGNLVSGKRIAQASGRDLGQIEDNDQARKFLFLSEVLQWRAQTTPDHLLYTLLNCRGTIANSLTCVQLHKRAEKIAVMLMERGHLQDGDHVALVYPPGIDLIAAFYGCLYAGCVPITVRPPHPQNIATTLPTVKMIVEVSRSACLMTTQLICKLLRSREAAAAVDVRTWPLILDTDDLPKKRPAQIYKPSNPDTLAYLDFSVSTTGMLAGVKMSHAATSAFCRSIKLQCELYPSREVAICLDPYCGLGFVLWCLCSVYSGHQSILIPPSELETNPALWLLAVSQYKVRDTFCSYSVMELCTKGLGSQTESLKARGLDLSRVRTCVVVAEERPRIALTQSFSKLFKDLGLHPRAVSTSFGCRVNLAICLQGTSGPDPTTVYVDMRALRHDRVRLVERGSPHSLPLMESGKILPGVRIIIANPETKGPLGDSHLGEIWVHSAHNASGYFTIYGDESLQSDHFNSRLSFGDTQTIWARTGYLGFLRRTELTDANGERHDALYVVGALDEAMELRGMRYHPIDIETSVIRAHKSVTECAVFTWTNLLVVVVELDGSEQEALDLVPLVTNVVLEEHYLIVGVVVVVDIGVIPINSRGEKQRMHLRDGFLADQLDPIYVAYNM", "length": 1556, "header": "tr|A0A9J7FLU5-1|A0A9J7JI53_CRIGR Computationally mapped isoform of Disco-interacting protein 2 homolog C isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100754252 PE=3 SV=1 CANONICAL=A0A9J7JI53-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JHQ3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JI53/entry#A0A9J7JHQ3-1", "sequence": { "sequence": "MADRSLEGMALPLEVRARLAELELELSEGDITQKGYEKKRSKLIGAYLPQPPTANGAAVVRCRLQPGEGVPRRPFRSTHIGVCDIREAAARERAASAAGNRPLFYFRFGVDQALPQERRAPVTPSSASRYHRRRSSGSRDERYRSDVHTEAVQAALAKHKERKMAVPMPSKRRSLVVQTSMDAYTPPDTSSGSEDEGSVQGDSQGTPTSSQGSINMEHWISQAIHGSTTSTTSSSSTQSGGSGAAHRLADVMAQTHIENHSAPPDVTTYTSEHSIQVERPQGSTTSRTAPKYGNAELMETGDGVPVSSRVSAKIQQLVNTLKRPKRPPLREFFVDDFEELLEVQQPDPNQPKPEGAQMLATRGEQLGVVTNWPPSLEAALQRWGTISPKAPCLTTMDTNGKPLYILTYGKLWTRSMKVAYNILHKLGTKQEPMVRPGDRVALVFPNNDPAAFMVAFYGCLLAEVVPVPIEVPLTRKDAGSQQIGFLLGSCGVTVALTSDACHKGLPKSPTGEIPQFKGWPKLLWFVTESKHLSKPPRDWFPHIKDANNDTAYIEYKTCKDGSVLGVTVTRIALLTHCQALTQACGYTEAETIVNVLDFKKDVGLWHGILTSVMNMMHVISIPYSLMKVNPLSWIQKVCQYKAKVACVKSRDMHWALVAHRDQRDVNLSSLRMLIVADGANPWSISSCDAFLNVFQSKGLRQEVICPCASSPEALTVAIRRPTDDSNQPPGRGVLSMHGLTYGVIRVDSEEKLSVLTVQDVGLVMPGAIMCSVKPDGIPQLCRTDEIGELCVCAVATGTSYYGLSGMTKNTFEVFPMTSSGAPISEYPFIRTGLLGFVGPGGLVFVVGKMDGLMVVSGRRHNADDIVATALAVEPMKFVYRGRIAVFSVTVLHDERIVIVAEQRPDSTEEDSFQWMSRVLQAIDSIHQVGVYCLALVPANTLPKTPLGGIHLSETKQLFLEGSLHPCNVLMCPHTCVTNLPKPRQKQPEIGPASVMVGNLVSGKRIAQASGRDLGQIEDNDQARKFLFLSEVLQWRAQTTPDHLLYTLLNCRGTIANSLTCVQLHKRAEKIAVMLMERGHLQDGDHVALVYPPGIDLIAAFYGCLYAGCVPITVRPPHPQNIATTLPTVKMIVEVSRSACLMTTQLICKLLRSREAAAAVDVRTWPLILDTDDLPKKRPAQIYKPSNPDTLAYLDFSVSTTGMLAGVKMSHAATSAFCRSIKLQCELYPSREVAICLDPYCGLGFVLWCLCSVYSGHQSILIPPSELETNPALWLLAVSQYKVRDTFCSYSVMELCTKGLGSQTESLKARGLDLSRVRTCVVVAEERPRIALTQSFSKLFKDLGLHPRAVSTSFGCRVNLAICLQGTSGPDPTTVYVDMRALRHDRVRLVERGSPHSLPLMESGKILPGVRIIIANPETKGPLGDSHLGEIWVHSAHNASGYFTIYGDESLQSDHFNSRLSFGDTQTIWARTGYLGFLRRTELTDANGERHDALYVVGALDEAMELRGMRYHPIDIETSVIRAHKSVTECAVFTWTNLLVVVVELDGSEQEALDLVPLVTNVVLEEHYLIVGVVVVVDIGVIPINSRGEKQRMHLRDGFLADQLDPIYVAYNM", "length": 1612, "header": "tr|A0A9J7JHQ3-1|A0A9J7JHQ3_CRIGR Computationally mapped isoform of Disco-interacting protein 2 homolog C isoform X3 OS=Cricetulus griseus OX=10029 GN=LOC100754252 PE=3 SV=1 CANONICAL=A0A9J7JI53-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JI53-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JI53/entry#A0A9J7JI53-1", "sequence": { "sequence": "MADRSLEGMALPLEVRARLAELELELSEGDITQKGYEKKRSKLIGAYLPQPPTANGAAVVRCRLQPGEGVPRRPFRSTHIGVCDIREAAARERAASAAGNRPLFYFRFGVDQALPQERRAPVTPSSASRYHRRRSSGSRDERYRSDVHTEAVQAALAKHKERKMAVPMPSKRRSLVVQTSMDAYTPPDTSSGSEDEGSVQGDSQGTPTSSQGSINMEHWISQAIHGSTTSTTSSSSTQSGGSGAAHRLADVMAQTHIENHSAPPDVTTYTSEHSIQVERPQGSTTSRTAPKYGNAELMETGDGVPVSSRVSAKIQQLVNTLKRPKRPPLREFFVDDFEELLEVQQPDPNQPKPEGAQMLATRGEQLGVVTNWPPSLEAALQRWGTISPKAPCLTTMDTNGKPLYILTYGKLWTRSMKVAYNILHKLGTKQEPMVRPGDRVALVFPNNDPAAFMVAFYGCLLAEVVPVPIEVPLTRKDAGSQQIGFLLGSCGVTVALTSDACHKGLPKSPTGEIPQFKGWPKLLWFVTESKHLSKPPRDWFPHIKDANNDTAYIEYKTCKDGSVLGVTVTRIALLTHCQALTQACGYTEAETIVNVLDFKKDVGLWHGILTSVMNMMHVISIPYSLMKVNPLSWIQKVCQYKAKVACVKSRDMHWALVAHRDQRDVNLSSLRMLIVADGANPWSISSCDAFLNVFQSKGLRQEVICPCASSPEALTVAIRRPTDDSNQPPGRGVLSMHGLTYGVIRVDSEEKLSVLTVQDVGLVMPGAIMCSVKPDGIPQLCRTDEIGELCVCAVATGTSYYGLSGMTKNTFEVFPMTSSGAPISEYPFIRTGLLGFVGPGGLVFVVGKMDGLMVVSGRRHNADDIVATALAVEPMKFVYRGRIAVFSVTVLHDERIVIVAEQRPDSTEEDSFQWMSRVLQAIDSIHQVGVYCLALVPANTLPKTPLGGIHLSETKQLFLEGSLHPCNVLMCPHTCVTNLPKPRQKQPEIGPASVMVGNLVSGKRIAQASGRDLGQIEDNDQARKVRTEFLFLSEVLQWRAQTTPDHLLYTLLNCRGTIANSLTCVQLHKRAEKIAVMLMERGHLQDGDHVALVYPPGIDLIAAFYGCLYAGCVPITVRPPHPQNIATTLPTVKMIVEVSRSACLMTTQLICKLLRSREAAAAVDVRTWPLILDTDDLPKKRPAQIYKPSNPDTLAYLDFSVSTTGMLAGVKMSHAATSAFCRSIKLQCELYPSREVAICLDPYCGLGFVLWCLCSVYSGHQSILIPPSELETNPALWLLAVSQYKVRDTFCSYSVMELCTKGLGSQTESLKARGLDLSRVRTCVVVAEERPRIALTQSFSKLFKDLGLHPRAVSTSFGCRVNLAICLQGTSGPDPTTVYVDMRALRHDRVRLVERGSPHSLPLMESGKILPGVRIIIANPETKGPLGDSHLGEIWVHSAHNASGYFTIYGDESLQSDHFNSRLSFGDTQTIWARTGYLGFLRRTELTDANGERHDALYVVGALDEAMELRGMRYHPIDIETSVIRAHKSVTECAVFTWTNLLVVVVELDGSEQEALDLVPLVTNVVLEEHYLIVGVVVVVDIGVIPINSRGEKQRMHLRDGFLADQLDPIYVAYNM", "length": 1616, "header": "tr|A0A9J7JI53-1|A0A9J7JI53_CRIGR Isoform 1 of Disco-interacting protein 2 homolog C isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100754252 PE=3 SV=1 CANONICAL=A0A9J7JI53-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 123, "start_aa": "Thr", "end_pos": 123, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr123", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FIN7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIN7" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FIN7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FIN7" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100754252", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100754252", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "nervous system development", "id": "GO:0007399", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007399", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JI53", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JI53" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "neuron projection", "id": "GO:0043005", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0043005", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JI53", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JI53" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1441, "end_pos": 1443, "annotation": "n_glycosylation_sequon" }, { "start_pos": 259, "end_pos": 261, "annotation": "n_glycosylation_sequon" }, { "start_pos": 548, "end_pos": 550, "annotation": "n_glycosylation_sequon" }, { "start_pos": 666, "end_pos": 668, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JI53", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JI53" }, { "id": "PS51912", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51912" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "DMAP1-binding", "eco_id": "ECO_0000259", "start_pos": 7, "end_pos": 176, "start_aa": "Glu", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 123 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 1441, "end_pos": 1443 }, { "start_pos": 259, "end_pos": 261 }, { "start_pos": 548, "end_pos": 550 }, { "start_pos": 666, "end_pos": 668 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": 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"end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7JI85-1", "uniprot_ac": "A0A9J7JI85", "uniprot_id": "A0A9J7JI85_CRIGR", "mass": { "chemical_mass": 28646.0, "monoisotopic_mass": 28646.0 }, "refseq": { "ac": "XP_003495903", "name": "protein NipSnap homolog 3A isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495903" }, "gene_names": [ { "name": "LOC100760650", "type": "recommended", "evidence": [ { "id": "A0A9J7JI85", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JI85" } ] }, { "name": "LOC100760650", "type": "synonym", "evidence": [ { "id": "XP_003495903", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495903" } ] } ], "protein_names": [ { "name": "Protein NipSnap homolog 3A isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7JI85", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JI85/entry#names_and_taxonomy" } ] }, { "name": "protein NipSnap homolog 3A isoform X1", "type": "synonym", "evidence": [ { "id": "XP_003495903", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495903" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613603.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003495903", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495903" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JI85", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JI85" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100760650", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JI85", "locus": {} } ], "crossref": [ { "id": "A0A9J7JI85", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JI85", "database": "AlphaFoldDB", "categories": [] }, { "id": "100760650", "url": "https://www.ncbi.nlm.nih.gov/gene/100760650", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR011008", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011008", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR012577", "url": "https://www.ebi.ac.uk/interpro/entry/IPR012577", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051557", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051557", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100760650", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760650", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JI85", "url": "https://www.orthodb.org/?gene=A0A9J7JI85", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR21017", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21017", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR21017:SF22", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21017:SF22", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF07978", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07978", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003495903", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003495903", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FJY4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJY4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FJY4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJY4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JI85", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JI85", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JI85-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JI85-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLALRSCLKKALAPRALATQVCSSFTTGPRQTEGIFYEFCTYYLKPSKMKEFLHNFKKRVHLRTAHSELVGYWSVDFGGRTDRVFHIWKYDNFAHRTAVYKALANNKEWQEQFFIPNLTSIDKQETEIVYLVPWCKIGKPPKKGVYELVTFLMKPGGPALWGDAFERAVNAHENQDYATLIGVFHTEYGTLNRVHVLWWMENADVRAAGRHRSHDDSRVVSTVRESVNYLDIQQNMLLIPEPFSPLK", "length": 247, "header": "tr|A0A9J7JI85-1|A0A9J7JI85_CRIGR Isoform 1 of Protein NipSnap homolog 3A isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100760650 PE=3 SV=1 CANONICAL=A0A9J7JI85-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FJY4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JI85/entry#A0A9J7FJY4-1", "sequence": { "sequence": "MLALRSCLKKALAPRALATQVCSSFTTGPRQTEGIFYEFCTYYLKPSKMKEFLHNFKKRVHLRTAHSELVGYWSVDFGGRTDRVFHIWKYDNFAHRTAVYKALANNKEWQEQFFIPNLTSIDKQETEIVYLVPWCKIGKPPKKVHVLWWMENADVRAAGRHRSHDDSRVVSTVRESVNYLDIQQNMLLIPEPFSPLK", "length": 197, "header": "tr|A0A9J7FJY4-1|A0A9J7JI85_CRIGR Computationally mapped isoform of Protein NipSnap homolog 3A isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100760650 PE=3 SV=1 CANONICAL=A0A9J7JI85-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JI85-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JI85/entry#A0A9J7JI85-1", "sequence": { "sequence": "MLALRSCLKKALAPRALATQVCSSFTTGPRQTEGIFYEFCTYYLKPSKMKEFLHNFKKRVHLRTAHSELVGYWSVDFGGRTDRVFHIWKYDNFAHRTAVYKALANNKEWQEQFFIPNLTSIDKQETEIVYLVPWCKIGKPPKKGVYELVTFLMKPGGPALWGDAFERAVNAHENQDYATLIGVFHTEYGTLNRVHVLWWMENADVRAAGRHRSHDDSRVVSTVRESVNYLDIQQNMLLIPEPFSPLK", "length": 247, "header": "tr|A0A9J7JI85-1|A0A9J7JI85_CRIGR Isoform 1 of Protein NipSnap homolog 3A isoform X1 OS=Cricetulus griseus OX=10029 GN=LOC100760650 PE=3 SV=1 CANONICAL=A0A9J7JI85-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FJY4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJY4" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FJY4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJY4" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100760650", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100760650", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "mitochondrion", "id": "GO:0005739", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005739", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JI85", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JI85" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "mitophagy", "id": "GO:0000423", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000423", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JI85", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JI85" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 117, "end_pos": 119, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JI85", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JI85" }, { "id": "PF07978", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07978" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "NIPSNAP", "eco_id": "ECO_0000259", "start_pos": 37, "end_pos": 136, "start_aa": "Tyr", "end_aa": "Lys", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 117, "end_pos": 119 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": 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"total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7JIE0-1", "uniprot_ac": "A0A9J7JIE0", "uniprot_id": "A0A9J7JIE0_CRIGR", "mass": { "chemical_mass": 73911.0, "monoisotopic_mass": 73911.0 }, "refseq": { "ac": "XP_027259662", "name": "rhophilin-1 isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259662" }, "gene_names": [ { "name": "Rhpn1", "type": "recommended", "evidence": [ { "id": "A0A9J7JIE0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JIE0" } ] }, { "name": "Rhpn1", "type": "synonym", "evidence": [ { "id": "XP_027259662", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259662" } ] } ], "protein_names": [ { "name": "Rhophilin-1 isoform X1", "type": "synonym", "evidence": [ { "id": "A0A9J7JIE0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JIE0/entry#names_and_taxonomy" } ] }, { "name": "rhophilin-1 isoform X1", "type": "synonym", "evidence": [ { "id": "XP_027259662", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259662" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027259662", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259662" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JIE0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JIE0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Rhpn1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JIE0", "locus": {} } ], "crossref": [ { "id": "A0A9J7JIE0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JIE0", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd06712", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd06712", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd11633", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd11633", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100757247", "url": "https://www.ncbi.nlm.nih.gov/gene/100757247", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001478", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001478", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR004328", "url": "https://www.ebi.ac.uk/interpro/entry/IPR004328", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011072", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011072", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036034", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036034", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036274", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036274", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR038499", "url": "https://www.ebi.ac.uk/interpro/entry/IPR038499", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR047138", "url": "https://www.ebi.ac.uk/interpro/entry/IPR047138", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100757247", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757247", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JIE0", "url": "https://www.orthodb.org/?gene=A0A9J7JIE0", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR23031", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23031", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR23031:SF6", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23031:SF6", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00595", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00595", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF02185", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF02185", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF03097", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF03097", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027259662", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027259662", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FJZ5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJZ5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FJZ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJZ5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FK89", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FK89", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FK89-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FK89-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GT73", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GT73", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GT73-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GT73-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JIE0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JIE0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JIE0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JIE0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MILEERPDGPGAGEDSNRLQDDSSIRKDCDSMLPEQPCQLQNQRARLHQQITKELRMRTGAENLYRATSNTWVRETVALELSFVNSNLQLLKEELAELSSSMDMDQPEGESVTIPMIPLGLKETKELDWATPLKELISEHFEEDGTSYETEIQELEDLRQATRTPSRDEVGLDLLAAYYSQLCFLDARFFSPARSPRLLFHWYDSLTGVPAQQQALAFEKGSVLFNIGALHTQIGARQDCSCTEGTIHATEAFQRAAGAFRLLRENFSHAPSLDMSTASLSMLEQLMVAQAQECIFKGLLLPASDTPDNCPAQLQLAQEAAQVAAEYRLVHRAMAQPPVQDYLPSSWTNLAHVKSEHFCALAHYHAAMALCEGSSADKGEVSRHIFQPSTTCEPQGPTASSIQKMPQHPEERRKLAKAHLKRAILGQEEALRLHTLCRVLRKVDLLQVVVTQALRCSLAKYSELEREDDFFEAVEAPNIQPKTHQAPEVKMPSLSQMKVTDLFHRLGPLSVFSTKNRWRLVGPVHMTRGEGGFGFTLRGDSPVLIAAVVPGGQAESAGLKEGDYIVSVNGRPCKWWKHVEVVAQLRGVGEGGVSLQVVSMLPSPEPRSTGPRRAALLWSQKECGFETAMPARARPWPILGWGRKTKQSKTGCHPDSCTNSNCVTCP", "length": 666, "header": "tr|A0A9J7JIE0-1|A0A9J7JIE0_CRIGR Isoform 1 of Rhophilin-1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Rhpn1 PE=3 SV=1 CANONICAL=A0A9J7JIE0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FJZ5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JIE0/entry#A0A9J7FJZ5-1", "sequence": { "sequence": "MILEERPDGPGAGEDSNRLQDDSSIRKDCDSMLPEQPCQLQNQRARLHQQITKELRMRTGAENLYRATSNTWVRETVALELSFVNSNLQLLKEELAELSSSMDMDQPEGESVTIPMIPLGLKETKELDWATPLKELISEHFEEDGTSYETEIQELEDLRQATRTPSRDEVGLDLLAAYYSQLCFLDARFFSPARSPRLLFHWYDSLTGVPAQQQALAFEKGSVLFNIGALHTQIGARQDCSCTEGTIHATEAFQRAAGAFRLLRENFSHAPSLDMSTASLSMLEQLMVAQAQECIFKGLLLPASDTPDNCPAQLQLAQEAAQVAAEYRLVHRAMAQPPVQDYLPSSWTNLAHVKSEHFCALAHYHAAMALCEGSSADKGEVSRHIFQPSTTCEPQGPTASSIQKMPQHPEERRKLAKAHLKRAILGQEEALRLHTLCRVLRKVDLLQVVVTQALRCSLAKYSELEREDDFFEAVEAPNIQPKTHQAPEVKMPSLSQMKGPLSVFSTKNRWRLVGPVHMTRGEGGFGFTLRGDSPVLIAAVVPGGQAESAGLKEGDYIVSVNGRPCKWWKHVEVVAQLRGVGEGGVSLQVVSMLPSPEPRSTGPRRAALLWSQKECGFETAMPARARPWPILGWGRKTKQSKTGCHPDSCTNSNCVTCP", "length": 658, "header": "tr|A0A9J7FJZ5-1|A0A9J7JIE0_CRIGR Computationally mapped isoform of Rhophilin-1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Rhpn1 PE=3 SV=1 CANONICAL=A0A9J7JIE0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FK89-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JIE0/entry#A0A9J7FK89-1", "sequence": { "sequence": "MILEERPDGPGAGEDSNRLQDDSSIRKDCDSMLPEQPCQLQNQRARLHQQITKELRMRTGAENLYRATSNTWVRETVALELSFVNSNLQLLKEELAELSSSMDMDQPEGESVTIPMIPLGLKETKELDWATPLKELISEHFEEDGTSYETEIQELEDLRQATRTPSRDEVGLDLLAAYYSQLCFLDARFFSPARSPRLLFHWYDSLTGVPAQQQALAFEKGSVLFNIGALHTQIGARQDCSCTEGTIHATEAFQRAAGAFRLLRENFSHAPSLDMSTASLSMLEQLMVAQAQECIFKGLLLPASDTPDNCPAQLQLAQEAAQVAAEYRLVHRAMAQPPVQDYLPSSWTNLAHVKSEHFCALAHYHAAMALCEGSSDKGEVSRHIFQPSTTCEPQGPTASSIQKMPQHPEERRKLAKAHLKRAILGQEEALRLHTLCRVLRKVDLLQVVVTQALRCSLAKYSELEREDDFFEAVEAPNIQPKTHQAPEVKMPSLSQMKVTDLFHRLGPLSVFSTKNRWRLVGPVHMTRGEGGFGFTLRGDSPVLIAAVVPGGQAESAGLKEGDYIVSVNGRPCKWWKHVEVVAQLRGVGEGGVSLQVVSMLPSPEPRSTGPRRAALLWSQKECGFETAMPARARPWPILGWGRKTKQSKTGCHPDSCTNSNCVTCP", "length": 665, "header": "tr|A0A9J7FK89-1|A0A9J7JIE0_CRIGR Computationally mapped isoform of Rhophilin-1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Rhpn1 PE=3 SV=1 CANONICAL=A0A9J7JIE0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GT73-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JIE0/entry#A0A9J7GT73-1", "sequence": { "sequence": "MILEERPDGPGAGEDSNRLQDDSSIRKDCDSMLPEQPCQLQNQRARLHQQITKELRMRTGAENLYRATSNTWVRETVALELSFVNSNLQLLKEELAELSSSMDMDQPEGESVTIPMIPLGLKETKELDWATPLKELISEHFEEDGTSYETEIQELEDLRQATRTPSRDEVGLDLLAAYYSQLCFLDARFFSPARSPRLLFHWYDSLTGVPAQQQALAFEKGSVLFNIGALHTQIGARQDCSCTEGTIHATEAFQRAAGAFRLLRENFSHAPSLDMSTASLSMLEQLMVAQAQECIFKGLLLPASDTPDNCPAQLQLAQEAAQVAAEYRLVHRAMAQPPVQDYLPSSWTNLAHVKSEHFCALAHYHAAMALCEGSSADKGEVSRHIFQPSTTCEPQGPTASSIQKMPQHPEERRKLAKAHLKRAILGQEEALRLHTLCRVLRKVDLLQVVVTQALRCSLAKYSELEREDDFFEAVEAPNIQPKTHQAPEVKMPSLSQMKVTDLFHRLSAGLKEGDYIVSVNGRPCKWWKHVEVVAQLRGVGEGGVSLQVVSMLPSPEPRSTGPRRAALLWSQKECGFETAMPARARPWPILGWGRKTKQSKTGCHPDSCTNSNCVTCP", "length": 617, "header": "tr|A0A9J7GT73-1|A0A9J7JIE0_CRIGR Computationally mapped isoform of Rhophilin-1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Rhpn1 PE=3 SV=1 CANONICAL=A0A9J7JIE0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JIE0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JIE0/entry#A0A9J7JIE0-1", "sequence": { "sequence": "MILEERPDGPGAGEDSNRLQDDSSIRKDCDSMLPEQPCQLQNQRARLHQQITKELRMRTGAENLYRATSNTWVRETVALELSFVNSNLQLLKEELAELSSSMDMDQPEGESVTIPMIPLGLKETKELDWATPLKELISEHFEEDGTSYETEIQELEDLRQATRTPSRDEVGLDLLAAYYSQLCFLDARFFSPARSPRLLFHWYDSLTGVPAQQQALAFEKGSVLFNIGALHTQIGARQDCSCTEGTIHATEAFQRAAGAFRLLRENFSHAPSLDMSTASLSMLEQLMVAQAQECIFKGLLLPASDTPDNCPAQLQLAQEAAQVAAEYRLVHRAMAQPPVQDYLPSSWTNLAHVKSEHFCALAHYHAAMALCEGSSADKGEVSRHIFQPSTTCEPQGPTASSIQKMPQHPEERRKLAKAHLKRAILGQEEALRLHTLCRVLRKVDLLQVVVTQALRCSLAKYSELEREDDFFEAVEAPNIQPKTHQAPEVKMPSLSQMKVTDLFHRLGPLSVFSTKNRWRLVGPVHMTRGEGGFGFTLRGDSPVLIAAVVPGGQAESAGLKEGDYIVSVNGRPCKWWKHVEVVAQLRGVGEGGVSLQVVSMLPSPEPRSTGPRRAALLWSQKECGFETAMPARARPWPILGWGRKTKQSKTGCHPDSCTNSNCVTCP", "length": 666, "header": "tr|A0A9J7JIE0-1|A0A9J7JIE0_CRIGR Isoform 1 of Rhophilin-1 isoform X1 OS=Cricetulus griseus OX=10029 GN=Rhpn1 PE=3 SV=1 CANONICAL=A0A9J7JIE0-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 398, "start_aa": "Thr", "end_pos": 398, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr398", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FJZ5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJZ5" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FJZ5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FJZ5" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100757247", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757247", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Biological Process", "total": 3, "go_terms": [ { "name": "signal transduction", "id": "GO:0007165", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007165", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JIE0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JIE0" } ], "pmid": "" }, { "name": "glomerular filtration", "id": "GO:0003094", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0003094", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JIE0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JIE0" } ], "pmid": "" }, { "name": "negative regulation of stress fiber assembly", "id": "GO:0051497", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0051497", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JIE0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JIE0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 266, "end_pos": 268, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JIE0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JIE0" }, { "id": "PS51180", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51180" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "BRO1", "eco_id": "ECO_0000259", "start_pos": 115, "end_pos": 467, "start_aa": "Pro", "end_aa": "Glu", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7JIE0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JIE0" }, { "id": "PS50106", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50106" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "PDZ", "eco_id": "ECO_0000259", "start_pos": 523, "end_pos": 590, "start_aa": "Pro", "end_aa": "Glu", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7JIE0", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JIE0" }, { "id": "PS51860", "database": "PROSITE", "url": "https://prosite.expasy.org/PS51860" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "REM-1", "eco_id": "ECO_0000259", "start_pos": 30, "end_pos": 104, "start_aa": "Asp", "end_aa": "Met", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 398 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 266, "end_pos": 268 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 1 }, { "field": "total_sites", "count": 1 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 1 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 1 }, { "field": "exact_o_linked_sites", "count": 1 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7JGC2-1", "uniprot_ac": "A0A9J7JGC2", "uniprot_id": "A0A9J7JGC2_CRIGR", "mass": { "chemical_mass": 443432.0, "monoisotopic_mass": 443432.0 }, "refseq": { "ac": "XP_027268520", "name": "golgin subfamily B member 1 isoform X11", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027268520" }, "gene_names": [ { "name": "Golgb1", "type": "recommended", "evidence": [ { "id": "A0A9J7JGC2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGC2" } ] }, { "name": "Golgb1", "type": "synonym", "evidence": [ { "id": "XP_027268520", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027268520" } ] } ], "protein_names": [ { "name": "Golgin subfamily B member 1 isoform X11", "type": "synonym", "evidence": [ { "id": "A0A9J7JGC2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGC2/entry#names_and_taxonomy" } ] }, { "name": "golgin subfamily B member 1 isoform X11", "type": "synonym", "evidence": [ { "id": "XP_027268520", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027268520" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048597.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027268520", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027268520" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JGC2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGC2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Golgb1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGC2", "locus": {} } ], "crossref": [ { "id": "100764942", "url": "https://www.ncbi.nlm.nih.gov/gene/100764942", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026202", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026202", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100764942", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764942", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JGC2", "url": "https://www.orthodb.org/?gene=A0A9J7JGC2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR18887", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR18887", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR18887:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR18887:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "XP_027268520", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027268520", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7FTQ9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTQ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FTQ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTQ9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FTS1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTS1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FTS1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTS1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FU68", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FU68", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FU68-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FU68-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FU82", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FU82", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FU82-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FU82-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FUI7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUI7", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FUI7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUI7-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FUK8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUK8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FUK8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUK8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FUW8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUW8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FUW8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FUW8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FVT1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVT1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FVT1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVT1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FVU1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVU1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FVU1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FVU1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FWN8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWN8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FWN8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWN8-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FWW0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWW0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FWW0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FWW0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FY00", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FY00", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FY00-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FY00-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FYZ2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYZ2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7FYZ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FYZ2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GXH5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GXH5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GXH5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GXH5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GYM3", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GYM3", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GYM3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GYM3-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GZV0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZV0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GZV0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GZV0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H089", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H089", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H089-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H089-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H1H9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1H9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7H1H9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7H1H9-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JGC2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGC2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JGC2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGC2-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JGD0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGD0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JGD0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGD0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JKY5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKY5", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JKY5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JKY5-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JMV4", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMV4", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JMV4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMV4-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JMW0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMW0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JMW0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JMW0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JNR0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNR0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JNR0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNR0-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JNR6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNR6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JNR6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JNR6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JPE6", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPE6", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JPE6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JPE6-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K8W9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8W9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K8W9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K8W9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLSRLSGLANIVIHELSGNNYGQNMTAPLEAASDMELDNSIQEDILQRLADSEKLVVELKDIIKQKDVQLQQKDEVLQEERKAADIKIKKIKLHAKAKFTALNKHVEELKAQGGTASPTEQQAEEQPSKLDKSSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELIKTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEEFILMKQQLQKKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSKTQAEQAAQLDKSSAEMEKFVLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMLQEKKELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMLQEKKELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLSSMQQVVREKDARFETQVRLHEDELLQLVTQSDVETEMQQKLRVMQRKLEEHEEALLGRAQVVELLQQELTLAEQKNEALSHQLLQLEAENGTLKNTIETERQESKILMEKVELEVAERKLSFHNQQEEMHQLQGKLEQASQAQAELETQYSALEQRHRAEMEEKDAYILSLQKTEQELQSACDALKEENSELLREKSEQAAESARAIEQLEDQLQQKSKEIRQFVDIPNLQKHETASQTSLPDVYNEGTQAVTEENITSLQKRVMELEDEKRALLLCTVELEELKAENEKLSSQITLLETKNRSGETDGAVCEVPDVTQFSKSDSLTKKSGQDDPENTFSQKHKELSVLLVEMTEAQEEIAFLKSQLQGKRSDGNSEVLDQKEVKVLESEGPLSVTAGDSPFMLNEESSVPAAEKEEQDSTKDQPPPSEAGSPNEAAVDLKSSSVPDACQCHQSELESLKTQIFKLETSLHKAEEIHEKNLDEKDKEISSLTELIDELKKKAEDAHSTLTVLSEERDQLLSRIKELDVLAELRAQVQELQSSLAEAEKQRGLDYESQKTQHNLLTEQIHSLSIEAKSKDVKIEALQKELDDVQIQCSQQDTQIKSLQSQLQKKESEVIERAEHVKNISEKVEELSQALSQKELEVARMDQLLVEKKKDVETLQQTIQEKDQQVTELSFSMTEKMVQLNEEKFSLGVEIKTLKEQLNVLSRAEEAKKEQVEESHGVISNHSHDESSPVGLLSKEALQQELELLRKESELRKRKLHAALIHRKELLQKVGTLEEELAKAKEECRKEIAHGESEKRKLEPYRENKDDPEKCETSKCREIEVSLKQTISEKEVELQHIKRDLKERMAAEEELQAVVQQMNQNLQDKTKQIDLLQVEISENQATIQKLTTGAKDAGDSAAPVKETHVSSPPSAGSGEHWTADLEGKTSDLEKEKEQLQKKLQEALTSRKVILKKAQEREKHLKEELGKQKDAYSLLQEQFDKQSKEIENMGNQLRQLQIEARESSDSKLPGTNQWEPGLPIQGFEEVSLEDTEQQPAQPAAEFDLHITQPSCPGDAEALQATVSVAQIKAQLIEMEVEKEELELKVSSTASELTKKSEEVFLLQEQISKQGLEIQTWKTASHEAEAHAEILQHELESSKLKLAGLEHLKTLQHELDELQKHMAQKEEEVSYLSGQLSEKEETLTKVQAEMLEQEHLIKALHTQMDMHAKDYEERLKQSQLELCQLKQKSEQVEDETKAKQQIHRKLQAALISRKEALKENKTLQEELSSARDAVEHLTKSLADVESQISVQNKEKDAFLRKLALLQEERDKLIVEVDRSLLENQSLGGSCESLKLALEGLTEDKEKLMKELESLRCSKMAEITEWQEKHKELQKEYEVLLQSYENVSNEAERIQHVVESVRQEKQELYGKLRSIETDKKETEKQLQDAEHEMEEMKEKMRKFAKSKQQKILELEEENDRLRAEAQPIGGAKESMEALLSSNSSLKEELERVKLEYKTLSKEFEALMAEKDILSEEIQGLKHQVEDGILKQASLEATEKSNEQKEETQAMVGKSQEQDSQSGSVKVEVPEGILSVTSAKPGISETFRSHDDINNYLQQLDQLNGRIAELEMEKQCDRELNRTLENEKNALLSQISAKDGELKLLEEEVAKINTLNQQIQEELSRVTKLKEMAEEEKDDLEERLMNQLAELNGSIGNYYQDVTDAQIKNEQLESEMQNLKKCMSELEEEKQQLVKEKTKVETEIRKEYLEKIQGAQKGAGNKSHAKELQELLKEKQQEVKQLQKDCIRYQEKISALEKTVKALEYVQTESQKDLDVTKGNLAQAVEHHKQAQEELSSFKVLLDDTQSEAARVLADNLRLKKELQSNKEAIKNQMKQKDEDLVRRLEQAEEKFLKEKINMQEKLDALHGEKTRVEDTLAEIQVTVAKKDKEMKQLQESLDSTMAQLAAFTKSMSSLQDDRDRVIDEAKKWEQKFGDAIQTKEKEIRLKEENCMALKDQLHQMSIHTEELKTNISRLEHDKEIWGSKAQTELQHQQKVCDTLQGENKELVSQLEETRQLYHNSMNEVAKLESELKDLKDQSSDLNNSLEKCKDHKEKLEGIIKQQEAEIQNCKFSYEQLETDLKASRELTGRLHDEIHMKEQKIVSLLSGKEEAVQVAVAELCQQHNKEIKELEHLLSQEEEENATLEEDNKKAVEKTNQLMETLENIRKENLEQKAQLNSFFKSMASLQDDRDRIISDYQQLEDRHLSVILEKDQLIQEAAAENNKLKEEIRGLRSHMDDLNSENAKLDAELIQYRQDLNEVIVIKDCQQKQLLDVQLLKNKELKNECAKLEEKLKGSEEARQSLQRSSDALQGDKQCLSTELESLKRQVAALQEEGTLGAQLKDKEEEVQRLNAALSSSQKRAAELEEELVCVQKEATRKVSEIEDKLKKELKHLHHDAGIMRNETETAEERVAELARDLVEMEQKLLMVTKENKDLMAQIQSFGRSMSSLQDSRDHATEELGDLKKKYEAVLKELTQLKEHKELRRESDVLSQAAFPLTTTENSLSHLEKLNQQLISKDEQLLHLSSQLEDCHNKVQSFSKAMTSLQTERDHLWSELEKFRKLEEGKQRAAAPSSPSSPAEMQSLKKAMSSLQNDRDRLLKELKNLQQQYLQMNQEVTNLRPLKAQLQEYQEQTKTLQMMKEKLRQENLNWQQELHQLRMEKDAWELHERQMKEQYIMAVSDKDQQLNHLQSLLRASSQTEILSTQSQRQVSLETSASLDGSQNLIHEAETLRTQLNDTLKENHQKELRIQQLNMRLSQLLEEKNILSIQLSDANQSLRENQHHYGDLFRHCAVLERQVHQLQARGPTNVDVAPGAPQEMSEVCRNSDPEATVEPQPSLAEVCSAQQELGELKKLLEEERDQRLTAENALSLAEEQIRRLQEHSEWDSARTPIIGACGSHETAVLIDLPGSTCRRTRSGAGWKRVLRSLCHSRTRVPLLAAMYLLMVHVLLILCFTGHL", "length": 3866, "header": "tr|A0A9J7JGC2-1|A0A9J7JGC2_CRIGR Isoform 1 of Golgin subfamily B member 1 isoform X11 OS=Cricetulus griseus OX=10029 GN=Golgb1 PE=4 SV=1 CANONICAL=A0A9J7JGC2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7FTQ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGC2/entry#A0A9J7FTQ9-1", "sequence": { "sequence": "MLSRLSGLANIVIHELSGNNYGQNMTAPLEAASDMELDNSIQEDILQRLADSEKLVVELKDIIKQKDVQLQQKDEVLQEERKAADIKIKKIKLHAKAKFTALNKHVEELKAQGGTASPTEQQAEEQPSKLDKSSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELIKTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEEFILMKQQLQKKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMLQEKKELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMLQEKKELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLSSMQQVVREKDARFETQVRLHEDELLQLVTQSDVETEMQQKLRVMQRKLEEHEEALLGRAQVVELLQQELTLAEQKNEALSHQLLQLEAENGTLKNTIETERQESKILMEKVELEVAERKLSFHNQQEEMHQLQGKLEQASQAQAELETQYSALEQRHRAEMEEKDAYILSLQKTEQELQSACDALKEENSELLREKSEQAAESARAIEQLEDQLQQKSKEIRQFVDIPNLQKHETASQTSLPDVYNEGTQAVTEENITSLQKRVMELEDEKRALLLCTVELEELKAENEKLSSQITLLETKNRSGETDGAVCEVPDVTQFSKSDSLTKKSGQDDPENTFSQKHKELSVLLVEMTEAQEEIAFLKSQLQGKRSDGNSEVLDQKEVKVLESEGPLSVTAGDSPFMLNEESSVPAAEKEEQDSTKDQPPPSEAGSPNEAAVDLKSSSVPDACQCHQSELESLKTQIFKLETSLHKAEEIHEKNLDEKDKEISSLTELIDELKKKAEDAHSTLTVLSEERDQLLSRIKELDVLAELRAQVQELQSSLAEAEKQRGLDYESQKTQHNLLTEQIHSLSIEAKSKDVKIEALQKELDDVQIQCSQQDTQIKSLQSQLQKKESEVIERAEHVKNISEKVEELSQALSQKELEVARMDQLLVEKKKDVETLQQTIQEKDQQVTELSFSMTEKMVQLNEEKFSLGVEIKTLKEQLNVLSRAEEAKKEQVEESHGVISNHSHDESSPVGLLSKEALQQELELLRKESELRKRKLHAALIHRKELLQKVGTLEEELAKAKEECRKEIAHGESEKRKLEPYRENKDDPEKCETSKCREIEVSLKQTISEKEVELQHIKRDLKERMAAEEELQAVVQQMNQNLQDKTKQIDLLQVEISENQATIQKLTTGAKDAGDSAAPVKETHVSSPPSAGSGEHWTADLEGKTSDLEKEKEQLQKKLQEALTSRKVILKKAQEREKHLKEELGKQKDAYSLLQEQFDKQSKEIENMGNQLRQLQIEARESSDSKLPGTNQWEPGLPIQGFEEVSLEDTEQQPAQPAAEFDLHITQPSCPGDAEALQATVSVAQIKAQLIEMEVEKEELELKVSSTASELTKKSEEVFLLQEQISKQGLEIQTWKTASHEAEAHAEILQHELESSKLKLAGLEHLKTLQHELDELQKHMAQKEEEVSYLSGQLSEKEETLTKVQAEMLEQEHLIKALHTQMDMHAKDYEERLKQSQLELCQLKQKSEQVEDETKAKQQIHRKLQAALISRKEALKENKTLQEELSSARDAVEHLTKSLADVESQISVQNKEKDAFLRKLALLQEERDKLIVEVDRSLLENQSLGGSCESLKLALEGLTEDKEKLMKELESLRCSKMAEITEWQEKHKELQKEYEVLLQSYENVSNEAERIQHVVESVRQEKQELYGKLRSIETDKKETEKQLQDAEHEMEEMKEKMRKFAKSKQQKILELEEENDRLRAEAQPIGGAKESMEALLSSNSSLKEELERVKLEYKTLSKEFEALMAEKDILSEEIQGLKHQVEDGILKQASLEATEKSNEQKEETQAMVGKSQEQDSQSGSVKVEVPEGILSVTSAKPGISETFRSHDDINNYLQQLDQLNGRIAELEMEKQCDRELNRTLENEKNALLSQISAKDGELKLLEEEVAKINTLNQQIQEELSRVTKLKEMAEEEKDDLEERLMNQLAELNGSIGNYYQDVTDAQIKNEQLESEMQNLKKCMSELEEEKQQLVKEKTKVETEIRKEYLEKIQGAQKGAGNKSHAKELQELLKEKQQEVKQLQKDCIRYQEKISALEKTVKALEYVQTESQKDLDVTKGNLAQAVEHHKQAQEELSSFKVLLDDTQSEAARVLADNLRLKKELQSNKEAIKNQMKQKDEDLVRRLEQAEEKFLKEKINMQEKLDALHGEKTRVEDTLAEIQVTVAKKDKEMKQLQESLDSTMAQLAAFTKSMSSLQDDRDRVIDEAKKWEQKFGDAIQTKEKEIRLKEENCMALKDQLHQMSIHTEELKTNISRLEHDKEIWGSKAQTELQHQQKVCDTLQGENKELVSQLEETRQLYHNSMNEVAKLESELKDLKDQSSDLNNSLEKCKDHKEKLEGIIKQQEAEIQNCKFSYEQLETDLKASRELTGRLHDEIHMKEQKIVSLLSGKEEAVQVAVAELCQQHNKEIKELEHLLSQEEEENATLEEDNKKAVEKTNQLMETLENIRKENLEQKAQLNSFFKSMASLQDDRDRIISDYQQLEDRHLSVILEKDQLIQEAAAENNKLKEEIRGLRSHMDDLNSENAKLDAELIQYRQDLNEVIVIKDCQQKQLLDVQLLKNKELKNECAKLEEKLKGSEEARQSLQRSSDALQGDKQCLSTELESLKRQVAALQEEGTLGAQLKDKEEEVQRLNAALSSSQKRAAELEEELVCVQKEATRKVSEIEDKLKKELKHLHHDAGIMRNETETAEERVAELARDLVEMEQKLLMVTKENKDLMAQIQSFGRSMSSLQDSRDHATEELGDLKKKYEAVLKELTQLKEHKELRRESDVLSQAAFPLTTTENSLSHLEKLNQQLISKDEQLLHLSSQLEDCHNKVQSFSKAMTSLQTERDHLWSELEKFRKLEEGKQRAAAPSSPSSPAEMQSLKKAMSSLQNDRDRLLKELKNLQQQYLQMNQEVTNLRPLKAQLQEYQEQTKTLQMMKEKLRQENLNWQQELHQLRMEKDAWELHERQMKEQYIMAVSDKDQQLNHLQSLLRASSQTEILSTQSQRQVSLETSASLDGSQNLIHEAETLRTQLNDTLKENHQKELRIQQLNMRLSQLLEEKNILSIQLSDANQSLRENQHHYGDLFRHCAVLERQVHQLQARGPTNVDVAPGAPQEMSEVCRNSDPEATVEPQPSLAEVCSAQQELGELKKLLEEERDQRLTAENALSLAEEQIRRLQEHSEWDSARTPIIGACGSHETAVLIDLPGSTCRRTRSGAGWKRVLRSLCHSRTRVPLLAAMYLLMVHVLLILCFTGHL", "length": 3827, "header": "tr|A0A9J7FTQ9-1|A0A9J7JGC2_CRIGR Computationally mapped isoform of Golgin subfamily B member 1 isoform X11 OS=Cricetulus griseus OX=10029 GN=Golgb1 PE=4 SV=1 CANONICAL=A0A9J7JGC2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FTS1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGC2/entry#A0A9J7FTS1-1", "sequence": { "sequence": "MLSRLSGLANIVIHELSGNNYGQNMTAPLEAASDMELDNSIQEDILQRLADSEKLVVELKDIIKQKDVQLQQKDEVLQEERKAADIKIKKIKLHAKAKFTALNKHVEELKAQGGTASPTEQQAEEQPSKLDKSSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELIKTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEEFILMKQQLQKKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSKTQAEQAAQKLRVMQRKLEEHEEALLGRAQVVELLQQELTLAEQKNEALSHQLLQLEAENGTLKNTIETERQESKILMEKVELEVAERKLSFHNQQEEMHQLQGKLEQASQAQAELETQYSALEQRHRAEMEEKDAYILSLQKTEQELQSACDALKEENSELLREKSEQAAESARAIEQLEDQLQQKSKEIRQFVDIPNLQKHETASQTSLPDVYNEGTQAVTEENITSLQKRVMELEDEKRALLLCTVELEELKAENEKLSSQITLLETKNRSGETDGAVCEVPDVTQFSKSDSLTKKSGQDDPENTFSQKHKELSVLLVEMTEAQEEIAFLKSQLQGKRSDGNSEVLDQKEVKVLESEGPLSVTAGDSPFMLNEESSVPAAEKEEQDSTKDQPPPSEAGSPNEAAVDLKSSSVPDACQCHQSELESLKTQIFKLETSLHKAEEIHEKNLDEKDKEISSLTELIDELKKKAEDAHSTLTVLSEERDQLLSRIKELDVLAELRAQVQELQSSLAEAEKQRGLDYESQKTQHNLLTEQIHSLSIEAKSKDVKIEALQKELDDVQIQCSQQDTQIKSLQSQLQKKESEVIERAEHVKNISEKVEELSQALSQKELEVARMDQLLVEKKKDVETLQQTIQEKDQQVTELSFSMTEKMVQLNEEKFSLGVEIKTLKEQLNVLSRAEEAKKEQVEESHGVISNHSHDESSPVGLLSKEALQQELELLRKESELRKRKLHAALIHRKELLQKVGTLEEELAKAKEECRKEIAHGESEKRKLEPYRENKDDPEKCETSKCREIEVSLKQTISEKEVELQHIKRDLKERMAAEEELQAVVQQMNQNLQDKTKQIDLLQVEISENQATIQKLTTGAKDAGDSAAPVKETHVSSPPSAGSGEHWTADLEGKTSDLEKEKEQLQKKLQEALTSRKVILKKAQEREKHLKEELGKQKDAYSLLQEQFDKQSKEIENMGNQLRQLQIEARESSDSKLPGTNQWEPGLPIQGFEEVSLEDTEQQPAQPAAEFDLHITQPSCPGDAEALQATVSVAQIKAQLIEMEVEKEELELKVSSTASELTKKSEEVFLLQEQISKQGLEIQTWKTASHEAEAHAEILQHELESSKLKLAGLEHLKTLQHELDELQKHMAQKEEEVSYLSGQLSEKEETLTKVQAEMLEQEHLIKALHTQMDMHAKDYEERLKQSQLELCQLKQKSEQVEDETKAKQQIHRKLQAALISRKEALKENKTLQEELSSARDAVEHLTKSLADVESQISVQNKEKDAFLRKLALLQEERDKLIVEVDRSLLENQSLGGSCESLKLALEGLTEDKEKLMKELESLRCSKMAEITEWQEKHKELQKEYEVLLQSYENVSNEAERIQHVVESVRQEKQELYGKLRSIETDKKETEKQLQDAEHEMEEMKEKMRKFAKSKQQKILELEEENDRLRAEAQPIGGAKESMEALLSSNSSLKEELERVKLEYKTLSKEFEALMAEKDILSEEIQGLKHQVEDGILKQASLEATEKSNEQKEETQAMVGKSQEQDSQSGSVKVEVPEGILSVTSAKPGISETFRSHDDINNYLQQLDQLNGRIAELEMEKQCDRELNRTLENEKNALLSQISAKDGELKLLEEEVAKINTLNQQIQEELSRVTKLKEMAEEEKDDLEERLMNQLAELNGSIGNYYQDVTDAQIKNEQLESEMQNLKKCMSELEEEKQQLVKEKTKVETEIRKEYLEKIQGAQKGAGNKSHAKELQELLKEKQQEVKQLQKDCIRYQEKISALEKTVKALEYVQTESQKDLDVTKGNLAQAVEHHKQAQEELSSFKVLLDDTQSEAARVLADNLRLKKELQSNKEAIKNQMKQKDEDLVRRLEQAEEKFLKEKINMQEKLDALHGEKTRVEDTLAEIQVTVAKKDKEMKQLQESLDSTMAQLAAFTKSMSSLQDDRDRVIDEAKKWEQKFGDAIQTKEKEIRLKEENCMALKDQLHQMSIHTEELKTNISRLEHDKEIWGSKAQTELQHQQKVCDTLQGENKELVSQLEETRQLYHNSMNEVAKLESELKDLKDQSSDLNNSLEKCKDHKEKLEGIIKQQEAEIQNCKFSYEQLETDLKASRELTGRLHDEIHMKEQKIVSLLSGKEEAVQVAVAELCQQHNKEIKELEHLLSQEEEENATLEEDNKKAVEKTNQLMETLENIRKENLEQKAQLNSFFKSMASLQDDRDRIISDYQQLEDRHLSVILEKDQLIQEAAAENNKLKEEIRGLRSHMDDLNSENAKLDAELIQYRQDLNEVIVIKDCQQKQLLDVQLLKNKELKNECAKLEEKLKGSEEARQSLQRSSDALQGDKQCLSTELESLKRQVAALQEEGTLGAQLKDKEEEVQRLNAALSSSQKRAAELEEELVCVQKEATRKVSEIEDKLKKELKHLHHDAGIMRNETETAEERVAELARDLVEMEQKLLMVTKENKDLMAQIQSFGRSMSSLQDSRDHATEELGDLKKKYEAVLKELTQLKEHKELRRESDVLSQAAFPLTTTENSLSHLEKLNQQLISKDEQLLHLSSQLEDCHNKVQSFSKAMTSLQTERDHLWSELEKFRKLEEGKQRAAAPSSPSSPAEMQSLKKAMSSLQNDRDRLLKELKNLQQQYLQMNQEVTNLRPLKAQLQEYQEQTKTLQMMKEKLRQENLNWQQELHQLRMEKDAWELHERQMKEQYIMAVSDKDQQLNHLQSLLRASSQTEILSTQSQRQVSLETSASLDGSQNLIHEAETLRTQLNDTLKENHQKELRIQQLNMRLSQLLEEKNILSIQLSDANQSLRENQHHYGDLFRHCAVLERQVHQLQARGPTNVDVAPGAPQEMSEVCRNSDPEATVEPQPSLAEVCSAQQELGELKKLLEEERDQRLTAENALSLAEEQIRRLQEHSEWDSARTPIIGACGSHETAVLIDLPGSTCRRTRSGAGWKRVLRSLCHSRTRVPLLAAMYLLMVHVLLILCFTGHL", "length": 3426, "header": "tr|A0A9J7FTS1-1|A0A9J7JGC2_CRIGR Computationally mapped isoform of Golgin subfamily B member 1 isoform X11 OS=Cricetulus griseus OX=10029 GN=Golgb1 PE=4 SV=1 CANONICAL=A0A9J7JGC2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FU68-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGC2/entry#A0A9J7FU68-1", "sequence": { "sequence": "MLSRLSGLANIVIHELSGNNYGQNMTAPLEAASDMELDNSIQEDILQRLADSEKLVVELKDIIKQKDVQLQQKDEVLQEERKAADIKIKKIKLHAKAKFTALNKHVEELKAQGGTASPTEQQAEEQPSKLDKSSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELIKTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEEFILMKQQLQKKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSKTQAEQAAQLDKSSAEMEKFVLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMLQEKKELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMLQEKKELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLSSMQQVVREKDARFETQVRLHEDELLQLVTQSDVETEMQQKLRVMQRKLEEHEEALLGRAQVVELLQQELTLAEQKNEALSHQLLQLEAENGTLKNTIETERQESKILMEKVELEVAERKLSFHNQQEEMHQLQGKLEQASQAQAELETQYSALEQRHRAEMEEKDAYILSLQKTEQELQSACDALKEENSELLREKSEQAAESARAIEQLEDQLQQKSKEIRQFVDIPNLQKHETASQTSLPDVYNEGTQAVTEENITSLQKRVMELEDEKRALLLCTVELEELKAENEKLSSQITLLETKNRSGETDGAVCEVPDVTQFSKSDSLTKKSGQDDPENTFSQKHKELSVLLVEMTEAQEEIAFLKSQLQGKRSDGNSEVLDQKEVKVLESEGPLSVTAGDSPFMLNEESSVPAAEKEEQDSTKDQPPPSEAGSPNEAAVDLKSSSVPDACQCHQSELESLKTQIFKLETSLHKAEEIHEKNLDEKDKEISSLTELIDELKKKAEDAHSTLTVLSEERDQLLSRIKELDVLAELRAQVQELQSSLAEAEKQRGLDYESQKTQHNLLTEQIHSLSIEAKSKDVKIEALQKELDDVQIQCSQQDTQIKSLQSQLQKKESEVIERAEHVKNISEKVEELSQALSQKELEVARMDQLLVEKKKDVETLQQTIQEKDQQVTELSFSMTEKMVQLNEEKFSLGVEIKTLKEQLNVLSRAEEAKKEQVEESHGVISNHSHDESSPVGLLSKEALQQELELLRKESELRKRKLHAALIHRKELLQKVGTLEEELAKAKEECRKEIAHGESEKRKLEPYRENKDDPEKCETSKCREIEVSLKQTISEKEVELQHIKRDLKERMAAEEELQAVVQQMNQNLQDKTKQIDLLQVEISENQATIQKLTTGAKDAGDSAAPVKETHVSSPPSAGSGEHWTADLEGKTSDLEKEKEQLQKKLQEALTSRKVILKKAQEREKHLKEELGKQKDAYSLLQEQFDKQSKEIENMGNQLRQLQIEARESSDSKLPGTNQWEPGLPIQGFEEVSLEDTEQQPAQPAAEFDLHITQPSCPGDAEALQATVSVAQIKAQLIEMEVEKEELELKVSSTASELTKKSEEVFLLQEQISKQGLEIQTWKTASHEAEAHAEILQHELESSKLKLAGLEHLKTLQHELDELQKHMAQKEEEVSYLSGQLSEKEETLTKVQAEMLEQEHLIKALHTQMDMHAKDYEERLKQSQLELCQLKQKSEQVEDETKAKQQIHRKLQAALISRKEALKENKTLQEELSSARDAVEHLTKSLADVESQISVQNKEKDAFLRKLALLQEERDKLIVEVDRSLLENQSLGGSCESLKLALEGLTEDKEKLMKELESLRCSKMAEITEWQEKHKELQKEYEVLLQSYENVSNEAERIQHVVESVRQEKQELYGKLRSIETDKKETEKQLQDAEHEMEEMKEKMRKFAKSKQQKILELEEENDRLRAEAQPIGGAKESMEALLSSNSSLKEELERVKLEYKTLSKEFEALMAEKDILSEEIQGLKHQVEDGILKQASLEATEKSNEQKEETQAMVGKSQEQDSQSGSVKVEVPEGILSVTSAKPGISETFRSHDDINNYLQQLDQLNGRIAELEMEKQCDRELNRTLENEKNALLSQISAKDGELKLLEEEVAKINTLNQQIQEELSRVTKLKEMAEEEKDDLEERLMNQLAELNGSIGNYYQDVTDAQIKNEQLESEMQNLKKCMSELEEEKQQLVKEKTKVETEIRKEYLEKIQGAQKGAGNKSHAKELQELLKEKQQEVKQLQKDCIRYQEKISALEKTVKALEYVQTESQKDLDVTKGNLAQAVEHHKQAQEELSSFKVLLDDTQSEAARVLADNLRLKKELQSNKEAIKNQMKQKDEDLVRRLEQAEEKFLKEKINMQEKLDALHGEKTRVEDTLAEIQVTVAKKDKEMKQLQESLDSTMAQLAAFTKSMSSLQDDRDRVIDEAKKWEQKFGDAIQTKEKEIRLKEENCMALKDQLHQMSIHTEELKTNISRLEHDKEIWGSKAQTELQHQQKVCDTLQGENKELVSQLEETRQLYHNSMNEVAKLESELKDLKDQSSDLNNSLEKCKDHKEKLEGIIKQQEAEIQNCKFSYEQLETDLKASRELTGRLHDEIHMKEQKIVSLLSGKEEAVQVAVAELCQQHNKEIKELEHLLSQEEEENATLEEDNKKAVEKTNQLMETLENIRKENLEQKAQLNSFFKSMASLQDDRDRIISDYQQLEDRHLSVILEKDQLIQEAAAENNKLKEEIRGLRSHMDDLNSENAKLDAELIQYRQDLNEVIVIKDCQQKQLLDVQLLKNKELKNECAKLEEKLKGSEEARQSLQRSSDALQGDKQCLSTELESLKRQVAALQEEGTLGAQLKDKEEEVQRLNAALSSSQKRAAELEEELVCVQKEATRKVSEIEDKLKKELKHLHHDAGIMRNETETAEERVAELARDLVEMEQKLLMVTKENKDLMAQIQSFGRSMSSLQDSRDHATEELGDLKKKYEAVLKELTQLKEHKELRRESDVLSQAAFPLTTTENSLSHLEKLNQQLISKDEQLLHLSSQLEDCHNKVQSFSKAMTSLQTERDHLWSELEKFRKLEEGKQRAAAPSSPSSPAEMQSLKKAMSSLQNDRDRLLKELKNLQQQYLQMNQEVTNLRPLKAQLQEYQEQTKTLQMMKEKLRQENLNWQQELHQLRMEKDAWELHERQMKEQYIMAVSDKDQQLNHLQSLLRASSQTEILSTQSQRQVSLETSASLDGSQNLIHEAETLRTQLNDTLKENHQKELRIQQLNMRLSQLLEEKNILSIQLSDANQSLRENQHHYGDLFRHCAVLERQVHQLQARGPTNVDVAPGAPQEMSEVCRNSDPEATVEPQPSLAEVCSAQQELGELKKLLEEERDQRLTAENALSLAEEQIRRLQEHSEWDSARTPIIGACGSHETAVLIDLPGSTCRRTRSGAGWKRVLRSLCHSRTRVPLLAAMYLLMVHVLLILCFTGHL", "length": 3827, "header": "tr|A0A9J7FU68-1|A0A9J7JGC2_CRIGR Computationally mapped isoform of Golgin subfamily B member 1 isoform X11 OS=Cricetulus griseus OX=10029 GN=Golgb1 PE=4 SV=1 CANONICAL=A0A9J7JGC2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FU82-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGC2/entry#A0A9J7FU82-1", "sequence": { "sequence": "MLSRLSGLANIVIHELSGNNYGQNMTAPLEAASDMELDNSIQEDILQRLADSEKLVVELKDIIKQKDVQLQQKDEVLQEERKAADIKIKKIKLHAKAKFTALNKHVEELKAQGGTASPTEQQAEEQPSKLDKSSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMLQEKKELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMLQEKKELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLSSMQQVVREKDARFETQVRLHEDELLQLVTQSDVETEMQQKLRVMQRKLEEHEEALLGRAQVVELLQQELTLAEQKNEALSHQLLQLEAENGTLKNTIETERQESKILMEKVELEVAERKLSFHNQQEEMHQLQGKLEQASQAQAELETQYSALEQRHRAEMEEKDAYILSLQKTEQELQSACDALKEENSELLREKSEQAAESARAIEQLEDQLQQKSKEIRQFVDIPNLQKHETASQTSLPDVYNEGTQAVTEENITSLQKRVMELEDEKRALLLCTVELEELKAENEKLSSQITLLETKNRSGETDGAVCEVPDVTQFSKSDSLTKKSGQDDPENTFSQKHKELSVLLVEMTEAQEEIAFLKSQLQGKRSDGNSEVLDQKEVKVLESEGPLSVTAGDSPFMLNEESSVPAAEKEEQDSTKDQPPPSEAGSPNEAAVDLKSSSVPDACQCHQSELESLKTQIFKLETSLHKAEEIHEKNLDEKDKEISSLTELIDELKKKAEDAHSTLTVLSEERDQLLSRIKELDVLAELRAQVQELQSSLAEAEKQRGLDYESQKTQHNLLTEQIHSLSIEAKSKDVKIEALQKELDDVQIQCSQQDTQIKSLQSQLQKKESEVIERAEHVKNISEKVEELSQALSQKELEVARMDQLLVEKKKDVETLQQTIQEKDQQVTELSFSMTEKMVQLNEEKFSLGVEIKTLKEQLNVLSRAEEAKKEQVEESHGVISNHSHDESSPVGLLSKEALQQELELLRKESELRKRKLHAALIHRKELLQKVGTLEEELAKAKEECRKEIAHGESEKRKLEPYRENKDDPEKCETSKCREIEVSLKQTISEKEVELQHIKRDLKERMAAEEELQAVVQQMNQNLQDKTKQIDLLQVEISENQATIQKLTTGAKDAGDSAAPVKETHVSSPPSAGSGEHWTADLEGKTSDLEKEKEQLQKKLQEALTSRKVILKKAQEREKHLKEELGKQKDAYSLLQEQFDKQSKEIENMGNQLRQLQIEARESSDSKLPGTNQWEPGLPIQGFEEVSLEDTEQQPAQPAAEFDLHITQPSCPGDAEALQATVSVAQIKAQLIEMEVEKEELELKVSSTASELTKKSEEVFLLQEQISKQGLEIQTWKTASHEAEAHAEILQHELESSKLKLAGLEHLKTLQHELDELQKHMAQKEEEVSYLSGQLSEKEETLTKVQAEMLEQEHLIKALHTQMDMHAKDYEERLKQSQLELCQLKQKSEQVEDETKAKQQIHRKLQAALISRKEALKENKTLQEELSSARDAVEHLTKSLADVESQISVQNKEKDAFLRKLALLQEERDKLIVEVDRSLLENQSLGGSCESLKLALEGLTEDKEKLMKELESLRCSKMAEITEWQEKHKELQKEYEVLLQSYENVSNEAERIQHVVESVRQEKQELYGKLRSIETDKKETEKQLQDAEHEMEEMKEKMRKFAKSKQQKILELEEENDRLRAEAQPIGGAKESMEALLSSNSSLKEELERVKLEYKTLSKEFEALMAEKDILSEEIQGLKHQVEDGILKQASLEATEKSNEQKEETQAMVGKSQEQDSQSGSVKVEVPEGILSVTSAKPGISETFRSHDDINNYLQQLDQLNGRIAELEMEKQCDRELNRTLENEKNALLSQISAKDGELKLLEEEVAKINTLNQQIQEELSRVTKLKEMAEEEKDDLEERLMNQLAELNGSIGNYYQDVTDAQIKNEQLESEMQNLKKCMSELEEEKQQLVKEKTKVETEIRKEYLEKIQGAQKGAGNKSHAKELQELLKEKQQEVKQLQKDCIRYQEKISALEKTVKALEYVQTESQKDLDVTKGNLAQAVEHHKQAQEELSSFKVLLDDTQSEAARVLADNLRLKKELQSNKEAIKNQMKQKDEDLVRRLEQAEEKFLKEKINMQEKLDALHGEKTRVEDTLAEIQVTVAKKDKEMKQLQESLDSTMAQLAAFTKSMSSLQDDRDRVIDEAKKWEQKFGDAIQTKEKEIRLKEENCMALKDQLHQMSIHTEELKTNISRLEHDKEIWGSKAQTELQHQQKVCDTLQGENKELVSQLEETRQLYHNSMNEVAKLESELKDLKDQSSDLNNSLEKCKDHKEKLEGIIKQQEAEIQNCKFSYEQLETDLKASRELTGRLHDEIHMKEQKIVSLLSGKEEAVQVAVAELCQQHNKEIKELEHLLSQEEEENATLEEDNKKAVEKTNQLMETLENIRKENLEQKAQLNSFFKSMASLQDDRDRIISDYQQLEDRHLSVILEKDQLIQEAAAENNKLKEEIRGLRSHMDDLNSENAKLDAELIQYRQDLNEVIVIKDCQQKQLLDVQLLKNKELKNECAKLEEKLKGSEEARQSLQRSSDALQGDKQCLSTELESLKRQVAALQEEGTLGAQLKDKEEEVQRLNAALSSSQKRAAELEEELVCVQKEATRKVSEIEDKLKKELKHLHHDAGIMRNETETAEERVAELARDLVEMEQKLLMVTKENKDLMAQIQSFGRSMSSLQDSRDHATEELGDLKKKYEAVLKELTQLKEHKELRRESDVLSQAAFPLTTTENSLSHLEKLNQQLISKDEQLLHLSSQLEDCHNKVQSFSKAMTSLQTERDHLWSELEKFRKLEEGKQRAAAPSSPSSPAEMQSLKKAMSSLQNDRDRLLKELKNLQQQYLQMNQEVTNLRPLKAQLQEYQEQTKTLQMMKEKLRQENLNWQQELHQLRMEKDAWELHERQMKEQYIMAVSDKDQQLNHLQSLLRASSQTEILSTQSQRQVSLETSASLDGSQNLIHEAETLRTQLNDTLKENHQKELRIQQLNMRLSQLLEEKNILSIQLSDANQSLRENQHHYGDLFRHCAVLERQVHQLQARGPTNVDVAPGAPQEMSEVCRNSDPEATVEPQPSLAEVCSAQQELGELKKLLEEERDQRLTAENALSLAEEQIRRLQEHSEWDSARTPIIGACGSHETAVLIDLPGSTCRRTRSGAGWKRVLRSLCHSRTRVPLLAAMYLLMVHVLLILCFTGHL", "length": 3494, "header": "tr|A0A9J7FU82-1|A0A9J7JGC2_CRIGR Computationally mapped isoform of Golgin subfamily B member 1 isoform X11 OS=Cricetulus griseus OX=10029 GN=Golgb1 PE=4 SV=1 CANONICAL=A0A9J7JGC2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FUI7-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGC2/entry#A0A9J7FUI7-1", "sequence": { "sequence": "MLSRLSGLANIVIHELSGNNYGQNMTAPLEAASDMELDNSIQEDILQRLADSEKLVVELKDIIKQKDVQLQQKDEVLQEERKAADIKIKKIKLHAKAKFTALNKHVEELKAQGGTASPTEQQAEEQPSKLDKSSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELIKTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEEFILMKQQLQKKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSKTQAEQAAQLDKSSAEMEKFVLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMLQEKKELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLSSMQQVVREKDARFETQVRLHEDELLQLVTQSDVETEMQQKLRVMQRKLEEHEEALLGRAQVVELLQQELTLAEQKNEALSHQLLQLEAENGTLKNTIETERQESKILMEKVELEVAERKLSFHNQQEEMHQLQGKLEQASQAQAELETQYSALEQRHRAEMEEKDAYILSLQKTEQELQSACDALKEENSELLREKSEQAAESARAIEQLEDQLQQKSKEIRQFVDIPNLQKHETASQTSLPDVYNEGTQAVTEENITSLQKRVMELEDEKRALLLCTVELEELKAENEKLSSQITLLETKNRSGETDGAVCEVPDVTQFSKSDSLTKKSGQDDPENTFSQKHKELSVLLVEMTEAQEEIAFLKSQLQGKRSDGNSEVLDQKEVKVLESEGPLSVTAGDSPFMLNEESSVPAAEKEEQDSTKDQPPPSEAGSPNEAAVDLKSSSVPDACQCHQSELESLKTQIFKLETSLHKAEEIHEKNLDEKDKEISSLTELIDELKKKAEDAHSTLTVLSEERDQLLSRIKELDVLAELRAQVQELQSSLAEAEKQRGLDYESQKTQHNLLTEQIHSLSIEAKSKDVKIEALQKELDDVQIQCSQQDTQIKSLQSQLQKKESEVIERAEHVKNISEKVEELSQALSQKELEVARMDQLLVEKKKDVETLQQTIQEKDQQVTELSFSMTEKMVQLNEEKFSLGVEIKTLKEQLNVLSRAEEAKKEQVEESHGVISNHSHDESSPVGLLSKEALQQELELLRKESELRKRKLHAALIHRKELLQKVGTLEEELAKAKEECRKEIAHGESEKRKLEPYRENKDDPEKCETSKCREIEVSLKQTISEKEVELQHIKRDLKERMAAEEELQAVVQQMNQNLQDKTKQIDLLQVEISENQATIQKLTTGAKDAGDSAAPVKETHVSSPPSAGSGEHWTADLEGKTSDLEKEKEQLQKKLQEALTSRKVILKKAQEREKHLKEELGKQKDAYSLLQEQFDKQSKEIENMGNQLRQLQIEARESSDSKLPGTNQWEPGLPIQGFEEVSLEDTEQQPAQPAAEFDLHITQPSCPGDAEALQATVSVAQIKAQLIEMEVEKEELELKVSSTASELTKKSEEVFLLQEQISKQGLEIQTWKTASHEAEAHAEILQHELESSKLKLAGLEHLKTLQHELDELQKHMAQKEEEVSYLSGQLSEKEETLTKVQAEMLEQEHLIKALHTQMDMHAKDYEERLKQSQLELCQLKQKSEQVEDETKAKQQIHRKLQAALISRKEALKENKTLQEELSSARDAVEHLTKSLADVESQISVQNKEKDAFLRKLALLQEERDKLIVEVDRSLLENQSLGGSCESLKLALEGLTEDKEKLMKELESLRCSKMAEITEWQEKHKELQKEYEVLLQSYENVSNEAERIQHVVESVRQEKQELYGKLRSIETDKKETEKQLQDAEHEMEEMKEKMRKFAKSKQQKILELEEENDRLRAEAQPIGGAKESMEALLSSNSSLKEELERVKLEYKTLSKEFEALMAEKDILSEEIQGLKHQVEDGILKQASLEATEKSNEQKEETQAMVGKSQEQDSQSGSVKVEVPEGILSVTSAKPGISETFRSHDDINNYLQQLDQLNGRIAELEMEKQCDRELNRTLENEKNALLSQISAKDGELKLLEEEVAKINTLNQQIQEELSRVTKLKEMAEEEKDDLEERLMNQLAELNGSIGNYYQDVTDAQIKNEQLESEMQNLKKCMSELEEEKQQLVKEKTKVETEIRKEYLEKIQGAQKGAGNKSHAKELQELLKEKQQEVKQLQKDCIRYQEKISALEKTVKALEYVQTESQKDLDVTKGNLAQAVEHHKQAQEELSSFKVLLDDTQSEAARVLADNLRLKKELQSNKEAIKNQMKQKDEDLVRRLEQAEEKFLKEKINMQEKLDALHGEKTRVEDTLAEIQVTVAKKDKEMKQLQESLDSTMAQLAAFTKSMSSLQDDRDRVIDEAKKWEQKFGDAIQTKEKEIRLKEENCMALKDQLHQMSIHTEELKTNISRLEHDKEIWGSKAQTELQHQQKVCDTLQGENKELVSQLEETRQLYHNSMNEVAKLESELKDLKDQSSDLNNSLEKCKDHKEKLEGIIKQQEAEIQNCKFSYEQLETDLKASRELTGRLHDEIHMKEQKIVSLLSGKEEAVQVAVAELCQQHNKEIKELEHLLSQEEEENATLEEDNKKAVEKTNQLMETLENIRKENLEQKAQLNSFFKSMASLQDDRDRIISDYQQLEDRHLSVILEKDQLIQEAAAENNKLKEEIRGLRSHMDDLNSENAKLDAELIQYRQDLNEVIVIKDCQQKQLLDVQLLKNKELKNECAKLEEKLKGSEEARQSLQRSSDALQGDKQCLSTELESLKRQVAALQEEGTLGAQLKDKEEEVQRLNAALSSSQKRAAELEEELVCVQKEATRKVSEIEDKLKKELKHLHHDAGIMRNETETAEERVAELARDLVEMEQKLLMVTKENKDLMAQIQSFGRSMSSLQDSRDHATEELGDLKKKYEAVLKELTQLKEHKELRRESDVLSQAAFPLTTTENSLSHLEKLNQQLISKDEQLLHLSSQLEDCHNKVQSFSKAMTSLQTERDHLWSELEKFRKLEEGKQRAAAPSSPSSPAEMQSLKKAMSSLQNDRDRLLKELKNLQQQYLQMNQEVTNLRPLKAQLQEYQEQTKTLQMMKEKLRQENLNWQQELHQLRMEKDAWELHERQMKEQYIMAVSDKDQQLNHLQSLLRASSQTEILSTQSQRQVSLETSASLDGSQNLIHEAETLRTQLNDTLKENHQKELRIQQLNMRLSQLLEEKNILSIQLSDANQSLRENQHHYGDLFRHCAVLERQVHQLQARGPTNVDVAPGAPQEMSEVCRNSDPEATVEPQPSLAEVCSAQQELGELKKLLEEERDQRLTAENALSLAEEQIRRLQEHSEWDSARTPIIGACGSHETAVLIDLPGSTCRRTRSGAGWKRVLRSLCHSRTRVPLLAAMYLLMVHVLLILCFTGHL", "length": 3788, "header": "tr|A0A9J7FUI7-1|A0A9J7JGC2_CRIGR Computationally mapped isoform of Golgin subfamily B member 1 isoform X11 OS=Cricetulus griseus OX=10029 GN=Golgb1 PE=4 SV=1 CANONICAL=A0A9J7JGC2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FUK8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGC2/entry#A0A9J7FUK8-1", "sequence": { "sequence": "MLSRLSGLANIVIHELSGNNYGQNMTAPLEAASDMELDNSIQEDILQRLADSEKLVVELKDIIKQKDVQLQQKDEVLQEERKAADIKIKKIKLHAKAKFTALNKHVEELKAQGGTASPTEQQAEEQPSKLDKSSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELIKTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEEFILMKQQLQKKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSKTQAEQAAQLDKSSAEMEKFVLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMLQEKKELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLSSMQQVVREKDARFETQVRLHEDELLQLVTQSDVETEMQQKLRVMQRKLEEHEEALLGRAQVVELLQQELTLAEQKNEALSHQLLQLEAENGTLKNTIETERQESKILMEKVELEVAERKLSFHNQQEEMHQLQGKLEQASQAQAELETQYSALEQRHRAEMEEKDAYILSLQKTEQELQSACDALKEENSELLREKSEQAAESARAIEQLEDQLQQKSKEIRQFVDIPNLQKHETASQTSLPDVYNEGTQAVTEENITSLQKRVMELEDEKRALLLCTVELEELKAENEKLSSQITLLETKNRSGETDGAVCEVPDVTQFSKSDSLTKKSGQDDPENTFSQKHKELSVLLVEMTEAQEEIAFLKSQLQGKRSDGNSEVLDQKEVKVLESEGPLSVTAGDSPFMLNEESSVPAAEKEEQDSTKDQPPPSEAGSPNEAAVDLKSSSVPDACQCHQSELESLKTQIFKLETSLHKAEEIHEKNLDEKDKEISSLTELIDELKKKAEDAHSTLTVLSEERDQLLSRIKELDVLAELRAQVQELQSSLAEAEKQRGLDYESQKTQHNLLTEQIHSLSIEAKSKDVKIEALQKELDDVQIQCSQQDTQIKSLQSQLQKKESEVIERAEHVKNISEKVEELSQALSQKELEVARMDQLLVEKKKDVETLQQTIQEKDQQVTELSFSMTEKMVQLNEEKFSLGVEIKTLKEQLNVLSRAEEAKKEQVEESHGVISNHSHDESSPVGLLSKEALQQELELLRKESELRKRKLHAALIHRKELLQKVGTLEEELAKAKEECRKEIAHGESEKRKLEPYRENKDDPEKCETSKCREIEVSLKQTISEKEVELQHIKRDLKERMAAEEELQAVVQQMNQNLQDKTKQIDLLQVEISENQATIQKLTTGAKDAGDSAAPVKETHVSSPPSAGSGEHWTADLEGKTSDLEKEKEQLQKKLQEALTSRKVILKKAQEREKHLKEELGKQKDAYSLLQEQFDKQSKEIENMGNQLRQLQIEARESSDSKLPGTNQWEPGLPIQGFEEVSLEDTEQQPAQPAAEFDLHITQPSCPGDAEALQATVSVAQIKAQLIEMEVEKEELELKVSSTASELTKKSEEVFLLQEQISKQGLEIQTWKTASHEAEAHAEILQHELESSKLKLAGLEHLKTLQHELDELQKHMAQKEEEVSYLSGQLSEKEETLTKVQAEMLEQEHLIKALHTQMDMHAKDYEERLKQSQLELCQLKQKSEQVEDETKAKQQIHRKLQAALISRKEALKENKTLQEELSSARDAVEHLTKSLADVESQISVQNKEKDAFLRKLALLQEERDKLIVEVDRSLLENQSLGGSCESLKLALEGLTEDKEKLMKELESLRCSKMAEITEWQEKHKELQKEYEVLLQSYENVSNEAERIQHVVESVRQEKQELYGKLRSIETDKKETEKQLQDAEHEMEEMKEKMRKFAKSKQQKILELEEENDRLRAEAQPIGGAKESMEALLSSNSSLKEELERVKLEYKTLSKEFEALMAEKDILSEEIQGLKHQVEDGILKQASLEATEKSNEQKEETQAMVGKSQEQDSQSGSVKVEVPEGILSVTSAKPGISETFRSHDDINNYLQQLDQLNGRIAELEMEKQCDRELNRTLENEKNALLSQISAKDGELKLLEEEVAKINTLNQQIQEELSRVTKLKEMAEEEKDDLEERLMNQLAELNGSIGNYYQDVTDAQIKNEQLESEMQNLKKCMSELEEEKQQLVKEKTKVETEIRKEYLEKIQGAQKGAGNKSHAKELQELLKEKQQEVKQLQKDCIRYQEKISALEKTVKALEYVQTESQKDLDVTKGNLAQAVEHHKQAQEELSSFKVLLDDTQSEAARVLADNLRLKKELQSNKEAIKNQMKQKDEDLVRRLEQAEEKFLKEKINMQEKLDALHGEKTRVEDTLAEIQVTVAKKDKEMKQLQESLDSTMAQLAAFTKSMSSLQDDRDRVIDEAKKWEQKFGDAIQTKEKEIRLKEENCMALKDQLHQMSIHTEELKTNISRLEHDKEIWGSKAQTELQHQQKVCDTLQGENKELVSQLEETRQLYHNSMNEVAKLESELKDLKDQSSDLNNSLEKCKDHKEKLEGIIKQQEAEIQNCKFSYEQLETDLKASRELTGRLHDEIHMKEQKIVSLLSGKEEAVQVAVAELCQQHNKEIKELEHLLSQEEEENATLEEDNKKAVEKTNQLMETLENIRKENLEQKAQLNSFFKSMASLQDDRDRIISDYQQLEDRHLSVILEKDQLIQEAAAENNKLKEEIRGLRSHMDDLNSENAKLDAELIQYRQDLNEVIVIKDCQQKQLLDVQLLKNKELKNECAKLEEKLKGSEEARQSLQRSSDALQGDKQCLSTELESLKRQVAALQEEGTLGAQLKDKEEEVQRLNAALSSSQKRAAELEEELVCVQKEATRKVSEIEDKLKKELKHLHHDAGIMRNETETAEERVAELARDLVEMEQKLLMVTKENKDLMAQIQSFGRSMSSLQDSRDHATEELGDLKKKYEAVLKELTQLKEHKELRRESDVLSQAAFPLTTTENSLSHLEKLNQQLISKDEQLLHLSSQLEDCHNKVQSFSKAMTSLQTERDHLWSELEKFRKLEEGKQRAAAPSSPSSPAEMQSLKKAMSSLQNDRDRLLKELKNLQQQYLQMNQEVTNLRPLKAQLQEYQEQTKTLQMMKEKLRQENLNWQQELHQLRMEKDAWELHERQMKEQYIMAVSDKDQQLNHLQSLLRASSQTEILSTQSQRQVSLETSASLDGSQNLIHEAETLRTQLNDTLKENHQKELRIQQLNMRLSQLLEEKNILSIQLSDANQSLRENQHHYGDLFRHCAVLERQVHQLQARGPTNVDVAPGAPQEMSEVCRNSDPEATVEPQPSLAEVCSAQQELGELKKLLEEERDQRLTAENALSLAEEQIRRLQEHSEWDSARTPIIGACGSHETAVLIDLPGSTCRRTRSGAGWKRVLRSLCHSRTRVPLLAAMYLLMVHVLLILCFTGHL", "length": 3710, "header": "tr|A0A9J7FUK8-1|A0A9J7JGC2_CRIGR Computationally mapped isoform of Golgin subfamily B member 1 isoform X11 OS=Cricetulus griseus OX=10029 GN=Golgb1 PE=4 SV=1 CANONICAL=A0A9J7JGC2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FUW8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGC2/entry#A0A9J7FUW8-1", "sequence": { "sequence": "MLSRLSGLANIVIHELSGNNYGQNMTAPLEAASDMELDNSIQEDILQRLADSEKLVVELKDIIKQKDVQLQQKDEVLQEERKAADIKIKKIKLHAKAKFTALNKHVEELKAQGGTASPTEQQAEEQPSKLDKSSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELIKTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEEFILMKQQLQKKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSKTQAEQAAQLDKSSAEMEKFVLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMLQEKKELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMLQEKKELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLSSMQQVVREKDARFETQVRLHEDELLQLVTQSDVETEMQQKLRVMQRKLEEHEEALLGRAQVVELLQQELTLAEQKNEALSHQLLQLEAENGTLKNTIETERQESKILMEKVELEVAERKLSFHNQQEEMHQLQGKLEQASQAQAELETQYSALEQRHRAEMEEKDAYILSLQKTEQELQSACDALKEENSELLREKSEQAAESARAIEQLEDQLQQKSKEIRQFVDIPNLQKHETASQTSLPDVYNEGTQAVTEENITSLQKRVMELEDEKRALLLCTVELEELKAENEKLSSQITLLETKNRSGETDGAVCEVPDVTQFSKSDSLTKKSGQDDPENTFSQKHKELSVLLVEMTEAQEEIAFLKSQLQGKRSDGNSEVLDQKEVKVLESEGPLSVTAGDSPFMLNEESSVPAAEKEEQDSTKDQPPPSEAGSPNEAAVDLKSSSVPDACQCHQSELESLKTQIFKLETSLHKAEEIHEKNLDEKDKEISSLTELIDELKKKAEDAHSTLTVLSEERDQLLSRIKELDVLAELRAQVQELQSSLAEAEKQRGLDYESQKTQHNLLTEQIHSLSIEAKSKDVKIEALQKELDDVQIQCSQQDTQIKSLQSQLQKKESEVIERAEHVKNISEKVEELSQALSQKELEVARMDQLLVEKKKDVETLQQTIQEKDQQVTELSFSMTEKMVQLNEEKFSLGVEIKTLKEQLNVLSRAEEAKKEQVEESHGVISNHSHDESSPVGLLSKEALQQELELLRKESELRKRKLHAALIHRKELLQKVGTLEEELAKAKEECRKEIAHGESEKRKLEPYRENKDDPEKCETSKCREIEVSLKQTISEKEVELQHIKRDLKERMAAEEELQAVVQQMNQNLQDKTKQIDLLQVEISENQATIQKLTTGAKDAGDSAAPVKETHVSSPPSAGSGEHWTADLEGKTSDLEKEKEQLQKKLQEALTSRKVILKKAQEREKHLKEELGKQKDAYSLLQEQFDKQSKEIENMGNQLRQLQIEARESSDSKLPGTNQWEPGLPIQGFEEVSLEDTEQQPAQPAAEFDLHITQPSCPGDAEALQATVSVAQIKAQLIEMEVEKEELELKVSSTASELTKKSEEVFLLQEQISKQGLEIQTWKTASHEAEAHAEILQHELESSKLKLAGLEHLKTLQHELDELQKHMAQKEEEVSYLSGQLSEKEETLTKVQAEMLEQEHLIKALHTQMDMHAKDYEERLKQSQLELCQLKQKSEQVEDETKAKQQIHRKLQAALISRKEALKENKTLQEELSSARDAVEHLTKSLADVESQISVQNKEKDAFLRKLALLQEERDKLIVEVDRSLLENQSLGGSCESLKLALEGLTEDKEKLMKELESLRCSKMAEITEWQEKHKELQKEYEVLLQSYENVSNEAERIQHVVESVRQEKQELYGKLRSIETDKKETEKQLQDAEHEMEEMKEKMRKFAKSKQQKILELEEENDRLRAEAQPIGGAKESMEALLSSNSSLKEELERVKLEYKTLSKEFEALMAEKDILSEEIQGLKHQVEDGILKQASLEATEKSNEQKEETQAMVGKSQEQDSQSGSVKVEVPEGILSVTSAKPGISETFRSHDDINNYLQQLDQLNGRIAELEMEKQCDRELNRTLENEKNALLSQISAKDGELKLLEEEVAKINTLNQQIQEELSRVTKLKEMAEEEKDDLEERLMNQLAELNGSIGNYYQDVTDAQIKNEQLESEMQNLKKCMSELEEEKQQLVKEKTKVETEIRKEYLEKIQGAQKGAGNKSHAKELQELLKEKQQEVKQLQKDCIRYQEKISALEKTVKALEYVQTESQKDLDVTKGNLAQAVEHHKQAQEELSSFKVLLDDTQSEAARVLADNLRLKKELQSNKEAIKNQMKQKDEDLVRRLEQAEEKFLKEKINMQEKLDALHGEKTRVEDTLAEIQVTVAKKDKEMKQLQESLDSTMAQLAAFTKSMSSLQDDRDRVIDEAKKWEQKFGDAIQTKEKEIRLKEENCMALKDQLHQMSIHTEELKTNISRLEHDKEIWGSKAQTELQHQQKVCDTLQGENKELVSQLEETRQLYHNSMNEVAKLESELKDLKDQSSDLNNSLEKCKDHKEKLEGIIKQQEAEIQNCKFSYEQLETDLKASRELTGRLHDEIHMKEQKIVSLLSGKEEAVQVAVAELCQQHNKEIKELEHLLSQEEEENATLEEDNKKAVEKTNQLMETLENIRKENLEQKAQLNSFFKSMASLQDDRDRIISDYQQLEDRHLSVILEKDQLIQEAAAENNKLKEEIRGLRSHMDDLNSENAKLDAELIQYRQDLNEVIVIKDCQQKQLLDVQLLKNKELKNECAKLEEKLKGSEEARQSLQRSSDALQGDKQCLSTELESLKRQVAALQEEGTLGAQLKDKEEEVQRLNAALSSSQKRAAELEEELVCVQKEATRKVSEIEDKLKKELKHLHHDAGIMRNETETAEERVAELARDLVEMEQKLLMVTKENKDLMAQIQSFGRSMSSLQDSRDHATEELGDLKKKYEAVLKELTQLKEHKELRRESDVLSQAAFPLTTTENSLSHLEKLNQQLISKDEQLLHLSSQLEDCHNKVQSFSKAMTSLQTERDHLWSELEKFRKLEEGKQRAAAPSSPSSPAEMQSLKKAMSSLQNDRDRLLKELKNLQQQYLQMNQEVTNLRPLKAQLQEYQEQTKTLQMMKEKLRQENLNWQQELHQLRMEKDAWELHERQMKEQYIMAVSDKDQQLNHLQSLLRASSQTEILSTQSQRQVSLETSASLDGSQNLIHEAETLRTQLNDTLKENHQKELRIQQLNMRLSQLLEEKNILSIQLSDANQSLRENQHHYGDLFRHCAVLERQVHQLQARGPTNVDVAPGAPQEMSEVCRNSDPEATVEPQPSLAEVCSAQQELGELKKLLEEERDQRLTAENALSLAEEQIRRLQEHSEWDSARTPIIGACGSHETAVLIDLPGSTCRRTRSGAGWKRVLRSLCHSRTRVPLLAAMYLLMVHVLLILCFTGHL", "length": 3824, "header": "tr|A0A9J7FUW8-1|A0A9J7JGC2_CRIGR Computationally mapped isoform of Golgin subfamily B member 1 isoform X11 OS=Cricetulus griseus OX=10029 GN=Golgb1 PE=4 SV=1 CANONICAL=A0A9J7JGC2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FVT1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGC2/entry#A0A9J7FVT1-1", "sequence": { "sequence": "MLSRLSGLANIVIHELSGNNYGQNMTAPLEAASDMELDNSIQEDILQRLADSEKLVVELKDIIKQKDVQLQQKDEVLQEERKAADIKIKKIKLHAKAKFTALNKHVEELKAQGGTASPTEQQAEEQPSKLDKSSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELIKTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEEFILMKQQLQKKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSKTQAEQAAQLDKSSAEMEKFVLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMLQEKKELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLSSMQQVVREKDARFETQVRLHEDELLQLVTQSDVETEMQQKLRVMQRKLEEHEEALLGRAQVVELLQQELTLAEQKNEALSHQLLQLEAENGTLKNTIETERQESKILMEKVELEVAERKLSFHNQQEEMHQLQGKLEQASQAQAELETQYSALEQRHRAEMEEKDAYILSLQKTEQELQSACDALKEENSELLREKSEQAAESARAIEQLEDQLQQKSKEIRQFVDIPNLQKHETASQTSLPDVYNEGTQAVTEENITSLQKRVMELEDEKRALLLCTVELEELKAENEKLSSQITLLETKNRSGETDGAVCEVPDVTQFSKSDSLTKKSGQDDPENTFSQKHKELSVLLVEMTEAQEEIAFLKSQLQGKRSDGNSEVLDQKEVKVLESEGPLSVTAGDSPFMLNEESSVPAAEKEEQDSTKDQPPPSEAGSPNEAAVDLKSSSVPDACQCHQSELESLKTQIFKLETSLHKAEEIHEKNLDEKDKEISSLTELIDELKKKAEDAHSTLTVLSEERDQLLSRIKELDVLAELRAQVQELQSSLAEAEKQRGLDYESQKTQHNLLTEQIHSLSIEAKSKDVKIEALQKELDDVQIQCSQQDTQIKSLQSQLQKKESEVIERAEHVKNISEKVEELSQALSQKELEVARMDQLLVEKKKDVETLQQTIQEKDQQVTELSFSMTEKMVQLNEEKFSLGVEIKTLKEQLNVLSRAEEAKKEQVEESHGVISNHSHDESSPVGLLSKEALQQELELLRKESELRKRKLHAALIHRKELLQKVGTLEEELAKAKEECRKEIAHGESEKRKLEPYRENKDDPEKCETSKCREIEVSLKQTISEKEVELQHIKRDLKERMAAEEELQAVVQQMNQNLQDKTKQIDLLQVEISENQATIQKLTTGAKDAGDSAAPVKETHVSSPPSAGSGEHWTADLEGKTSDLEKEKEQLQKKLQEALTSRKVILKKAQEREKHLKEELGKQKDAYSLLQEQFDKQSKEIENMGNQLRQLQIEARESSDSKLPGTNQWEPGLPIQGFEEVSLEDTEQQPAQPAAEFDLHITQPSCPGDAEALQATVSVAQIKAQLIEMEVEKEELELKVSSTASELTKKSEEVFLLQEQISKQGLEIQTWKTASHEAEAHAEILQHELESSKLKLAGLEHLKTLQHELDELQKHMAQKEEEVSYLSGQLSEKEETLTKVQAEMLEQEHLIKALHTQMDMHAKDYEERLKQSQLELCQLKQKSEQVEDETKAKQQIHRKLQAALISRKEALKENKTLQEELSSARDAVEHLTKSLADVESQISVQNKEKDAFLRKLALLQEERDKLIVEVDRSLLENQSLGGSCESLKLALEGLTEDKEKLMKELESLRCSKMAEITEWQEKHKELQKEYEVLLQSYENVSNEAERIQHVVESVRQEKQELYGKLRSIETDKKETEKQLQDAEHEMEEMKEKMRKFAKSKQQKILELEEENDRLRAEAQPIGGAKESMEALLSSNSSLKEELERVKLEYKTLSKEFEALMAEKDILSEEIQGLKHQVEDGILKQASLEATEKSNEQKEETQAMVGKSQEQDSQSGSVKVEVPEGILSVTSAKPGISETFRSHDDINNYLQQLDQLNGRIAELEMEKQCDRELNRTLENEKNALLSQISAKDGELKLLEEEVAKINTLNQQIQEELSRVTKLKEMAEEEKDDLEERLMNQLAELNGSIGNYYQDVTDAQIKNEQLESEMQNLKKCMSELEEEKQQLVKEKTKVETEIRKEYLEKIQGAQKGAGNKSHAKELQELLKEKQQEVKQLQKDCIRYQEKISALEKTVKALEYVQTESQKDLDVTKGNLAQAVEHHKQAQEELSSFKVLLDDTQSEAARVLADNLRLKKELQSNKEAIKNQMKQKDEDLVRRLEQAEEKFLKEKINMQEKLDALHGEKTRVEDTLAEIQVTVAKKDKEMKQLQESLDSTMAQLAAFTKSMSSLQDDRDRVIDEAKKWEQKFGDAIQTKEKEIRLKEENCMALKDQLHQMSIHTEELKTNISRLEHDKEIWGSKAQTELQHQQKVCDTLQGENKELVSQLEETRQLYHNSMNEVAKLESELKDLKDQSSDLNNSLEKCKDHKEKLEGIIKQQEAEIQNCKFSYEQLETDLKASRELTGRLHDEIHMKEQKIVSLLSGKEEAVQVAVAELCQQHNKEIKELEHLLSQEEEENATLEEDNKKAVEKTNQLMETLENIRKENLEQKAQLNSFFKSMASLQDDRDRIISDYQQLEDRHLSVILEKDQLIQEAAAENNKLKEEIRGLRSHMDDLNSENAKLDAELIQYRQDLNEVIVIKDCQQKQLLDVQLLKNKELKNECAKLEEKLKGSEEARQSLQRSSDALQGDKQCLSTELESLKRQVAALQEEGTLGAQLKDKEEEVQRLNAALSSSQKRAAELEEELVCVQKEATRKVSEIEDKLKKELKHLHHDAGIMRNETETAEERVAELARDLVEMEQKLLMVTKENKDLMAQIQSFGRSMSSLQDSRDHATEELGDLKKKYEAVLKELTQLKEHKELRRESDVLSQAAFPLTTTENSLSHLEKLNQQLISKDEQLLHLSSQLEDCHNKVQSFSKAMTSLQTERDHLWSELEKFRKLEEGKQRAAAPSSPSSPAEMQSLKKAMSSLQNDRDRLLKELKNLQQQYLQMNQEVTNLRPLKAQLQEYQEQTKTLQMMKEKLRQENLNWQQELHQLRMEKDAWELHERQMKEQYIMAVSDKDQQLNHLQSLLRASSQTEILSTQSQRQVSLETSASLDGSQNLIHEAETLRTQLNDTLKENHQKELRIQQLNMRLSQLLEEKNILSIQLSDANQSLRENQHHYGDLFRHCAVLERQVHQLQARGPTNVDVAPGAPQEMSEVCRNSDPEATVEPQPSLAEVCSAQQELGELKKLLEEERDQRLTAENALSLAEEQIRRLQEHSEWDSARTPIIGACGSHETAVLIDLPGSTCRRTRSGAGWKRVLRSLCHSRTRVPLLAAMYLLMVHVLLILCFTGHL", "length": 3827, "header": "tr|A0A9J7FVT1-1|A0A9J7JGC2_CRIGR Computationally mapped isoform of Golgin subfamily B member 1 isoform X11 OS=Cricetulus griseus OX=10029 GN=Golgb1 PE=4 SV=1 CANONICAL=A0A9J7JGC2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FVU1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGC2/entry#A0A9J7FVU1-1", "sequence": { "sequence": "MLSRLSGLANIVIHELSGNNYGQNMTAPLEAASDMELDNSIQEDILQRLADSEKLVVELKDIIKQKDVQLQQKDEVLQEERKAADIKIKKIKLHAKAKFTALNKHVEELKAQGGTASPTEQQAEEQPSKLDKSSAEMEKFVLMLQEKKELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMLQEKKELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLSSMQQVVREKDARFETQVRLHEDELLQLVTQSDVETEMQQKLRVMQRKLEEHEEALLGRAQVVELLQQELTLAEQKNEALSHQLLQLEAENGTLKNTIETERQESKILMEKVELEVAERKLSFHNQQEEMHQLQGKLEQASQAQAELETQYSALEQRHRAEMEEKDAYILSLQKTEQELQSACDALKEENSELLREKSEQAAESARAIEQLEDQLQQKSKEIRQFVDIPNLQKHETASQTSLPDVYNEGTQAVTEENITSLQKRVMELEDEKRALLLCTVELEELKAENEKLSSQITLLETKNRSGETDGAVCEVPDVTQFSKSDSLTKKSGQDDPENTFSQKHKELSVLLVEMTEAQEEIAFLKSQLQGKRSDGNSEVLDQKEVKVLESEGPLSVTAGDSPFMLNEESSVPAAEKEEQDSTKDQPPPSEAGSPNEAAVDLKSSSVPDACQCHQSELESLKTQIFKLETSLHKAEEIHEKNLDEKDKEISSLTELIDELKKKAEDAHSTLTVLSEERDQLLSRIKELDVLAELRAQVQELQSSLAEAEKQRGLDYESQKTQHNLLTEQIHSLSIEAKSKDVKIEALQKELDDVQIQCSQQDTQIKSLQSQLQKKESEVIERAEHVKNISEKVEELSQALSQKELEVARMDQLLVEKKKDVETLQQTIQEKDQQVTELSFSMTEKMVQLNEEKFSLGVEIKTLKEQLNVLSRAEEAKKEQVEESHGVISNHSHDESSPVGLLSKEALQQELELLRKESELRKRKLHAALIHRKELLQKVGTLEEELAKAKEECRKEIAHGESEKRKLEPYRENKDDPEKCETSKCREIEVSLKQTISEKEVELQHIKRDLKERMAAEEELQAVVQQMNQNLQDKTKQIDLLQVEISENQATIQKLTTGAKDAGDSAAPVKETHVSSPPSAGSGEHWTADLEGKTSDLEKEKEQLQKKLQEALTSRKVILKKAQEREKHLKEELGKQKDAYSLLQEQFDKQSKEIENMGNQLRQLQIEARESSDSKLPGTNQWEPGLPIQGFEEVSLEDTEQQPAQPAAEFDLHITQPSCPGDAEALQATVSVAQIKAQLIEMEVEKEELELKVSSTASELTKKSEEVFLLQEQISKQGLEIQTWKTASHEAEAHAEILQHELESSKLKLAGLEHLKTLQHELDELQKHMAQKEEEVSYLSGQLSEKEETLTKVQAEMLEQEHLIKALHTQMDMHAKDYEERLKQSQLELCQLKQKSEQVEDETKAKQQIHRKLQAALISRKEALKENKTLQEELSSARDAVEHLTKSLADVESQISVQNKEKDAFLRKLALLQEERDKLIVEVDRSLLENQSLGGSCESLKLALEGLTEDKEKLMKELESLRCSKMAEITEWQEKHKELQKEYEVLLQSYENVSNEAERIQHVVESVRQEKQELYGKLRSIETDKKETEKQLQDAEHEMEEMKEKMRKFAKSKQQKILELEEENDRLRAEAQPIGGAKESMEALLSSNSSLKEELERVKLEYKTLSKEFEALMAEKDILSEEIQGLKHQVEDGILKQASLEATEKSNEQKEETQAMVGKSQEQDSQSGSVKVEVPEGILSVTSAKPGISETFRSHDDINNYLQQLDQLNGRIAELEMEKQCDRELNRTLENEKNALLSQISAKDGELKLLEEEVAKINTLNQQIQEELSRVTKLKEMAEEEKDDLEERLMNQLAELNGSIGNYYQDVTDAQIKNEQLESEMQNLKKCMSELEEEKQQLVKEKTKVETEIRKEYLEKIQGAQKGAGNKSHAKELQELLKEKQQEVKQLQKDCIRYQEKISALEKTVKALEYVQTESQKDLDVTKGNLAQAVEHHKQAQEELSSFKVLLDDTQSEAARVLADNLRLKKELQSNKEAIKNQMKQKDEDLVRRLEQAEEKFLKEKINMQEKLDALHGEKTRVEDTLAEIQVTVAKKDKEMKQLQESLDSTMAQLAAFTKSMSSLQDDRDRVIDEAKKWEQKFGDAIQTKEKEIRLKEENCMALKDQLHQMSIHTEELKTNISRLEHDKEIWGSKAQTELQHQQKVCDTLQGENKELVSQLEETRQLYHNSMNEVAKLESELKDLKDQSSDLNNSLEKCKDHKEKLEGIIKQQEAEIQNCKFSYEQLETDLKASRELTGRLHDEIHMKEQKIVSLLSGKEEAVQVAVAELCQQHNKEIKELEHLLSQEEEENATLEEDNKKAVEKTNQLMETLENIRKENLEQKAQLNSFFKSMASLQDDRDRIISDYQQLEDRHLSVILEKDQLIQEAAAENNKLKEEIRGLRSHMDDLNSENAKLDAELIQYRQDLNEVIVIKDCQQKQLLDVQLLKNKELKNECAKLEEKLKGSEEARQSLQRSSDALQGDKQCLSTELESLKRQVAALQEEGTLGAQLKDKEEEVQRLNAALSSSQKRAAELEEELVCVQKEATRKVSEIEDKLKKELKHLHHDAGIMRNETETAEERVAELARDLVEMEQKLLMVTKENKDLMAQIQSFGRSMSSLQDSRDHATEELGDLKKKYEAVLKELTQLKEHKELRRESDVLSQAAFPLTTTENSLSHLEKLNQQLISKDEQLLHLSSQLEDCHNKVQSFSKAMTSLQTERDHLWSELEKFRKLEEGKQRAAAPSSPSSPAEMQSLKKAMSSLQNDRDRLLKELKNLQQQYLQMNQEVTNLRPLKAQLQEYQEQTKTLQMMKEKLRQENLNWQQELHQLRMEKDAWELHERQMKEQYIMAVSDKDQQLNHLQSLLRASSQTEILSTQSQRQVSLETSASLDGSQNLIHEAETLRTQLNDTLKENHQKELRIQQLNMRLSQLLEEKNILSIQLSDANQSLRENQHHYGDLFRHCAVLERQVHQLQARGPTNVDVAPGAPQEMSEVCRNSDPEATVEPQPSLAEVCSAQQELGELKKLLEEERDQRLTAENALSLAEEQIRRLQEHSEWDSARTPIIGACGSHETAVLIDLPGSTCRRTRSGAGWKRVLRSLCHSRTRVPLLAAMYLLMVHVLLILCFTGHL", "length": 3452, "header": "tr|A0A9J7FVU1-1|A0A9J7JGC2_CRIGR Computationally mapped isoform of Golgin subfamily B member 1 isoform X11 OS=Cricetulus griseus OX=10029 GN=Golgb1 PE=4 SV=1 CANONICAL=A0A9J7JGC2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FWN8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGC2/entry#A0A9J7FWN8-1", "sequence": { "sequence": "MLSRLSGLANIVIHELSGNNYGQNMTAPLEAASDMELDNSIQEDILQRLADSEKLVVELKDIIKQKDVQLQQKDEVLQEERKAADIKIKKIKLHAKAKFTALNKHVEELKAQGGTASPTEQQAEEQPSKLDKSSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELIKTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSKTQAEQAAQLDKSSAEMEKFVLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMLQEKKELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMLQEKKELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLSSMQQVVREKDARFETQVRLHEDELLQLVTQSDVETEMQQKLRVMQRKLEEHEEALLGRAQVVELLQQELTLAEQKNEALSHQLLQLEAENGTLKNTIETERQESKILMEKVELEVAERKLSFHNQQEEMHQLQGKLEQASQAQAELETQYSALEQRHRAEMEEKDAYILSLQKTEQELQSACDALKEENSELLREKSEQAAESARAIEQLEDQLQQKSKEIRQFVDIPNLQKHETASQTSLPDVYNEGTQAVTEENITSLQKRVMELEDEKRALLLCTVELEELKAENEKLSSQITLLETKNRSGETDGAVCEVPDVTQFSKSDSLTKKSGQDDPENTFSQKHKELSVLLVEMTEAQEEIAFLKSQLQGKRSDGNSEVLDQKEVKVLESEGPLSVTAGDSPFMLNEESSVPAAEKEEQDSTKDQPPPSEAGSPNEAAVDLKSSSVPDACQCHQSELESLKTQIFKLETSLHKAEEIHEKNLDEKDKEISSLTELIDELKKKAEDAHSTLTVLSEERDQLLSRIKELDVLAELRAQVQELQSSLAEAEKQRGLDYESQKTQHNLLTEQIHSLSIEAKSKDVKIEALQKELDDVQIQCSQQDTQIKSLQSQLQKKESEVIERAEHVKNISEKVEELSQALSQKELEVARMDQLLVEKKKDVETLQQTIQEKDQQVTELSFSMTEKMVQLNEEKFSLGVEIKTLKEQLNVLSRAEEAKKEQVEESHGVISNHSHDESSPVGLLSKEALQQELELLRKESELRKRKLHAALIHRKELLQKVGTLEEELAKAKEECRKEIAHGESEKRKLEPYRENKDDPEKCETSKCREIEVSLKQTISEKEVELQHIKRDLKERMAAEEELQAVVQQMNQNLQDKTKQIDLLQVEISENQATIQKLTTGAKDAGDSAAPVKETHVSSPPSAGSGEHWTADLEGKTSDLEKEKEQLQKKLQEALTSRKVILKKAQEREKHLKEELGKQKDAYSLLQEQFDKQSKEIENMGNQLRQLQIEARESSDSKLPGTNQWEPGLPIQGFEEVSLEDTEQQPAQPAAEFDLHITQPSCPGDAEALQATVSVAQIKAQLIEMEVEKEELELKVSSTASELTKKSEEVFLLQEQISKQGLEIQTWKTASHEAEAHAEILQHELESSKLKLAGLEHLKTLQHELDELQKHMAQKEEEVSYLSGQLSEKEETLTKVQAEMLEQEHLIKALHTQMDMHAKDYEERLKQSQLELCQLKQKSEQVEDETKAKQQIHRKLQAALISRKEALKENKTLQEELSSARDAVEHLTKSLADVESQISVQNKEKDAFLRKLALLQEERDKLIVEVDRSLLENQSLGGSCESLKLALEGLTEDKEKLMKELESLRCSKMAEITEWQEKHKELQKEYEVLLQSYENVSNEAERIQHVVESVRQEKQELYGKLRSIETDKKETEKQLQDAEHEMEEMKEKMRKFAKSKQQKILELEEENDRLRAEAQPIGGAKESMEALLSSNSSLKEELERVKLEYKTLSKEFEALMAEKDILSEEIQGLKHQVEDGILKQASLEATEKSNEQKEETQAMVGKSQEQDSQSGSVKVEVPEGILSVTSAKPGISETFRSHDDINNYLQQLDQLNGRIAELEMEKQCDRELNRTLENEKNALLSQISAKDGELKLLEEEVAKINTLNQQIQEELSRVTKLKEMAEEEKDDLEERLMNQLAELNGSIGNYYQDVTDAQIKNEQLESEMQNLKKCMSELEEEKQQLVKEKTKVETEIRKEYLEKIQGAQKGAGNKSHAKELQELLKEKQQEVKQLQKDCIRYQEKISALEKTVKALEYVQTESQKDLDVTKGNLAQAVEHHKQAQEELSSFKVLLDDTQSEAARVLADNLRLKKELQSNKEAIKNQMKQKDEDLVRRLEQAEEKFLKEKINMQEKLDALHGEKTRVEDTLAEIQVTVAKKDKEMKQLQESLDSTMAQLAAFTKSMSSLQDDRDRVIDEAKKWEQKFGDAIQTKEKEIRLKEENCMALKDQLHQMSIHTEELKTNISRLEHDKEIWGSKAQTELQHQQKVCDTLQGENKELVSQLEETRQLYHNSMNEVAKLESELKDLKDQSSDLNNSLEKCKDHKEKLEGIIKQQEAEIQNCKFSYEQLETDLKASRELTGRLHDEIHMKEQKIVSLLSGKEEAVQVAVAELCQQHNKEIKELEHLLSQEEEENATLEEDNKKAVEKTNQLMETLENIRKENLEQKAQLNSFFKSMASLQDDRDRIISDYQQLEDRHLSVILEKDQLIQEAAAENNKLKEEIRGLRSHMDDLNSENAKLDAELIQYRQDLNEVIVIKDCQQKQLLDVQLLKNKELKNECAKLEEKLKGSEEARQSLQRSSDALQGDKQCLSTELESLKRQVAALQEEGTLGAQLKDKEEEVQRLNAALSSSQKRAAELEEELVCVQKEATRKVSEIEDKLKKELKHLHHDAGIMRNETETAEERVAELARDLVEMEQKLLMVTKENKDLMAQIQSFGRSMSSLQDSRDHATEELGDLKKKYEAVLKELTQLKEHKELRRESDVLSQAAFPLTTTENSLSHLEKLNQQLISKDEQLLHLSSQLEDCHNKVQSFSKAMTSLQTERDHLWSELEKFRKLEEGKQRAAAPSSPSSPAEMQSLKKAMSSLQNDRDRLLKELKNLQQQYLQMNQEVTNLRPLKAQLQEYQEQTKTLQMMKEKLRQENLNWQQELHQLRMEKDAWELHERQMKEQYIMAVSDKDQQLNHLQSLLRASSQTEILSTQSQRQVSLETSASLDGSQNLIHEAETLRTQLNDTLKENHQKELRIQQLNMRLSQLLEEKNILSIQLSDANQSLRENQHHYGDLFRHCAVLERQVHQLQARGPTNVDVAPGAPQEMSEVCRNSDPEATVEPQPSLAEVCSAQQELGELKKLLEEERDQRLTAENALSLAEEQIRRLQEHSEWDSARTPIIGACGSHETAVLIDLPGSTCRRTRSGAGWKRVLRSLCHSRTRVPLLAAMYLLMVHVLLILCFTGHL", "length": 3824, "header": "tr|A0A9J7FWN8-1|A0A9J7JGC2_CRIGR Computationally mapped isoform of Golgin subfamily B member 1 isoform X11 OS=Cricetulus griseus OX=10029 GN=Golgb1 PE=4 SV=1 CANONICAL=A0A9J7JGC2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FWW0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGC2/entry#A0A9J7FWW0-1", "sequence": { "sequence": "MLSRLSGLANIVIHELSGNNYGQNMTAPLEAASDMELDNSIQEDILQRLADSEKLVVELKDIIKQKDVQLQQKDEVLQEERKAADIKIKKIKLHAKAKFTALNKHVEELKAQGGTASPTEQQAEEQPSKLDKSSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELIKTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEEFILMKQQLQKKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSKTQAEQAAQLDKSSAEMEKFVLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMLQEKKELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMLQEKKELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLSSMQQVVREKDARFETQVRLHEDELLQLVTQSDVETEMQQKLRVMQRKLEEHEEALLGRAQVVELLQQELTLAEQKNEALSHQLLQLEAENGTLKNTIETERQESKILMEKVELEVAERKLSFHNQQEEMHQLQGKLEQASQAQAELETQYSALEQRHRAEMEEKDAYILSLQKTEQELQSACDALKEENSELLREKSEQAAESARAIEQLEDQLQQKSKEIRQFVDIPNLQKHETASQTSLPDVYNEGTQAVTEENITSLQKRVMELEDEKRALLLCTVELEELKAENEKLSSQITLLETKNRSGETDGAVCEVPDVTQFSKSDSLTKKSGQDDPENTFSQKHKELSVLLVEMTEAQEEIAFLKSQLQGKRSDGNSEVLDQKEVKVLESEGPLSVTAGDSPFMLNEESSVPAAEKEEQDSTKDQPPPSEAGSPNEAAVDLKSSSVPDACQCHQSELESLKTQIFKLETSLHKAEEIHEKNLDEKDKEISSLTELIDELKKKAEDAHSTLTVLSEERDQLLSRIKELDVLAELRAQVQELQSSLAEAEKQRGLDYESQKTQHNLLTEQIHSLSIEAKSKDVKIEALQKELDDVQIQCSQQDTQIKSLQSQLQKKESEVIERAEHVKNISEKVEELSQALSQKELEVARMDQLLVEKKKDVETLQQTIQEKDQQVTELSFSMTEKMVQLNEEKFSLGVEIKTLKEQLNVLSRAEEAKKEQVEESHGVISNHSHDESSPVGLLSKEALQQELELLRKESELRKRKLHAALIHRKELLQKVGTLEEELAKAKEECRKEIAHGESEKRKLEPYRENKDDPEKCETSKCREIEVSLKQTISEKEVELQHIKRDLKERMAAEEELQAVVQQMNQNLQDKTKQIDLLQVEISENQATIQKLTTGAKDAGDSAAPVKETHVSSPPSAGSGEHWTADLEGKTSDLEKEKEQLQKKLQEALTSRKVILKKAQEREKHLKEELGKQKDAYSLLQEQFDKQSKEIENMGNQLRQLQIEARESSDSKLPGTNQWEPGLPIQGFEEVSLEDTEQQPAQPAAEFDLHITQPSCPGDAEALQATVSVAQIKAQLIEMEVEKEELELKVSSTASELTKKSEEVFLLQEQISKQGLEIQTWKTASHEAEAHAEILQHELESSKLKLAGLEHLKTLQHELDELQKHMAQKEEEVSYLSGQLSEKEETLTKVQAEMLEQEHLIKALHTQMDMHAKDYEERLKQSQLELCQLKQKSEQVEDETKAKQQIHRKLQAALISRKEALKENKTLQEELSSARDAVEHLTKSLADVESQISVQNKEKDAFLRKLALLQEERDKLIVEVDRSLLENQSLGGSCESLKLALEGLTEDKEKLMKELESLRCSKMAEITEWQEKHKELQKEYEVLLQSYENVSNEAERIQHVVESVRQEKQELYGKLRSIETDKKETEKQLQDAEHEMEEMKEKMRKFAKSKQQKILELEEENDRLRAEAQPIGGAKESMEALLSSNSSLKEELERVKLEYKTLSKEFEALMAEKDILSEEIQGLKHQVEDGILKQASLEATEKSNEQKEETQAMVGKSQEQDSQSGSVKVEVPEGILSVTSAKPGISETFRSHDDINNYLQQLDQLNGRIAELEMEKQCDRELNRTLENEKNALLSQISAKDGELKLLEEEVAKINTLNQQIQEELSRVTKLKEMAEEEKDDLEERLMNQLAELNGSIGNYYQDVTDAQIKNEQLESEMQNLKKCMSELEEEKQQLVKEKTKVETEIRKEYLEKIQGAQKGAGNKSHAKELQELLKEKQQEVKQLQKDCIRYQEKISALEKTVKALEYVQTESQKDLDVTKGNLAQAVEHHKQAQEELSSFKVLLDDTQSEAARVLADNLRLKKELQSNKEAIKNQMKQKDEDLVRRLEQAEEKFLKEKINMQEKLDALHGEKTRVEDTLAEIQVTVAKKDKEMKQLQESLDSTMAQLAAFTKSMSSLQDDRDRVIDEAKKWEQKFGDAIQTKEKEIRLKEENCMALKDQLHQMSIHTEELKTNISRLEHDKEIWGSKAQTELQHQQKVCDTLQGENKELVSQLEETRQLYHNSMNEVAKLESELKDLKDQSSDLNNSLEKCKDHKEKLEGIIKQQEAEIQNCKFSYEQLETDLKASRELTGRLHDEIHMKEQKIVSLLSGKEEAVQVAVAELCQQHNKEIKELEHLLSQEEEENATLEEDNKKAVEKTNQLMETLENIRKENLEQKAQLNSFFKSMASLQDDRDRIISDYQQLEDRHLSVILEKDQLIQEAAAENNKLKEEIRGLRSHMDDLNSENAKLDAELIQYRQDLNEVIVIKDCQQKQLLDVQLLKNKELKNECAKLEEKLKGSEEARQSLQRSSDALQGDKQCLSTELESLKRQVAALQEEGTLGAQLKDKEEEVQRLNAALSSSQKRAAELEEELVCVQKEATRKVSEIEDKLKKELKHLHHDAGIMRNETETAEERVAELARDLVEMEQKLLMVTKENKDLMAQIQSFGRSMSSLQDSRDHATEELGDLKKKYEAVLKELTQLKEHKELRRESDVLSQAAFPLTTTENSLSHLEKLNQQLISKDEQLLHLSSQLEDCHNKVQSFSKAMTSLQTERDHLWSELEKFRKLEEGKQRAAAPSSPSSPAEMQSLKKAMSSLQNDRDRLLKELKNLQQQYLQMNQEVTNLRPLKAQLQEYQEQTKTLQMMKEKLRQENLNWQQELHQLRMEKDAWELHERQMKEQYIMAVSDKDQQLNHLQSLLRASSQTEILSTQSQRQVSLETSASLDGSQNLIHEAETLRTQLNDTLKENHQKELRIQQLNMRLSQLLEEKNILSIQLSDANQSLRENQHHYGDLFRHCAVLERQVHQLQARGPTNVDVAPGAPQEMSEVCRNSDPEATVEPQPSLAEVCSAQQELGELKKLLEEERDQRLTAENALSLAEEQIRRLQEHSEWDSARTPIIGACGSHETAVLIDLPGSTCRRTRSGAGWKRVLRSLCHSRTRVPLLAAMYLLMVHVLLILCFTGHL", "length": 3824, "header": "tr|A0A9J7FWW0-1|A0A9J7JGC2_CRIGR Computationally mapped isoform of Golgin subfamily B member 1 isoform X11 OS=Cricetulus griseus OX=10029 GN=Golgb1 PE=4 SV=1 CANONICAL=A0A9J7JGC2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FY00-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGC2/entry#A0A9J7FY00-1", "sequence": { "sequence": "MLSRLSGLANIVIHELSGNNYGQNMTAPLEAASDMELDNSIQEDILQRLADSEKLVVELKDIIKQKDVQLQQKDEVLQEERKAADIKIKKIKLHAKAKFTALNKHVEELKAQGGTASPTEQQAEEQPSKLDKSSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELIKTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEEFILMKQQLQKKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSKTQAEQAAQLDKSSAEMEKFVLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMLQEKKELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMLQEKKELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQKLRVMQRKLEEHEEALLGRAQVVELLQQELTLAEQKNEALSHQLLQLEAENGTLKNTIETERQESKILMEKVELEVAERKLSFHNQQEEMHQLQGKLEQASQAQAELETQYSALEQRHRAEMEEKDAYILSLQKTEQELQSACDALKEENSELLREKSEQAAESARAIEQLEDQLQQKSKEIRQFVDIPNLQKHETASQTSLPDVYNEGTQAVTEENITSLQKRVMELEDEKRALLLCTVELEELKAENEKLSSQITLLETKNRSGETDGAVCEVPDVTQFSKSDSLTKKSGQDDPENTFSQKHKELSVLLVEMTEAQEEIAFLKSQLQGKRSDGNSEVLDQKEVKVLESEGPLSVTAGDSPFMLNEESSVPAAEKEEQDSTKDQPPPSEAGSPNEAAVDLKSSSVPDACQCHQSELESLKTQIFKLETSLHKAEEIHEKNLDEKDKEISSLTELIDELKKKAEDAHSTLTVLSEERDQLLSRIKELDVLAELRAQVQELQSSLAEAEKQRGLDYESQKTQHNLLTEQIHSLSIEAKSKDVKIEALQKELDDVQIQCSQQDTQIKSLQSQLQKKESEVIERAEHVKNISEKVEELSQALSQKELEVARMDQLLVEKKKDVETLQQTIQEKDQQVTELSFSMTEKMVQLNEEKFSLGVEIKTLKEQLNVLSRAEEAKKEQVEESHGVISNHSHDESSPVGLLSKEALQQELELLRKESELRKRKLHAALIHRKELLQKVGTLEEELAKAKEECRKEIAHGESEKRKLEPYRENKDDPEKCETSKCREIEVSLKQTISEKEVELQHIKRDLKERMAAEEELQAVVQQMNQNLQDKTKQIDLLQVEISENQATIQKLTTGAKDAGDSAAPVKETHVSSPPSAGSGEHWTADLEGKTSDLEKEKEQLQKKLQEALTSRKVILKKAQEREKHLKEELGKQKDAYSLLQEQFDKQSKEIENMGNQLRQLQIEARESSDSKLPGTNQWEPGLPIQGFEEVSLEDTEQQPAQPAAEFDLHITQPSCPGDAEALQATVSVAQIKAQLIEMEVEKEELELKVSSTASELTKKSEEVFLLQEQISKQGLEIQTWKTASHEAEAHAEILQHELESSKLKLAGLEHLKTLQHELDELQKHMAQKEEEVSYLSGQLSEKEETLTKVQAEMLEQEHLIKALHTQMDMHAKDYEERLKQSQLELCQLKQKSEQVEDETKAKQQIHRKLQAALISRKEALKENKTLQEELSSARDAVEHLTKSLADVESQISVQNKEKDAFLRKLALLQEERDKLIVEVDRSLLENQSLGGSCESLKLALEGLTEDKEKLMKELESLRCSKMAEITEWQEKHKELQKEYEVLLQSYENVSNEAERIQHVVESVRQEKQELYGKLRSIETDKKETEKQLQDAEHEMEEMKEKMRKFAKSKQQKILELEEENDRLRAEAQPIGGAKESMEALLSSNSSLKEELERVKLEYKTLSKEFEALMAEKDILSEEIQGLKHQVEDGILKQASLEATEKSNEQKEETQAMVGKSQEQDSQSGSVKVEVPEGILSVTSAKPGISETFRSHDDINNYLQQLDQLNGRIAELEMEKQCDRELNRTLENEKNALLSQISAKDGELKLLEEEVAKINTLNQQIQEELSRVTKLKEMAEEEKDDLEERLMNQLAELNGSIGNYYQDVTDAQIKNEQLESEMQNLKKCMSELEEEKQQLVKEKTKVETEIRKEYLEKIQGAQKGAGNKSHAKELQELLKEKQQEVKQLQKDCIRYQEKISALEKTVKALEYVQTESQKDLDVTKGNLAQAVEHHKQAQEELSSFKVLLDDTQSEAARVLADNLRLKKELQSNKEAIKNQMKQKDEDLVRRLEQAEEKFLKEKINMQEKLDALHGEKTRVEDTLAEIQVTVAKKDKEMKQLQESLDSTMAQLAAFTKSMSSLQDDRDRVIDEAKKWEQKFGDAIQTKEKEIRLKEENCMALKDQLHQMSIHTEELKTNISRLEHDKEIWGSKAQTELQHQQKVCDTLQGENKELVSQLEETRQLYHNSMNEVAKLESELKDLKDQSSDLNNSLEKCKDHKEKLEGIIKQQEAEIQNCKFSYEQLETDLKASRELTGRLHDEIHMKEQKIVSLLSGKEEAVQVAVAELCQQHNKEIKELEHLLSQEEEENATLEEDNKKAVEKTNQLMETLENIRKENLEQKAQLNSFFKSMASLQDDRDRIISDYQQLEDRHLSVILEKDQLIQEAAAENNKLKEEIRGLRSHMDDLNSENAKLDAELIQYRQDLNEVIVIKDCQQKQLLDVQLLKNKELKNECAKLEEKLKGSEEARQSLQRSSDALQGDKQCLSTELESLKRQVAALQEEGTLGAQLKDKEEEVQRLNAALSSSQKRAAELEEELVCVQKEATRKVSEIEDKLKKELKHLHHDAGIMRNETETAEERVAELARDLVEMEQKLLMVTKENKDLMAQIQSFGRSMSSLQDSRDHATEELGDLKKKYEAVLKELTQLKEHKELRRESDVLSQAAFPLTTTENSLSHLEKLNQQLISKDEQLLHLSSQLEDCHNKVQSFSKAMTSLQTERDHLWSELEKFRKLEEGKQRAAAPSSPSSPAEMQSLKKAMSSLQNDRDRLLKELKNLQQQYLQMNQEVTNLRPLKAQLQEYQEQTKTLQMMKEKLRQENLNWQQELHQLRMEKDAWELHERQMKEQYIMAVSDKDQQLNHLQSLLRASSQTEILSTQSQRQVSLETSASLDGSQNLIHEAETLRTQLNDTLKENHQKELRIQQLNMRLSQLLEEKNILSIQLSDANQSLRENQHHYGDLFRHCAVLERQVHQLQARGPTNVDVAPGAPQEMSEVCRNSDPEATVEPQPSLAEVCSAQQELGELKKLLEEERDQRLTAENALSLAEEQIRRLQEHSEWDSARTPIIGACGSHETAVLIDLPGSTCRRTRSGAGWKRVLRSLCHSRTRVPLLAAMYLLMVHVLLILCFTGHL", "length": 3825, "header": "tr|A0A9J7FY00-1|A0A9J7JGC2_CRIGR Computationally mapped isoform of Golgin subfamily B member 1 isoform X11 OS=Cricetulus griseus OX=10029 GN=Golgb1 PE=4 SV=1 CANONICAL=A0A9J7JGC2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7FYZ2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGC2/entry#A0A9J7FYZ2-1", "sequence": { "sequence": "MLSRLSGLANIVIHELSGNNYGQNMTAPLEAASDMELDNSIQEDILQRLADSEKLVVELKDIIKQKDVQLQQKDEVLQEERKAADIKIKKIKLHAKAKFTALNKHVEELKAQGGTASPTEQQAEEQPSKLDKSSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELIKTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEEFILMKQQLQKKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSKTQAEQAAQLDKSSAEMEKFVLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMLQEKKELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMLQEKKELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLSSMQQVVREKDARFETQVRLHEDELLQLVTQSDVETEMQQKLRVMQRKLEEHEEALLGRAQVVELLQQELTLAEQKNEALSHQLLQLEAENGTLKNTIETERQESKILMEKVELEVAERKLSFHNQQEEMHQLQGKLEQASQAQAELETQYSALEQRHRAEMEEKDAYILSLQKTEQELQSACDALKEENSELLREKSEQAAESARAIEQLEDQLQQKSKEIRQFVDIPNLQKHETASQTSLPDVYNEGTQAVTEENITSLQKRVMELEDEKRALLLCTVELEELKAENEKLSSQITLLETKNRSGETDGAVCEVPDVTQFSKSDSLTKKSGQDDPENTFSQKHKELSVLLVEMTEAQEEIAFLKSQLQGKRSDGNSEVLDQKEVKVLESEGPLSVTAGDSPFMLNEESSVPAAEKEEQDSTKDQPPPSEAGSPNEAAVDLKSSSVPDACQCHQSELESLKTQIFKLETSLHKAEEIHEKNLDEKDKEISSLTELIDELKKKAEDAHSTLTVLSEERDQLLSRIKELDVLAELRAQVQELQSSLAEAEKQRGLDYESQKTQHNLLTEQIHSLSIEAKSKDVKIEALQKELDDVQIQCSQQDTQIKSLQSQLQKKESEVIERAEHVKNISEKVEELSQALSQKELEVARMDQLLVEKKKDVETLQQTIQEKDQQVTELSFSMTEKMVQLNEEKFSLGVEIKTLKEQLNVLSRAEEAKKEQVEESHGVISNHSHDESSPVGLLSKEALQQELELLRKESELRKRKLHAALIHRKELLQKVGTLEEELAKAKEECRKEIAHGESEKRKLEPYRENKDDPEKCETSKCREIEVSLKQTISEKEVELQHIKRDLKERMAAEEELQAVVQQMNQNLQDKTKQIDLLQVEISENQATIQKLTTGAKDAGDSAAPVKETHVSSPPSAGSGEHWTADLEGKTSDLEKEKEQLQKKLQEALTSRKVILKKAQEREKHLKEELGKQKDAYSLLQEQFDKQSKEIENMGNQLRQLQIEARESSDSKLPGTNQWEPGLPIQGFEEVSLEDTEQQPAQPAAEFDLHITQPSCPGDAEALQATVSVAQIKAQLIEMEVEKEELELKVSSTASELTKKSEEVFLLQEQISKQGLEIQTWKTASHEAEAHAEILQHELESSKLKLAGLEHLKTLQHELDELQKHMAQKEEEVSYLSGQLSEKEETLTKVQAEMLEQEHLIKALHTQMDMHAKDYEERLKQSQLELCQLKQKSEQVEDETKAKQQIHRKLQAALISRKEALKENKTLQEELSSARDAVEHLTKSLADVESQISVQNKEKDAFLRKLALLQEERDKLIVEVDRSLLENQSLGGSCESLKLALEGLTEDKEKLMKELESLRCSKMAEITEWQEKHKELQKEYEVLLQSYENVSNEAERIQHVVESVRQEKQELYGKLRSIETDKKETEKQLQDAEHEMEEMKEKMRKFAKSKQQKILELEEENDRLRAEAQPIGGAKESMEALLSSNSSLKEELERVKLEYKTLSKEFEALMAEKDILSEEIQGLKHQVEDGILKQASLEATEKSNEQKEETQAMVGKSQEQDSQSGSVKVEVPEGILSVTSAKPGISETFRSHDDINNYLQQLDQLNGRIAELEMEKQCDRELNRTLENEKNALLSQISAKDGELKLLEEEVAKINTLNQQIQEELSRVTKLKEMAEEEKDDLEERLMNQLAELNGSIGNYYQDVTDAQIKNEQLESEMQNLKKCMSELEEEKQQLVKEKTKVETEIRKEYLEKIQGAQKGAGNKSHAKELQELLKEKQQEVKQLQKDCIRYQEKISALEKTVKALEYVQTESQKDLDVTKGNLAQAVEHHKQAQEELSSFKVLLDDTQSEAARVLADNLRLKKELQSNKEAIKNQMKQKDEDLVRRLEQAEEKFLKEKINMQEKLDALHGEKTRVEDTLAEIQVTVAKKDKEMKQLQESLDSTMAQLAAFTKSMSSLQDDRDRVIDEAKKWEQKFGDAIQTKEKEIRLKEENCMALKDQLHQMSIHTEELKTNISRLEHDKEIWGSKAQTELQHQQKVCDTLQGENKELVSQLEETRQLYHNSMNEVAKLESELKDLKDQSSDLNNSLEKCKDHKEKLEGIIKQQEAEIQNCKFSYEQLETDLKASRELTGRLHDEIHMKEQKIVSLLSGKEEAVQVAVAELCQQHNKEIKELEHLLSQEEEENATLEEDNKKAVEKTNQLMETLENIRKENLEQKAQLNSFFKSMASLQDDRDRIISDYQQLEDRHLSVILEKDQLIQEAAAENNKLKEEIRGLRSHMDDLNSENAKLDAELIQYRQDLNEVIVIKDCQQKQLLDVQLLKNKELKNECAKLEEKLKGSEEARQSLQRSSDALQGDKQCLSTELESLKRQVAALQEEGTLGAQLKDKEEEVQRLNAALSSSQKRAAELEEELVCVQKEATRKVSEIEDKLKKELKHLHHDAGIMRNETETAEERVAELARDLVEMEQKLLMVTKENKDLMAQIQSFGRSMSSLQDSRDHATEELGDLKKKYEAVLKELTQLKEHKELRRESDVLSQAAFPLTTTENSLSHLEKLNQQLISKDEQLLHLSSQLEDCHNKVQSFSKAMTSLQTERDHLWSELEKFRKLEEGKQRAAAPSSPSSPAEMQSLKKAMSSLQNDRDRLLKELKNLQQQYLQMNQEVTNLRPLKAQLQEYQEQTKTLQMMKEKLRQENLNWQQELHQLRMEKDAWELHERQMKEQYIMAVSDKDQQLNHLQSLLRASSQTEILSTQSQRQVSLETSASLDGSQNLIHEAETLRTQLNDTLKENHQKELRIQQLNMRGPTNVDVAPGAPQEMSEVCRNSDPEATVEPQPSLAEVCSAQQELGELKKLLEEERDQRLTAENALSLAEEQIRRLQEHSEWDSARTPIIGACGSHETAVLIDLPGSTCRRTRSGAGWKRVLRSLCHSRTRVPLLAAMYLLMVHVLLILCFTGHL", "length": 3817, "header": "tr|A0A9J7FYZ2-1|A0A9J7JGC2_CRIGR Computationally mapped isoform of Golgin subfamily B member 1 isoform X11 OS=Cricetulus griseus OX=10029 GN=Golgb1 PE=4 SV=1 CANONICAL=A0A9J7JGC2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GXH5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGC2/entry#A0A9J7GXH5-1", "sequence": { "sequence": "MLSRLSGLANIVIHELSGNNYGQNMTAPLEAASDMELDNSIQEDILQRLADSEKLVVELKDIIKQKDVQLQQKDEVLQEERKAADIKIKKIKLHAKAKFTALNKHVEELKAQGGTASPTEQQAEEQPSKLDKSSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSKTQAEQAAQLDKSSAEMEKFVLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMLQEKKELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMLQEKKELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLSSMQQVVREKDARFETQVRLHEDELLQLVTQSDVETEMQQKLRVMQRKLEEHEEALLGRAQVVELLQQELTLAEQKNEALSHQLLQLEAENGTLKNTIETERQESKILMEKVELEVAERKLSFHNQQEEMHQLQGKLEQASQAQAELETQYSALEQRHRAEMEEKDAYILSLQKTEQELQSACDALKEENSELLREKSEQAAESARAIEQLEDQLQQKSKEIRQFVDIPNLQKHETASQTSLPDVYNEGTQAVTEENITSLQKRVMELEDEKRALLLCTVELEELKAENEKLSSQITLLETKNRSGETDGAVCEVPDVTQFSKSDSLTKKSGQDDPENTFSQKHKELSVLLVEMTEAQEEIAFLKSQLQGKRSDGNSEVLDQKEVKVLESEGPLSVTAGDSPFMLNEESSVPAAEKEEQDSTKDQPPPSEAGSPNEAAVDLKSSSVPDACQCHQSELESLKTQIFKLETSLHKAEEIHEKNLDEKDKEISSLTELIDELKKKAEDAHSTLTVLSEERDQLLSRIKELDVLAELRAQVQELQSSLAEAEKQRGLDYESQKTQHNLLTEQIHSLSIEAKSKDVKIEALQKELDDVQIQCSQQDTQIKSLQSQLQKKESEVIERAEHVKNISEKVEELSQALSQKELEVARMDQLLVEKKKDVETLQQTIQEKDQQVTELSFSMTEKMVQLNEEKFSLGVEIKTLKEQLNVLSRAEEAKKEQVEESHGVISNHSHDESSPVGLLSKEALQQELELLRKESELRKRKLHAALIHRKELLQKVGTLEEELAKAKEECRKEIAHGESEKRKLEPYRENKDDPEKCETSKCREIEVSLKQTISEKEVELQHIKRDLKERMAAEEELQAVVQQMNQNLQDKTKQIDLLQVEISENQATIQKLTTGAKDAGDSAAPVKETHVSSPPSAGSGEHWTADLEGKTSDLEKEKEQLQKKLQEALTSRKVILKKAQEREKHLKEELGKQKDAYSLLQEQFDKQSKEIENMGNQLRQLQIEARESSDSKLPGTNQWEPGLPIQGFEEVSLEDTEQQPAQPAAEFDLHITQPSCPGDAEALQATVSVAQIKAQLIEMEVEKEELELKVSSTASELTKKSEEVFLLQEQISKQGLEIQTWKTASHEAEAHAEILQHELESSKLKLAGLEHLKTLQHELDELQKHMAQKEEEVSYLSGQLSEKEETLTKVQAEMLEQEHLIKALHTQMDMHAKDYEERLKQSQLELCQLKQKSEQVEDETKAKQQIHRKLQAALISRKEALKENKTLQEELSSARDAVEHLTKSLADVESQISVQNKEKDAFLRKLALLQEERDKLIVEVDRSLLENQSLGGSCESLKLALEGLTEDKEKLMKELESLRCSKMAEITEWQEKHKELQKEYEVLLQSYENVSNEAERIQHVVESVRQEKQELYGKLRSIETDKKETEKQLQDAEHEMEEMKEKMRKFAKSKQQKILELEEENDRLRAEAQPIGGAKESMEALLSSNSSLKEELERVKLEYKTLSKEFEALMAEKDILSEEIQGLKHQVEDGILKQASLEATEKSNEQKEETQAMVGKSQEQDSQSGSVKVEVPEGILSVTSAKPGISETFRSHDDINNYLQQLDQLNGRIAELEMEKQCDRELNRTLENEKNALLSQISAKDGELKLLEEEVAKINTLNQQIQEELSRVTKLKEMAEEEKDDLEERLMNQLAELNGSIGNYYQDVTDAQIKNEQLESEMQNLKKCMSELEEEKQQLVKEKTKVETEIRKEYLEKIQGAQKGAGNKSHAKELQELLKEKQQEVKQLQKDCIRYQEKISALEKTVKALEYVQTESQKDLDVTKGNLAQAVEHHKQAQEELSSFKVLLDDTQSEAARVLADNLRLKKELQSNKEAIKNQMKQKDEDLVRRLEQAEEKFLKEKINMQEKLDALHGEKTRVEDTLAEIQVTVAKKDKEMKQLQESLDSTMAQLAAFTKSMSSLQDDRDRVIDEAKKWEQKFGDAIQTKEKEIRLKEENCMALKDQLHQMSIHTEELKTNISRLEHDKEIWGSKAQTELQHQQKVCDTLQGENKELVSQLEETRQLYHNSMNEVAKLESELKDLKDQSSDLNNSLEKCKDHKEKLEGIIKQQEAEIQNCKFSYEQLETDLKASRELTGRLHDEIHMKEQKIVSLLSGKEEAVQVAVAELCQQHNKEIKELEHLLSQEEEENATLEEDNKKAVEKTNQLMETLENIRKENLEQKAQLNSFFKSMASLQDDRDRIISDYQQLEDRHLSVILEKDQLIQEAAAENNKLKEEIRGLRSHMDDLNSENAKLDAELIQYRQDLNEVIVIKDCQQKQLLDVQLLKNKELKNECAKLEEKLKGSEEARQSLQRSSDALQGDKQCLSTELESLKRQVAALQEEGTLGAQLKDKEEEVQRLNAALSSSQKRAAELEEELVCVQKEATRKVSEIEDKLKKELKHLHHDAGIMRNETETAEERVAELARDLVEMEQKLLMVTKENKDLMAQIQSFGRSMSSLQDSRDHATEELGDLKKKYEAVLKELTQLKEHKELRRESDVLSQAAFPLTTTENSLSHLEKLNQQLISKDEQLLHLSSQLEDCHNKVQSFSKAMTSLQTERDHLWSELEKFRKLEEGKQRAAAPSSPSSPAEMQSLKKAMSSLQNDRDRLLKELKNLQQQYLQMNQEVTNLRPLKAQLQEYQEQTKTLQMMKEKLRQENLNWQQELHQLRMEKDAWELHERQMKEQYIMAVSDKDQQLNHLQSLLRASSQTEILSTQSQRQVSLETSASLDGSQNLIHEAETLRTQLNDTLKENHQKELRIQQLNMRLSQLLEEKNILSIQLSDANQSLRENQHHYGDLFRHCAVLERQVHQLQARGPTNVDVAPGAPQEMSEVCRNSDPEATVEPQPSLAEVCSAQQELGELKKLLEEERDQRLTAENALSLAEEQIRRLQEHSEWDSARTPIIGACGSHETAVLIDLPGSTCRRTRSGAGWKRVLRSLCHSRTRVPLLAAMYLLMVHVLLILCFTGHL", "length": 3698, "header": "tr|A0A9J7GXH5-1|A0A9J7JGC2_CRIGR Computationally mapped isoform of Golgin subfamily B member 1 isoform X11 OS=Cricetulus griseus OX=10029 GN=Golgb1 PE=4 SV=1 CANONICAL=A0A9J7JGC2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GYM3-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGC2/entry#A0A9J7GYM3-1", "sequence": { "sequence": "MLSRLSGLANIVIHELSGNNYGQNMTAPLEAASDMELDNSIQEDILQRLADSEKLVVELKDIIKQKDVQLQQKDEVLQEERKAADIKIKKIKLHAKAKFTALNKHVEELKAQGGTASPTEQQAEEQPSKLDKSSAEMEEFVLMKQQLQEKEELINTLQTQLSKTQAEQAAQLDKSSAEMEKFVLMLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMLQEKKELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMLQEKKELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLSSMQQVVREKDARFETQVRLHEDELLQLVTQSDVETEMQQKLRVMQRKLEEHEEALLGRAQVVELLQQELTLAEQKNEALSHQLLQLEAENGTLKNTIETERQESKILMEKVELEVAERKLSFHNQQEEMHQLQGKLEQASQAQAELETQYSALEQRHRAEMEEKDAYILSLQKTEQELQSACDALKEENSELLREKSEQAAESARAIEQLEDQLQQKSKEIRQFVDIPNLQKHETASQTSLPDVYNEGTQAVTEENITSLQKRVMELEDEKRALLLCTVELEELKAENEKLSSQITLLETKNRSGETDGAVCEVPDVTQFSKSDSLTKKSGQDDPENTFSQKHKELSVLLVEMTEAQEEIAFLKSQLQGKRSDGNSEVLDQKEVKVLESEGPLSVTAGDSPFMLNEESSVPAAEKEEQDSTKDQPPPSEAGSPNEAAVDLKSSSVPDACQCHQSELESLKTQIFKLETSLHKAEEIHEKNLDEKDKEISSLTELIDELKKKAEDAHSTLTVLSEERDQLLSRIKELDVLAELRAQVQELQSSLAEAEKQRGLDYESQKTQHNLLTEQIHSLSIEAKSKDVKIEALQKELDDVQIQCSQQDTQIKSLQSQLQKKESEVIERAEHVKNISEKVEELSQALSQKELEVARMDQLLVEKKKDVETLQQTIQEKDQQVTELSFSMTEKMVQLNEEKFSLGVEIKTLKEQLNVLSRAEEAKKEQVEESHGVISNHSHDESSPVGLLSKEALQQELELLRKESELRKRKLHAALIHRKELLQKVGTLEEELAKAKEECRKEIAHGESEKRKLEPYRENKDDPEKCETSKCREIEVSLKQTISEKEVELQHIKRDLKERMAAEEELQAVVQQMNQNLQDKTKQIDLLQVEISENQATIQKLTTGAKDAGDSAAPVKETHVSSPPSAGSGEHWTADLEGKTSDLEKEKEQLQKKLQEALTSRKVILKKAQEREKHLKEELGKQKDAYSLLQEQFDKQSKEIENMGNQLRQLQIEARESSDSKLPGTNQWEPGLPIQGFEEVSLEDTEQQPAQPAAEFDLHITQPSCPGDAEALQATVSVAQIKAQLIEMEVEKEELELKVSSTASELTKKSEEVFLLQEQISKQGLEIQTWKTASHEAEAHAEILQHELESSKLKLAGLEHLKTLQHELDELQKHMAQKEEEVSYLSGQLSEKEETLTKVQAEMLEQEHLIKALHTQMDMHAKDYEERLKQSQLELCQLKQKSEQVEDETKAKQQIHRKLQAALISRKEALKENKTLQEELSSARDAVEHLTKSLADVESQISVQNKEKDAFLRKLALLQEERDKLIVEVDRSLLENQSLGGSCESLKLALEGLTEDKEKLMKELESLRCSKMAEITEWQEKHKELQKEYEVLLQSYENVSNEAERIQHVVESVRQEKQELYGKLRSIETDKKETEKQLQDAEHEMEEMKEKMRKFAKSKQQKILELEEENDRLRAEAQPIGGAKESMEALLSSNSSLKEELERVKLEYKTLSKEFEALMAEKDILSEEIQGLKHQVEDGILKQASLEATEKSNEQKEETQAMVGKSQEQDSQSGSVKVEVPEGILSVTSAKPGISETFRSHDDINNYLQQLDQLNGRIAELEMEKQCDRELNRTLENEKNALLSQISAKDGELKLLEEEVAKINTLNQQIQEELSRVTKLKEMAEEEKDDLEERLMNQLAELNGSIGNYYQDVTDAQIKNEQLESEMQNLKKCMSELEEEKQQLVKEKTKVETEIRKEYLEKIQGAQKGAGNKSHAKELQELLKEKQQEVKQLQKDCIRYQEKISALEKTVKALEYVQTESQKDLDVTKGNLAQAVEHHKQAQEELSSFKVLLDDTQSEAARVLADNLRLKKELQSNKEAIKNQMKQKDEDLVRRLEQAEEKFLKEKINMQEKLDALHGEKTRVEDTLAEIQVTVAKKDKEMKQLQESLDSTMAQLAAFTKSMSSLQDDRDRVIDEAKKWEQKFGDAIQTKEKEIRLKEENCMALKDQLHQMSIHTEELKTNISRLEHDKEIWGSKAQTELQHQQKVCDTLQGENKELVSQLEETRQLYHNSMNEVAKLESELKDLKDQSSDLNNSLEKCKDHKEKLEGIIKQQEAEIQNCKFSYEQLETDLKASRELTGRLHDEIHMKEQKIVSLLSGKEEAVQVAVAELCQQHNKEIKELEHLLSQEEEENATLEEDNKKAVEKTNQLMETLENIRKENLEQKAQLNSFFKSMASLQDDRDRIISDYQQLEDRHLSVILEKDQLIQEAAAENNKLKEEIRGLRSHMDDLNSENAKLDAELIQYRQDLNEVIVIKDCQQKQLLDVQLLKNKELKNECAKLEEKLKGSEEARQSLQRSSDALQGDKQCLSTELESLKRQVAALQEEGTLGAQLKDKEEEVQRLNAALSSSQKRAAELEEELVCVQKEATRKVSEIEDKLKKELKHLHHDAGIMRNETETAEERVAELARDLVEMEQKLLMVTKENKDLMAQIQSFGRSMSSLQDSRDHATEELGDLKKKYEAVLKELTQLKEHKELRRESDVLSQAAFPLTTTENSLSHLEKLNQQLISKDEQLLHLSSQLEDCHNKVQSFSKAMTSLQTERDHLWSELEKFRKLEEGKQRAAAPSSPSSPAEMQSLKKAMSSLQNDRDRLLKELKNLQQQYLQMNQEVTNLRPLKAQLQEYQEQTKTLQMMKEKLRQENLNWQQELHQLRMEKDAWELHERQMKEQYIMAVSDKDQQLNHLQSLLRASSQTEILSTQSQRQVSLETSASLDGSQNLIHEAETLRTQLNDTLKENHQKELRIQQLNMRLSQLLEEKNILSIQLSDANQSLRENQHHYGDLFRHCAVLERQVHQLQARGPTNVDVAPGAPQEMSEVCRNSDPEATVEPQPSLAEVCSAQQELGELKKLLEEERDQRLTAENALSLAEEQIRRLQEHSEWDSARTPIIGACGSHETAVLIDLPGSTCRRTRSGAGWKRVLRSLCHSRTRVPLLAAMYLLMVHVLLILCFTGHL", "length": 3533, "header": "tr|A0A9J7GYM3-1|A0A9J7JGC2_CRIGR Computationally mapped isoform of Golgin subfamily B member 1 isoform X11 OS=Cricetulus griseus OX=10029 GN=Golgb1 PE=4 SV=1 CANONICAL=A0A9J7JGC2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GZV0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGC2/entry#A0A9J7GZV0-1", "sequence": { "sequence": "MLSRLSGLANIVIHELSGNNYGQNMTAPLEAASDMELDNSIQEDILQRLADSEKLVVELKDIIKQKDVQLQQKDEVLQEERKAADIKIKKIKLHAKAKFTALNKHVEELKAQGGTASPTEQQAEEQPSKLDKSSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELIKTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEEFILMKQQLQKKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMLQEKKELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMLQEKKELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLSSMQQVVREKDARFETQVRLHEDELLQLVTQSDVETEMQQKLRVMQRKLEEHEEALLGRAQVVELLQQELTLAEQKNEALSHQLLQLEAENGTLKNTIETERQESKILMEKVELEVAERKLSFHNQQEEMHQLQGKLEQASQAQAELETQYSALEQRHRAEMEEKDAYILSLQKTEQELQSACDALKEENSELLREKSEQAAESARAIEQLEDQLQQKSKEIRQFVDIPNLQKHETASQTSLPDVYNEGTQAVTEENITSLQKRVMELEDEKRALLLCTVELEELKAENEKLSSQITLLETKNRSGETDGAVCEVPDVTQFSKSDSLTKKSGQDDPENTFSQKHKELSVLLVEMTEAQEEIAFLKSQLQGKRSDGNSEVLDQKEVKVLESEGPLSVTAGDSPFMLNEESSVPAAEKEEQDSTKDQPPPSEAGSPNEAAVDLKSSSVPDACQCHQSELESLKTQIFKLETSLHKAEEIHEKNLDEKDKEISSLTELIDELKKKAEDAHSTLTVLSEERDQLLSRIKELDVLAELRAQVQELQSSLAEAEKQRGLDYESQKTQHNLLTEQIHSLSIEAKSKDVKIEALQKELDDVQIQCSQQDTQIKSLQSQLQKKESEVIERAEHVKNISEKVEELSQALSQKELEVARMDQLLVEKKKDVETLQQTIQEKDQQVTELSFSMTEKMVQLNEEKFSLGVEIKTLKEQLNVLSRAEEAKKEQVEESHGVISNHSHDESSPVGLLSKEALQQELELLRKESELRKRKLHAALIHRKELLQKVGTLEEELAKAKEECRKEIAHGESEKRKLEPYRENKDDPEKCETSKCREIEVSLKQTISEKEVELQHIKRDLKERMAAEEELQAVVQQMNQNLQDKTKQIDLLQVEISENQATIQKLTTGAKDAGDSAAPVKETHVSSPPSAGSGEHWTADLEGKTSDLEKEKEQLQKKLQEALTSRKVILKKAQEREKHLKEELGKQKDAYSLLQEQFDKQSKEIENMGNQLRQLQIEARESSDSKLPGTNQWEPGLPIQGFEEVSLEDTEQQPAQPAAEFDLHITQPSCPGDAEALQATVSVAQIKAQLIEMEVEKEELELKVSSTASELTKKSEEVFLLQEQISKQGLEIQTWKTASHEAEAHAEILQHELESSKLKLAGLEHLKTLQHELDELQKHMAQKEEEVSYLSGQLSEKEETLTKVQAEMLEQEHLIKALHTQMDMHAKDYEERLKQSQLELCQLKQKSEQVEDETKAKQQIHRKLQAALISRKEALKENKTLQEELSSARDAVEHLTKSLADVESQISVQNKEKDAFLRKLALLQEERDKLIVEVDRSLLENQSLGGSCESLKLALEGLTEDKEKLMKELESLRCSKMAEITEWQEKHKELQKEYEVLLQSYENVSNEAERIQHVVESVRQEKQELYGKLRSIETDKKETEKQLQDAEHEMEEMKEKMRKFAKSKQQKILELEEENDRLRAEAQPIGGAKESMEALLSSNSSLKEELERVKLEYKTLSKEFEALMAEKDILSEEIQGLKHQVEDGILKQASLEATEKSNEQKEETQAMVGKSQEQDSQSGSVKVEVPEGILSVTSAKPGISETFRSHDDINNYLQQLDQLNGRIAELEMEKQCDRELNRTLENEKNALLSQISAKDGELKLLEEEVAKINTLNQQIQEELSRVTKLKEMAEEEKDDLEERLMNQLAELNGSIGNYYQDVTDAQIKNEQLESEMQNLKKCMSELEEEKQQLVKEKTKVETEIRKEYLEKIQGAQKGAGNKSHAKELQELLKEKQQEVKQLQKDCIRYQEKISALEKTVKALEYVQTESQKDLDVTKGNLAQAVEHHKQAQEELSSFKVLLDDTQSEAARVLADNLRLKKELQSNKEAIKNQMKQKDEDLVRRLEQAEEKFLKEKINMQEKLDALHGEKTRVEDTLAEIQVTVAKKDKEMKQLQESLDSTMAQLAAFTKSMSSLQDDRDRVIDEAKKWEQKFGDAIQTKEKEIRLKEENCMALKDQLHQMSIHTEELKTNISRLEHDKEIWGSKAQTELQHQQKVCDTLQGENKELVSQLEETRQLYHNSMNEVAKLESELKDLKDQSSDLNNSLEKCKDHKEKLEGIIKQQEAEIQNCKFSYEQLETDLKASRELTGRLHDEIHMKEQKIVSLLSGKEEAVQVAVAELCQQHNKEIKELEHLLSQEEEENATLEEDNKKAVEKTNQLMETLENIRKENLEQKAQLNSFFKSMASLQDDRDRIISDYQQLEDRHLSVILEKDQLIQEAAAENNKLKEEIRGLRSHMDDLNSENAKLDAELIQYRQDLNEVIVIKDCQQKQLLDVQLLKNKELKNECAKLEEKLKGSEEARQSLQRSSDALQGDKQCLSTELESLKRQVAALQEEGTLGAQLKDKEEEVQRLNAALSSSQKRAAELEEELVCVQKEATRKVSEIEDKLKKELKHLHHDAGIMRNETETAEERVAELARDLVEMEQKLLMVTKENKDLMAQIQSFGRSMSSLQDSRDHATEELGDLKKKYEAVLKELTQLKEHKELRRESDVLSQAAFPLTTTENSLSHLEKLNQQLISKDEQLLHLSSQLEDCHNKVQSFSKAMTSLQTERDHLWSELEKFRKLEEGKQRAAAPSSPSSPAEMQSLKKAMSSLQNDRDRLLKELKNLQQQYLQMNQEVTNLRPLKAQLQEYQEQTKTLQMMKEKLRQENLNWQQELHQLRMEKDAWELHERQMKEQYIMAVSDKDQQLNHLQSLLRASSQTEILSTQSQRQVSLETSASLDGSQNLIHEAETLRTQLNDTLKENHQKELRIQQLNMRLSQLLEEKNILSIQLSDANQSLRENQHHYGDLFRHCAVLERQVHQLQARGPTNVDVAPGAPQEMSEVCRNSDPEATVEPQPSLAEVCSAQQELGELKKLLEEERDQRLTAENALSLAEEQIRRLQEHSEWDSARTPIIGACGSHETAVLIDLPGSTCRRTRSGAGWKRVLRSLCHSRTRVPLLAAMYLLMVHVLLILCFTGHL", "length": 3746, "header": "tr|A0A9J7GZV0-1|A0A9J7JGC2_CRIGR Computationally mapped isoform of Golgin subfamily B member 1 isoform X11 OS=Cricetulus griseus OX=10029 GN=Golgb1 PE=4 SV=1 CANONICAL=A0A9J7JGC2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H089-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGC2/entry#A0A9J7H089-1", "sequence": { "sequence": "MLSRLSGLANIVIHELSGNNYGQNMTAPLEAASDMELDNSIQEDILQRLADSEKLVVELKDIIKQKDVQLQQKDEVLQEERKAADIKIKKIKLHAKAKFTALNKHVEELKAQGGTASPTEQQAEEQPSKLDKSSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELIKTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEEFILMKQQLQKKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSKTQAEQAAQLDKSSAEMEKFVLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMLQEKKELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMLQEKKELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLSSMQQVVREKDARFETQVRLHEDELLQLVTQSDVETEMQQKLRVMQRKLEEHEEALLGRAQVVELLQQELTLAEQKNEALSHQLLQLEAENGTLKNTIETERQESKILMEKVELEVAERKLSFHNQQEEMHQLQGKLEQASQAQAELETQYSALEQRHRAEMEEKDAYILSLQKTEQELQSACDALKEENSELLREKSEQAAESARAIEQLEDQLQQKSKEIRQFVDIPNLQKHETASQTSLPDVYNEGTQAVTEENITSLQKRVMELEDEKRALLLCTVELEELKAENEKLSSQITLLETKNRSGETDGAVCEVPDVTQFSKSDSLTKKSGQDDPENTFSQKHKELSVLLVEMTEAQEEIAFLKSQLQGKRSDGNSEVLDQKEVKVLESEGPLSVTAGDSPFMLNEESSVPAAEKEEQDSTKDQPPPSEAGSPNEAAVDLKSSSVPDACQCHQSELESLKTQIFKLETSLHKAEEIHEKNLDEKDKEISSLTELIDELKKKAEDAHSTLTVLSEERDQLLSRIKELDVLAELRAQVQELQSSLAEAEKQRGLDYESQKTQHNLLTEQIHSLSIEAKSKDVKIEALQKELDDVQIQCSQQDTQIKSLQSQLQKKESEVIERAEHVKNISEKVEELSQALSQKELEVARMDQLLVEKKKDVETLQQTIQEKDQQVTELSFSMTEKMVQLNEEKFSLGVEIKTLKEQLNVLSRAEEAKKEQVEESHGVISNHSHDESSPVGLLSKEALQQELELLRKESELRKRKLHAALIHRKELLQKVGTLEEELAKAKEECRKEIAHGESEKRKLEPYRENKDDPEKCETSKCREIEVSLKQTISEKEVELQHIKRDLKERMAAEEELQAVVQQMNQNLQDKTKQIDLLQVEISENQATIQKLTTGAKDAGDSAAPVKETHVSSPPSAGSGEHWTADLEGKTSDLEKEKEQLQKKLQEALTSRKVILKKAQEREKHLKEELGKQKDAYSLLQEQFDKQSKEIENMGNQLRQLQIEARESSDSKLPGTNQWEPGLPIQGFEEVSLEDTEQQPAQPAAEFDLHITQPSCPGDAEALQATVSVAQIKAQLIEMEVEKEELELKVSSTASELTKKSEEVFLLQEQISKQGLEIQTWKTASHEAEAHAEILQHELESSKLKLAGLEHLKTLQHELDELQKHMAQKEEEVSYLSGQLSEKEETLTKVQAEMLEQEHLIKALHTQMDMHAKDYEERLKQSQLELCQLKQKSEQVEDETKAKQQIHRKLQAALISRKEALKENKTLQEELSSARDAVEHLTKSLADVESQISVQNKEKDAFLRKLALLQEERDKLIVEVDRSLLENQSLGGSCESLKLALEGLTEDKEKLMKELESLRCSKMAEITEWQEKHKELQKEYEVLLQSYENVSNEAERIQHVVESVRQEKQELYGKLRSIETDKKETEKQLQDAEHEMEEMKEKMRKFAKSKQQKILELEEENDRLRAEAQPIGGAKESMEALLSSNSSLKEELERVKLEYKTLSKEFEALMAEKDILSEEIQGLKHQVEDGILKQASLEATEKSNEQKEETQAMVGKSQEQDSQSGSVKVEVPEGILSVTSAKPGISETFRSHDDINNYLQQLDQLNGRIAELEMEKQCDRELNRTLENEKNALLSQISAKDGELKLLEEEVAKINTLNQQIQEELSRVTKLKEMAEEEKDDLEERLMNQLAELNGSIGNYYQDVTDAQIKNEQLESEMQNLKKCMSELEEEKQQLVKEKTKVETEIRKEYLEKIQGAQKGAGNKSHAKELQELLKEKQQEVKQLQKDCIRYQEKISALEKTVKALEYVQTESQKDLDVTKGNLAQAVEHHKQAQEELSSFKVLLDDTQSEAARVLADNLRLKKELQSNKEAIKNQMKQKDEDLVRRLEQAEEKFLKEKINMQEKLDALHGEKTRVEDTLAEIQVTVAKKDKEMKQLQESLDSTMAQLAAFTKSMSSLQDDRDRVIDEAKKWEQKFGDAIQTKEKEIRLKEENCMALKDQLHQMSIHTEELKTNISRLEHDKEIWGSKAQTELQHQQKVCDTLQGENKELVSQLEETRQLYHNSMNEVAKLESELKDLKDQSSDLNNSLEKCKDHKEKLEGIIKQQEAEIQNCKFSYEQLETDLKASRELTGRLHDEIHMKEQKIVSLLSGKEEAVQVAVAELCQQHNKEIKELEHLLSQEEEENATLEEDNKKAVEKTNQLMETLENIRKENLEQKAQLNSFFKSMASLQDDRDRIISDYQQLEDRHLSVILEKDQLIQEAAAENNKLKEEIRGLRSHMDDLNSENAKLDAELIQYRQDLNEVIVIKDCQQKQLLDVQLLKNKELKNECAKLEEKLKGSEEARQSLQRSSDALQGDKQCLSTELESLKRQVAALQEEGTLGAQLKDKEEEVQRLNAALSSSQKRAAELEEELVCVQKEATRKVSEIEDKLKKELKHLHHDAGIMRNETETAEERVAELARDLVEMEQKLLMVTKENKDLMAQIQSFGRSMSSLQDSRDHATEELGDLKKKYEAVLKELTQLKEHKELRRESDVLSQAAFPLTTTENSLSHLEKLNQQLISKDEQLLHLSSQLEDCHNKVQSFSKAMTSLQTERDHLWSELEKFRKLEEGKQRAAAPSSPSSPAEMQSLKKAMSSLQNDRDRLLKELKNLQQQYLQMNQEVTNLRPLKAQLQEYQEQTKTLQMMKEKLRQENLNWQQELHQLRMEKDAWELHERQMKEQYIMAVSDKDQQLNHLQSLLRASSQTEILSTQSQRQVSLETSASLDGSQNLIHEAETLRTQLNDTLKENHQKELRIQQLNMRLSQLLEEKNILSIQLSDANQSLRENQHHYGDLFRHCAVLERQVHQLQARGPTNVDVAPGAPQEMSEVCRNSDPEATVEPQPSLAEVCSAQQELGELKKLLEEERDQRLTAENALSLAEEQIRRLQEHSEWDSARTPIIGACGSHETAVLIDLPGSTCRRTRSGAGWKRVLRSLCHSRTRVPLLAAMYLLMVHVLLILCFTGHL", "length": 3824, "header": "tr|A0A9J7H089-1|A0A9J7JGC2_CRIGR Computationally mapped isoform of Golgin subfamily B member 1 isoform X11 OS=Cricetulus griseus OX=10029 GN=Golgb1 PE=4 SV=1 CANONICAL=A0A9J7JGC2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7H1H9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGC2/entry#A0A9J7H1H9-1", "sequence": { "sequence": "MLSRLSGLANIVIHELSGNNYGQNMTAPLEAASDMELDNSIQEDILQRLADSEKLVVELKDIIKQKDVQLQQKDEVLQEERKAADIKIKKIKLHAKAKFTALNKHVEELKAQGGTASPTEQQAEEQPSKLDKSSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELIKTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSKTQAEQAAQLDKSSAEMEKFVLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMLQEKKELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMLQEKKELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLSSMQQVVREKDARFETQVRLHEDELLQLVTQSDVETEMQQKLRVMQRKLEEHEEALLGRAQVVELLQQELTLAEQKNEALSHQLLQLEAENGTLKNTIETERQESKILMEKVELEVAERKLSFHNQQEEMHQLQGKLEQASQAQAELETQYSALEQRHRAEMEEKDAYILSLQKTEQELQSACDALKEENSELLREKSEQAAESARAIEQLEDQLQQKSKEIRQFVDIPNLQKHETASQTSLPDVYNEGTQAVTEENITSLQKRVMELEDEKRALLLCTVELEELKAENEKLSSQITLLETKNRSGETDGAVCEVPDVTQFSKSDSLTKKSGQDDPENTFSQKHKELSVLLVEMTEAQEEIAFLKSQLQGKRSDGNSEVLDQKEVKVLESEGPLSVTAGDSPFMLNEESSVPAAEKEEQDSTKDQPPPSEAGSPNEAAVDLKSSSVPDACQCHQSELESLKTQIFKLETSLHKAEEIHEKNLDEKDKEISSLTELIDELKKKAEDAHSTLTVLSEERDQLLSRIKELDVLAELRAQVQELQSSLAEAEKQRGLDYESQKTQHNLLTEQIHSLSIEAKSKDVKIEALQKELDDVQIQCSQQDTQIKSLQSQLQKKESEVIERAEHVKNISEKVEELSQALSQKELEVARMDQLLVEKKKDVETLQQTIQEKDQQVTELSFSMTEKMVQLNEEKFSLGVEIKTLKEQLNVLSRAEEAKKEQVEESHGVISNHSHDESSPVGLLSKEALQQELELLRKESELRKRKLHAALIHRKELLQKVGTLEEELAKAKEECRKEIAHGESEKRKLEPYRENKDDPEKCETSKCREIEVSLKQTISEKEVELQHIKRDLKERMAAEEELQAVVQQMNQNLQDKTKQIDLLQVEISENQATIQKLTTGAKDAGDSAAPVKETHVSSPPSAGSGEHWTADLEGKTSDLEKEKEQLQKKLQEALTSRKVILKKAQEREKHLKEELGKQKDAYSLLQEQFDKQSKEIENMGNQLRQLQIEARESSDSKLPGTNQWEPGLPIQGFEEVSLEDTEQQPAQPAAEFDLHITQPSCPGDAEALQATVSVAQIKAQLIEMEVEKEELELKVSSTASELTKKSEEVFLLQEQISKQGLEIQTWKTASHEAEAHAEILQHELESSKLKLAGLEHLKTLQHELDELQKHMAQKEEEVSYLSGQLSEKEETLTKVQAEMLEQEHLIKALHTQMDMHAKDYEERLKQSQLELCQLKQKSEQVEDETKAKQQIHRKLQAALISRKEALKENKTLQEELSSARDAVEHLTKSLADVESQISVQNKEKDAFLRKLALLQEERDKLIVEVDRSLLENQSLGGSCESLKLALEGLTEDKEKLMKELESLRCSKMAEITEWQEKHKELQKEYEVLLQSYENVSNEAERIQHVVESVRQEKQELYGKLRSIETDKKETEKQLQDAEHEMEEMKEKMRKFAKSKQQKILELEEENDRLRAEAQPIGGAKESMEALLSSNSSLKEELERVKLEYKTLSKEFEALMAEKDILSEEIQGLKHQVEDGILKQASLEATEKSNEQKEETQAMVGKSQEQDSQSGSVKVEVPEGILSVTSAKPGISETFRSHDDINNYLQQLDQLNGRIAELEMEKQCDRELNRTLENEKNALLSQISAKDGELKLLEEEVAKINTLNQQIQEELSRVTKLKEMAEEEKDDLEERLMNQLAELNGSIGNYYQDVTDAQIKNEQLESEMQNLKKCMSELEEEKQQLVKEKTKVETEIRKEYLEKIQGAQKGAGNKSHAKELQELLKEKQQEVKQLQKDCIRYQEKISALEKTVKALEYVQTESQKDLDVTKGNLAQAVEHHKQAQEELSSFKVLLDDTQSEAARVLADNLRLKKELQSNKEAIKNQMKQKDEDLVRRLEQAEEKFLKEKINMQEKLDALHGEKTRVEDTLAEIQVTVAKKDKEMKQLQESLDSTMAQLAAFTKSMSSLQDDRDRVIDEAKKWEQKFGDAIQTKEKEIRLKEENCMALKDQLHQMSIHTEELKTNISRLEHDKEIWGSKAQTELQHQQKVCDTLQGENKELVSQLEETRQLYHNSMNEVAKLESELKDLKDQSSDLNNSLEKCKDHKEKLEGIIKQQEAEIQNCKFSYEQLETDLKASRELTGRLHDEIHMKEQKIVSLLSGKEEAVQVAVAELCQQHNKEIKELEHLLSQEEEENATLEEDNKKAVEKTNQLMETLENIRKENLEQKAQLNSFFKSMASLQDDRDRIISDYQQLEDRHLSVILEKDQLIQEAAAENNKLKEEIRGLRSHMDDLNSENAKLDAELIQYRQDLNEVIVIKDCQQKQLLDVQLLKNKELKNECAKLEEKLKGSEEARQSLQRSSDALQGDKQCLSTELESLKRQVAALQEEGTLGAQLKDKEEEVQRLNAALSSSQKRAAELEEELVCVQKEATRKVSEIEDKLKKELKHLHHDAGIMRNETETAEERVAELARDLVEMEQKLLMVTKENKDLMAQIQSFGRSMSSLQDSRDHATEELGDLKKKYEAVLKELTQLKEHKELRRESDVLSQAAFPLTTTENSLSHLEKLNQQLISKDEQLLHLSSQLEDCHNKVQSFSKAMTSLQTERDHLWSELEKFRKLEEGKQRAAAPSSPSSPAEMQSLKKAMSSLQNDRDRLLKELKNLQQQYLQMNQEVTNLRPLKAQLQEYQEQTKTLQMMKEKLRQENLNWQQELHQLRMEKDAWELHERQMKEQYIMAVSDKDQQLNHLQSLLRASSQTEILSTQSQRQVSLETSASLDGSQNLIHEAETLRTQLNDTLKENHQKELRIQQLNMRLSQLLEEKNILSIQLSDANQSLRENQHHYGDLFRHCAVLERQVHQLQARGPTNVDVAPGAPQEMSEVCRNSDPEATVEPQPSLAEVCSAQQELGELKKLLEEERDQRLTAENALSLAEEQIRRLQEHSEWDSARTPIIGACGSHETAVLIDLPGSTCRRTRSGAGWKRVLRSLCHSRTRVPLLAAMYLLMVHVLLILCFTGHL", "length": 3698, "header": "tr|A0A9J7H1H9-1|A0A9J7JGC2_CRIGR Computationally mapped isoform of Golgin subfamily B member 1 isoform X11 OS=Cricetulus griseus OX=10029 GN=Golgb1 PE=4 SV=1 CANONICAL=A0A9J7JGC2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JGC2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGC2/entry#A0A9J7JGC2-1", "sequence": { "sequence": "MLSRLSGLANIVIHELSGNNYGQNMTAPLEAASDMELDNSIQEDILQRLADSEKLVVELKDIIKQKDVQLQQKDEVLQEERKAADIKIKKIKLHAKAKFTALNKHVEELKAQGGTASPTEQQAEEQPSKLDKSSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELIKTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEEFILMKQQLQKKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSKTQAEQAAQLDKSSAEMEKFVLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMLQEKKELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMLQEKKELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLSSMQQVVREKDARFETQVRLHEDELLQLVTQSDVETEMQQKLRVMQRKLEEHEEALLGRAQVVELLQQELTLAEQKNEALSHQLLQLEAENGTLKNTIETERQESKILMEKVELEVAERKLSFHNQQEEMHQLQGKLEQASQAQAELETQYSALEQRHRAEMEEKDAYILSLQKTEQELQSACDALKEENSELLREKSEQAAESARAIEQLEDQLQQKSKEIRQFVDIPNLQKHETASQTSLPDVYNEGTQAVTEENITSLQKRVMELEDEKRALLLCTVELEELKAENEKLSSQITLLETKNRSGETDGAVCEVPDVTQFSKSDSLTKKSGQDDPENTFSQKHKELSVLLVEMTEAQEEIAFLKSQLQGKRSDGNSEVLDQKEVKVLESEGPLSVTAGDSPFMLNEESSVPAAEKEEQDSTKDQPPPSEAGSPNEAAVDLKSSSVPDACQCHQSELESLKTQIFKLETSLHKAEEIHEKNLDEKDKEISSLTELIDELKKKAEDAHSTLTVLSEERDQLLSRIKELDVLAELRAQVQELQSSLAEAEKQRGLDYESQKTQHNLLTEQIHSLSIEAKSKDVKIEALQKELDDVQIQCSQQDTQIKSLQSQLQKKESEVIERAEHVKNISEKVEELSQALSQKELEVARMDQLLVEKKKDVETLQQTIQEKDQQVTELSFSMTEKMVQLNEEKFSLGVEIKTLKEQLNVLSRAEEAKKEQVEESHGVISNHSHDESSPVGLLSKEALQQELELLRKESELRKRKLHAALIHRKELLQKVGTLEEELAKAKEECRKEIAHGESEKRKLEPYRENKDDPEKCETSKCREIEVSLKQTISEKEVELQHIKRDLKERMAAEEELQAVVQQMNQNLQDKTKQIDLLQVEISENQATIQKLTTGAKDAGDSAAPVKETHVSSPPSAGSGEHWTADLEGKTSDLEKEKEQLQKKLQEALTSRKVILKKAQEREKHLKEELGKQKDAYSLLQEQFDKQSKEIENMGNQLRQLQIEARESSDSKLPGTNQWEPGLPIQGFEEVSLEDTEQQPAQPAAEFDLHITQPSCPGDAEALQATVSVAQIKAQLIEMEVEKEELELKVSSTASELTKKSEEVFLLQEQISKQGLEIQTWKTASHEAEAHAEILQHELESSKLKLAGLEHLKTLQHELDELQKHMAQKEEEVSYLSGQLSEKEETLTKVQAEMLEQEHLIKALHTQMDMHAKDYEERLKQSQLELCQLKQKSEQVEDETKAKQQIHRKLQAALISRKEALKENKTLQEELSSARDAVEHLTKSLADVESQISVQNKEKDAFLRKLALLQEERDKLIVEVDRSLLENQSLGGSCESLKLALEGLTEDKEKLMKELESLRCSKMAEITEWQEKHKELQKEYEVLLQSYENVSNEAERIQHVVESVRQEKQELYGKLRSIETDKKETEKQLQDAEHEMEEMKEKMRKFAKSKQQKILELEEENDRLRAEAQPIGGAKESMEALLSSNSSLKEELERVKLEYKTLSKEFEALMAEKDILSEEIQGLKHQVEDGILKQASLEATEKSNEQKEETQAMVGKSQEQDSQSGSVKVEVPEGILSVTSAKPGISETFRSHDDINNYLQQLDQLNGRIAELEMEKQCDRELNRTLENEKNALLSQISAKDGELKLLEEEVAKINTLNQQIQEELSRVTKLKEMAEEEKDDLEERLMNQLAELNGSIGNYYQDVTDAQIKNEQLESEMQNLKKCMSELEEEKQQLVKEKTKVETEIRKEYLEKIQGAQKGAGNKSHAKELQELLKEKQQEVKQLQKDCIRYQEKISALEKTVKALEYVQTESQKDLDVTKGNLAQAVEHHKQAQEELSSFKVLLDDTQSEAARVLADNLRLKKELQSNKEAIKNQMKQKDEDLVRRLEQAEEKFLKEKINMQEKLDALHGEKTRVEDTLAEIQVTVAKKDKEMKQLQESLDSTMAQLAAFTKSMSSLQDDRDRVIDEAKKWEQKFGDAIQTKEKEIRLKEENCMALKDQLHQMSIHTEELKTNISRLEHDKEIWGSKAQTELQHQQKVCDTLQGENKELVSQLEETRQLYHNSMNEVAKLESELKDLKDQSSDLNNSLEKCKDHKEKLEGIIKQQEAEIQNCKFSYEQLETDLKASRELTGRLHDEIHMKEQKIVSLLSGKEEAVQVAVAELCQQHNKEIKELEHLLSQEEEENATLEEDNKKAVEKTNQLMETLENIRKENLEQKAQLNSFFKSMASLQDDRDRIISDYQQLEDRHLSVILEKDQLIQEAAAENNKLKEEIRGLRSHMDDLNSENAKLDAELIQYRQDLNEVIVIKDCQQKQLLDVQLLKNKELKNECAKLEEKLKGSEEARQSLQRSSDALQGDKQCLSTELESLKRQVAALQEEGTLGAQLKDKEEEVQRLNAALSSSQKRAAELEEELVCVQKEATRKVSEIEDKLKKELKHLHHDAGIMRNETETAEERVAELARDLVEMEQKLLMVTKENKDLMAQIQSFGRSMSSLQDSRDHATEELGDLKKKYEAVLKELTQLKEHKELRRESDVLSQAAFPLTTTENSLSHLEKLNQQLISKDEQLLHLSSQLEDCHNKVQSFSKAMTSLQTERDHLWSELEKFRKLEEGKQRAAAPSSPSSPAEMQSLKKAMSSLQNDRDRLLKELKNLQQQYLQMNQEVTNLRPLKAQLQEYQEQTKTLQMMKEKLRQENLNWQQELHQLRMEKDAWELHERQMKEQYIMAVSDKDQQLNHLQSLLRASSQTEILSTQSQRQVSLETSASLDGSQNLIHEAETLRTQLNDTLKENHQKELRIQQLNMRLSQLLEEKNILSIQLSDANQSLRENQHHYGDLFRHCAVLERQVHQLQARGPTNVDVAPGAPQEMSEVCRNSDPEATVEPQPSLAEVCSAQQELGELKKLLEEERDQRLTAENALSLAEEQIRRLQEHSEWDSARTPIIGACGSHETAVLIDLPGSTCRRTRSGAGWKRVLRSLCHSRTRVPLLAAMYLLMVHVLLILCFTGHL", "length": 3866, "header": "tr|A0A9J7JGC2-1|A0A9J7JGC2_CRIGR Isoform 1 of Golgin subfamily B member 1 isoform X11 OS=Cricetulus griseus OX=10029 GN=Golgb1 PE=4 SV=1 CANONICAL=A0A9J7JGC2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JGD0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGC2/entry#A0A9J7JGD0-1", "sequence": { "sequence": "MLSRLSGLANIVIHELSGNNYGQNMTAPLEAASDMELDNSIQEDILQRLADSEKLVVELKDIIKQKDVQLQQKDEVLQEERKAADIKIKKIKLHAKAKFTALNKHVEELKAQGGTASPTEQQAEEQPSKLDKSSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELIKTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEEFILMKQQLQKKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSKTQAEQAAQLDKSSAEMEKFVLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMLQEKKELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLSSMQQVVREKDARFETQVRLHEDELLQLVTQSDVETEMQQKLRVMQRKLEEHEEALLGRAQVVELLQQELTLAEQKNEALSHQLLQLEAENGTLKNTIETERQESKILMEKVELEVAERKLSFHNQQEEMHQLQGKLEQASQAQAELETQYSALEQRHRAEMEEKDAYILSLQKTEQELQSACDALKEENSELLREKSEQAAESARAIEQLEDQLQQKSKEIRQFVDIPNLQKHETASQTSLPDVYNEGTQAVTEENITSLQKRVMELEDEKRALLLCTVELEELKAENEKLSSQITLLETKNRSGETDGAVCEVPDVTQFSKSDSLTKKSGQDDPENTFSQKHKELSVLLVEMTEAQEEIAFLKSQLQGKRSDGNSEVLDQKEVKVLESEGPLSVTAGDSPFMLNEESSVPAAEKEEQDSTKDQPPPSEAGSPNEAAVDLKSSSVPDACQCHQSELESLKTQIFKLETSLHKAEEIHEKNLDEKDKEISSLTELIDELKKKAEDAHSTLTVLSEERDQLLSRIKELDVLAELRAQVQELQSSLAEAEKQRGLDYESQKTQHNLLTEQIHSLSIEAKSKDVKIEALQKELDDVQIQCSQQDTQIKSLQSQLQKKESEVIERAEHVKNISEKVEELSQALSQKELEVARMDQLLVEKKKDVETLQQTIQEKDQQVTELSFSMTEKMVQLNEEKFSLGVEIKTLKEQLNVLSRAEEAKKEQVEESHGVISNHSHDESSPVGLLSKEALQQELELLRKESELRKRKLHAALIHRKELLQKVGTLEEELAKAKEECRKEIAHGESEKRKLEPYRENKDDPEKCETSKCREIEVSLKQTISEKEVELQHIKRDLKERMAAEEELQAVVQQMNQNLQDKTKQIDLLQVEISENQATIQKLTTGAKDAGDSAAPVKETHVSSPPSAGSGEHWTADLEGKTSDLEKEKEQLQKKLQEALTSRKVILKKAQEREKHLKEELGKQKDAYSLLQEQFDKQSKEIENMGNQLRQLQIEARESSDSKLPGTNQWEPGLPIQGFEEVSLEDTEQQPAQPAAEFDLHITQPSCPGDAEALQATVSVAQIKAQLIEMEVEKEELELKVSSTASELTKKSEEVFLLQEQISKQGLEIQTWKTASHEAEAHAEILQHELESSKLKLAGLEHLKTLQHELDELQKHMAQKEEEVSYLSGQLSEKEETLTKVQAEMLEQEHLIKALHTQMDMHAKDYEERLKQSQLELCQLKQKSEQVEDETKAKQQIHRKLQAALISRKEALKENKTLQEELSSARDAVEHLTKSLADVESQISVQNKEKDAFLRKLALLQEERDKLIVEVDRSLLENQSLGGSCESLKLALEGLTEDKEKLMKELESLRCSKMAEITEWQEKHKELQKEYEVLLQSYENVSNEAERIQHVVESVRQEKQELYGKLRSIETDKKETEKQLQDAEHEMEEMKEKMRKFAKSKQQKILELEEENDRLRAEAQPIGGAKESMEALLSSNSSLKEELERVKLEYKTLSKEFEALMAEKDILSEEIQGLKHQVEDGILKQASLEATEKSNEQKEETQAMVGKSQEQDSQSGSVKVEVPEGILSVTSAKPGISETFRSHDDINNYLQQLDQLNGRIAELEMEKQCDRELNRTLENEKNALLSQISAKDGELKLLEEEVAKINTLNQQIQEELSRVTKLKEMAEEEKDDLEERLMNQLAELNGSIGNYYQDVTDAQIKNEQLESEMQNLKKCMSELEEEKQQLVKEKTKVETEIRKEYLEKIQGAQKGAGNKSHAKELQELLKEKQQEVKQLQKDCIRYQEKISALEKTVKALEYVQTESQKDLDVTKGNLAQAVEHHKQAQEELSSFKVLLDDTQSEAARVLADNLRLKKELQSNKEAIKNQMKQKDEDLVRRLEQAEEKFLKEKINMQEKLDALHGEKTRVEDTLAEIQVTVAKKDKEMKQLQESLDSTMAQLAAFTKSMSSLQDDRDRVIDEAKKWEQKFGDAIQTKEKEIRLKEENCMALKDQLHQMSIHTEELKTNISRLEHDKEIWGSKAQTELQHQQKVCDTLQGENKELVSQLEETRQLYHNSMNEVAKLESELKDLKDQSSDLNNSLEKCKDHKEKLEGIIKQQEAEIQNCKFSYEQLETDLKASRELTGRLHDEIHMKEQKIVSLLSGKEEAVQVAVAELCQQHNKEIKELEHLLSQEEEENATLEEDNKKAVEKTNQLMETLENIRKENLEQKAQLNSFFKSMASLQDDRDRIISDYQQLEDRHLSVILEKDQLIQEAAAENNKLKEEIRGLRSHMDDLNSENAKLDAELIQYRQDLNEVIVIKDCQQKQLLDVQLLKNKELKNECAKLEEKLKGSEEARQSLQRSSDALQGDKQCLSTELESLKRQVAALQEEGTLGAQLKDKEEEVQRLNAALSSSQKRAAELEEELVCVQKEATRKVSEIEDKLKKELKHLHHDAGIMRNETETAEERVAELARDLVEMEQKLLMVTKENKDLMAQIQSFGRSMSSLQDSRDHATEELGDLKKKYEAVLKELTQLKEHKELRRESDVLSQAAFPLTTTENSLSHLEKLNQQLISKDEQLLHLSSQLEDCHNKVQSFSKAMTSLQTERDHLWSELEKFRKLEEGKQRAAAPSSPSSPAEMQSLKKAMSSLQNDRDRLLKELKNLQQQYLQMNQEVTNLRPLKAQLQEYQEQTKTLQMMKEKLRQENLNWQQELHQLRMEKDAWELHERQMKEQYIMAVSDKDQQLNHLQSLLRASSQTEILSTQSQRQVSLETSASLDGSQNLIHEAETLRTQLNDTLKENHQKELRIQQLNMRLSQLLEEKNILSIQLSDANQSLRENQHHYGDLFRHCAVLERQVHQLQARGPTNVDVAPGAPQEMSEVCRNSDPEATVEPQPSLAEVCSAQQELGELKKLLEEERDQRLTAENALSLAEEQIRRLQEHSEWDSARTPIIGACGSHETAVLIDLPGSTCRRTRSGAGWKRVLRSLCHSRTRVPLLAAMYLLMVHVLLILCFTGHL", "length": 3668, "header": "tr|A0A9J7JGD0-1|A0A9J7JGD0_CRIGR Computationally mapped isoform of Golgin subfamily B member 1 isoform X31 OS=Cricetulus griseus OX=10029 GN=Golgb1 PE=4 SV=1 CANONICAL=A0A9J7JGC2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JKY5-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGC2/entry#A0A9J7JKY5-1", "sequence": { "sequence": "MLSRLSGLANIVIHELSGNNYGQNMTAPLEAASDMELDNSIQEDILQRLADSEKLVVELKDIIKQKDVQLQQKDEVLQEERKAADIKIKKIKLHAKAKFTALNKHVEELKAQGGTASPTEQQAEEQPSKLDKSSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELIKTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEEFILMKQQLQKKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSKTQAEQAAQLDKSSAEMEKFVLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMLQEKKELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLSSMQQVVREKDARFETQVRLHEDELLQLVTQSDVETEMQQKLRVMQRKLEEHEEALLGRAQVVELLQQELTLAEQKNEALSHQLLQLEAENGTLKNTIETERQESKILMEKVELEVAERKLSFHNQQEEMHQLQGKLEQASQAQAELETQYSALEQRHRAEMEEKDAYILSLQKTEQELQSACDALKEENSELLREKSEQAAESARAIEQLEDQLQQKSKEIRQFVDIPNLQKHETASQTSLPDVYNEGTQAVTEENITSLQKRVMELEDEKRALLLCTVELEELKAENEKLSSQITLLETKNRSGETDGAVCEVPDVTQFSKSDSLTKKSGQDDPENTFSQKHKELSVLLVEMTEAQEEIAFLKSQLQGKRSDGNSEVLDQKEVKVLESEGPLSVTAGDSPFMLNEESSVPAAEKEEQDSTKDQPPPSEAGSPNEAAVDLKSSSVPDACQCHQSELESLKTQIFKLETSLHKAEEIHEKNLDEKDKEISSLTELIDELKKKAEDAHSTLTVLSEERDQLLSRIKELDVLAELRAQVQELQSSLAEAEKQRGLDYESQKTQHNLLTEQIHSLSIEAKSKDVKIEALQKELDDVQIQCSQQDTQIKSLQSQLQKKESEVIERAEHVKNISEKVEELSQALSQKELEVARMDQLLVEKKKDVETLQQTIQEKDQQVTELSFSMTEKMVQLNEEKFSLGVEIKTLKEQLNVLSRAEEAKKEQVEESHGVISNHSHDESSPVGLLSKEALQQELELLRKESELRKRKLHAALIHRKELLQKVGTLEEELAKAKEECRKEIAHGESEKRKLEPYRENKDDPEKCETSKCREIEVSLKQTISEKEVELQHIKRDLKERMAAEEELQAVVQQMNQNLQDKTKQIDLLQVEISENQATIQKLTTGAKDAGDSAAPVKETHVSSPPSAGSGEHWTADLEGKTSDLEKEKEQLQKKLQEALTSRKVILKKAQEREKHLKEELGKQKDAYSLLQEQFDKQSKEIENMGNQLRQLQIEARESSDSKLPGTNQWEPGLPIQGFEEVSLEDTEQQPAQPAAEFDLHITQPSCPGDAEALQATVSVAQIKAQLIEMEVEKEELELKVSSTASELTKKSEEVFLLQEQISKQGLEIQTWKTASHEAEAHAEILQHELESSKLKLAGLEHLKTLQHELDELQKHMAQKEEEVSYLSGQLSEKEETLTKVQAEMLEQEHLIKALHTQMDMHAKDYEERLKQSQLELCQLKQKSEQVEDETKAKQQIHRKLQAALISRKEALKENKTLQEELSSARDAVEHLTKSLADVESQISVQNKEKDAFLRKLALLQEERDKLIVEVDRSLLENQSLGGSCESLKLALEGLTEDKEKLMKELESLRCSKMAEITEWQEKHKELQKEYEVLLQSYENVSNEAERIQHVVESVRQEKQELYGKLRSIETDKKETEKQLQDAEHEMEEMKEKMRKFAKSKQQKILELEEENDRLRAEAQPIGGAKESMEALLSSNSSLKEELERVKLEYKTLSKEFEALMAEKDILSEEIQGLKHQVEDGILKQASLEATEKSNEQKEETQAMVGKSQEQDSQSGSVKVEVPEGILSVTSAKPGISETFRSHDDINNYLQQLDQLNGRIAELEMEKQCDRELNRTLENEKNALLSQISAKDGELKLLEEEVAKINTLNQQIQEELSRVTKLKEMAEEEKDDLEERLMNQLAELNGSIGNYYQDVTDAQIKNEQLESEMQNLKKCMSELEEEKQQLVKEKTKVETEIRKEYLEKIQGAQKGAGNKSHAKELQELLKEKQQEVKQLQKDCIRYQEKISALEKTVKALEYVQTESQKDLDVTKGNLAQAVEHHKQAQEELSSFKVLLDDTQSEAARVLADNLRLKKELQSNKEAIKNQMKQKDEDLVRRLEQAEEKFLKEKINMQEKLDALHGEKTRVEDTLAEIQVTVAKKDKEMKQLQESLDSTMAQLAAFTKSMSSLQDDRDRVIDEAKKWEQKFGDAIQTKEKEIRLKEENCMALKDQLHQMSIHTEELKTNISRLEHDKEIWGSKAQTELQHQQKVCDTLQGENKELVSQLEETRQLYHNSMNEVAKLESELKDLKDQSSDLNNSLEKCKDHKEKLEGIIKQQEAEIQNCKFSYEQLETDLKASRELTGRLHDEIHMKEQKIVSLLSGKEEAVQVAVAELCQQHNKEIKELEHLLSQEEEENATLEEDNKKAVEKTNQLMETLENIRKENLEQKAQLNSFFKSMASLQDDRDRIISDYQQLEDRHLSVILEKDQLIQEAAAENNKLKEEIRGLRSHMDDLNSENAKLDAELIQYRQDLNEVIVIKDCQQKQLLDVQLLKNKELKNECAKLEEKLKGSEEARQSLQRSSDALQGDKQCLSTELESLKRQVAALQEEGTLGAQLKDKEEEVQRLNAALSSSQKRAAELEEELVCVQKEATRKVSEIEDKLKKELKHLHHDAGIMRNETETAEERVAELARDLVEMEQKLLMVTKENKDLMAQIQSFGRSMSSLQDSRDHATEELGDLKKKYEAVLKELTQLKEHKELRRESDVLSQAAFPLTTTENSLSHLEKLNQQLISKDEQLLHLSSQLEDCHNKVQSFSKAMTSLQTERDHLWSELEKFRKLEEGKQRAAAPSSPSSPAEMQSLKKAMSSLQNDRDRLLKELKNLQQQYLQMNQEVTNLRPLKAQLQEYQEQTKTLQMMKEKLRQENLNWQQELHQLRMEKDAWELHERQMKEQYIMAVSDKDQQLNHLQSLLRASSQTEILSTQSQRQVSLETSASLDGSQNLIHEAETLRTQLNDTLKENHQKELRIQQLNMRLSQLLEEKNILSIQLSDANQSLRENQHHYGDLFRHCAVLERQVHQLQARGPTNVDVAPGAPQEMSEVCRNSDPEATVEPQPSLAEVCSAQQELGELKKLLEEERDQRLTAENALSLAEEQIRRLQEHSEWDSARTPIIGACGSHETAVLIDLPGSTCRRTRSGAGWKRVLRSLCHSRTRVPLLAAMYLLMVHVLLILCFTGHL", "length": 3749, "header": "tr|A0A9J7JKY5-1|A0A9J7JGC2_CRIGR Computationally mapped isoform of Golgin subfamily B member 1 isoform X11 OS=Cricetulus griseus OX=10029 GN=Golgb1 PE=4 SV=1 CANONICAL=A0A9J7JGC2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JMV4-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGC2/entry#A0A9J7JMV4-1", "sequence": { "sequence": "MELDNSIQEDILQRLADSEKLVVELKDIIKQKDVQLQQKDEVLQEERKAADIKIKKIKLHAKAKFTALNKHVEELKAQGGTASPTEQQAEEQPSKLDKSSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELIKTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEEFILMKQQLQKKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSKTQAEQAAQLDKSSAEMEKFVLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMLQEKKELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMLQEKKELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLSSMQQVVREKDARFETQVRLHEDELLQLVTQSDVETEMQQKLRVMQRKLEEHEEALLGRAQVVELLQQELTLAEQKNEALSHQLLQLEAENGTLKNTIETERQESKILMEKVELEVAERKLSFHNQQEEMHQLQGKLEQASQAQAELETQYSALEQRHRAEMEEKDAYILSLQKTEQELQSACDALKEENSELLREKSEQAAESARAIEQLEDQLQQKSKEIRQFVDIPNLQKHETASQTSLPDVYNEGTQAVTEENITSLQKRVMELEDEKRALLLCTVELEELKAENEKLSSQITLLETKNRSGETDGAVCEVPDVTQFSKSDSLTKKSGQDDPENTFSQKHKELSVLLVEMTEAQEEIAFLKSQLQGKRSDGNSEVLDQKEVKVLESEGPLSVTAGDSPFMLNEESSVPAAEKEEQDSTKDQPPPSEAGSPNEAAVDLKSSSVPDACQCHQSELESLKTQIFKLETSLHKAEEIHEKNLDEKDKEISSLTELIDELKKKAEDAHSTLTVLSEERDQLLSRIKELDVLAELRAQVQELQSSLAEAEKQRGLDYESQKTQHNLLTEQIHSLSIEAKSKDVKIEALQKELDDVQIQCSQQDTQIKSLQSQLQKKESEVIERAEHVKNISEKVEELSQALSQKELEVARMDQLLVEKKKDVETLQQTIQEKDQQVTELSFSMTEKMVQLNEEKFSLGVEIKTLKEQLNVLSRAEEAKKEQVEESHGVISNHSHDESSPVGLLSKEALQQELELLRKESELRKRKLHAALIHRKELLQKVGTLEEELAKAKEECRKEIAHGESEKRKLEPYRENKDDPEKCETSKCREIEVSLKQTISEKEVELQHIKRDLKERMAAEEELQAVVQQMNQNLQDKTKQIDLLQVEISENQATIQKLTTGAKDAGDSAAPVKETHVSSPPSAGSGEHWTADLEGKTSDLEKEKEQLQKKLQEALTSRKVILKKAQEREKHLKEELGKQKDAYSLLQEQFDKQSKEIENMGNQLRQLQIEARESSDSKLPGTNQWEPGLPIQGFEEVSLEDTEQQPAQPAAEFDLHITQPSCPGDAEALQATVSVAQIKAQLIEMEVEKEELELKVSSTASELTKKSEEVFLLQEQISKQGLEIQTWKTASHEAEAHAEILQHELESSKLKLAGLEHLKTLQHELDELQKHMAQKEEEVSYLSGQLSEKEETLTKVQAEMLEQEHLIKALHTQMDMHAKDYEERLKQSQLELCQLKQKSEQVEDETKAKQQIHRKLQAALISRKEALKENKTLQEELSSARDAVEHLTKSLADVESQISVQNKEKDAFLRKLALLQEERDKLIVEVDRSLLENQSLGGSCESLKLALEGLTEDKEKLMKELESLRCSKMAEITEWQEKHKELQKEYEVLLQSYENVSNEAERIQHVVESVRQEKQELYGKLRSIETDKKETEKQLQDAEHEMEEMKEKMRKFAKSKQQKILELEEENDRLRAEAQPIGGAKESMEALLSSNSSLKEELERVKLEYKTLSKEFEALMAEKDILSEEIQGLKHQVEDGILKQASLEATEKSNEQKEETQAMVGKSQEQDSQSGSVKVEVPEGILSVTSAKPGISETFRSHDDINNYLQQLDQLNGRIAELEMEKQCDRELNRTLENEKNALLSQISAKDGELKLLEEEVAKINTLNQQIQEELSRVTKLKEMAEEEKDDLEERLMNQLAELNGSIGNYYQDVTDAQIKNEQLESEMQNLKKCMSELEEEKQQLVKEKTKVETEIRKEYLEKIQGAQKGAGNKSHAKELQELLKEKQQEVKQLQKDCIRYQEKISALEKTVKALEYVQTESQKDLDVTKGNLAQAVEHHKQAQEELSSFKVLLDDTQSEAARVLADNLRLKKELQSNKEAIKNQMKQKDEDLVRRLEQAEEKFLKEKINMQEKLDALHGEKTRVEDTLAEIQVTVAKKDKEMKQLQESLDSTMAQLAAFTKSMSSLQDDRDRVIDEAKKWEQKFGDAIQTKEKEIRLKEENCMALKDQLHQMSIHTEELKTNISRLEHDKEIWGSKAQTELQHQQKVCDTLQGENKELVSQLEETRQLYHNSMNEVAKLESELKDLKDQSSDLNNSLEKCKDHKEKLEGIIKQQEAEIQNCKFSYEQLETDLKASRELTGRLHDEIHMKEQKIVSLLSGKEEAVQVAVAELCQQHNKEIKELEHLLSQEEEENATLEEDNKKAVEKTNQLMETLENIRKENLEQKAQLNSFFKSMASLQDDRDRIISDYQQLEDRHLSVILEKDQLIQEAAAENNKLKEEIRGLRSHMDDLNSENAKLDAELIQYRQDLNEVIVIKDCQQKQLLDVQLLKNKELKNECAKLEEKLKGSEEARQSLQRSSDALQGDKQCLSTELESLKRQVAALQEEGTLGAQLKDKEEEVQRLNAALSSSQKRAAELEEELVCVQKEATRKVSEIEDKLKKELKHLHHDAGIMRNETETAEERVAELARDLVEMEQKLLMVTKENKDLMAQIQSFGRSMSSLQDSRDHATEELGDLKKKYEAVLKELTQLKEHKELRRESDVLSQAAFPLTTTENSLSHLEKLNQQLISKDEQLLHLSSQLEDCHNKVQSFSKAMTSLQTERDHLWSELEKFRKLEEGKQRAAAPSSPSSPAEMQSLKKAMSSLQNDRDRLLKELKNLQQQYLQMNQEVTNLRPLKAQLQEYQEQTKTLQMMKEKLRQENLNWQQELHQLRMEKDAWELHERQMKEQYIMAVSDKDQQLNHLQSLLRASSQTEILSTQSQRQVSLETSASLDGSQNLIHEAETLRTQLNDTLKENHQKELRIQQLNMRLSQLLEEKNILSIQLSDANQSLRENQHHYGDLFRHCAVLERQVHQLQARGPTNVDVAPGAPQEMSEVCRNSDPEATVEPQPSLAEVCSAQQELGELKKLLEEERDQRLTAENALSLAEEQIRRLQEHSEWDSARTPIIGACGSHETAVLIDLPGSTCRRTRSGAGWKRVLRSLCHSRTRVPLLAAMYLLMVHVLLILCFTGHL", "length": 3832, "header": "tr|A0A9J7JMV4-1|A0A9J7JGC2_CRIGR Computationally mapped isoform of Golgin subfamily B member 1 isoform X11 OS=Cricetulus griseus OX=10029 GN=Golgb1 PE=4 SV=1 CANONICAL=A0A9J7JGC2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JMW0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGC2/entry#A0A9J7JMW0-1", "sequence": { "sequence": "MLSRLSGLANIVIHELSGNNYGQNMTAPLEAASDMELDNSIQEDILQRLADSEKLVVELKDIIKQKDVQLQQKDEVLQEERKAADIKIKKIKLHAKAKFTALNKHVEELKAQGGTASPTEQQAEEQPSKLDKSSAEMEEFVLMKQQLQEKEELINTLQTQLSKTQAEQAAQLDKSSAEMEKFVLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMLQEKKELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMLQEKKELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLSSMQQVVREKDARFETQVRLHEDELLQLVTQSDVETEMQQKLRVMQRKLEEHEEALLGRAQVVELLQQELTLAEQKNEALSHQLLQLEAENGTLKNTIETERQESKILMEKVELEVAERKLSFHNQQEEMHQLQGKLEQASQAQAELETQYSALEQRHRAEMEEKDAYILSLQKTEQELQSACDALKEENSELLREKSEQAAESARAIEQLEDQLQQKSKEIRQFVDIPNLQKHETASQTSLPDVYNEGTQAVTEENITSLQKRVMELEDEKRALLLCTVELEELKAENEKLSSQITLLETKNRSGETDGAVCEVPDVTQFSKSDSLTKKSGQDDPENTFSQKHKELSVLLVEMTEAQEEIAFLKSQLQGKRSDGNSEVLDQKEVKVLESEGPLSVTAGDSPFMLNEESSVPAAEKEEQDSTKDQPPPSEAGSPNEAAVDLKSSSVPDACQCHQSELESLKTQIFKLETSLHKAEEIHEKNLDEKDKEISSLTELIDELKKKAEDAHSTLTVLSEERDQLLSRIKELDVLAELRAQVQELQSSLAEAEKQRGLDYESQKTQHNLLTEQIHSLSIEAKSKDVKIEALQKELDDVQIQCSQQDTQIKSLQSQLQKKESEVIERAEHVKNISEKVEELSQALSQKELEVARMDQLLVEKKKDVETLQQTIQEKDQQVTELSFSMTEKMVQLNEEKFSLGVEIKTLKEQLNVLSRAEEAKKEQVEESHGVISNHSHDESSPVGLLSKEALQQELELLRKESELRKRKLHAALIHRKELLQKVGTLEEELAKAKEECRKEIAHGESEKRKLEPYRENKDDPEKCETSKCREIEVSLKQTISEKEVELQHIKRDLKERMAAEEELQAVVQQMNQNLQDKTKQIDLLQVEISENQATIQKLTTGAKDAGDSAAPVKETHVSSPPSAGSGEHWTADLEGKTSDLEKEKEQLQKKLQEALTSRKVILKKAQEREKHLKEELGKQKDAYSLLQEQFDKQSKEIENMGNQLRQLQIEARESSDSKLPGTNQWEPGLPIQGFEEVSLEDTEQQPAQPAAEFDLHITQPSCPGDAEALQATVSVAQIKAQLIEMEVEKEELELKVSSTASELTKKSEEVFLLQEQISKQGLEIQTWKTASHEAEAHAEILQHELESSKLKLAGLEHLKTLQHELDELQKHMAQKEEEVSYLSGQLSEKEETLTKVQAEMLEQEHLIKALHTQMDMHAKDYEERLKQSQLELCQLKQKSEQVEDETKAKQQIHRKLQAALISRKEALKENKTLQEELSSARDAVEHLTKSLADVESQISVQNKEKDAFLRKLALLQEERDKLIVEVDRSLLENQSLGGSCESLKLALEGLTEDKEKLMKELESLRCSKMAEITEWQEKHKELQKEYEVLLQSYENVSNEAERIQHVVESVRQEKQELYGKLRSIETDKKETEKQLQDAEHEMEEMKEKMRKFAKSKQQKILELEEENDRLRAEAQPIGGAKESMEALLSSNSSLKEELERVKLEYKTLSKEFEALMAEKDILSEEIQGLKHQVEDGILKQASLEATEKSNEQKEETQAMVGKSQEQDSQSGSVKVEVPEGILSVTSAKPGISETFRSHDDINNYLQQLDQLNGRIAELEMEKQCDRELNRTLENEKNALLSQISAKDGELKLLEEEVAKINTLNQQIQEELSRVTKLKEMAEEEKDDLEERLMNQLAELNGSIGNYYQDVTDAQIKNEQLESEMQNLKKCMSELEEEKQQLVKEKTKVETEIRKEYLEKIQGAQKGAGNKSHAKELQELLKEKQQEVKQLQKDCIRYQEKISALEKTVKALEYVQTESQKDLDVTKGNLAQAVEHHKQAQEELSSFKVLLDDTQSEAARVLADNLRLKKELQSNKEAIKNQMKQKDEDLVRRLEQAEEKFLKEKINMQEKLDALHGEKTRVEDTLAEIQVTVAKKDKEMKQLQESLDSTMAQLAAFTKSMSSLQDDRDRVIDEAKKWEQKFGDAIQTKEKEIRLKEENCMALKDQLHQMSIHTEELKTNISRLEHDKEIWGSKAQTELQHQQKVCDTLQGENKELVSQLEETRQLYHNSMNEVAKLESELKDLKDQSSDLNNSLEKCKDHKEKLEGIIKQQEAEIQNCKFSYEQLETDLKASRELTGRLHDEIHMKEQKIVSLLSGKEEAVQVAVAELCQQHNKEIKELEHLLSQEEEENATLEEDNKKAVEKTNQLMETLENIRKENLEQKAQLNSFFKSMASLQDDRDRIISDYQQLEDRHLSVILEKDQLIQEAAAENNKLKEEIRGLRSHMDDLNSENAKLDAELIQYRQDLNEVIVIKDCQQKQLLDVQLLKNKELKNECAKLEEKLKGSEEARQSLQRSSDALQGDKQCLSTELESLKRQVAALQEEGTLGAQLKDKEEEVQRLNAALSSSQKRAAELEEELVCVQKEATRKVSEIEDKLKKELKHLHHDAGIMRNETETAEERVAELARDLVEMEQKLLMVTKENKDLMAQIQSFGRSMSSLQDSRDHATEELGDLKKKYEAVLKELTQLKEHKELRRESDVLSQAAFPLTTTENSLSHLEKLNQQLISKDEQLLHLSSQLEDCHNKVQSFSKAMTSLQTERDHLWSELEKFRKLEEGKQRAAAPSSPSSPAEMQSLKKAMSSLQNDRDRLLKELKNLQQQYLQMNQEVTNLRPLKAQLQEYQEQTKTLQMMKEKLRQENLNWQQELHQLRMEKDAWELHERQMKEQYIMAVSDKDQQLNHLQSLLRASSQTEILSTQSQRQVSLETSASLDGSQNLIHEAETLRTQLNDTLKENHQKELRIQQLNMRLSQLLEEKNILSIQLSDANQSLRENQHHYGDLFRHCAVLERQVHQLQARGPTNVDVAPGAPQEMSEVCRNSDPEATVEPQPSLAEVCSAQQELGELKKLLEEERDQRLTAENALSLAEEQIRRLQEHSEWDSARTPIIGACGSHETAVLIDLPGSTCRRTRSGAGWKRVLRSLCHSRTRVPLLAAMYLLMVHVLLILCFTGHL", "length": 3575, "header": "tr|A0A9J7JMW0-1|A0A9J7JGC2_CRIGR Computationally mapped isoform of Golgin subfamily B member 1 isoform X11 OS=Cricetulus griseus OX=10029 GN=Golgb1 PE=4 SV=1 CANONICAL=A0A9J7JGC2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JNR0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGC2/entry#A0A9J7JNR0-1", "sequence": { "sequence": "MLSRLSGLANIVIHELSGNNYGQNMTAPLEAASDMELDNSIQEDILQRLADSEKLVVELKDIIKQKDVQLQQKDEVLQEERKAADIKIKKIKLHAKAKFTALNKHVEELKAQGGTASPTEQQAEEQPSKLDKSSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELIKTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEEFILMKQQLQKKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSKTQAEQAAQLDKSSAEMEKFVLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMLQEKKELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMLQEKKELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQVVREKDARFETQVRLHEDELLQLVTQSDVETEMQQKLRVMQRKLEEHEEALLGRAQVVELLQQELTLAEQKNEALSHQLLQLEAENGTLKNTIETERQESKILMEKVELEVAERKLSFHNQQEEMHQLQGKLEQASQAQAELETQYSALEQRHRAEMEEKDAYILSLQKTEQELQSACDALKEENSELLREKSEQAAESARAIEQLEDQLQQKSKEIRQFVDIPNLQKHETASQTSLPDVYNEGTQAVTEENITSLQKRVMELEDEKRALLLCTVELEELKAENEKLSSQITLLETKNRSGETDGAVCEVPDVTQFSKSDSLTKKSGQDDPENTFSQKHKELSVLLVEMTEAQEEIAFLKSQLQGKRSDGNSEVLDQKEVKVLESEGPLSVTAGDSPFMLNEESSVPAAEKEEQDSTKDQPPPSEAGSPNEAAVDLKSSSVPDACQCHQSELESLKTQIFKLETSLHKAEEIHEKNLDEKDKEISSLTELIDELKKKAEDAHSTLTVLSEERDQLLSRIKELDVLAELRAQVQELQSSLAEAEKQRGLDYESQKTQHNLLTEQIHSLSIEAKSKDVKIEALQKELDDVQIQCSQQDTQIKSLQSQLQKKESEVIERAEHVKNISEKVEELSQALSQKELEVARMDQLLVEKKKDVETLQQTIQEKDQQVTELSFSMTEKMVQLNEEKFSLGVEIKTLKEQLNVLSRAEEAKKEQVEESHGVISNHSHDESSPVGLLSKEALQQELELLRKESELRKRKLHAALIHRKELLQKVGTLEEELAKAKEECRKEIAHGESEKRKLEPYRENKDDPEKCETSKCREIEVSLKQTISEKEVELQHIKRDLKERMAAEEELQAVVQQMNQNLQDKTKQIDLLQVEISENQATIQKLTTGAKDAGDSAAPVKETHVSSPPSAGSGEHWTADLEGKTSDLEKEKEQLQKKLQEALTSRKVILKKAQEREKHLKEELGKQKDAYSLLQEQFDKQSKEIENMGNQLRQLQIEARESSDSKLPGTNQWEPGLPIQGFEEVSLEDTEQQPAQPAAEFDLHITQPSCPGDAEALQATVSVAQIKAQLIEMEVEKEELELKVSSTASELTKKSEEVFLLQEQISKQGLEIQTWKTASHEAEAHAEILQHELESSKLKLAGLEHLKTLQHELDELQKHMAQKEEEVSYLSGQLSEKEETLTKVQAEMLEQEHLIKALHTQMDMHAKDYEERLKQSQLELCQLKQKSEQVEDETKAKQQIHRKLQAALISRKEALKENKTLQEELSSARDAVEHLTKSLADVESQISVQNKEKDAFLRKLALLQEERDKLIVEVDRSLLENQSLGGSCESLKLALEGLTEDKEKLMKELESLRCSKMAEITEWQEKHKELQKEYEVLLQSYENVSNEAERIQHVVESVRQEKQELYGKLRSIETDKKETEKQLQDAEHEMEEMKEKMRKFAKSKQQKILELEEENDRLRAEAQPIGGAKESMEALLSSNSSLKEELERVKLEYKTLSKEFEALMAEKDILSEEIQGLKHQVEDGILKQASLEATEKSNEQKEETQAMVGKSQEQDSQSGSVKVEVPEGILSVTSAKPGISETFRSHDDINNYLQQLDQLNGRIAELEMEKQCDRELNRTLENEKNALLSQISAKDGELKLLEEEVAKINTLNQQIQEELSRVTKLKEMAEEEKDDLEERLMNQLAELNGSIGNYYQDVTDAQIKNEQLESEMQNLKKCMSELEEEKQQLVKEKTKVETEIRKEYLEKIQGAQKGAGNKSHAKELQELLKEKQQEVKQLQKDCIRYQEKISALEKTVKALEYVQTESQKDLDVTKGNLAQAVEHHKQAQEELSSFKVLLDDTQSEAARVLADNLRLKKELQSNKEAIKNQMKQKDEDLVRRLEQAEEKFLKEKINMQEKLDALHGEKTRVEDTLAEIQVTVAKKDKEMKQLQESLDSTMAQLAAFTKSMSSLQDDRDRVIDEAKKWEQKFGDAIQTKEKEIRLKEENCMALKDQLHQMSIHTEELKTNISRLEHDKEIWGSKAQTELQHQQKVCDTLQGENKELVSQLEETRQLYHNSMNEVAKLESELKDLKDQSSDLNNSLEKCKDHKEKLEGIIKQQEAEIQNCKFSYEQLETDLKASRELTGRLHDEIHMKEQKIVSLLSGKEEAVQVAVAELCQQHNKEIKELEHLLSQEEEENATLEEDNKKAVEKTNQLMETLENIRKENLEQKAQLNSFFKSMASLQDDRDRIISDYQQLEDRHLSVILEKDQLIQEAAAENNKLKEEIRGLRSHMDDLNSENAKLDAELIQYRQDLNEVIVIKDCQQKQLLDVQLLKNKELKNECAKLEEKLKGSEEARQSLQRSSDALQGDKQCLSTELESLKRQVAALQEEGTLGAQLKDKEEEVQRLNAALSSSQKRAAELEEELVCVQKEATRKVSEIEDKLKKELKHLHHDAGIMRNETETAEERVAELARDLVEMEQKLLMVTKENKDLMAQIQSFGRSMSSLQDSRDHATEELGDLKKKYEAVLKELTQLKEHKELRRESDVLSQAAFPLTTTENSLSHLEKLNQQLISKDEQLLHLSSQLEDCHNKVQSFSKAMTSLQTERDHLWSELEKFRKLEEGKQRAAAPSSPSSPAEMQSLKKAMSSLQNDRDRLLKELKNLQQQYLQMNQEVTNLRPLKAQLQEYQEQTKTLQMMKEKLRQENLNWQQELHQLRMEKDAWELHERQMKEQYIMAVSDKDQQLNHLQSLLRASSQTEILSTQSQRQVSLETSASLDGSQNLIHEAETLRTQLNDTLKENHQKELRIQQLNMRLSQLLEEKNILSIQLSDANQSLRENQHHYGDLFRHCAVLERQVHQLQARGPTNVDVAPGAPQEMSEVCRNSDPEATVEPQPSLAEVCSAQQELGELKKLLEEERDQRLTAENALSLAEEQIRRLQEHSEWDSARTPIIGACGSHETAVLIDLPGSTCRRTRSGAGWKRVLRSLCHSRTRVPLLAAMYLLMVHVLLILCFTGHL", "length": 3860, "header": "tr|A0A9J7JNR0-1|A0A9J7JGC2_CRIGR Computationally mapped isoform of Golgin subfamily B member 1 isoform X11 OS=Cricetulus griseus OX=10029 GN=Golgb1 PE=4 SV=1 CANONICAL=A0A9J7JGC2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JNR6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGC2/entry#A0A9J7JNR6-1", "sequence": { "sequence": "MLSRLSGLANIVIHELSGNNYGQNMTAPLEAASDMELDNSIQEDILQRLADSEKLVVELKDIIKQKDVQLQQKDEVLQEERKAADIKIKKIKLHAKAKFTALNKHVEELKAQGGTASPTEQQAEEQPSKLDKSSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSKTQAEQAAQLDKSSAEMEKFVLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMLQEKKELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMLQEKKELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLSSMQQVVREKDARFETQVRLHEDELLQLVTQSDVETEMQQKLRVMQRKLEEHEEALLGRAQVVELLQQELTLAEQKNEALSHQLLQLEAENGTLKNTIETERQESKILMEKVELEVAERKLSFHNQQEEMHQLQGKLEQASQAQAELETQYSALEQRHRAEMEEKDAYILSLQKTEQELQSACDALKEENSELLREKSEQAAESARAIEQLEDQLQQKSKEIRQFVDIPNLQKHETASQTSLPDVYNEGTQAVTEENITSLQKRVMELEDEKRALLLCTVELEELKAENEKLSSQITLLETKNRSGETDGAVCEVPDVTQFSKSDSLTKKSGQDDPENTFSQKHKELSVLLVEMTEAQEEIAFLKSQLQGKRSDGNSEVLDQKEVKVLESEGPLSVTAGDSPFMLNEESSVPAAEKEEQDSTKDQPPPSEAGSPNEAAVDLKSSSVPDACQCHQSELESLKTQIFKLETSLHKAEEIHEKNLDEKDKEISSLTELIDELKKKAEDAHSTLTVLSEERDQLLSRIKELDVLAELRAQVQELQSSLAEAEKQRGLDYESQKTQHNLLTEQIHSLSIEAKSKDVKIEALQKELDDVQIQCSQQDTQIKSLQSQLQKKESEVIERAEHVKNISEKVEELSQALSQKELEVARMDQLLVEKKKDVETLQQTIQEKDQQVTELSFSMTEKMVQLNEEKFSLGVEIKTLKEQLNVLSRAEEAKKEQVEESHGVISNHSHDESSPVGLLSKEALQQELELLRKESELRKRKLHAALIHRKELLQKVGTLEEELAKAKEECRKEIAHGESEKRKLEPYRENKDDPEKCETSKCREIEVSLKQTISEKEVELQHIKRDLKERMAAEEELQAVVQQMNQNLQDKTKQIDLLQVEISENQATIQKLTTGAKDAGDSAAPVKETHVSSPPSAGSGEHWTADLEGKTSDLEKEKEQLQKKLQEALTSRKVILKKAQEREKHLKEELGKQKDAYSLLQEQFDKQSKEIENMGNQLRQLQIEARESSDSKLPGTNQWEPGLPIQGFEEVSLEDTEQQPAQPAAEFDLHITQPSCPGDAEALQATVSVAQIKAQLIEMEVEKEELELKVSSTASELTKKSEEVFLLQEQISKQGLEIQTWKTASHEAEAHAEILQHELESSKLKLAGLEHLKTLQHELDELQKHMAQKEEEVSYLSGQLSEKEETLTKVQAEMLEQEHLIKALHTQMDMHAKDYEERLKQSQLELCQLKQKSEQVEDETKAKQQIHRKLQAALISRKEALKENKTLQEELSSARDAVEHLTKSLADVESQISVQNKEKDAFLRKLALLQEERDKLIVEVDRSLLENQSLGGSCESLKLALEGLTEDKEKLMKELESLRCSKMAEITEWQEKHKELQKEYEVLLQSYENVSNEAERIQHVVESVRQEKQELYGKLRSIETDKKETEKQLQDAEHEMEEMKEKMRKFAKSKQQKILELEEENDRLRAEAQPIGGAKESMEALLSSNSSLKEELERVKLEYKTLSKEFEALMAEKDILSEEIQGLKHQVEDGILKQASLEATEKSNEQKEETQAMVGKSQEQDSQSGSVKVEVPEGILSVTSAKPGISETFRSHDDINNYLQQLDQLNGRIAELEMEKQCDRELNRTLENEKNALLSQISAKDGELKLLEEEVAKINTLNQQIQEELSRVTKLKEMAEEEKDDLEERLMNQLAELNGSIGNYYQDVTDAQIKNEQLESEMQNLKKCMSELEEEKQQLVKEKTKVETEIRKEYLEKIQGAQKGAGNKSHAKELQELLKEKQQEVKQLQKDCIRYQEKISALEKTVKALEYVQTESQKDLDVTKGNLAQAVEHHKQAQEELSSFKVLLDDTQSEAARVLADNLRLKKELQSNKEAIKNQMKQKDEDLVRRLEQAEEKFLKEKINMQEKLDALHGEKTRVEDTLAEIQVTVAKKDKEMKQLQESLDSTMAQLAAFTKSMSSLQDDRDRVIDEAKKWEQKFGDAIQTKEKEIRLKEENCMALKDQLHQMSIHTEELKTNISRLEHDKEIWGSKAQTELQHQQKVCDTLQGENKELVSQLEETRQLYHNSMNEVAKLESELKDLKDQSSDLNNSLEKCKDHKEKLEGIIKQQEAEIQNCKFSYEQLETDLKASRELTGRLHDEIHMKEQKIVSLLSGKEEAVQVAVAELCQQHNKEIKELEHLLSQEEEENATLEEDNKKAVEKTNQLMETLENIRKENLEQKAQLNSFFKSMASLQDDRDRIISDYQQLEDRHLSVILEKDQLIQEAAAENNKLKEEIRGLRSHMDDLNSENAKLDAELIQYRQDLNEVIVIKDCQQKQLLDVQLLKNKELKNECAKLEEKLKGSEEARQSLQRSSDALQGDKQCLSTELESLKRQVAALQEEGTLGAQLKDKEEEVQRLNAALSSSQKRAAELEEELVCVQKEATRKVSEIEDKLKKELKHLHHDAGIMRNETETAEERVAELARDLVEMEQKLLMVTKENKDLMAQIQSFGRSMSSLQDSRDHATEELGDLKKKYEAVLKELTQLKEHKELRRESDVLSQAAFPLTTTENSLSHLEKLNQQLISKDEQLLHLSSQLEDCHNKVQSFSKAMTSLQTERDHLWSELEKFRKLEEGKQRAAAPSSPSSPAEMQSLKKAMSSLQNDRDRLLKELKNLQQQYLQMNQEVTNLRPLKAQLQEYQEQTKTLQMMKEKLRQENLNWQQELHQLRMEKDAWELHERQMKEQYIMAVSDKDQQLNHLQSLLRASSQTEILSTQSQRQVSLETSASLDGSQNLIHEAETLRTQLNDTLKENHQKELRIQQLNMRLSQLLEEKNILSIQLSDANQSLRENQHHYGDLFRHCAVLERQVHQLQARGPTNVDVAPGAPQEMSEVCRNSDPEATVEPQPSLAEVCSAQQELGELKKLLEEERDQRLTAENALSLAEEQIRRLQEHSEWDSARTPIIGACGSHETAVLIDLPGSTCRRTRSGAGWKRVLRSLCHSRTRVPLLAAMYLLMVHVLLILCFTGHL", "length": 3656, "header": "tr|A0A9J7JNR6-1|A0A9J7JGC2_CRIGR Computationally mapped isoform of Golgin subfamily B member 1 isoform X11 OS=Cricetulus griseus OX=10029 GN=Golgb1 PE=4 SV=1 CANONICAL=A0A9J7JGC2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JPE6-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGC2/entry#A0A9J7JPE6-1", "sequence": { "sequence": "MLSRLSGLANIVIHELSGNNYGQNMTAPLEAASDMELDNSIQEDILQRLADSEKLVVELKDIIKQKDVQLQQKDEVLQEERKAADIKIKKIKLHAKAKFTALNKHVEELKAQGGTASPTEQQAEEQPSKLDKSSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELIKTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEEFILMKQQLQKKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSKTQAEQAAQLDKSSAEMEKFVLMLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMLQEKKELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMLQEKKELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLSSMQQVVREKDARFETQVRLHEDELLQLVTQSDVETEMQQKLRVMQRKLEEHEEALLGRAQVVELLQQELTLAEQKNEALSHQLLQLEAENGTLKNTIETERQESKILMEKVELEVAERKLSFHNQQEEMHQLQGKLEQASQAQAELETQYSALEQRHRAEMEEKDAYILSLQKTEQELQSACDALKEENSELLREKSEQAAESARAIEQLEDQLQQKSKEIRQFVDIPNLQKHETASQTSLPDVYNEGTQAVTEENITSLQKRVMELEDEKRALLLCTVELEELKAENEKLSSQITLLETKNRSGETDGAVCEVPDVTQFSKSDSLTKKSGQDDPENTFSQKHKELSVLLVEMTEAQEEIAFLKSQLQGKRSDGNSEVLDQKEVKVLESEGPLSVTAGDSPFMLNEESSVPAAEKEEQDSTKDQPPPSEAGSPNEAAVDLKSSSVPDACQCHQSELESLKTQIFKLETSLHKAEEIHEKNLDEKDKEISSLTELIDELKKKAEDAHSTLTVLSEERDQLLSRIKELDVLAELRAQVQELQSSLAEAEKQRGLDYESQKTQHNLLTEQIHSLSIEAKSKDVKIEALQKELDDVQIQCSQQDTQIKSLQSQLQKKESEVIERAEHVKNISEKVEELSQALSQKELEVARMDQLLVEKKKDVETLQQTIQEKDQQVTELSFSMTEKMVQLNEEKFSLGVEIKTLKEQLNVLSRAEEAKKEQVEESHGVISNHSHDESSPVGLLSKEALQQELELLRKESELRKRKLHAALIHRKELLQKVGTLEEELAKAKEECRKEIAHGESEKRKLEPYRENKDDPEKCETSKCREIEVSLKQTISEKEVELQHIKRDLKERMAAEEELQAVVQQMNQNLQDKTKQIDLLQVEISENQATIQKLTTGAKDAGDSAAPVKETHVSSPPSAGSGEHWTADLEGKTSDLEKEKEQLQKKLQEALTSRKVILKKAQEREKHLKEELGKQKDAYSLLQEQFDKQSKEIENMGNQLRQLQIEARESSDSKLPGTNQWEPGLPIQGFEEVSLEDTEQQPAQPAAEFDLHITQPSCPGDAEALQATVSVAQIKAQLIEMEVEKEELELKVSSTASELTKKSEEVFLLQEQISKQGLEIQTWKTASHEAEAHAEILQHELESSKLKLAGLEHLKTLQHELDELQKHMAQKEEEVSYLSGQLSEKEETLTKVQAEMLEQEHLIKALHTQMDMHAKDYEERLKQSQLELCQLKQKSEQVEDETKAKQQIHRKLQAALISRKEALKENKTLQEELSSARDAVEHLTKSLADVESQISVQNKEKDAFLRKLALLQEERDKLIVEVDRSLLENQSLGGSCESLKLALEGLTEDKEKLMKELESLRCSKMAEITEWQEKHKELQKEYEVLLQSYENVSNEAERIQHVVESVRQEKQELYGKLRSIETDKKETEKQLQDAEHEMEEMKEKMRKFAKSKQQKILELEEENDRLRAEAQPIGGAKESMEALLSSNSSLKEELERVKLEYKTLSKEFEALMAEKDILSEEIQGLKHQVEDGILKQASLEATEKSNEQKEETQAMVGKSQEQDSQSGSVKVEVPEGILSVTSAKPGISETFRSHDDINNYLQQLDQLNGRIAELEMEKQCDRELNRTLENEKNALLSQISAKDGELKLLEEEVAKINTLNQQIQEELSRVTKLKEMAEEEKDDLEERLMNQLAELNGSIGNYYQDVTDAQIKNEQLESEMQNLKKCMSELEEEKQQLVKEKTKVETEIRKEYLEKIQGAQKGAGNKSHAKELQELLKEKQQEVKQLQKDCIRYQEKISALEKTVKALEYVQTESQKDLDVTKGNLAQAVEHHKQAQEELSSFKVLLDDTQSEAARVLADNLRLKKELQSNKEAIKNQMKQKDEDLVRRLEQAEEKFLKEKINMQEKLDALHGEKTRVEDTLAEIQVTVAKKDKEMKQLQESLDSTMAQLAAFTKSMSSLQDDRDRVIDEAKKWEQKFGDAIQTKEKEIRLKEENCMALKDQLHQMSIHTEELKTNISRLEHDKEIWGSKAQTELQHQQKVCDTLQGENKELVSQLEETRQLYHNSMNEVAKLESELKDLKDQSSDLNNSLEKCKDHKEKLEGIIKQQEAEIQNCKFSYEQLETDLKASRELTGRLHDEIHMKEQKIVSLLSGKEEAVQVAVAELCQQHNKEIKELEHLLSQEEEENATLEEDNKKAVEKTNQLMETLENIRKENLEQKAQLNSFFKSMASLQDDRDRIISDYQQLEDRHLSVILEKDQLIQEAAAENNKLKEEIRGLRSHMDDLNSENAKLDAELIQYRQDLNEVIVIKDCQQKQLLDVQLLKNKELKNECAKLEEKLKGSEEARQSLQRSSDALQGDKQCLSTELESLKRQVAALQEEGTLGAQLKDKEEEVQRLNAALSSSQKRAAELEEELVCVQKEATRKVSEIEDKLKKELKHLHHDAGIMRNETETAEERVAELARDLVEMEQKLLMVTKENKDLMAQIQSFGRSMSSLQDSRDHATEELGDLKKKYEAVLKELTQLKEHKELRRESDVLSQAAFPLTTTENSLSHLEKLNQQLISKDEQLLHLSSQLEDCHNKVQSFSKAMTSLQTERDHLWSELEKFRKLEEGKQRAAAPSSPSSPAEMQSLKKAMSSLQNDRDRLLKELKNLQQQYLQMNQEVTNLRPLKAQLQEYQEQTKTLQMMKEKLRQENLNWQQELHQLRMEKDAWELHERQMKEQYIMAVSDKDQQLNHLQSLLRASSQTEILSTQSQRQVSLETSASLDGSQNLIHEAETLRTQLNDTLKENHQKELRIQQLNMRLSQLLEEKNILSIQLSDANQSLRENQHHYGDLFRHCAVLERQVHQLQARGPTNVDVAPGAPQEMSEVCRNSDPEATVEPQPSLAEVCSAQQELGELKKLLEEERDQRLTAENALSLAEEQIRRLQEHSEWDSARTPIIGACGSHETAVLIDLPGSTCRRTRSGAGWKRVLRSLCHSRTRVPLLAAMYLLMVHVLLILCFTGHL", "length": 3824, "header": "tr|A0A9J7JPE6-1|A0A9J7JGC2_CRIGR Computationally mapped isoform of Golgin subfamily B member 1 isoform X11 OS=Cricetulus griseus OX=10029 GN=Golgb1 PE=4 SV=1 CANONICAL=A0A9J7JGC2-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K8W9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGC2/entry#A0A9J7K8W9-1", "sequence": { "sequence": "MLSRLSGLANIVIHELSGNNYGQNMTAPLEAASDMELDNSIQEDILQRLADSEKLVVELKDIIKQKDVQLQQKDEVLQEERKAADIKIKKIKLHAKAKFTALNKHVEELKAQGGTASPTEQQAEEQPSKLDKSSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELIKTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEEFILMKQQLQKKEELINTLQTQLSQTQAEQAAQLDKRSAEMEEFVLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSKTQAEQAAQLDKSSAEMEKFVLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMLQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMLQEKKELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLKTQHSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMIQEKEELINTLQTQLSQTQAEQAAQLDKSSAEMEKFVLMLQEKKELINTLQTQLSQTQAEQAAQLDKSSAEMEKFFLMKQQLQEKEELINTLQTQLSQTQAEQAAQLSSMQQVVREKDARFETQVRLHEDELLQLVTQSDVETEMQQKLRVMQRKLEEHEEALLGRAQVVELLQQELTLAEQKNEALSHQLLQLEAENGTLKNTIETERQESKILMEKVELEVAERKLSFHNQQEEMHQLQGKLEQASQAQAELETQYSALEQRHRAEMEEKDAYILSLQKTEQELQSACDALKEENSELLREKSEQAAESARAIEQLEDQLQQKSKEIRQFVDIPNLQKHETASQTSLPDVYNEGTQAVTEENITSLQKRVMELEDEKRALLLCTVELEELKAENEKLSSQITLLETKNRSGETDGAVCEVPDVTQFSKSDSLTKKSGQDDPENTFSQKHKELSVLLVEMTEAQEEIAFLKSQLQGKRSDGNSEVLDQKEVKVLESEGPLSVTAGDSPFMLNEESSVPAAEKEEQDSTKDQPPPSEAGSPNEAAVDLKSSSVPDACQCHQSELESLKTQIFKLETSLHKAEEIHEKNLDEKDKEISSLTELIDELKKKAEDAHSTLTVLSEERDQLLSRIKELDVLAELRAQVQELQSSLAEAEKQRGLDYESQKTQHNLLTEQIHSLSIEAKSKDVKIEALQKELDDVQIQCSQQDTQIKSLQSQLQKKESEVIERAEHVKNISEKVEELSQALSQKELEVARMDQLLVEKKKDVETLQQTIQEKDQQVTELSFSMTEKMVQLNEEKFSLGVEIKTLKEQLNVLSRAEEAKKEQVEESHGVISNHSHDESSPVGLLSKEALQQELELLRKESELRKRKLHAALIHRKELLQKVGTLEEELAKAKEECRKEIAHGESEKRKLEPYRENKDDPEKCETSKCREIEVSLKQTISEKEVELQHIKRDLKERMAAEEELQAVVQQMNQNLQDKTKQIDLLQVEISENQATIQKLTTGAKDAGDSAAPVKETHVSSPPSAGSGEHWTADLEGKTSDLEKEKEQLQKKLQEALTSRKVILKKAQEREKHLKEELGKQKDAYSLLQEQFDKQSKEIENMGNQLRQLQIEARESSDSKLPGTNQWEPGLPIQGFEEVSLEDTEQQPAQPAAEFDLHITQPSCPGDAEALQATVSVAQIKAQLIEMEVEKEELELKVSSTASELTKKSEEVFLLQEQISKQGLEIQTWKTASHEAEAHAEILQHELESSKLKLAGLEHLKTLQHELDELQKHMAQKEEEVSYLSGQLSEKEETLTKVQAEMLEQEHLIKALHTQMDMHAKDYEERLKQSQLELCQLKQKSEQVEDETKAKQQIHRKLQAALISRKEALKENKTLQEELSSARDAVEHLTKSLADVESQISVQNKEKDAFLRKLALLQEERDKLIVEVDRSLLENQSLGGSCESLKLALEGLTEDKEKLMKELESLRCSKMAEITEWQEKHKELQKEYEVLLQSYENVSNEAERIQHVVESVRQEKQELYGKLRSIETDKKETEKQLQDAEHEMEEMKEKMRKFAKSKQQKILELEEENDRLRAEAQPIGGAKESMEALLSSNSSLKEELERVKLEYKTLSKEFEALMAEKDILSEEIQGLKHQVEDGILKQASLEATEKSNEQKEETQAMVGKSQEQDSQSGSVKVEVPEGILSVTSAKPGISETFRSHDDINNYLQQLDQLNGRIAELEMEKQCDRELNRTLENEKNALLSQISAKDGELKLLEEEVAKINTLNQQIQEELSRVTKLKEMAEEEKDDLEERLMNQLAELNGSIGNYYQDVTDAQIKNEQLESEMQNLKKCMSELEEEKQQLVKEKTKVETEIRKEYLEKIQGAQKGAGNKSHAKELQELLKEKQQEVKQLQKDCIRYQEKISALEKTVKALEYVQTESQKDLDVTKGNLAQAVEHHKQAQEELSSFKVLLDDTQSEAARVLADNLRLKKELQSNKEAIKNQMKQKDEDLVRRLEQAEEKFLKEKINMQEKLDALHGEKTRVEDTLAEIQVTVAKKDKEMKQLQESLDSTMAQLAAFTKSMSSLQDDRDRVIDEAKKWEQKFGDAIQTKEKEIRLKEENCMALKDQLHQMSIHTEELKTNISRLEHDKEIWGSKAQTELQHQQKVCDTLQGENKELVSQLEETRQLYHNSMNEVAKLESELKDLKDQSSDLNNSLEKCKDHKEKLEGIIKQQEAEIQNCKFSYEQLETDLKASRELTGRLHDEIHMKEQKIVSLLSGKEEAVQVAVAELCQQHNKEIKELEHLLSQEEEENATLEEDNKKAVEKTNQLMETLENIRKENLEQKAQLNSFFKSMASLQDDRDRIISDYQQLEDRHLSVILEKDQLIQEAAAENNKLKEEIRGLRSHMDDLNSENAKLDAELIQYRQDLNEVIVIKDCQQKQLLDVQLLKNKELKNECAKLEEKLKGSEEARQSLQRSSDALQGDKQCLSTELESLKRQVAALQEEGTLGAQLKDKEEEVQRLNAALSSSQKRAAELEEELVCVQKEATRKVSEIEDKLKKELKHLHHDAGIMRNETETAEERVAELARDLVEMEQKLLMVTKENKDLMAQIQSFGRSMSSLQDSRDHATEELGDLKKKYEAVLKELTQLKEHKELRRESDVLSQAAFPLTTTENSLSHLEKLNQQLISKDEQLLHLSSQLEDCHNKVQSFSKAMTSLQTERDHLWSELEKFRKLEEGKQRAAAPSSPSSPAEMQSLKKAMSSLQNDRDRLLKELKNLQQQYLQMNQEVTNLRPLKAQLQEYQEQTKTLQMMKEKLRQENLNWQQELHQLRMEKDAWELHERQMKEQYIMAVSDKDQQLNHLQSLLRASSQTEILSTQSQRQVSLETSASLDGSQNLIHEAETLRTQLNDTLKENHQKELRIQQLNMRLSQLLEEKNILSIQLSDANQSLRENQHHYGDLFRHCAVLERQVHQLQARGPTNVDVAPGAPQEMSEVCRNSDPEATVEPQPSLAEVCSAQQELGELKKLLEEERDQRLTAENALSLAEEQIRRLQEHSEWDSARTPIIGACGSHETAVLIDLPGSTCRRTRSGAGWKRVLRSLCHSRTRVPLLAAMYLLMVHVLLILCFTGHL", "length": 3827, "header": "tr|A0A9J7K8W9-1|A0A9J7JGC2_CRIGR Computationally mapped isoform of Golgin subfamily B member 1 isoform X11 OS=Cricetulus griseus OX=10029 GN=Golgb1 PE=4 SV=1 CANONICAL=A0A9J7JGC2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FTQ9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTQ9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7FTQ9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7FTQ9" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100764942", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764942", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 3, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JGC2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGC2" } ], "pmid": "" }, { "name": "cis-Golgi network", "id": "GO:0005801", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005801", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JGC2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGC2" } ], "pmid": "" }, { "name": "endoplasmic reticulum-Golgi intermediate compartment", "id": "GO:0005793", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005793", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JGC2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JGC2" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 1119, "end_pos": 1121, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1165, "end_pos": 1167, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1489, "end_pos": 1491, "annotation": "n_glycosylation_sequon" }, { "start_pos": 1591, "end_pos": 1593, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2128, "end_pos": 2130, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2191, "end_pos": 2193, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2253, "end_pos": 2255, "annotation": "n_glycosylation_sequon" }, { "start_pos": 2349, "end_pos": 2351, 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record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027255448", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027255448" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JFN0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFN0" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Aunip", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFN0", "locus": {} } ], "crossref": [ { "id": "A0A9J7JFN0", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JFN0", "database": "AlphaFoldDB", "categories": [] }, { "id": "100763527", "url": "https://www.ncbi.nlm.nih.gov/gene/100763527", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029286", 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"categories": [ "Protein Classification" ] }, { "id": "PF15334", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15334", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027255448", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027255448", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GN52", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GN52", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GN52-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GN52-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GP94", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GP94", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GP94-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GP94-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JFN0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFN0", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JFN0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFN0-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKARGPEEEACGVWLDAAALKRRKVQTHLVKPGTKMLTLLPRERKPGISFTQRRGTRQTSIASFVTLQPGMANDNRKSILTFKENQINKECKGTQLDCLVQRLGDDCLVSPLATSTPADIQEAGHSPPSPQISSCHSLETTPSLTTMSLPQPDILMGAGSNEASLASSFTQYLESSCLDQREARRKREWLHGSKTNCPGMGSHVRPSSGKCCQTLDKAELEGKGPAKENRKAPVHLQTYKFESWSRKKPMLVTKSPCPLSVFSWDNERNDRDSWSQLFTEDSQGQKVIAHNTKMPFQDVTNVSNQGLGQFPDSPQAQCQDGPTLLDLQSNLLFTQDSEGNQVIRH", "length": 345, "header": "tr|A0A9J7JFN0-1|A0A9J7JFN0_CRIGR Isoform 1 of Aurora kinase A and ninein-interacting protein isoform X2 OS=Cricetulus griseus OX=10029 GN=Aunip PE=4 SV=1 CANONICAL=A0A9J7JFN0-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GN52-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFN0/entry#A0A9J7GN52-1", "sequence": { "sequence": "MLTLLPRERKPGISFTQRRGTRQTSIASFVTLQPGMANDNRKSILTFKENQINKECKGTQLDCLVQRLGDDCLVSPLATSTPADIQEAGHSPPSPQISSCHSLETTPSLTTMSLPQPDILMGAGSNEASLASSFTQYLESSCLDQREARRKREWLHGSKTNCPGMGSHVRPSSGKCCQTLDKAELEGKGPAKENRKAPVHLQTYKFESWSRKKPMLVTKSPCPLSVFSWDNERNDRDSWSQLFTEDSQGQKVIAHNTKMPFQDVTNVSNQGLGQFPDSPQAQCQDGPTLLDLQSNLLFTQDSEGNQVIRH", "length": 310, "header": "tr|A0A9J7GN52-1|A0A9J7JFN0_CRIGR Computationally mapped isoform of Aurora kinase A and ninein-interacting protein isoform X2 OS=Cricetulus griseus OX=10029 GN=Aunip PE=4 SV=1 CANONICAL=A0A9J7JFN0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GP94-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFN0/entry#A0A9J7GP94-1", "sequence": { "sequence": "MKARGPEEEACGVWLDAAALKRRKTHLVKPGTKMLTLLPRERKPGISFTQRRGTRQTSIASFVTLQPGMANDNRKSILTFKENQINKECKGTQLDCLVQRLGDDCLVSPLATSTPADIQEAGHSPPSPQISSCHSLETTPSLTTMSLPQPDILMGAGSNEASLASSFTQYLESSCLDQREARRKREWLHGSKTNCPGMGSHVRPSSGKCCQTLDKAELEGKGPAKENRKAPVHLQTYKFESWSRKKPMLVTKSPCPLSVFSWDNERNDRDSWSQLFTEDSQGQKVIAHNTKMPFQDVTNVSNQGLGQFPDSPQAQCQDGPTLLDLQSNLLFTQDSEGNQVIRH", "length": 343, "header": "tr|A0A9J7GP94-1|A0A9J7JFN0_CRIGR Computationally mapped isoform of Aurora kinase A and ninein-interacting protein isoform X2 OS=Cricetulus griseus OX=10029 GN=Aunip PE=4 SV=1 CANONICAL=A0A9J7JFN0-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JFN0-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFN0/entry#A0A9J7JFN0-1", "sequence": { "sequence": "MKARGPEEEACGVWLDAAALKRRKVQTHLVKPGTKMLTLLPRERKPGISFTQRRGTRQTSIASFVTLQPGMANDNRKSILTFKENQINKECKGTQLDCLVQRLGDDCLVSPLATSTPADIQEAGHSPPSPQISSCHSLETTPSLTTMSLPQPDILMGAGSNEASLASSFTQYLESSCLDQREARRKREWLHGSKTNCPGMGSHVRPSSGKCCQTLDKAELEGKGPAKENRKAPVHLQTYKFESWSRKKPMLVTKSPCPLSVFSWDNERNDRDSWSQLFTEDSQGQKVIAHNTKMPFQDVTNVSNQGLGQFPDSPQAQCQDGPTLLDLQSNLLFTQDSEGNQVIRH", "length": 345, "header": "tr|A0A9J7JFN0-1|A0A9J7JFN0_CRIGR Isoform 1 of Aurora kinase A and ninein-interacting protein isoform X2 OS=Cricetulus griseus OX=10029 GN=Aunip PE=4 SV=1 CANONICAL=A0A9J7JFN0-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GN52", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GN52" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7GN52", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GN52" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100763527", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100763527", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A5G2R431-1", "protein_name": "Aurora kinase A and ninein interacting protein", "gene_name": "AUNIP", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MRRRGPEEEEEACGVWLDAAALKRRKAQTHLIKSSTKMLTLFPGERKTKISFTQRSHPPAGTRQTSIASFFTLQPGKTNGGDQKNVSSHIESQANKESKEDAVQLDHLIQGLEDDCMAPPLATSTPADIQEATRLSPKSLRTNCHHETGIPCLTVLSLFQPDTLVHAKEGKASLACSFTQDMKNPCLLDQKEGEDSSWKRDWLHGSKKNNYQSVERDSKTPGRKRHQLLDKTNLENVSSKTNSQSPVLQTYKEFWTGADTAVKQSPCPPPVFSWDSEKNDKDSWSQLFTEDSQGQRVIAHNSRAPFRDVTNDQNQGLGQLPNSPWAQGQDRTTQLNLQPDLLFTQDSEVQALARQDCCGRFVIERQKHLW", "length": 370 }, "evidence": [ { "id": "A0A9J7JFN0", "url": "https://omabrowser.org/oma/group/A0A9J7JFN0/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A4IFU8-1", "protein_name": "Aurora kinase A- and ninein-interacting protein", "gene_name": "AUNIP", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MRRRGPEKEEEACGVWLDAAALKRRKTQTQLIKSSTKMLTLLPGERKAKISFTQRSCPSAGTRQTSIASFLTSQQGKTNGADQRSVSSHTESQTNKESKEDATQLEHLTQGLRADFMAPPLATSTPADIQEARLSPQSLKASCQHGIGTPYLTVPCLFRPDTSVCAGASKASLACSFAHDLESSCLLDQKEGEDSSCEREWLQGSKKNNYQSVERHSKTTGHKGHQLLDKTNLENVSAKRSRQAPVLQTYKDSRRGANMKAVKQSSCPIPGFSWDSERNDKDSWSQLFTEDSQGQRVIAHNSRAPFRDVTNDQNQGYGRVPNSLWAQCQDRTTQFNLQPDSLFTQDSEGNQVIRHQA", "length": 357 }, "evidence": [ { "id": "A0A9J7JFN0", "url": "https://omabrowser.org/oma/group/A0A9J7JFN0/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "D3ZUC4-1", "protein_name": "Aurora kinase A- and ninein-interacting protein", "gene_name": "Aunip", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MSRRGPEEEACGVWLDAAALKRQKMQTHLLKLGTKMLTLLPGERKPSIPFTQRRATRQTSITSFVTSQPGMANGGNQKNASSLKENQINRECKSRSQLDCLDQGLEDDCLVSPLATSTPADIREAGHSPQSSQISGCQSLETTSLTMMSFPQPVVLMGTGESKAPLASSFTQFLERSCLLDQREAKRKREGLCGSKTDCPGMGSHIRPPGGKCHQPLDKAKVEKRATAKENRQAPVHLQTYRFGSHSGKKTLLVTKSPCPLSVFSWDIDRKDRDSWSQLFTEDSQGHQVIAHSTKMPFQDVTNARNQGSGQFPDSPQAQGQDGPTLLHLQPHLLFTQDSEGNRVIRH", "length": 347 }, "evidence": [ { "id": "A0A9J7JFN0", "url": "https://omabrowser.org/oma/group/A0A9J7JFN0/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E9Q6Z5-1", "protein_name": "Aurora kinase A- and ninein-interacting protein", "gene_name": "Aunip", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MRHRGPEEEACGVWLDAAALKRRKMQTHLIKLGTKMLPLLPGERKPNDPFTQRRGTRQTSIASFVTLQSGMASGGNQKNIFSLKENQTNKECKRTQLDCLDDGLLSPLVTSAPADIQEAGHPRSPQISGCQGLEMSSLTMMSLTQPDVLMGTGESKGPLDSSFSQYLERSCLLDQREAKRKGEGLRESKTDCPGMGSHIRPPGSKCHQPLDKAEMGKRGPTKENRQAPVHLQTYRSGSCSRKKTLLVTESPCPLSLFPWDSERSDRDSWSQLFTEDSQGQQVIAHNTKMPFRDVTNARNQGSGQFPDSPQAQGQDGPAQLHLQSYLLFTQDSEGNRVIRH", "length": 340 }, "evidence": [ { "id": "A0A9J7JFN0", "url": "https://omabrowser.org/oma/group/A0A9J7JFN0/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q9H7T9-1", "protein_name": "Aurora kinase A- and ninein-interacting protein", "gene_name": "AUNIP", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MRRTGPEEEACGVWLDAAALKRRKVQTHLIKPGTKMLTLLPGERKANIYFTQRRAPSTGIHQRSIASFFTLQPGKTNGSDQKSVSSHTESQINKESKKNATQLDHLIPGLAHDCMASPLATSTTADIQEAGLSPQSLQTSGHHRMKTPFSTELSLLQPDTPDCAGDSHTPLAFSFTEDLESSCLLDRKEEKGDSARKWEWLHESKKNYQSMEKHTKLPGDKCCQPLGKTKLERKVSAKENRQAPVLLQTYRESWNGENIESVKQSRSPVSVFSWDNEKNDKDSWSQLFTEDSQGQRVIAHNTRAPFQDVTNNWNWDLGPFPNSPWAQCQEDGPTQNLKPDLLFTQDSEGNQVIRHQF", "length": 357 }, "evidence": [ { "id": "A0A9J7JFN0", "url": "https://omabrowser.org/oma/group/A0A9J7JFN0/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 2, "go_terms": [ { "name": "spindle pole", "id": "GO:0000922", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0000922", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JFN0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFN0" } ], "pmid": "" }, { "name": "centrosome", "id": "GO:0005813", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005813", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JFN0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFN0" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "kinase activity", "id": "GO:0016301", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016301", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JFN0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFN0" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 1, "go_terms": [ { "name": "spindle organization", "id": "GO:0007051", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0007051", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JFN0", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFN0" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 301, "end_pos": 303, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 301, "end_pos": 303 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7JH81-1", "uniprot_ac": "A0A9J7JH81", "uniprot_id": "A0A9J7JH81_CRIGR", "mass": { "chemical_mass": 79934.0, "monoisotopic_mass": 79934.0 }, "refseq": { "ac": "XP_007615585", "name": "Hermansky-Pudlak syndrome 1 protein isoform X1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007615585" }, "gene_names": [ { "name": "Hps1", "type": "recommended", "evidence": [ { "id": "A0A9J7JH81", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JH81" } ] }, { "name": "Hps1", "type": "synonym", "evidence": [ { "id": "XP_007615585", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007615585" } ] } ], "protein_names": [ { "name": "Hermansky-Pudlak syndrome 1 protein isoform X1", "type": "synonym", "evidence": [ { "id": "XP_007615585", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007615585" }, { "id": "A0A9J7JH81", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JH81/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003613664.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_007615585", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007615585" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JH81", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JH81" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Hps1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JH81", "locus": {} } ], "crossref": [ { "id": "100761713", "url": "https://www.ncbi.nlm.nih.gov/gene/100761713", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR026053", "url": "https://www.ebi.ac.uk/interpro/entry/IPR026053", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043970", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043970", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043971", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043971", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR043972", "url": "https://www.ebi.ac.uk/interpro/entry/IPR043972", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100761713", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761713", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "GLVHFMY", "url": "https://omabrowser.org/oma/group/GLVHFMY/", "database": "OMA", "categories": [ "Protein Classification" ] }, { "id": "A0A9J7JH81", "url": "https://www.orthodb.org/?gene=A0A9J7JH81", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12761", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12761", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12761:SF1", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12761:SF1", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF19036", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19036", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF19037", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19037", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF19038", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19038", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_007615585", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_007615585", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7GTV1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GTV1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GTV1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GTV1-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GU03", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GU03", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GU03-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GU03-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GX03", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GX03", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7GX03-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7GX03-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JH81", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JH81", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JH81-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JH81-1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K345", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K345", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7K345-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K345-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKCVLVATEGAEVLFYWTDEEFEENLRLKFRQSENEEEELPALEDQLSTLLAPVIISSVTMLEKLSDTYTCFSTENGKHLYVLHLFGECLFIAINGDHSESEGDLRRKLCVLKYLFEVHFGLVTVDSQLIRKELRPPDLDQRARVWKHFQRLLGTYSHLREQEQSFAVEAVERLIHPQLCELSIETLERHVVQAVNSSPERGSEEALHAFLLVHCKLLAFYSSHGASTLRPADLLALILLVQDLHPTQDTTEEDDNDDSSPQSFPQRRPLSSQNIPVQQARSQSTSGPTRSSEETDTDSISLPEEYFTPAPSPGEQSSGSILWLDGGTPPTDIPQMAEGTLRGLMPHSPEPSSPQRIFLDANVKENYCPLVPHTMYCLPLWPGINMVLLTKSSSTALALVLYQLLDGFSLLEKKLKEGQEPGSALRSQPFVGDLRQKMDKFIKNRVGQEIQSSWLEFKTKAFSRSEAGSSWELLQACGKLKRQLCTIYRLSFLATAPSRGGPHLPQHLQDQAQKLMKERLLDWKDFLLVKSRRNVTMVSYLEDFPGLVHFIYVDRTTGQMVAPSLSNSEKMSSELGKGPLAAFVKAKVWALVRLARRYLQKGCTTLLFQEGDFRCSYFLWFENDMGYKLQMIEVPVLSEDSVPIGVLGGDYYRKLLRYYSKSRPSEPVRCYELLTLHLSVIPTDLLVQQASQLARRLGEASRVTLP", "length": 706, "header": "tr|A0A9J7JH81-1|A0A9J7JH81_CRIGR Isoform 1 of Hermansky-Pudlak syndrome 1 protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Hps1 PE=4 SV=1 CANONICAL=A0A9J7JH81-1" }, "isoforms": [ { "isoform_ac": "A0A9J7GTV1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JH81/entry#A0A9J7GTV1-1", "sequence": { "sequence": "MKCVLVATEGAEVLFYWTDEEFEENLRLKFRQSENEEEELPALEDQLSTLLAPVIISSVTMLEKLSDTYTCFSTENGKHLYVLHLFGECLFIAINGDHSESEGDLRRKLCVLKYLFEVHFGLVTVDSQLIRKELRPPDLDQRARVWKHFQRLLGTYSHLREQEQSFAVEAVERLIHPQLCELSIETLERHVVQAVNSSPERGSEEALHAFLLVHCKLLAFYSSHGASTLRPADLLALILLVQDLHPTQDTTEEDDNDDSSPQSFPQRRPLSSQNIPVQQARSQSTSGPTRSSEETDTDSISLPEEYFTPAPSPGEQSSGSILWLDGGTPPTDIPQMAEGTLRGLMPHSPEPSSPQRIFLDANVKENYCPLVPHTMYCLPLWPGINMVLLTKSSSTALALVLYQLLDGFSLLEKKLKEGQEPGSALRSQPFVGDLRQKMDKFIKNRVGQEIQSSWLEFKTKAFSRSEAGSSWELLQACGKLKRQLCTIYRLSFLATAPSRGGPHLPQHLQDQAQKLMKERLLDWKDFLLVKSRRNVTMVSYLEDFPGLVHFIYVDRTTGQMVAPSLSNSEKMSSELGKGPLAAFVKAKVWALVRLARRYLQKGCTTLLFQEGDFRCSYFLWFENDMGYKLQMIEVPVLSEDSVPIGVLGGDYYRHSQQLRLFPSISGSPGPLRGHR", "length": 675, "header": "tr|A0A9J7GTV1-1|A0A9J7JH81_CRIGR Computationally mapped isoform of Hermansky-Pudlak syndrome 1 protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Hps1 PE=4 SV=1 CANONICAL=A0A9J7JH81-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GU03-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JH81/entry#A0A9J7GU03-1", "sequence": { "sequence": "MKCVLVATEGAEVLFYWTDEEFEENLRLKFRQSENEEEELPALEDQLSTLLAPVIISSVTMLEKLSDTYTCFSTENGKHLYVLHLFGECLFIAINGDHSESEGDLRRKLCVLKYLFEVHFGLVTVDSQLIRKELRPPDLDQRARVWKHFQRLLGTYSHLREQEQSFAVEAVERLIHPQLCELSIETLERHVVQAVNSSPERGSEEALHAFLLVHCKLLAFYSSHGASTLRPADLLALILLVQDLHPTQDTTEEDDNDDSSPQSFPQRRPLSSQNIPVQQARSQSTSGPTRSSEETDTDSISLPEEYFTPAPSPGEQSSGNPTNHSCITFRLFTTAQHGSRAWKSSVGGLPQVLGNEGPT", "length": 359, "header": "tr|A0A9J7GU03-1|A0A9J7JH81_CRIGR Computationally mapped isoform of Hermansky-Pudlak syndrome 1 protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Hps1 PE=4 SV=1 CANONICAL=A0A9J7JH81-1" }, "locus": {} }, { "isoform_ac": "A0A9J7GX03-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JH81/entry#A0A9J7GX03-1", "sequence": { "sequence": "MKCVLVATEGAEVLFYWTDEEFEENLRLKFRQSENEEEELPALEDQLSTLLAPVIISSVTMLEKLSDTYTCFSTENGKHLYVLHLFGECLFIAINGDHSESEGDLRRKLCVLKYLFEVHFGLVTVDSQLIRKELRPPDLDQRARVWKHFQRLLGTYSHLREQEQSFAVEAVERLIHPQLCELSIETLERHVVQAVNSSPERGSEEALHAFLLVHCKLLAFYSSHGASTLRPADLLALILLVQDLHPTQDTTEEDDNDDSSPQSFPQRRPLSSQNIPVQQARSQSTSGPTRSSEETDTDSISLPEEYFTPAPSPGEQSSGSILWLDGGTPPTDIPQMAEGTLRGLMPHSPEPSSPQRIFLDANVKENYCPLVPHTMYCLPLWPGINMVLLTKSSSTALALVLYQLLDGFSLLEKKLKEGQEPGSALRSQPFVGDLRQKMDKFIKNRVGQEIQSSWLEFKTKAFSRSEAGSSWELLQACGKLKRQLCTIYRLSFLATAPSRGGPHLPQHLQDQAQKLMKERLLDWKDFLLVKSRRNVTMVSYLEDFPGLVHFIYVDRTTGQMVAPSLSNSEKMSSELGKGPLAAFVKAKVWALVRLARRYLQKGCTTLLFQEGDFRCSYFLWFENDMGYKLQMIEVPVLSEDSVPIGVLGGDYYRTQWAGGCEYPVGPTSRAPEQLAPSREGEDLRASRTKATGEKERAVCPCI", "length": 702, "header": "tr|A0A9J7GX03-1|A0A9J7JH81_CRIGR Computationally mapped isoform of Hermansky-Pudlak syndrome 1 protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Hps1 PE=4 SV=1 CANONICAL=A0A9J7JH81-1" }, "locus": {} }, { "isoform_ac": "A0A9J7JH81-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JH81/entry#A0A9J7JH81-1", "sequence": { "sequence": "MKCVLVATEGAEVLFYWTDEEFEENLRLKFRQSENEEEELPALEDQLSTLLAPVIISSVTMLEKLSDTYTCFSTENGKHLYVLHLFGECLFIAINGDHSESEGDLRRKLCVLKYLFEVHFGLVTVDSQLIRKELRPPDLDQRARVWKHFQRLLGTYSHLREQEQSFAVEAVERLIHPQLCELSIETLERHVVQAVNSSPERGSEEALHAFLLVHCKLLAFYSSHGASTLRPADLLALILLVQDLHPTQDTTEEDDNDDSSPQSFPQRRPLSSQNIPVQQARSQSTSGPTRSSEETDTDSISLPEEYFTPAPSPGEQSSGSILWLDGGTPPTDIPQMAEGTLRGLMPHSPEPSSPQRIFLDANVKENYCPLVPHTMYCLPLWPGINMVLLTKSSSTALALVLYQLLDGFSLLEKKLKEGQEPGSALRSQPFVGDLRQKMDKFIKNRVGQEIQSSWLEFKTKAFSRSEAGSSWELLQACGKLKRQLCTIYRLSFLATAPSRGGPHLPQHLQDQAQKLMKERLLDWKDFLLVKSRRNVTMVSYLEDFPGLVHFIYVDRTTGQMVAPSLSNSEKMSSELGKGPLAAFVKAKVWALVRLARRYLQKGCTTLLFQEGDFRCSYFLWFENDMGYKLQMIEVPVLSEDSVPIGVLGGDYYRKLLRYYSKSRPSEPVRCYELLTLHLSVIPTDLLVQQASQLARRLGEASRVTLP", "length": 706, "header": "tr|A0A9J7JH81-1|A0A9J7JH81_CRIGR Isoform 1 of Hermansky-Pudlak syndrome 1 protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Hps1 PE=4 SV=1 CANONICAL=A0A9J7JH81-1" }, "locus": {} }, { "isoform_ac": "A0A9J7K345-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JH81/entry#A0A9J7K345-1", "sequence": { "sequence": "MKCVLVATEGAEVLFYWTDEEFEENLRLKFRQSENEEEELPALEDQLSTLLAPVIISSVTMLEKLSDTYTCFSTENGKHLYVLHLFGECLFIAINGDHSESEGDLRRKLCVLKYLFEVHFGLVTVDSQLIRKELRPPDLDQRARVWKHFQRLLGTYSHLREQEQSFAVEAVERLIHPQLCELSIETLERHVVQAVNSSPERGSEEALHAFLLVHCKLLAFYSSHGASTLRPADLLALILLVQDLHPTQDTTEEDDNDDSSPQSFPQRRPLSSQNIPVQQARSQSTSGPTRSSEETDTDSISLPEEYFTPAPSPGEQSSGSILWLDGGTPPTDIPQMAEGTLRGLMPHSPEPSSPQRIFLDANVKENYCPLVPHTMYCLPLWPGINMVLLTKSSSTALALVLYQLLDGFSLLEKKLKEGQEPGSALRSQPFVGDLRQKMDKFIKNRVGQEIQSSWLEFKTKAFSRSEAGSSWELLQACGKLKRQLCTIYRLSFLATAPSRGGPHLPQHLQDQAQKLMKERLLDWKDFLLVKSRRNVTMVSYLEDFPGLVHFIYVDRTTGQMVAPSLSNSEKMSSELGKGPLAAFVKAKVWALVRLARRYLQKGCTTLLFQEGDFRCSYFLWFENDMGYKLQMIEVPVLSEDSVPIGVLGGDYYSPGPLRGHR", "length": 661, "header": "tr|A0A9J7K345-1|A0A9J7JH81_CRIGR Computationally mapped isoform of Hermansky-Pudlak syndrome 1 protein isoform X1 OS=Cricetulus griseus OX=10029 GN=Hps1 PE=4 SV=1 CANONICAL=A0A9J7JH81-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K345", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K345" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7K345", "url": "https://www.uniprot.org/uniprotkb/A0A9J7K345" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100761713", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761713", "resource": "KEGG Pathway" } ], "orthologs": [ { "uniprot_canonical_ac": "A0A287BFN6-1", "protein_name": "HPS1 biosis of lysosomal organelles complex 3 subunit 1", "gene_name": "HPS1", "tax_id": 9823, "organism": "Sus scrofa", "sequence": { "sequence": "MKCVLVATEGAEVLFYWTDEEFKESLRLKFGQSENEGEELPALEDQLSTLLAPVIISSMTMLEKLSDTYTCFSTENGSYLYVLQQFGECLFIAINGDHTEGEGDLRQKLCVLKYLFEVHFGLVTMDSQLIRKELRPPDLEQRVRVWEHFQSLLRTYGRLREQEQSFAVEAVERLIHPQLCELCIETLERHVVQAINSSPRRAGEEALHTFLLVHSKLLAFYSSHSASSLRPADLLALILLVQDLYPSDSTAEDSDIQPRPQMARRSESIPVQQAWSTCSADPTGRSSAGTETDNFSLPEEYFTPAPSPGERSSGETWGGVTTAGEAGMAEDTLQTLVPHSPGLSSPRRIFLDASVKENYCPMVPHTMYCLPLWPGITMVLLTKSPSTPLALVLYQLLDGFSLLEKKLKEGQEAGSALRSHPLMGDLRQRMDKFVKSRGGHELQGASLGMPLGPFPAVTSHLPALRLLQACGRVKRQLCAIYRLSFLTTAPGQGGPHLPEDLQDQVQTLMQEKLADWRDFLLVKSKRNVTMILTYLEDFPGLVHFIYVDRTTGQMVAPSLSTSERTSSELGRGPLATFVKTKVWSLIRLARRYLQKGYTTLLFREGDFYCSYFLWFENEMGHKLQIIEVPVLSDDSAPVGMLGGDYYRKLLRYYSKGHPAEAVRCHELLALHLSVIPTDVLVRQAAELARRLGEASRMPLP", "length": 700 }, "evidence": [ { "id": "A0A9J7JH81", "url": "https://omabrowser.org/oma/group/A0A9J7JH81/", "database": "OMA" } ], "glygen_name": "Pig", "common_name": "Pig" }, { "uniprot_canonical_ac": "A0A8I6AEI1-1", "protein_name": "HPS1, biogenesis of lysosomal organelles complex 3 subunit 1", "gene_name": "Hps1", "tax_id": 10116, "organism": "Rattus norvegicus", "sequence": { "sequence": "MRCVLVATEGAEVLFYWTDEEFEENLRQKFRQSENEEEELPVLEDQLNTLLAPVIISYMTMLEKLSDTYTCFSTENGDHLYVLHLFGECLFIAINGDHSENEGDLRRKLCVLKYLFEVHFGLVTVDSQLIRKELRPPDLEQRAQVWKHFQRLLGTYSRLREQEQSFAVEAVERLIHAQLCELSIETLERHVVQAVNSSPERGGEEVLHAFLLVHCKLLAFYSSHVASALRPADLLALILLVQDLQPSQGTTEEEEDGNDGPQPFPHRRPMSSQNIPVQQPRSQSTSVPTRSSKETDTDSISLPEEYFTPAPSPGEQSSGSLVWLDGGTPPSDVLQMAEDTFNGLAPHSPELPRPRRIFLDANIKENYCPLVPHTMYCLPLWPGISMVLLTKSPSTPLALILYQLLDGFSLLEKKLKEGQEAGSALRSQPFVGDLRQKMDKFIKNRVGQEIQNAWLEFKSKAFSRSEPGSSWELLQICGKLKRQLCAIYRLNFLATAPSRGGPHLPQHLQSQAQKLMKERLQDWKDFLLVKSWRNVTIVSYLEDFPGLVHFIYVDRTTGQMVAPSLSPSEKMSSELGKGPLAAFVKAKVWALIRLARRYLQKGCTTLLFQEGDFRCSYFLWFENDMGYKLQMIEVPVLSDDSVPIGVLGGDYYRKLLRYYSKSRPSEPVRCYELLTLHLSVIPTDLLVQQANQLARRLGEASRVTLP", "length": 706 }, "evidence": [ { "id": "A0A9J7JH81", "url": "https://omabrowser.org/oma/group/A0A9J7JH81/", "database": "OMA" } ], "glygen_name": "Rat", "common_name": "Rat" }, { "uniprot_canonical_ac": "E1B7M9-1", "protein_name": "HPS1 biosis of lysosomal organelles complex 3 subunit 1", "gene_name": "HPS1", "tax_id": 9913, "organism": "Bos taurus", "sequence": { "sequence": "MKCVLVATESAEVLFYWTDGEFEESLRLKFGQTENEGEKPPALEDQLSTLLAPVIISSMTMLEKLSDTYTCFSTENGNYLYVLHLFGECLFIAINGDRTEGEGDLRQKLCVLKYLFEVHFGLVTVDGQLIRKELRPPDLEQRVEVWERFQSLLWTYSRLRDQEQCFAVEAVERLIHPQLCELCIEALERHVVQAINSSPGRAGEEALHAFLLVHSKLLAFYSSHNASSLRPADLLALILLVQDLYPSESTAEDSDPQPSPRRLHRSQSIPVRQAWSSCAADPTRNSAGTETDSFSPTEEYFTPAPSPGEQSSGSTIWLDGGTPPTDSPHIQMAEDTLQTLIAHSPGPSGPRRIFLDASVKDSYCPLVPHTMYCLPLWPGISMVLLTKCPSTALALALYQLLDGFSQLEKKLKEGQEAGSALRSHPIMADLRQRMDKFVKNRGGQELQKTWLEFKTKAFSKSEPGSSLELLQACRKVKRQLCAIYRFSFLTMAPGRGGPHLPQHLQDQVQTLMQEKLADWKDFLLVKSRRNVTMVSFLEDFPGLVHFIYVDRTTGQMVAPSLSSSERTSSELGRGPLATFVKTKVWSLIRLARRYLQKGYTTLLFREGDFCCSYFLWFENDMGHKLQIMEVPVLSDDSAPVGMLGGDYYRKLLRYYSKGHPAEAVRCHELLALHLSVVPTDVLVQQAGELAQRLGEASRVHLL", "length": 702 }, "evidence": [ { "id": "A0A9J7JH81", "url": "https://omabrowser.org/oma/group/A0A9J7JH81/", "database": "OMA" } ], "glygen_name": "Bovine", "common_name": "Bovine" }, { "uniprot_canonical_ac": "O08983-1", "protein_name": "BLOC-3 complex member HPS1", "gene_name": "Hps1", "tax_id": 10090, "organism": "Mus musculus", "sequence": { "sequence": "MKCVLVATEGAEVLFYWTDEEFAESLRLKLQQSEDEEEELPVLEDQLSTLLAPVIISSMTMLEKLSDTYTCFSTENDNHLYVLHLFGEYLFVAINGDHSESEGDLRRKLCVLKYLFEVHFGLVTVDGQLIRKELRPPDLEERARVWKHFQRLLGTYSYLRDREQSFAVEAVERLIHPQLCEQSIETLERHVVQAINASPERGGEEVLHAFLLVHCKLLAFYSGHGASTLRPADLLALILLVQDLQPSPGTTEEEEEEEDSDSPQRRPKSSQNIPVQQARSQSTSVPTRSSRETDTDSISLPEEYFTPAPSPGDQSSGSLVWLDGGTPPSDALQMAEDTPEGLASHSPELPSPRRIFLDANIKENYCPLVPHTMYCLPLWPGINMVLLTKSPSTPLALILYQLLDGFSLLEKKLKEGQEAGSALRSQPFVADLRQKMDKFIKNRVGQEIQNTWLEFKSKAFSRSEPGSSWELLQVCGKLKRQLCVIYRLSFLVTAPSRGGPHLPQHLQDRAQKLMKERLLDWKDFLLVKSRRNVTMVSYLEDFPGLVHFIYVDRTTGQMVAPSLSPNEKMSSELGKGPLAAFVKAKVWALVRLARRYLQKGCTTLLFQEGDFRCSYFLWFENDMGYKLQMIEVPVLSDDSVPIGVLGGDYYRKLLRYYSKSHPSEPVRCYELLTLHLSVIPTDLLVQQASQLARRLGEASRVTLP", "length": 704 }, "evidence": [ { "id": "A0A9J7JH81", "url": "https://omabrowser.org/oma/group/A0A9J7JH81/", "database": "OMA" } ], "glygen_name": "Mouse", "common_name": "Mouse" }, { "uniprot_canonical_ac": "Q92902-1", "protein_name": "BLOC-3 complex member HPS1", "gene_name": "HPS1", "tax_id": 9606, "organism": "Homo sapiens", "sequence": { "sequence": "MKCVLVATEGAEVLFYWTDQEFEESLRLKFGQSENEEEELPALEDQLSTLLAPVIISSMTMLEKLSDTYTCFSTENGNFLYVLHLFGECLFIAINGDHTESEGDLRRKLYVLKYLFEVHFGLVTVDGHLIRKELRPPDLAQRVQLWEHFQSLLWTYSRLREQEQCFAVEALERLIHPQLCELCIEALERHVIQAVNTSPERGGEEALHAFLLVHSKLLAFYSSHSASSLRPADLLALILLVQDLYPSESTAEDDIQPSPRRARSSQNIPVQQAWSPHSTGPTGGSSAETETDSFSLPEEYFTPAPSPGDQSSGSTIWLEGGTPPMDALQIAEDTLQTLVPHCPVPSGPRRIFLDANVKESYCPLVPHTMYCLPLWQGINLVLLTRSPSAPLALVLSQLMDGFSMLEKKLKEGPEPGASLRSQPLVGDLRQRMDKFVKNRGAQEIQSTWLEFKAKAFSKSEPGSSWELLQACGKLKRQLCAIYRLNFLTTAPSRGGPHLPQHLQDQVQRLMREKLTDWKDFLLVKSRRNITMVSYLEDFPGLVHFIYVDRTTGQMVAPSLNCSQKTSSELGKGPLAAFVKTKVWSLIQLARRYLQKGYTTLLFQEGDFYCSYFLWFENDMGYKLQMIEVPVLSDDSVPIGMLGGDYYRKLLRYYSKNRPTEAVRCYELLALHLSVIPTDLLVQQAGQLARRLWEASRIPLL", "length": 700 }, "evidence": [ { "id": "A0A9J7JH81", "url": "https://omabrowser.org/oma/group/A0A9J7JH81/", "database": "OMA" } ], "glygen_name": "Human", "common_name": "Human" } ], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "BLOC-3 complex", "id": "GO:0031085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0031085", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JH81", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JH81" } ], "pmid": "" } ] }, { "name": "Biological Process", "total": 2, "go_terms": [ { "name": "melanosome assembly", "id": "GO:1903232", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:1903232", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JH81", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JH81" } ], "pmid": "" }, { "name": "vesicle-mediated transport", "id": "GO:0016192", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016192", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JH81", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JH81" } ], "pmid": "" } ] }, { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "guanyl-nucleotide exchange factor activity", "id": "GO:0005085", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005085", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JH81", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JH81" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 196, "end_pos": 198, "annotation": "n_glycosylation_sequon" }, { "start_pos": 534, "end_pos": 536, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JH81", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JH81" }, { "id": "PF19036", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19036" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "FUZ/MON1/HPS1 first Longin", "eco_id": "ECO_0000259", "start_pos": 2, "end_pos": 159, "start_aa": "Lys", "end_aa": "Leu", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7JH81", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JH81" }, { "id": "PF19037", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19037" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "FUZ/MON1/HPS1 second Longin", "eco_id": "ECO_0000259", "start_pos": 205, "end_pos": 408, "start_aa": "Glu", "end_aa": "Phe", "glycosite_overlap": "" }, { "evidence": [ { "id": "A0A9J7JH81", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JH81" }, { "id": "PF19038", "database": "Pfam", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF19038" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "FUZ/MON1/HPS1 third Longin", "eco_id": "ECO_0000259", "start_pos": 546, "end_pos": 698, "start_aa": "Gly", "end_aa": "Gly", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [ { "name": "isoformset.uniprotkb", "label": "Isoforms" }, { "name": "homologset.oma", "label": "OMA Homologs" } ], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 196, "end_pos": 198 }, { "start_pos": 534, "end_pos": 536 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7JEQ1-1", "uniprot_ac": "A0A9J7JEQ1", "uniprot_id": "A0A9J7JEQ1_CRIGR", "mass": { "chemical_mass": 69396.0, "monoisotopic_mass": 69396.0 }, "refseq": { "ac": "XP_027253978", "name": "LOW QUALITY PROTEIN: uncharacterized protein KIAA2013 homolog isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253978" }, "gene_names": [ { "name": "Kiaa2013", "type": "recommended", "evidence": [ { "id": "A0A9J7JEQ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEQ1" } ] }, { "name": "Kiaa2013", "type": "synonym", "evidence": [ { "id": "XP_027253978", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253978" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: uncharacterized protein KIAA2013 homolog isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027253978", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253978" }, { "id": "A0A9J7JEQ1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEQ1/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027253978", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253978" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JEQ1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEQ1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Kiaa2013", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEQ1", "locus": {} } ], "crossref": [ { "id": "100761634", "url": "https://www.ncbi.nlm.nih.gov/gene/100761634", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR018795", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018795", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100761634", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761634", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JEQ1", "url": "https://www.orthodb.org/?gene=A0A9J7JEQ1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR31386", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31386", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR31386:SF2", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR31386:SF2", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF10222", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF10222", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027253978", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253978", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JEQ1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEQ1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JEQ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEQ1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MWLQQRLKGLPGLLSSSWARRLLCLXRLLLLLLWFASSGARRAAGGLRLPSWARSEPGAAEPSACLEAATRAWRGLRDRGEAVPLGPGVPALVANGFLALDAAYNRLWVTPGEREPAVTPDFVPFVQLRPLNVLAEAGEAVLLLREGLLRRVRCLQLGTPGSGPAAGVAGPASASGLSAGAGRDCVLLQEDFLAHRGQPHVYVQRIQINNPTERVAALQTVGPTAGPIPKAFASTLEKVGDHQFLLYSGRSTPLPSGLVHLVVVASKKLVNRLQVAPKTQLDETVLWVVHVSGPIHPQVLKSKGTKELKALQDLARKEMLELLEMPASELLQDHQRLWAQLFSPGVEMKKITDAHTPSGLTVNLTLYYMLSCSPAPLLSPSLSHREREQMEATLNYEDHCFSGHATMHAENLWPGQVSSVQQILQLADLWKLTLQKRGCKGLVKVGAPGILQGMVLSFGGLQFTENHLQFQADPEVLHNSYALHGIRYKNDHINLAVLVDAEGKPYLHVSVESRGQPVKIYACEAGCLHDPVDLTSEPGGHTFSVMVTQPITPLLYISTDLTHLQDLRHTLHLKAILAHDEHMAQQDPGLPFLFWFSVASLITLFHLFLFKLIYNEYCGPGAKPLFRSKEDPSV", "length": 634, "header": "tr|A0A9J7JEQ1-1|A0A9J7JEQ1_CRIGR Isoform 1 of LOW QUALITY PROTEIN: uncharacterized protein KIAA2013 homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=Kiaa2013 PE=4 SV=1 CANONICAL=A0A9J7JEQ1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JEQ1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEQ1/entry#A0A9J7JEQ1-1", "sequence": { "sequence": "MWLQQRLKGLPGLLSSSWARRLLCLXRLLLLLLWFASSGARRAAGGLRLPSWARSEPGAAEPSACLEAATRAWRGLRDRGEAVPLGPGVPALVANGFLALDAAYNRLWVTPGEREPAVTPDFVPFVQLRPLNVLAEAGEAVLLLREGLLRRVRCLQLGTPGSGPAAGVAGPASASGLSAGAGRDCVLLQEDFLAHRGQPHVYVQRIQINNPTERVAALQTVGPTAGPIPKAFASTLEKVGDHQFLLYSGRSTPLPSGLVHLVVVASKKLVNRLQVAPKTQLDETVLWVVHVSGPIHPQVLKSKGTKELKALQDLARKEMLELLEMPASELLQDHQRLWAQLFSPGVEMKKITDAHTPSGLTVNLTLYYMLSCSPAPLLSPSLSHREREQMEATLNYEDHCFSGHATMHAENLWPGQVSSVQQILQLADLWKLTLQKRGCKGLVKVGAPGILQGMVLSFGGLQFTENHLQFQADPEVLHNSYALHGIRYKNDHINLAVLVDAEGKPYLHVSVESRGQPVKIYACEAGCLHDPVDLTSEPGGHTFSVMVTQPITPLLYISTDLTHLQDLRHTLHLKAILAHDEHMAQQDPGLPFLFWFSVASLITLFHLFLFKLIYNEYCGPGAKPLFRSKEDPSV", "length": 634, "header": "tr|A0A9J7JEQ1-1|A0A9J7JEQ1_CRIGR Isoform 1 of LOW QUALITY PROTEIN: uncharacterized protein KIAA2013 homolog isoform X2 OS=Cricetulus griseus OX=10029 GN=Kiaa2013 PE=4 SV=1 CANONICAL=A0A9J7JEQ1-1" }, "locus": {} } ], "glycosylation": [ { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 110, "start_aa": "Thr", "end_pos": 110, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr110", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] }, { "glytoucan_ac": "", "type": "O-linked", "subtype": "", "prediction_tool_list": [ { "label": "isoglyp", "url": "https://github.com/jonmohl/ISOGlyP" } ], "site_category": "predicted", "site_category_dict": { "predicted": true }, "site_seq": "", "relation": "attached", "comment": "", "icn3d_view": {}, "start_pos": 224, "start_aa": "Thr", "end_pos": 224, "end_aa": "Thr", "residue": "Thr", "site_lbl": "Thr224", "evidence": [ { "id": "", "database": "GlyGen", "url": "https://data.glygen.org/" } ] } ], "phosphorylation": [], "glycation": [], "keywords": [ "glycoprotein", "glycoprotein_predicted" ], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JEQ1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEQ1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100761634", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100761634", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "membrane", "id": "GO:0016020", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0016020", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JEQ1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEQ1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 363, "end_pos": 365, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [ 110, 224 ], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 363, "end_pos": 365 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 2 }, { "field": "total_sites", "count": 2 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 2 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "exact_sites", "count": 2 }, { "field": "exact_o_linked_sites", "count": 2 }, { "field": "fuzzy_sites", "count": 0 } ], "sort_fields": [ "glytoucan_ac", "type", "subtype", "site_category", "site_seq", "relation", "comment", "start_pos", "start_aa", "end_pos", "end_aa", "residue", "site_lbl" ] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7JEQ9-1", "uniprot_ac": "A0A9J7JEQ9", "uniprot_id": "A0A9J7JEQ9_CRIGR", "mass": { "chemical_mass": 39107.0, "monoisotopic_mass": 39107.0 }, "refseq": { "ac": "XP_027253997", "name": "LOW QUALITY PROTEIN: F-box only protein 6 isoform X2", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253997" }, "gene_names": [ { "name": "LOC100762938", "type": "recommended", "evidence": [ { "id": "A0A9J7JEQ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEQ9" } ] }, { "name": "LOC100762938", "type": "synonym", "evidence": [ { "id": "XP_027253997", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253997" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: F-box only protein 6 isoform X2", "type": "synonym", "evidence": [ { "id": "XP_027253997", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253997" }, { "id": "A0A9J7JEQ9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEQ9/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027253997", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253997" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JEQ9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEQ9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "LOC100762938", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEQ9", "locus": {} } ], "crossref": [ { "id": "cd22168", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd22168", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100762938", "url": "https://www.ncbi.nlm.nih.gov/gene/100762938", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR001810", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001810", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR007397", "url": "https://www.ebi.ac.uk/interpro/entry/IPR007397", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR008979", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008979", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR036047", "url": "https://www.ebi.ac.uk/interpro/entry/IPR036047", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR039752", "url": "https://www.ebi.ac.uk/interpro/entry/IPR039752", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100762938", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100762938", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JEQ9", "url": "https://www.orthodb.org/?gene=A0A9J7JEQ9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12125", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12125", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR12125:SF12", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12125:SF12", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF04300", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF04300", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF12937", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF12937", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027253997", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027253997", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JEQ9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEQ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JEQ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEQ9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MVNINELPENILLELFTHVPARQLLRNCRLVCSLWRDLIDVVTLWKRKSLQEGFITKDWDQPVEDWKIFYFLRSLQRNLLRNPCAEEDMNSWQIDSNEGDEWKVESLPGEHGKNFPDSRVKKYFVTSFGMCLKSQMIDLKAEGYWEELMDTFRPEIVVKDWFAPRADCGCTYHLRVHLTSANYIVLASFDPPPVTIEQWNDATWKEVSHTFSDYPPGVRHIFFQHGGQDTQFWKGWYGPRVTNSSIIISHRPAKNPAPARPLPEDXCSNRRKTSSFGSRKPLGLFLTAICLLLCGGPLCKSKPGKSLVGSQVPSPMSTCPAASSKPINSVVILQPHSFDILL", "length": 342, "header": "tr|A0A9J7JEQ9-1|A0A9J7JEQ9_CRIGR Isoform 1 of LOW QUALITY PROTEIN: F-box only protein 6 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100762938 PE=4 SV=1 CANONICAL=A0A9J7JEQ9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JEQ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JEQ9/entry#A0A9J7JEQ9-1", "sequence": { "sequence": "MVNINELPENILLELFTHVPARQLLRNCRLVCSLWRDLIDVVTLWKRKSLQEGFITKDWDQPVEDWKIFYFLRSLQRNLLRNPCAEEDMNSWQIDSNEGDEWKVESLPGEHGKNFPDSRVKKYFVTSFGMCLKSQMIDLKAEGYWEELMDTFRPEIVVKDWFAPRADCGCTYHLRVHLTSANYIVLASFDPPPVTIEQWNDATWKEVSHTFSDYPPGVRHIFFQHGGQDTQFWKGWYGPRVTNSSIIISHRPAKNPAPARPLPEDXCSNRRKTSSFGSRKPLGLFLTAICLLLCGGPLCKSKPGKSLVGSQVPSPMSTCPAASSKPINSVVILQPHSFDILL", "length": 342, "header": "tr|A0A9J7JEQ9-1|A0A9J7JEQ9_CRIGR Isoform 1 of LOW QUALITY PROTEIN: F-box only protein 6 isoform X2 OS=Cricetulus griseus OX=10029 GN=LOC100762938 PE=4 SV=1 CANONICAL=A0A9J7JEQ9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. 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This record is derived from a genomic sequence (NW_003614037.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003504208", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003504208" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JFE8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFE8" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Capsl", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFE8", "locus": {} } ], "crossref": [ { "id": "A0A9J7JFE8", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JFE8", "database": "AlphaFoldDB", "categories": [] }, { "id": "100757989", "url": "https://www.ncbi.nlm.nih.gov/gene/100757989", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR002048", "url": "https://www.ebi.ac.uk/interpro/entry/IPR002048", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR011992", "url": "https://www.ebi.ac.uk/interpro/entry/IPR011992", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018247", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018247", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR051581", "url": "https://www.ebi.ac.uk/interpro/entry/IPR051581", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100757989", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757989", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JFE8", "url": "https://www.orthodb.org/?gene=A0A9J7JFE8", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR34524", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34524", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR34524:SF5", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR34524:SF5", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF13499", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF13499", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003504208", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003504208", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JFE8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFE8", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JFE8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFE8-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MGQRNQGQGCIFEDAMAGTARHDREMAIQSKKKLSTATDPIERLRLQCLARGSAGIKGLGRVFRIMDDNNNRTLDFKEFLKGLNDYAVVMEKEEAEELFRRFDRDGNGTIDFNEFLLTLRPPMSRARKEVIMKAFRKLDKTGDGVITIEDLREVYNAKHHPKYQNGEWTEEQVFRKFLDNFDSPYDKDGLVTPEEFMNYYAGVSASIDTDVFFIIMMTTAWKL", "length": 223, "header": "tr|A0A9J7JFE8-1|A0A9J7JFE8_CRIGR Isoform 1 of Calcyphosin-like protein OS=Cricetulus griseus OX=10029 GN=Capsl PE=4 SV=1 CANONICAL=A0A9J7JFE8-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JFE8-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFE8/entry#A0A9J7JFE8-1", "sequence": { "sequence": "MGQRNQGQGCIFEDAMAGTARHDREMAIQSKKKLSTATDPIERLRLQCLARGSAGIKGLGRVFRIMDDNNNRTLDFKEFLKGLNDYAVVMEKEEAEELFRRFDRDGNGTIDFNEFLLTLRPPMSRARKEVIMKAFRKLDKTGDGVITIEDLREVYNAKHHPKYQNGEWTEEQVFRKFLDNFDSPYDKDGLVTPEEFMNYYAGVSASIDTDVFFIIMMTTAWKL", "length": 223, "header": "tr|A0A9J7JFE8-1|A0A9J7JFE8_CRIGR Isoform 1 of Calcyphosin-like protein OS=Cricetulus griseus OX=10029 GN=Capsl PE=4 SV=1 CANONICAL=A0A9J7JFE8-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JFE8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFE8" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JFE8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFE8" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:100757989", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100757989", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": { "categories": [ { "name": "Molecular Function", "total": 1, "go_terms": [ { "name": "calcium ion binding", "id": "GO:0005509", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005509", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JFE8", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFE8" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 107, "end_pos": 109, "annotation": "n_glycosylation_sequon" }, { "start_pos": 71, "end_pos": 73, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JFE8", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFE8" }, { "id": "PS50222", "database": "PROSITE", "url": "https://prosite.expasy.org/PS50222" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "EF-hand", "eco_id": "ECO_0000259", "start_pos": 54, "end_pos": 89, "start_aa": "Ala", "end_aa": "Val", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 107, "end_pos": 109 }, { "start_pos": 71, "end_pos": 73 } ] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7JFF9-1", "uniprot_ac": "A0A9J7JFF9", "uniprot_id": "A0A9J7JFF9_CRIGR", "mass": { "chemical_mass": 160605.0, "monoisotopic_mass": 160605.0 }, "refseq": { "ac": "XP_027260548", "name": "LOW QUALITY PROTEIN: cytoplasmic FMR1-interacting protein 1", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260548" }, "gene_names": [ { "name": "Cyfip1", "type": "recommended", "evidence": [ { "id": "A0A9J7JFF9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFF9" } ] }, { "name": "Cyfip1", "type": "synonym", "evidence": [ { "id": "XP_027260548", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260548" } ] } ], "protein_names": [ { "name": "LOW QUALITY PROTEIN: cytoplasmic FMR1-interacting protein 1", "type": "synonym", "evidence": [ { "id": "XP_027260548", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260548" }, { "id": "A0A9J7JFF9", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFF9/entry#names_and_taxonomy" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 2 indels ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027260548", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260548" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JFF9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFF9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cyfip1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFF9", "locus": {} } ], "crossref": [ { "id": "100759530", "url": "https://www.ncbi.nlm.nih.gov/gene/100759530", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR008081", "url": "https://www.ebi.ac.uk/interpro/entry/IPR008081", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009828", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009828", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100759530", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100759530", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JFF9", "url": "https://www.orthodb.org/?gene=A0A9J7JFF9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR12195", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR12195", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF05994", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF05994", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "PF07159", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF07159", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027260548", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260548", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JFF9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFF9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JFF9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFF9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MAAQVTLEDALSNVDLLEELPLPDQQPCIEPPPSSLLYQPNFNTNFEDRNAFVTGIARYIEQATVHSSMNEMLEEGQEYAVMLYTWRSCSRAIPQVKCNEQPNRVEIYEKTVEVLEPEVTKLMNFMYFQRNAIERFCGEVRRLCHAERRKDFVSEAYLITLGKFINMFAVLDELKNMKCSVKNDHSAYKRAAQFLRKMADPQSIQESQNLSMFLANHNKITQSLQQQLEVISGYEELLADIVNLCVDYYENRMYLTPSEKHMLLKVMGFGLYLMDGSVSNIYKLDAKKRINLSKIDKYFKQLQVVPLFGDMQIELARYIKTSAHYEENKSRWTCTSSSSSPQYNICEQMIQIREDHMRFISELARYSNSEVVTGSGRQEAQKTDAEYRKLFDLALQGLQLLSQWSAHVMEVYSWKLVHPTDKYSNKDCPDNAEEYERATRYNYTTEEKFALVEVIAMIKGLQVLMGRMESVFNHAIRHTVYAALQDFSQVTLREPLRQAIKKKKNVIQSVLQAIRKTVCDWETGHEPFNDPALRGEKDPKSGFDIKVPRRAVGPSSTQLFLVRTMAESLSSAELLRQLKSLGMERLLHVVNAFLRQSYTYPPLLTFGGKTSFVFLVDAYGTEVSCSSTHSSSQEAASALWIPRPSGQPVYGQLIAGMGLRQGVVEQFFFYXIFPFDVTNVPFIFFSLQISPWIIQLYMVRTMLESLIADKSGSKKTLRSSLEGPTILDIEKFHRESFFYTHLINFSETLQQCCDLSQLWFREFFLELTMGRRIQFPIEMSMPWILTDHILETKEASMMEYVLYSLDLYNDSAHYALTRFNKQFLYDEIEAEVNLCFDQFVYKLADQIFAYYKVMAGSLLLDKRLRSECKNQGATIHLPPSNRYETLLKQRHVQLLGRSIDLNRLITQRVSAAMYKSLELAIGRFESEDLTSVVELDGLLEINRMTHKLMSKYLTLDSFDAMFREANHNVSAPYGRITLHVFWELNYDFLPNYCYNGSTNRFVRTVLPFSQEFQRDKQPNAQPQYLHGSKALNLAYSSIYGSYRNFVGPPHFQVICRLLGYQGIAVVMEELLKVVKSLLQGTILQYVKTLMEVMPKICRLPRHEYGSPGILEFFHHQLKDIVEYAELKTVCFQNLREVGNAVLFCLLIEQSLSLEEVCDLLHAAPFQNILPRVHVKEGERVDAKMKRLESKYAPLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVILTRIRTFLDDPIWRGPLPSNGVMHVDECVEFHRLWSAMQFVYCIPVGTHEFTVEQCFGDGLHWAGCMIIVLLGQQRRFAVLDFCYHLLKVQKHDGKDEIIKNVPLKKMVERIRKFQILNDEIITILDKYLKSGDGESTPVEHVRCFQPPIHQSLASS", 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Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JFF9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFF9" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. 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This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027257498", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257498" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JFG5", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFG5" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Iqgap2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFG5", "locus": {} } ], "crossref": [ { "id": "cd05131", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd05131", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd21275", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd21275", "database": "CDD", 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Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 2% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_003614539.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 27, 2016 this sequence version replaced XP_003508461.2. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_003508461", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003508461" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JFJ9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFJ9" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ccdc7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFJ9", "locus": {} } ], "crossref": [ { "id": "A0A9J7JFJ9", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JFJ9", "database": "AlphaFoldDB", "categories": [] }, { "id": "100764183", "url": "https://www.ncbi.nlm.nih.gov/gene/100764183", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR029272", "url": "https://www.ebi.ac.uk/interpro/entry/IPR029272", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100764183", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100764183", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JFJ9", "url": "https://www.orthodb.org/?gene=A0A9J7JFJ9", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR22035", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22035", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR22035:SF4", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22035:SF4", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF15368", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF15368", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_003508461", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_003508461", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JFJ9", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFJ9", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JFJ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFJ9-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MKRAKQLPSVSKKLANVPELPYKKGLLNSPPKSKEKHNAKAQHDKIEPMVLRSPPTGESIVRYALPIPSSKTKDLITEDEVVKRIAKHLKMVVAALENTYGTVNEDGERTGLKRKEESSTLSVGDDMNSFLLCCSQFASQLEEAVKEERNILESLFMWFQQQVNQMEEISRDQSNFEEDLPSDDKTVDLNISQIANLVHKFEELKNRLKEQRGSLGTKHMDKDIVSETMKSFEAIEKQIEEFIKSHPEFESQFVSEVESGTPYSLTDRMSIMIKIFENQTTMLERALNDQSIIETKYKQMETDFQVLLLEKTLLESEIQKMKVPEKAKPTGKDERTKKPPRPERKKESER", "length": 350, "header": "tr|A0A9J7JFJ9-1|A0A9J7JFJ9_CRIGR Isoform 1 of Coiled-coil domain-containing protein 7 OS=Cricetulus griseus OX=10029 GN=Ccdc7 PE=4 SV=1 CANONICAL=A0A9J7JFJ9-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JFJ9-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFJ9/entry#A0A9J7JFJ9-1", "sequence": { "sequence": "MKRAKQLPSVSKKLANVPELPYKKGLLNSPPKSKEKHNAKAQHDKIEPMVLRSPPTGESIVRYALPIPSSKTKDLITEDEVVKRIAKHLKMVVAALENTYGTVNEDGERTGLKRKEESSTLSVGDDMNSFLLCCSQFASQLEEAVKEERNILESLFMWFQQQVNQMEEISRDQSNFEEDLPSDDKTVDLNISQIANLVHKFEELKNRLKEQRGSLGTKHMDKDIVSETMKSFEAIEKQIEEFIKSHPEFESQFVSEVESGTPYSLTDRMSIMIKIFENQTTMLERALNDQSIIETKYKQMETDFQVLLLEKTLLESEIQKMKVPEKAKPTGKDERTKKPPRPERKKESER", "length": 350, "header": "tr|A0A9J7JFJ9-1|A0A9J7JFJ9_CRIGR Isoform 1 of Coiled-coil domain-containing protein 7 OS=Cricetulus griseus OX=10029 GN=Ccdc7 PE=4 SV=1 CANONICAL=A0A9J7JFJ9-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"UniProtKB", "id": "A0A9J7JFN1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFN1" } ], "pmid": "" } ] }, { "name": "Cellular Component", "total": 1, "go_terms": [ { "name": "plasma membrane", "id": "GO:0005886", "url": "https://www.ebi.ac.uk/QuickGO/term/GO:0005886", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JFN1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFN1" } ], "pmid": "" } ] } ] }, "pro_annotation": [], "site_annotation": [ { "start_pos": 216, "end_pos": 218, "annotation": "n_glycosylation_sequon" }, { "start_pos": 56, "end_pos": 58, "annotation": "n_glycosylation_sequon" }, { "start_pos": 93, "end_pos": 95, "annotation": "n_glycosylation_sequon" } ], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JFN1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFN1" }, { 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Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 3% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048596.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027260837", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027260837" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JFN7", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFN7" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Ovch2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFN7", "locus": {} } ], "crossref": [ { "id": "A0A9J7JFN7", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JFN7", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00041", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00041", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "cd00190", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00190", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100766258", "url": "https://www.ncbi.nlm.nih.gov/gene/100766258", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000859", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000859", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001254", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001254", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR001314", "url": "https://www.ebi.ac.uk/interpro/entry/IPR001314", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR009003", "url": "https://www.ebi.ac.uk/interpro/entry/IPR009003", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR018114", "url": "https://www.ebi.ac.uk/interpro/entry/IPR018114", "database": "InterPro", 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MODEL REFSEQ: This record is predicted by automated computational analysis. 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Also see: Documentation of NCBI's Annotation Process COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027258071", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027258071" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JFV2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFV2" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Cdcp2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFV2", "locus": {} } ], "crossref": [ { "id": "A0A9J7JFV2", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JFV2", "database": "AlphaFoldDB", "categories": [] }, { "id": "cd00041", "url": "https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00041", "database": "CDD", "categories": [ "Protein Classification" ] }, { "id": "100770767", "url": "https://www.ncbi.nlm.nih.gov/gene/100770767", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "IPR000859", "url": "https://www.ebi.ac.uk/interpro/entry/IPR000859", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "IPR035914", "url": "https://www.ebi.ac.uk/interpro/entry/IPR035914", "database": "InterPro", "categories": [ "Protein Classification" ] }, { "id": "cge:100770767", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:100770767", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JFV2", "url": "https://www.orthodb.org/?gene=A0A9J7JFV2", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "PTHR24251", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24251", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PTHR24251:SF47", "url": "http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24251:SF47", "database": "PANTHER", "categories": [ "Protein Classification" ] }, { "id": "PF00431", "url": "https://www.ebi.ac.uk/interpro/entry/pfam/PF00431", "database": "Pfam", "categories": [ "Protein Classification", "Other" ] }, { "id": "XP_027258071", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027258071", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JFV2", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFV2", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JFV2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFV2-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MLAELGAYVLLAMVLLGSGPGIQAMEGIKCGGVLSAPAGNFSSPNFPSLYPYNTECSWLIVVAEGSSVLLTFHAFDLEYHDTCGFDFLEIYNGASGDKGNLLGRFCGQVPPPPFTSSWHVMSVIFHSDKHVASRGFSAGYQKDVCGGVLTGLSGVLSSPEYPNNYPNNVECHWLIRASGPAAVKLVFVDFQVEGSSGCMYDYVAVLGAPGPAHGHQYCGRTRPPTLVSLGHELQVIFKSDFNIGGRGFKAHYFSGECQEVFTAVRGNFSSPQYPGSYPNNIRCHWTIRLPPGYRVKVFILDMGLEEPNSLTRTCDFDHLAAFDGASEEAQLLGKWCGRHLPPPVTSRHNQLLLLLHTDRSTSGRGFSVAYIGVVPMNVSCSRTDFQILISAQALAPLERTKVYLGSRSCVAQEVGGNFRIQARFDTCGTESQRRNNTSMIVSVLYIDFSDAGHEDIHEYEVRCEPRRKEASVHLLSGSHWLGPYAATAEHLQEAPSRDEAEVLEGPGTVVAQDTSDIVFLGLCILAGVLMIIAIVVLMLL", "length": 540, "header": "tr|A0A9J7JFV2-1|A0A9J7JFV2_CRIGR Isoform 1 of CUB domain-containing protein 2 OS=Cricetulus griseus OX=10029 GN=Cdcp2 PE=4 SV=1 CANONICAL=A0A9J7JFV2-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JFV2-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFV2/entry#A0A9J7JFV2-1", "sequence": { "sequence": "MLAELGAYVLLAMVLLGSGPGIQAMEGIKCGGVLSAPAGNFSSPNFPSLYPYNTECSWLIVVAEGSSVLLTFHAFDLEYHDTCGFDFLEIYNGASGDKGNLLGRFCGQVPPPPFTSSWHVMSVIFHSDKHVASRGFSAGYQKDVCGGVLTGLSGVLSSPEYPNNYPNNVECHWLIRASGPAAVKLVFVDFQVEGSSGCMYDYVAVLGAPGPAHGHQYCGRTRPPTLVSLGHELQVIFKSDFNIGGRGFKAHYFSGECQEVFTAVRGNFSSPQYPGSYPNNIRCHWTIRLPPGYRVKVFILDMGLEEPNSLTRTCDFDHLAAFDGASEEAQLLGKWCGRHLPPPVTSRHNQLLLLLHTDRSTSGRGFSVAYIGVVPMNVSCSRTDFQILISAQALAPLERTKVYLGSRSCVAQEVGGNFRIQARFDTCGTESQRRNNTSMIVSVLYIDFSDAGHEDIHEYEVRCEPRRKEASVHLLSGSHWLGPYAATAEHLQEAPSRDEAEVLEGPGTVVAQDTSDIVFLGLCILAGVLMIIAIVVLMLL", "length": 540, "header": "tr|A0A9J7JFV2-1|A0A9J7JFV2_CRIGR Isoform 1 of CUB domain-containing protein 2 OS=Cricetulus griseus OX=10029 GN=Cdcp2 PE=4 SV=1 CANONICAL=A0A9J7JFV2-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. 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"reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [ { "evidence": [ { "id": "A0A9J7JFV2", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFV2" }, { "id": "PS01180", "database": "PROSITE", "url": "https://prosite.expasy.org/PS01180" } ], "ann_type": "Domain_Extent_Annotation", "uniprotkb_annotation": "CUB", "eco_id": "ECO_0000259", "start_pos": 30, "end_pos": 143, "start_aa": "Cys", "end_aa": "Asp", "glycosite_overlap": "" } ], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [ { "start_pos": 267, "end_pos": 269 }, { "start_pos": 377, "end_pos": 379 }, { "start_pos": 40, "end_pos": 42 }, { "start_pos": 435, "end_pos": 437 }, { "start_pos": 436, "end_pos": 438 } ] }, 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"publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] }, { "uniprot_canonical_ac": "A0A9J7JFW1-1", "uniprot_ac": "A0A9J7JFW1", "uniprot_id": "A0A9J7JFW1_CRIGR", "mass": { "chemical_mass": 17352.0, "monoisotopic_mass": 17352.0 }, "refseq": { "ac": "XP_027257691", "name": "small integral membrane protein 28", "summary": "", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257691" }, "gene_names": [ { "name": "Smim28", "type": "recommended", "evidence": [ { "id": "A0A9J7JFW1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFW1" } ] }, { "name": "Smim28", "type": "synonym", "evidence": [ { "id": "XP_027257691", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257691" } ] } ], "protein_names": [ { "name": "Small integral membrane protein 28", "type": "synonym", "evidence": [ { "id": "A0A9J7JFW1", "database": "UniProtKB", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFW1/entry#names_and_taxonomy" } ] }, { "name": "small integral membrane protein 28", "type": "synonym", "evidence": [ { "id": "XP_027257691", "database": "RefSeq", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257691" } ] } ], "function": [ { "annotation": "##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Cricetulus griseus Annotation Release 104 Annotation Version :: 104 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 8% of CDS bases ##RefSeq-Attributes-END## MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048595.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jul 10, 2020 this sequence version replaced XP_027257691.1. COMPLETENESS: full length.", "evidence": [ { "database": "RefSeq", "id": "XP_027257691", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257691" } ] } ], "disease": [], "snv": [], "mutagenesis": [], "expression_tissue": [], "expression_disease": [], "species": [ { "name": "Cricetulus griseus", "taxid": 10029, "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JFW1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFW1" } ], "common_name": "Chinese hamster", "glygen_name": "Hamster", "reference_species": "Cricetulus griseus [10029]" } ], "gene": [ { "name": "Smim28", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFW1", "locus": {} } ], "crossref": [ { "id": "A0A9J7JFW1", "url": "https://alphafold.ebi.ac.uk/entry/A0A9J7JFW1", "database": "AlphaFoldDB", "categories": [] }, { "id": "113834230", "url": "https://www.ncbi.nlm.nih.gov/gene/113834230", "database": "GeneID", "categories": [ "Genome Annotation" ] }, { "id": "cge:113834230", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113834230", "database": "KEGG Pathway", "categories": [ "Enzyme and Pathway" ] }, { "id": "A0A9J7JFW1", "url": "https://www.orthodb.org/?gene=A0A9J7JFW1", "database": "OrthoDB", "categories": [ "Protein Classification" ] }, { "id": "XP_027257691", "url": "https://www.ncbi.nlm.nih.gov/protein/XP_027257691", "database": "RefSeq", "categories": [ "Protein" ] }, { "id": "A0A9J7JFW1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFW1", "database": "UniProtKB", "categories": [ "Protein" ] }, { "id": "A0A9J7JFW1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFW1-1", "database": "UniProtKB", "categories": [ "Protein" ] } ], "sequence": { "sequence": "MRGLLGSSWRKFGHAGRGTYEWLTSEPSLTLLEPQLQGTQQMSSTQADVKPFLCILLPATIMLFLAFLLLFLYQRCQAPQAQGQVFSIDLPEPPSIEVTDFLPSRPWGSEQTVPYSPLPVFGTLHLTCLPPSYEEAMGNLPGKEVLGMVPQNGEESL", "length": 157, "header": "tr|A0A9J7JFW1-1|A0A9J7JFW1_CRIGR Isoform 1 of Small integral membrane protein 28 OS=Cricetulus griseus OX=10029 GN=Smim28 PE=4 SV=1 CANONICAL=A0A9J7JFW1-1" }, "isoforms": [ { "isoform_ac": "A0A9J7JFW1-1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFW1/entry#A0A9J7JFW1-1", "sequence": { "sequence": "MRGLLGSSWRKFGHAGRGTYEWLTSEPSLTLLEPQLQGTQQMSSTQADVKPFLCILLPATIMLFLAFLLLFLYQRCQAPQAQGQVFSIDLPEPPSIEVTDFLPSRPWGSEQTVPYSPLPVFGTLHLTCLPPSYEEAMGNLPGKEVLGMVPQNGEESL", "length": 157, "header": "tr|A0A9J7JFW1-1|A0A9J7JFW1_CRIGR Isoform 1 of Small integral membrane protein 28 OS=Cricetulus griseus OX=10029 GN=Smim28 PE=4 SV=1 CANONICAL=A0A9J7JFW1-1" }, "locus": {} } ], "glycosylation": [], "phosphorylation": [], "glycation": [], "keywords": [], "publication": [ { "title": "A reference genome of the Chinese hamster based on a hybrid assembly strategy.", "journal": "Biotechnol. Bioeng.", "date": "2018", "authors": "Rupp Oliver, MacDonald Madolyn L, Li Shangzhong, Dhiman Heena, Polson Shawn, Griep Sven, Heffner Kelley, Hernandez Inmaculada, Brinkrolf Karina, Jadhav Vaibhav, Samoudi Mojtaba, Hao Haiping, Kingham Brewster, Goesmann Alexander, Betenbaugh Michael J, Lewis Nathan E, Borth Nicole, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JFW1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFW1" } ], "reference": [ { "type": "PubMed", "id": "29704459", "url": "https://glygen.org/publication/PubMed/29704459" } ] }, { "title": "Chromosome-scale scaffolds for the Chinese hamster reference genome assembly to facilitate the study of the CHO epigenome.", "journal": "Biotechnol. Bioeng.", "date": "2020", "authors": "Hilliard William, MacDonald Madolyn L, Lee Kelvin H", "evidence": [ { "database": "UniProtKB", "id": "A0A9J7JFW1", "url": "https://www.uniprot.org/uniprotkb/A0A9J7JFW1" } ], "reference": [ { "type": "PubMed", "id": "32410221", "url": "https://glygen.org/publication/PubMed/32410221" } ] } ], "pathway": [ { "id": "cge:113834230", "name": "", "url": "https://www.genome.jp/dbget-bin/www_bget?cge:113834230", "resource": "KEGG Pathway" } ], "orthologs": [], "go_annotation": {}, "pro_annotation": [], "site_annotation": [], "ptm_annotation": [], "interactions": [], "reactions": [], "reaction_participants": [], "reaction_enzymes": [], "biomarkers": [], "structures": [], "lectin_list": [], "domain_list": [], "binding_sites": [], "synthesized_glycans": [], "enzyme_annotation": [], "cluster_types": [], "sequence_features": { "n_linked_sites": [], "o_linked_sites": [], "snv_sites": [], "glycation_sites": [], "phosphorylation_sites": [], "sequon_annotation_sites": [] }, "class_list": [], "section_stats": [ { "table_id": "glycosylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_reported_with_glycan", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_predicted", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "glycosylation_automatic_literature_mining", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 }, { "field": "n_linked_sites", "count": 0 }, { "field": "o_linked_sites", "count": 0 }, { "field": "n_linked_glycan_sites", "count": 0 }, { "field": "o_linked_glycan_sites", "count": 0 }, { "field": "n_linked_glycans", "count": 0 }, { "field": "o_linked_glycans", "count": 0 }, { "field": "total", "count": 0 } ], "sort_fields": [] }, { "table_id": "phosphorylation", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "snv_non_disease", "table_stats": [ { "field": "total", "count": 0 }, { "field": "total_sites", "count": 0 } ], "sort_fields": [] }, { "table_id": "publication", "table_stats": [ { "field": "total", "count": 2 } ], "sort_fields": [ "title", "journal", "date", "authors" ] } ] } ]